[807] | 1 | // ------------------------------------------------------------------- |
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[1342] | 2 | // $Id: plot.C,v 1.6 2010/10/07 14:03:11 sincerti Exp $ |
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[807] | 3 | // ------------------------------------------------------------------- |
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| 4 | // |
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| 5 | // ********************************************************************* |
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| 6 | // To execute this macro under ROOT, |
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| 7 | // 1 - launch ROOT (usually type 'root' at your machine's prompt) |
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| 8 | // 2 - type '.X plot.C' at the ROOT session prompt |
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| 9 | // This macro needs five files : dose.txt, stoppingPower.txt, range.txt, |
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| 10 | // 3DDose.txt and beamPosition.txt |
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| 11 | // written by S. Incerti and O. Boissonnade, 10/04/2006 |
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| 12 | // ********************************************************************* |
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| 13 | { |
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| 14 | |
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| 15 | gROOT->Reset(); |
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| 16 | |
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| 17 | //**************** |
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| 18 | // DOSE IN NUCLEUS |
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| 19 | //**************** |
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| 20 | |
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| 21 | gStyle->SetOptStat(0000); |
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| 22 | gStyle->SetOptFit(); |
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| 23 | gStyle->SetPalette(1); |
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| 24 | gROOT->SetStyle("Plain"); |
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| 25 | Double_t scale; |
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[1342] | 26 | |
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| 27 | |
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[807] | 28 | c1 = new TCanvas ("c1","",20,20,1200,900); |
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| 29 | c1.Divide(4,3); |
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| 30 | |
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| 31 | //********************* |
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| 32 | // INTENSITY HISTOGRAMS |
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| 33 | //********************* |
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[1342] | 34 | jump: |
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[807] | 35 | |
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| 36 | FILE * fp = fopen("phantom.dat","r"); |
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| 37 | Float_t xVox, yVox, zVox, tmp, den, dose; |
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| 38 | |
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| 39 | Float_t X,Y,Z; |
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| 40 | Float_t vox = 0, mat = 0; |
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| 41 | Float_t voxelSizeX, voxelSizeY, voxelSizeZ; |
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| 42 | |
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| 43 | TH1F *h1 = new TH1F("h1","Nucleus marker intensity",100,1,300); |
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| 44 | TH1F *h11 = new TH1F("h11 ","",100,1,300); |
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| 45 | |
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| 46 | TH1F *h2 = new TH1F("h2","Cytoplasm marker intensity",100,1,300); |
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| 47 | TH1F *h20 = new TH1F("h20 ","",100,1,300); |
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| 48 | |
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| 49 | TNtuple *ntupleYXN = new TNtuple("NUCLEUS","ntuple","Y:X:vox"); |
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[1342] | 50 | TNtuple *ntupleZX = new TNtuple("CYTOPLASM","ntuple","Z:X:vox"); |
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| 51 | TNtuple *ntupleYX = new TNtuple("CYTOPLASM","ntuple","Y:X:vox"); |
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[807] | 52 | |
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| 53 | nlines=0; |
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| 54 | ncols=0; |
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| 55 | |
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| 56 | while (1) |
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| 57 | { |
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| 58 | if ( nlines == 0 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp); |
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| 59 | if ( nlines == 1 ) ncols = fscanf(fp,"%f %f %f",&voxelSizeX,&voxelSizeY,&voxelSizeZ); |
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| 60 | if ( nlines == 2 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp); |
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| 61 | if ( nlines >= 3 ) ncols = fscanf(fp,"%f %f %f %f %f %f", &X, &Y, &Z, &mat, &den, &vox); |
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| 62 | if (ncols < 0) break; |
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| 63 | |
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| 64 | X= X*voxelSizeX; |
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| 65 | Y= Y*voxelSizeY; |
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| 66 | Z= Z*voxelSizeZ; |
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| 67 | |
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| 68 | if ( mat == 2 ) // noyau |
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| 69 | { |
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| 70 | if (den==1) h1->Fill( vox ); |
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| 71 | if (den==2) h11->Fill( vox ); |
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| 72 | ntupleYXN->Fill(Y,X,vox); |
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| 73 | } |
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| 74 | if ( mat == 1 ) // cytoplasm |
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| 75 | { |
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| 76 | if (den==1) h2->Fill( vox ); |
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| 77 | if (den==2) h20->Fill( vox ); |
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| 78 | ntupleZX->Fill(Z,X,vox); |
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| 79 | ntupleYX->Fill(Y,X,vox); |
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| 80 | } |
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| 81 | nlines++; |
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| 82 | |
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| 83 | } |
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| 84 | fclose(fp); |
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| 85 | |
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| 86 | // HISTO NUCLEUS |
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| 87 | |
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| 88 | c1.cd(1); |
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| 89 | h1->Draw(); |
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| 90 | h1->GetXaxis()->SetLabelSize(0.025); |
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| 91 | h1->GetYaxis()->SetLabelSize(0.025); |
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| 92 | h1->GetXaxis()->SetTitleSize(0.035); |
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| 93 | h1->GetYaxis()->SetTitleSize(0.035); |
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| 94 | h1->GetXaxis()->SetTitleOffset(1.4); |
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| 95 | h1->GetYaxis()->SetTitleOffset(1.4); |
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| 96 | h1->GetXaxis()->SetTitle("Voxel intensity (0-255)"); |
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| 97 | h1->GetYaxis()->SetTitle("Number of events"); |
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| 98 | h1->SetLineColor(3); |
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| 99 | h1->SetFillColor(3); // green |
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| 100 | |
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| 101 | h11->SetLineColor(8); |
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| 102 | h11->SetFillColor(8); // dark green |
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| 103 | h11->Draw("same"); |
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| 104 | |
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| 105 | // HISTO CYTOPLASM |
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| 106 | |
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| 107 | c1.cd(5); |
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| 108 | h2->Draw(); |
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| 109 | h2->GetXaxis()->SetLabelSize(0.025); |
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| 110 | h2->GetYaxis()->SetLabelSize(0.025); |
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| 111 | h2->GetXaxis()->SetTitleSize(0.035); |
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| 112 | h2->GetYaxis()->SetTitleSize(0.035); |
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| 113 | h2->GetXaxis()->SetTitleOffset(1.4); |
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| 114 | h2->GetYaxis()->SetTitleOffset(1.4); |
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| 115 | h2->GetXaxis()->SetTitle("Voxel intensity (0-255)"); |
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| 116 | h2->GetYaxis()->SetTitle("Number of events"); |
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| 117 | h2->SetLineColor(2); |
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| 118 | h2->SetFillColor(2); // red |
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| 119 | |
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| 120 | h20->SetLineColor(5); |
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| 121 | h20->SetFillColor(5); // yellow (nucleoli) |
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| 122 | h20->Draw("same"); |
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| 123 | |
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| 124 | //************************* |
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| 125 | // CUMULATED CELL INTENSITY |
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| 126 | //************************* |
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| 127 | |
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| 128 | gStyle->SetOptStat(0000); |
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| 129 | gStyle->SetOptFit(); |
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| 130 | gStyle->SetPalette(1); |
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| 131 | gROOT->SetStyle("Plain"); |
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| 132 | |
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| 133 | //CYTOPLASM |
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| 134 | |
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| 135 | c1.cd(7); // axe YX |
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| 136 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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| 137 | ntupleYX->Draw("Y:X>>hist","vox","colz"); |
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| 138 | gPad->SetLogz(); |
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| 139 | hist->Draw("colz"); |
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| 140 | hist->GetXaxis()->SetLabelSize(0.025); |
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| 141 | hist->GetYaxis()->SetLabelSize(0.025); |
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| 142 | hist->GetZaxis()->SetLabelSize(0.025); |
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| 143 | hist->GetXaxis()->SetTitleSize(0.035); |
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| 144 | hist->GetYaxis()->SetTitleSize(0.035); |
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| 145 | hist->GetXaxis()->SetTitleOffset(1.4); |
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| 146 | hist->GetYaxis()->SetTitleOffset(1.4); |
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| 147 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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| 148 | hist->GetYaxis()->SetTitle("X (µm)"); |
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| 149 | hist->SetTitle("Cytoplasm intensity on transverse section"); |
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| 150 | |
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| 151 | //NUCLEUS |
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| 152 | |
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| 153 | c1.cd(3); // axe YX |
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| 154 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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| 155 | ntupleYXN->Draw("Y:X>>hist","vox","colz"); |
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| 156 | gPad->SetLogz(); |
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| 157 | hist->Draw("colz"); |
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| 158 | hist->GetXaxis()->SetLabelSize(0.025); |
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| 159 | hist->GetYaxis()->SetLabelSize(0.025); |
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| 160 | hist->GetZaxis()->SetLabelSize(0.025); |
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| 161 | hist->GetXaxis()->SetTitleSize(0.035); |
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| 162 | hist->GetYaxis()->SetTitleSize(0.035); |
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| 163 | hist->GetXaxis()->SetTitleOffset(1.4); |
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| 164 | hist->GetYaxis()->SetTitleOffset(1.4); |
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| 165 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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| 166 | hist->GetYaxis()->SetTitle("X (µm)"); |
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| 167 | hist->SetTitle("Nucleus intensity on transverse section"); |
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| 168 | |
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[1342] | 169 | // |
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| 170 | |
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| 171 | TFile f("microbeam.root"); |
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| 172 | |
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| 173 | TNtuple* ntuple0; |
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| 174 | TNtuple* ntuple1; |
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| 175 | TNtuple* ntuple2; |
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| 176 | TNtuple* ntuple3; |
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| 177 | TNtuple* ntuple4; |
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| 178 | |
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| 179 | ntuple0 = (TNtuple*)f->Get("ntuple0"); |
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| 180 | ntuple1 = (TNtuple*)f->Get("ntuple1"); |
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| 181 | ntuple2 = (TNtuple*)f->Get("ntuple2"); |
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| 182 | ntuple3 = (TNtuple*)f->Get("ntuple3"); |
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| 183 | ntuple4 = (TNtuple*)f->Get("ntuple4"); |
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| 184 | |
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| 185 | TH1F *h1 = new TH1F("h1","Dose distribution in Nucleus",100,0.001,1.); |
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| 186 | TH1F *h10 = new TH1F("h10","Dose distribution in Cytoplasm",100,0.001,.2); |
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| 187 | |
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| 188 | c1.cd(2); |
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| 189 | |
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| 190 | ntuple3->Project("h1","doseN"); |
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| 191 | scale = 1/h1->Integral(); |
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| 192 | h1->Scale(scale); |
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| 193 | h1->Draw(); |
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| 194 | h1->GetXaxis()->SetLabelSize(0.025); |
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| 195 | h1->GetYaxis()->SetLabelSize(0.025); |
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| 196 | h1->GetXaxis()->SetTitleSize(0.035); |
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| 197 | h1->GetYaxis()->SetTitleSize(0.035); |
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| 198 | h1->GetXaxis()->SetTitleOffset(1.4); |
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| 199 | h1->GetYaxis()->SetTitleOffset(1.4); |
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| 200 | h1->GetXaxis()->SetTitle("Absorbed dose (Gy)"); |
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| 201 | h1->GetYaxis()->SetTitle("Fraction of events"); |
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| 202 | h1->SetLineColor(3); |
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| 203 | h1->SetFillColor(3); |
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| 204 | |
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| 205 | //***************** |
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| 206 | // DOSE IN CYTOPLASM |
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| 207 | //***************** |
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| 208 | |
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| 209 | c1.cd(6); |
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| 210 | ntuple3->Project("h10","doseC"); |
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| 211 | scale = 1/h10->Integral(); |
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| 212 | h10->Scale(scale); |
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| 213 | h10->Draw(); |
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| 214 | h10->GetXaxis()->SetLabelSize(0.025); |
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| 215 | h10->GetYaxis()->SetLabelSize(0.025); |
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| 216 | h10->GetXaxis()->SetTitleSize(0.035); |
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| 217 | h10->GetYaxis()->SetTitleSize(0.035); |
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| 218 | h10->GetXaxis()->SetTitleOffset(1.4); |
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| 219 | h10->GetYaxis()->SetTitleOffset(1.4); |
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| 220 | h10->GetXaxis()->SetTitle("Absorbed dose (Gy)"); |
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| 221 | h10->GetYaxis()->SetTitle("Fraction of events"); |
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| 222 | h10->SetLineColor(2); |
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| 223 | h10->SetFillColor(2); |
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| 224 | |
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| 225 | //******************************** |
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| 226 | // STOPPING POWER AT CELL ENTRANCE |
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| 227 | //******************************** |
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| 228 | |
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| 229 | gStyle->SetOptStat(0000); |
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| 230 | gStyle->SetOptFit(); |
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| 231 | gStyle->SetPalette(1); |
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| 232 | gROOT->SetStyle("Plain"); |
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| 233 | |
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| 234 | Float_t d; |
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| 235 | |
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| 236 | TH1F *h2 = new TH1F("h2","Beam stopping power at cell entrance",200,0,300); |
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| 237 | |
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| 238 | c1.cd(9); |
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| 239 | ntuple0->Project("h2","sp"); |
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| 240 | scale = 1/h2->Integral(); |
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| 241 | h2->Scale(scale); |
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| 242 | h2->Draw(); |
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| 243 | h2->GetXaxis()->SetLabelSize(0.025); |
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| 244 | h2->GetYaxis()->SetLabelSize(0.025); |
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| 245 | h2->GetXaxis()->SetTitleSize(0.035); |
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| 246 | h2->GetYaxis()->SetTitleSize(0.035); |
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| 247 | h2->GetXaxis()->SetTitleOffset(1.4); |
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| 248 | h2->GetYaxis()->SetTitleOffset(1.4); |
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| 249 | h2->GetXaxis()->SetTitle("dE/dx (keV/µm)"); |
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| 250 | h2->GetYaxis()->SetTitle("Fraction of events"); |
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| 251 | h2->SetTitle("dE/dx at cell entrance"); |
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| 252 | h2->SetFillColor(4); |
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| 253 | h2->SetLineColor(4); |
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| 254 | h2->Fit("gaus"); |
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| 255 | gaus->SetLineColor(6); |
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| 256 | h2->Fit("gaus"); |
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| 257 | |
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| 258 | |
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| 259 | //************** |
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| 260 | // RANGE IN CELL |
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| 261 | //************** |
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| 262 | |
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| 263 | Double_t Xc,Zc,X1,Y1,Z1,X2,Y2,Z2; |
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| 264 | |
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| 265 | // X position of target in World |
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| 266 | Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180); |
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| 267 | |
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| 268 | // Z position of target in World |
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| 269 | Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180); |
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| 270 | |
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| 271 | // Line alignment (cf MicrobeamEMField.cc) |
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| 272 | Xc = Xc + 5.24*cos(10*TMath::Pi()/180); |
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| 273 | Zc = Zc + 5.24*sin(10*TMath::Pi()/180); |
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| 274 | |
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| 275 | TNtuple *ntupleR = new TNtuple("Rmax","ntuple","Z2:Y2:X2"); |
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| 276 | Double_t x,y,z,xx,zz; |
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| 277 | ntuple2->SetBranchAddress("x",&x); |
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| 278 | ntuple2->SetBranchAddress("y",&y); |
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| 279 | ntuple2->SetBranchAddress("z",&z); |
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| 280 | Int_t nentries = (Int_t)ntuple2->GetEntries(); |
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| 281 | for (Int_t i=0;i<nentries;i++) |
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| 282 | { |
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| 283 | ntuple2->GetEntry(i); |
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| 284 | X1=x; |
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| 285 | Y1=y; |
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| 286 | Z1=z; |
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| 287 | xx = X1-Xc; |
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| 288 | zz = Z1-Zc; |
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| 289 | Z2 = zz*cos(10*TMath::Pi()/180)-xx*sin(10*TMath::Pi()/180); |
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| 290 | X2 = zz*sin(10*TMath::Pi()/180)+xx*cos(10*TMath::Pi()/180); |
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| 291 | Y2 = Y1; |
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| 292 | ntupleR->Fill(Z2,Y2,X2); |
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| 293 | } |
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| 294 | |
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| 295 | c1.cd(10); |
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| 296 | ntupleR->Draw("X2:Z2","abs(X2)<50","surf3"); |
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| 297 | gPad->SetLogz(); |
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| 298 | /* |
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| 299 | htemp->GetXaxis()->SetLabelSize(0.025); |
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| 300 | htemp->GetYaxis()->SetLabelSize(0.025); |
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| 301 | htemp->GetZaxis()->SetLabelSize(0.025); |
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| 302 | htemp->GetXaxis()->SetTitleSize(0.035); |
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| 303 | htemp->GetYaxis()->SetTitleSize(0.035); |
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| 304 | htemp->GetXaxis()->SetTitleOffset(1.4); |
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| 305 | htemp->GetYaxis()->SetTitleOffset(1.4); |
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| 306 | htemp->GetXaxis()->SetTitle("Z (µm)"); |
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| 307 | htemp->GetYaxis()->SetTitle("X (µm)"); |
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| 308 | htemp->SetTitle("Range in cell"); |
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| 309 | */ |
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| 310 | |
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[807] | 311 | //**************** |
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| 312 | // ENERGY DEPOSITS |
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| 313 | //**************** |
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| 314 | |
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[1342] | 315 | |
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[807] | 316 | gStyle->SetOptStat(0000); |
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| 317 | gStyle->SetOptFit(); |
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| 318 | gStyle->SetPalette(1); |
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| 319 | gROOT->SetStyle("Plain"); |
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| 320 | |
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| 321 | c1.cd(11); |
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| 322 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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[1342] | 323 | ntuple4->Draw("y*0.359060:x*0.359060>>hist","doseV","contz"); |
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[807] | 324 | gPad->SetLogz(); |
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| 325 | hist->Draw("contz"); |
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| 326 | hist->GetXaxis()->SetLabelSize(0.025); |
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| 327 | hist->GetYaxis()->SetLabelSize(0.025); |
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| 328 | hist->GetZaxis()->SetLabelSize(0.025); |
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| 329 | hist->GetXaxis()->SetTitleSize(0.035); |
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| 330 | hist->GetYaxis()->SetTitleSize(0.035); |
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| 331 | hist->GetXaxis()->SetTitleOffset(1.4); |
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| 332 | hist->GetYaxis()->SetTitleOffset(1.4); |
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| 333 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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| 334 | hist->GetYaxis()->SetTitle("X (µm)"); |
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| 335 | hist->SetTitle("Mean energy deposit -transverse- (z axis in eV)"); |
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[1342] | 336 | |
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[807] | 337 | |
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| 338 | c1.cd(12); |
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| 339 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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[1342] | 340 | ntuple4->Draw("x*0.359060:z*0.162810>>hist","doseV","contz"); |
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[807] | 341 | gPad->SetLogz(); |
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| 342 | hist->Draw("contz"); |
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| 343 | hist->GetXaxis()->SetLabelSize(0.025); |
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| 344 | hist->GetYaxis()->SetLabelSize(0.025); |
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| 345 | hist->GetZaxis()->SetLabelSize(0.025); |
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| 346 | hist->GetXaxis()->SetTitleSize(0.035); |
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| 347 | hist->GetYaxis()->SetTitleSize(0.035); |
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| 348 | hist->GetXaxis()->SetTitleOffset(1.4); |
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| 349 | hist->GetYaxis()->SetTitleOffset(1.4); |
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| 350 | hist->GetXaxis()->SetTitle("Z (µm)"); |
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| 351 | hist->GetYaxis()->SetTitle("X (µm)"); |
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| 352 | hist->SetTitle("Mean energy deposit -longitudinal- (z axis in eV)"); |
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| 353 | |
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| 354 | //******************************* |
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| 355 | // BEAM POSITION AT CELL ENTRANCE |
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| 356 | //******************************* |
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| 357 | |
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| 358 | gStyle->SetOptStat(0000); |
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| 359 | gStyle->SetOptFit(); |
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| 360 | gStyle->SetPalette(1); |
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| 361 | gROOT->SetStyle("Plain"); |
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| 362 | |
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[1342] | 363 | TH1F *h77 = new TH1F("hx","h1",200,-10,10); |
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| 364 | TH1F *h88 = new TH1F("hy","h1",200,-10,10); |
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| 365 | |
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[807] | 366 | c1.cd(4); |
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[1342] | 367 | ntuple1->Project("hx","x"); |
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| 368 | scale = 1/h77->Integral(); |
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[807] | 369 | h77->Scale(scale); |
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| 370 | h77->Draw(); |
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| 371 | h77->GetXaxis()->SetLabelSize(0.025); |
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| 372 | h77->GetYaxis()->SetLabelSize(0.025); |
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| 373 | h77->GetXaxis()->SetTitleSize(0.035); |
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| 374 | h77->GetYaxis()->SetTitleSize(0.035); |
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| 375 | h77->GetXaxis()->SetTitleOffset(1.4); |
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| 376 | h77->GetYaxis()->SetTitleOffset(1.4); |
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| 377 | h77->GetXaxis()->SetTitle("Position (µm)"); |
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| 378 | h77->GetYaxis()->SetTitle("Fraction of events"); |
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| 379 | h77->SetTitle("Beam X position on cell"); |
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| 380 | h77->SetFillColor(4); |
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| 381 | h77->SetLineColor(4); |
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| 382 | gaus->SetLineColor(6); |
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| 383 | h77->Fit("gaus"); |
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| 384 | |
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| 385 | c1.cd(8); |
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[1342] | 386 | ntuple1->Project("hy","y"); |
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| 387 | scale = 1/h88->Integral(); |
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[807] | 388 | h88->Scale(scale); |
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| 389 | h88->Draw(); |
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| 390 | h88->GetXaxis()->SetLabelSize(0.025); |
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| 391 | h88->GetYaxis()->SetLabelSize(0.025); |
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| 392 | h88->GetXaxis()->SetTitleSize(0.035); |
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| 393 | h88->GetYaxis()->SetTitleSize(0.035); |
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| 394 | h88->GetXaxis()->SetTitleOffset(1.4); |
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| 395 | h88->GetYaxis()->SetTitleOffset(1.4); |
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| 396 | h88->GetXaxis()->SetTitle("Position (µm)"); |
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| 397 | h88->GetYaxis()->SetTitle("Fraction of events"); |
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| 398 | h88->SetTitle("Beam Y position on cell"); |
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| 399 | h88->SetFillColor(4); |
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| 400 | h88->SetLineColor(4); |
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| 401 | gaus->SetLineColor(6); |
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| 402 | h88->Fit("gaus"); |
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| 403 | |
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| 404 | } |
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