1 | // |
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2 | // ******************************************************************** |
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3 | // * License and Disclaimer * |
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4 | // * * |
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5 | // * The Geant4 software is copyright of the Copyright Holders of * |
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6 | // * the Geant4 Collaboration. It is provided under the terms and * |
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7 | // * conditions of the Geant4 Software License, included in the file * |
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8 | // * LICENSE and available at http://cern.ch/geant4/license . These * |
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9 | // * include a list of copyright holders. * |
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10 | // * * |
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11 | // * Neither the authors of this software system, nor their employing * |
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12 | // * institutes,nor the agencies providing financial support for this * |
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13 | // * work make any representation or warranty, express or implied, * |
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14 | // * regarding this software system or assume any liability for its * |
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15 | // * use. Please see the license in the file LICENSE and URL above * |
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16 | // * for the full disclaimer and the limitation of liability. * |
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17 | // * * |
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18 | // * This code implementation is the result of the scientific and * |
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19 | // * technical work of the GEANT4 collaboration. * |
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20 | // * By using, copying, modifying or distributing the software (or * |
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21 | // * any work based on the software) you agree to acknowledge its * |
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22 | // * use in resulting scientific publications, and indicate your * |
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23 | // * acceptance of all terms of the Geant4 Software license. * |
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24 | // ******************************************************************** |
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25 | // |
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26 | // $Id: HadrontherapyAnalisysManager.cc; |
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27 | // See more at: http://g4advancedexamples.lngs.infn.it/Examples/hadrontherapy |
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28 | |
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29 | #include "HadrontherapyAnalysisManager.hh" |
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30 | #include "HadrontherapyMatrix.hh" |
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31 | #include "HadrontherapyAnalysisFileMessenger.hh" |
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32 | #include <time.h> |
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33 | |
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34 | HadrontherapyAnalysisManager* HadrontherapyAnalysisManager::instance = 0; |
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35 | |
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36 | HadrontherapyAnalysisManager::HadrontherapyAnalysisManager(): |
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37 | #ifdef G4ANALYSIS_USE_ROOT |
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38 | analysisFileName("DoseDistribution.root"),theTFile(0), histo1(0), histo2(0), histo3(0), |
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39 | histo4(0), histo5(0), histo6(0), histo7(0), histo8(0), histo9(0), histo10(0), histo11(0), histo12(0), histo13(0), histo14(0), histo15(0), histo16(0), |
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40 | kinFragNtuple(0), |
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41 | kineticEnergyPrimaryNtuple(0), |
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42 | doseFragNtuple(0), |
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43 | fluenceFragNtuple(0), |
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44 | letFragNtuple(0), |
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45 | theROOTNtuple(0), |
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46 | theROOTIonTuple(0), |
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47 | fragmentNtuple(0), |
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48 | metaData(0), |
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49 | eventCounter(0) |
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50 | { |
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51 | fMess = new HadrontherapyAnalysisFileMessenger(this); |
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52 | } |
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53 | #endif |
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54 | ///////////////////////////////////////////////////////////////////////////// |
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55 | |
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56 | HadrontherapyAnalysisManager::~HadrontherapyAnalysisManager() |
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57 | { |
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58 | delete(fMess); |
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59 | #ifdef G4ANALYSIS_USE_ROOT |
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60 | Clear(); |
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61 | #endif |
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62 | } |
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63 | |
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64 | HadrontherapyAnalysisManager* HadrontherapyAnalysisManager::GetInstance() |
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65 | { |
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66 | if (instance == 0) instance = new HadrontherapyAnalysisManager; |
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67 | return instance; |
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68 | } |
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69 | #ifdef G4ANALYSIS_USE_ROOT |
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70 | void HadrontherapyAnalysisManager::Clear() |
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71 | { |
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72 | // XXX delete ALL variables!! |
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73 | // but this seems to be automatically done by |
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74 | // theTFile->Close() command! |
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75 | // so we get a *double free or corruption* |
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76 | |
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77 | delete metaData; |
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78 | metaData = 0; |
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79 | |
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80 | delete fragmentNtuple; |
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81 | fragmentNtuple = 0; |
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82 | |
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83 | delete theROOTIonTuple; |
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84 | theROOTIonTuple = 0; |
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85 | |
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86 | delete theROOTNtuple; |
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87 | theROOTNtuple = 0; |
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88 | |
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89 | delete histo16; |
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90 | histo16 = 0; |
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91 | |
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92 | delete histo15; |
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93 | histo15 = 0; |
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94 | |
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95 | delete histo14; |
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96 | histo14 = 0; |
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97 | |
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98 | delete histo13; |
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99 | histo13 = 0; |
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100 | |
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101 | delete histo12; |
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102 | histo12 = 0; |
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103 | |
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104 | delete histo11; |
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105 | histo11 = 0; |
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106 | |
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107 | delete histo10; |
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108 | histo10 = 0; |
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109 | |
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110 | delete histo9; |
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111 | histo9 = 0; |
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112 | |
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113 | delete histo8; |
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114 | histo8 = 0; |
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115 | |
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116 | delete histo7; |
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117 | histo7 = 0; |
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118 | |
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119 | delete histo6; |
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120 | histo6 = 0; |
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121 | |
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122 | delete histo5; |
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123 | histo5 = 0; |
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124 | |
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125 | delete histo4; |
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126 | histo4 = 0; |
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127 | |
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128 | delete histo3; |
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129 | histo3 = 0; |
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130 | |
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131 | delete histo2; |
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132 | histo2 = 0; |
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133 | |
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134 | delete histo1; |
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135 | histo1 = 0; |
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136 | } |
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137 | ///////////////////////////////////////////////////////////////////////////// |
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138 | |
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139 | void HadrontherapyAnalysisManager::SetAnalysisFileName(G4String aFileName) |
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140 | { |
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141 | this->analysisFileName = aFileName; |
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142 | } |
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143 | |
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144 | ///////////////////////////////////////////////////////////////////////////// |
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145 | void HadrontherapyAnalysisManager::book() |
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146 | { |
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147 | delete theTFile; // this is similar to theTFile->Close() => delete all associated variables created via new, moreover it delete itself. |
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148 | |
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149 | theTFile = new TFile(analysisFileName, "RECREATE"); |
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150 | |
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151 | // Create the histograms with the energy deposit along the X axis |
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152 | histo1 = createHistogram1D("braggPeak","slice, energy", 400, 0., 80); //<different waterthicknesses are accoutned for in ROOT-analysis stage |
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153 | histo2 = createHistogram1D("h20","Secondary protons - slice, energy", 400, 0., 400.); |
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154 | histo3 = createHistogram1D("h30","Secondary neutrons - slice, energy", 400, 0., 400.); |
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155 | histo4 = createHistogram1D("h40","Secondary alpha - slice, energy", 400, 0., 400.); |
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156 | histo5 = createHistogram1D("h50","Secondary gamma - slice, energy", 400, 0., 400.); |
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157 | histo6 = createHistogram1D("h60","Secondary electron - slice, energy", 400, 0., 400.); |
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158 | histo7 = createHistogram1D("h70","Secondary triton - slice, energy", 400, 0., 400.); |
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159 | histo8 = createHistogram1D("h80","Secondary deuteron - slice, energy", 400, 0., 400.); |
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160 | histo9 = createHistogram1D("h90","Secondary pion - slice, energy", 400, 0., 400.); |
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161 | histo10 = createHistogram1D("h100","Energy distribution of secondary electrons", 70, 0., 70.); |
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162 | histo11 = createHistogram1D("h110","Energy distribution of secondary photons", 70, 0., 70.); |
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163 | histo12 = createHistogram1D("h120","Energy distribution of secondary deuterons", 70, 0., 70.); |
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164 | histo13 = createHistogram1D("h130","Energy distribution of secondary tritons", 70, 0., 70.); |
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165 | histo14 = createHistogram1D("h140","Energy distribution of secondary alpha particles", 70, 0., 70.); |
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166 | histo15 = createHistogram1D("heliumEnergyAfterPhantom","Energy distribution of secondary helium fragments after the phantom", |
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167 | 70, 0., 500.); |
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168 | histo16 = createHistogram1D("hydrogenEnergyAfterPhantom","Energy distribution of secondary helium fragments after the phantom", |
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169 | 70, 0., 500.); |
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170 | |
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171 | kinFragNtuple = new TNtuple("kinFragNtuple", |
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172 | "Kinetic energy by voxel & fragment", |
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173 | "i:j:k:A:Z:kineticEnergy"); |
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174 | kineticEnergyPrimaryNtuple= new TNtuple("kineticEnergyPrimaryNtuple", |
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175 | "Kinetic energy by voxel of primary", |
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176 | "i:j:k:kineticEnergy"); |
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177 | doseFragNtuple = new TNtuple("doseFragNtuple", |
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178 | "Energy deposit by voxel & fragment", |
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179 | "i:j:k:A:Z:energy"); |
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180 | |
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181 | fluenceFragNtuple = new TNtuple("fluenceFragNtuple", |
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182 | "Fluence by voxel & fragment", |
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183 | "i:j:k:A:Z:fluence"); |
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184 | |
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185 | letFragNtuple = new TNtuple("letFragNtuple", |
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186 | "Let by voxel & fragment", |
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187 | "i:j:k:A:Z:letT:letD"); |
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188 | |
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189 | theROOTNtuple = new TNtuple("theROOTNtuple", |
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190 | "Energy deposit by slice", |
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191 | "i:j:k:energy"); |
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192 | |
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193 | theROOTIonTuple = new TNtuple("theROOTIonTuple", |
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194 | "Generic ion information", |
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195 | "a:z:occupancy:energy"); |
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196 | |
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197 | fragmentNtuple = new TNtuple("fragmentNtuple", |
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198 | "Fragments", |
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199 | "A:Z:energy:posX:posY:posZ"); |
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200 | |
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201 | metaData = new TNtuple("metaData", |
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202 | "Metadata", |
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203 | "events:detectorDistance:waterThickness:beamEnergy:energyError:phantomCenterDistance"); |
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204 | } |
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205 | |
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206 | ///////////////////////////////////////////////////////////////////////////// |
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207 | void HadrontherapyAnalysisManager::FillEnergyDeposit(G4int i, |
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208 | G4int j, |
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209 | G4int k, |
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210 | G4double energy) |
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211 | { |
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212 | if (theROOTNtuple) { |
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213 | theROOTNtuple->Fill(i, j, k, energy); |
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214 | } |
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215 | } |
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216 | |
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217 | ///////////////////////////////////////////////////////////////////////////// |
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218 | void HadrontherapyAnalysisManager::BraggPeak(G4int slice, G4double energy) |
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219 | { |
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220 | histo1->SetBinContent(slice, energy); //This uses setbincontent instead of fill to get labels correct |
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221 | } |
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222 | |
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223 | ///////////////////////////////////////////////////////////////////////////// |
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224 | void HadrontherapyAnalysisManager::SecondaryProtonEnergyDeposit(G4int slice, G4double energy) |
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225 | { |
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226 | histo2->Fill(slice, energy); |
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227 | } |
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228 | |
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229 | ///////////////////////////////////////////////////////////////////////////// |
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230 | void HadrontherapyAnalysisManager::SecondaryNeutronEnergyDeposit(G4int slice, G4double energy) |
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231 | { |
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232 | histo3->Fill(slice, energy); |
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233 | } |
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234 | |
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235 | ///////////////////////////////////////////////////////////////////////////// |
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236 | void HadrontherapyAnalysisManager::SecondaryAlphaEnergyDeposit(G4int slice, G4double energy) |
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237 | { |
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238 | histo4->Fill(slice, energy); |
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239 | } |
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240 | |
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241 | ///////////////////////////////////////////////////////////////////////////// |
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242 | void HadrontherapyAnalysisManager::SecondaryGammaEnergyDeposit(G4int slice, G4double energy) |
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243 | { |
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244 | histo5->Fill(slice, energy); |
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245 | } |
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246 | |
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247 | ///////////////////////////////////////////////////////////////////////////// |
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248 | void HadrontherapyAnalysisManager::SecondaryElectronEnergyDeposit(G4int slice, G4double energy) |
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249 | { |
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250 | histo6->Fill(slice, energy); |
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251 | } |
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252 | |
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253 | ///////////////////////////////////////////////////////////////////////////// |
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254 | void HadrontherapyAnalysisManager::SecondaryTritonEnergyDeposit(G4int slice, G4double energy) |
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255 | { |
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256 | histo7->Fill(slice, energy); |
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257 | } |
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258 | |
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259 | ///////////////////////////////////////////////////////////////////////////// |
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260 | void HadrontherapyAnalysisManager::SecondaryDeuteronEnergyDeposit(G4int slice, G4double energy) |
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261 | { |
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262 | histo8->Fill(slice, energy); |
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263 | } |
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264 | |
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265 | ///////////////////////////////////////////////////////////////////////////// |
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266 | void HadrontherapyAnalysisManager::SecondaryPionEnergyDeposit(G4int slice, G4double energy) |
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267 | { |
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268 | histo9->Fill(slice, energy); |
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269 | } |
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270 | |
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271 | ///////////////////////////////////////////////////////////////////////////// |
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272 | void HadrontherapyAnalysisManager::electronEnergyDistribution(G4double energy) |
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273 | { |
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274 | histo10->Fill(energy); |
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275 | } |
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276 | |
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277 | ///////////////////////////////////////////////////////////////////////////// |
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278 | void HadrontherapyAnalysisManager::gammaEnergyDistribution(G4double energy) |
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279 | { |
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280 | histo11->Fill(energy); |
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281 | } |
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282 | |
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283 | ///////////////////////////////////////////////////////////////////////////// |
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284 | void HadrontherapyAnalysisManager::deuteronEnergyDistribution(G4double energy) |
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285 | { |
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286 | histo12->Fill(energy); |
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287 | } |
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288 | |
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289 | ///////////////////////////////////////////////////////////////////////////// |
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290 | void HadrontherapyAnalysisManager::tritonEnergyDistribution(G4double energy) |
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291 | { |
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292 | histo13->Fill(energy); |
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293 | } |
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294 | |
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295 | ///////////////////////////////////////////////////////////////////////////// |
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296 | void HadrontherapyAnalysisManager::alphaEnergyDistribution(G4double energy) |
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297 | { |
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298 | histo14->Fill(energy); |
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299 | } |
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300 | ///////////////////////////////////////////////////////////////////////////// |
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301 | void HadrontherapyAnalysisManager::heliumEnergy(G4double secondaryParticleKineticEnergy) |
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302 | { |
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303 | histo15->Fill(secondaryParticleKineticEnergy); |
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304 | } |
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305 | |
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306 | ///////////////////////////////////////////////////////////////////////////// |
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307 | void HadrontherapyAnalysisManager::hydrogenEnergy(G4double secondaryParticleKineticEnergy) |
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308 | { |
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309 | histo16->Fill(secondaryParticleKineticEnergy); |
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310 | } |
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311 | |
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312 | ///////////////////////////////////////////////////////////////////////////// |
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313 | // FillKineticFragmentTuple create an ntuple where the voxel indexs, the atomic number and mass and the kinetic |
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314 | // energy of all the particles interacting with the phantom, are stored |
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315 | void HadrontherapyAnalysisManager::FillKineticFragmentTuple(G4int i, G4int j, G4int k, G4int A, G4double Z, G4double kinEnergy) |
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316 | { |
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317 | kinFragNtuple -> Fill(i, j, k, A, Z, kinEnergy); |
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318 | } |
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319 | |
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320 | ///////////////////////////////////////////////////////////////////////////// |
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321 | // FillKineticEnergyPrimaryNTuple creates a ntuple where the voxel indexs and the kinetic |
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322 | // energies of ONLY primary particles interacting with the phantom, are stored |
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323 | void HadrontherapyAnalysisManager::FillKineticEnergyPrimaryNTuple(G4int i, G4int j, G4int k, G4double kinEnergy) |
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324 | { |
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325 | kineticEnergyPrimaryNtuple -> Fill(i, j, k, kinEnergy); |
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326 | } |
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327 | |
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328 | ///////////////////////////////////////////////////////////////////////////// |
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329 | // This function is called only if ROOT is activated. |
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330 | // It is called by the HadrontherapyMatric.cc class file and it is used to create two ntuples containing |
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331 | // the total energy deposited and the fluence values, in each voxel and per any particle (primary beam |
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332 | // and secondaries ) |
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333 | void HadrontherapyAnalysisManager::FillVoxelFragmentTuple(G4int i, G4int j, G4int k, G4int A, G4double Z, G4double energy, G4double fluence) |
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334 | { |
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335 | // Fill the ntuple containing the voxel, mass and atomic number and the energy deposited |
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336 | doseFragNtuple -> Fill( i, j, k, A, Z, energy ); |
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337 | |
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338 | // Fill the ntuple containing the voxel, mass and atomic number and the fluence |
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339 | if (i==1 && Z==1) { |
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340 | fluenceFragNtuple -> Fill( i, j, k, A, Z, fluence ); |
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341 | |
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342 | } |
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343 | } |
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344 | |
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345 | void HadrontherapyAnalysisManager::FillLetFragmentTuple(G4int i, G4int j, G4int k, G4int A, G4double Z, G4double letT, G4double letD) |
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346 | { |
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347 | letFragNtuple -> Fill( i, j, k, A, Z, letT, letD); |
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348 | |
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349 | } |
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350 | ///////////////////////////////////////////////////////////////////////////// |
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351 | void HadrontherapyAnalysisManager::FillFragmentTuple(G4int A, G4double Z, G4double energy, G4double posX, G4double posY, G4double posZ) |
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352 | { |
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353 | fragmentNtuple->Fill(A, Z, energy, posX, posY, posZ); |
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354 | } |
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355 | |
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356 | ///////////////////////////////////////////////////////////////////////////// |
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357 | void HadrontherapyAnalysisManager::genericIonInformation(G4int a, |
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358 | G4double z, |
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359 | G4int electronOccupancy, |
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360 | G4double energy) |
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361 | { |
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362 | if (theROOTIonTuple) { |
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363 | theROOTIonTuple->Fill(a, z, electronOccupancy, energy); |
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364 | } |
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365 | } |
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366 | |
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367 | ///////////////////////////////////////////////////////////////////////////// |
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368 | void HadrontherapyAnalysisManager::startNewEvent() |
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369 | { |
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370 | eventCounter++; |
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371 | } |
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372 | ///////////////////////////////////////////////////////////////////////////// |
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373 | void HadrontherapyAnalysisManager::setGeometryMetaData(G4double endDetectorPosition, G4double waterThickness, G4double phantomCenter) |
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374 | { |
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375 | this->detectorDistance = endDetectorPosition; |
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376 | this->phantomDepth = waterThickness; |
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377 | this->phantomCenterDistance = phantomCenter; |
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378 | } |
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379 | void HadrontherapyAnalysisManager::setBeamMetaData(G4double meanKineticEnergy,G4double sigmaEnergy) |
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380 | { |
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381 | this->beamEnergy = meanKineticEnergy; |
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382 | this->energyError = sigmaEnergy; |
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383 | } |
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384 | ///////////////////////////////////////////////////////////////////////////// |
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385 | // Flush data & close the file |
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386 | void HadrontherapyAnalysisManager::flush() |
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387 | { |
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388 | if (theTFile) |
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389 | { |
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390 | theTFile -> Write(); |
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391 | theTFile -> Close(); |
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392 | } |
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393 | eventCounter = 0; |
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394 | } |
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395 | |
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396 | #endif |
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