1 | // ------------------------------------------------------------------- |
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2 | // $Id: plot.C,v 1.4 2006/06/01 22:25:19 sincerti Exp $ |
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3 | // ------------------------------------------------------------------- |
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4 | // |
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5 | // ********************************************************************* |
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6 | // To execute this macro under ROOT, |
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7 | // 1 - launch ROOT (usually type 'root' at your machine's prompt) |
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8 | // 2 - type '.X plot.C' at the ROOT session prompt |
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9 | // This macro needs five files : dose.txt, stoppingPower.txt, range.txt, |
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10 | // 3DDose.txt and beamPosition.txt |
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11 | // written by S. Incerti and O. Boissonnade, 10/04/2006 |
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12 | // ********************************************************************* |
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13 | { |
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14 | |
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15 | gROOT->Reset(); |
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16 | |
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17 | //**************** |
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18 | // DOSE IN NUCLEUS |
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19 | //**************** |
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20 | |
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21 | gStyle->SetOptStat(0000); |
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22 | gStyle->SetOptFit(); |
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23 | gStyle->SetPalette(1); |
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24 | gROOT->SetStyle("Plain"); |
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25 | Double_t scale; |
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26 | |
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27 | c1 = new TCanvas ("c1","",20,20,1200,900); |
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28 | c1.Divide(4,3); |
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29 | |
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30 | FILE * fp = fopen("dose.txt","r"); |
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31 | Float_t nD,cD; |
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32 | Int_t ncols=0; |
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33 | Int_t nlines = 0; |
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34 | |
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35 | TH1F *h1 = new TH1F("Absorbed dose distribution in Nucleus","Dose distribution in Nucleus",100,0.001,0.5); |
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36 | TH1F *h10 = new TH1F("Absorbed dose distribution in Cytoplasm","Dose distribution in Cytoplasm",100,0.001,0.2); |
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37 | |
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38 | while (1) |
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39 | { |
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40 | ncols = fscanf(fp,"%f %f",&nD,&cD); |
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41 | if (ncols < 0) break; |
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42 | h1->Fill(nD); |
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43 | h10->Fill(cD); |
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44 | nlines++; |
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45 | } |
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46 | fclose(fp); |
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47 | |
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48 | c1.cd(2); |
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49 | scale = 1/h1->Integral(); |
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50 | h1->Scale(scale); |
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51 | h1->Draw(); |
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52 | h1->GetXaxis()->SetLabelSize(0.025); |
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53 | h1->GetYaxis()->SetLabelSize(0.025); |
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54 | h1->GetXaxis()->SetTitleSize(0.035); |
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55 | h1->GetYaxis()->SetTitleSize(0.035); |
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56 | h1->GetXaxis()->SetTitleOffset(1.4); |
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57 | h1->GetYaxis()->SetTitleOffset(1.4); |
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58 | h1->GetXaxis()->SetTitle("Absorbed dose (Gy)"); |
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59 | h1->GetYaxis()->SetTitle("Fraction of events"); |
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60 | h1->SetLineColor(3); |
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61 | h1->SetFillColor(3); |
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62 | |
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63 | //***************** |
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64 | // DOSE IN CYTOPLASM |
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65 | //***************** |
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66 | |
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67 | c1.cd(6); |
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68 | scale = 1/h10->Integral(); |
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69 | h10->Scale(scale); |
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70 | h10->Draw(); |
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71 | h10->GetXaxis()->SetLabelSize(0.025); |
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72 | h10->GetYaxis()->SetLabelSize(0.025); |
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73 | h10->GetXaxis()->SetTitleSize(0.035); |
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74 | h10->GetYaxis()->SetTitleSize(0.035); |
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75 | h10->GetXaxis()->SetTitleOffset(1.4); |
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76 | h10->GetYaxis()->SetTitleOffset(1.4); |
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77 | h10->GetXaxis()->SetTitle("Absorbed dose (Gy)"); |
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78 | h10->GetYaxis()->SetTitle("Fraction of events"); |
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79 | h10->SetLineColor(2); |
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80 | h10->SetFillColor(2); |
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81 | |
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82 | //******************************** |
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83 | // STOPPING POWER AT CELL ENTRANCE |
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84 | //******************************** |
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85 | |
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86 | gStyle->SetOptStat(0000); |
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87 | gStyle->SetOptFit(); |
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88 | gStyle->SetPalette(1); |
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89 | gROOT->SetStyle("Plain"); |
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90 | |
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91 | Float_t d; |
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92 | FILE * fp = fopen("stoppingPower.txt","r"); |
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93 | |
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94 | TH1F *h2 = new TH1F("Beam stopping Power at cell entrance","h1",200,0,300); |
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95 | while (1) |
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96 | { |
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97 | ncols = fscanf(fp,"%f",&d); |
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98 | if (ncols < 0) break; |
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99 | h2->Fill(d); |
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100 | nlines++; |
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101 | } |
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102 | fclose(fp); |
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103 | |
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104 | c1.cd(9); |
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105 | scale = 1/h2->Integral(); |
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106 | h2->Scale(scale); |
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107 | h2->Draw(); |
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108 | h2->GetXaxis()->SetLabelSize(0.025); |
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109 | h2->GetYaxis()->SetLabelSize(0.025); |
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110 | h2->GetXaxis()->SetTitleSize(0.035); |
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111 | h2->GetYaxis()->SetTitleSize(0.035); |
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112 | h2->GetXaxis()->SetTitleOffset(1.4); |
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113 | h2->GetYaxis()->SetTitleOffset(1.4); |
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114 | h2->GetXaxis()->SetTitle("dE/dx (keV/µm)"); |
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115 | h2->GetYaxis()->SetTitle("Fraction of events"); |
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116 | h2->SetTitle("dE/dx at cell entrance"); |
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117 | h2->SetFillColor(4); |
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118 | h2->SetLineColor(4); |
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119 | gaus->SetLineColor(6); |
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120 | h2->Fit("gaus"); |
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121 | |
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122 | //************** |
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123 | // RANGE IN CELL |
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124 | //************** |
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125 | |
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126 | Float_t Xc,Zc,X1,Y1,Z1,x,z,X2,Y2,Z2; |
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127 | Float_t d; |
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128 | |
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129 | // X position of target in World |
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130 | Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180); |
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131 | |
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132 | // Z position of target in World |
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133 | Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180); |
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134 | |
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135 | // Line alignment (cf MicrobeamEMField.cc) |
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136 | Xc = Xc + 5.24*cos(10*TMath::Pi()/180); |
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137 | Zc = Zc + 5.24*sin(10*TMath::Pi()/180); |
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138 | |
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139 | FILE * fp = fopen("range.txt","r"); |
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140 | |
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141 | TNtuple *ntuple = new TNtuple("Rmax","ntuple","Z2:Y2:X2"); |
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142 | |
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143 | while (1) |
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144 | { |
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145 | ncols = fscanf(fp,"%f %f %f",&X1,&Y1,&Z1); |
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146 | if (ncols < 0) break; |
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147 | x = X1-Xc; |
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148 | z = Z1-Zc; |
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149 | Z2 = z*cos(10*TMath::Pi()/180)-x*sin(10*TMath::Pi()/180); |
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150 | X2 = z*sin(10*TMath::Pi()/180)+x*cos(10*TMath::Pi()/180); |
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151 | Y2 = Y1; |
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152 | |
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153 | ntuple->Fill(Z2,Y2,X2); |
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154 | nlines++; |
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155 | } |
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156 | fclose(fp); |
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157 | |
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158 | c1.cd(10); |
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159 | ntuple->Draw("X2:Z2","abs(X2)<50","surf3"); |
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160 | gPad->SetLogz(); |
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161 | htemp->GetXaxis()->SetLabelSize(0.025); |
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162 | htemp->GetYaxis()->SetLabelSize(0.025); |
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163 | htemp->GetZaxis()->SetLabelSize(0.025); |
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164 | htemp->GetXaxis()->SetTitleSize(0.035); |
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165 | htemp->GetYaxis()->SetTitleSize(0.035); |
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166 | htemp->GetXaxis()->SetTitleOffset(1.4); |
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167 | htemp->GetYaxis()->SetTitleOffset(1.4); |
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168 | htemp->GetXaxis()->SetTitle("Z (µm)"); |
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169 | htemp->GetYaxis()->SetTitle("X (µm)"); |
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170 | htemp->SetTitle("Range in cell"); |
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171 | |
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172 | //********************* |
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173 | // INTENSITY HISTOGRAMS |
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174 | //********************* |
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175 | |
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176 | FILE * fp = fopen("phantom.dat","r"); |
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177 | Float_t xVox, yVox, zVox, tmp, den, dose; |
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178 | |
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179 | Float_t X,Y,Z; |
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180 | Float_t vox = 0, mat = 0; |
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181 | Float_t voxelSizeX, voxelSizeY, voxelSizeZ; |
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182 | |
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183 | TH1F *h1 = new TH1F("h1","Nucleus marker intensity",100,1,300); |
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184 | TH1F *h11 = new TH1F("h11 ","",100,1,300); |
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185 | |
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186 | TH1F *h2 = new TH1F("h2","Cytoplasm marker intensity",100,1,300); |
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187 | TH1F *h20 = new TH1F("h20 ","",100,1,300); |
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188 | |
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189 | TNtuple *ntupleYXN = new TNtuple("NUCLEUS","ntuple","Y:X:vox"); |
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190 | TNtuple *ntupleZX = new TNtuple("CYTOPASM","ntuple","Z:X:vox"); |
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191 | TNtuple *ntupleYX = new TNtuple("CYTOPASM","ntuple","Y:X:vox"); |
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192 | |
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193 | nlines=0; |
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194 | ncols=0; |
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195 | |
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196 | while (1) |
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197 | { |
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198 | if ( nlines == 0 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp); |
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199 | if ( nlines == 1 ) ncols = fscanf(fp,"%f %f %f",&voxelSizeX,&voxelSizeY,&voxelSizeZ); |
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200 | if ( nlines == 2 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp); |
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201 | if ( nlines >= 3 ) ncols = fscanf(fp,"%f %f %f %f %f %f", &X, &Y, &Z, &mat, &den, &vox); |
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202 | if (ncols < 0) break; |
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203 | |
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204 | X= X*voxelSizeX; |
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205 | Y= Y*voxelSizeY; |
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206 | Z= Z*voxelSizeZ; |
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207 | |
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208 | if ( mat == 2 ) // noyau |
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209 | { |
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210 | if (den==1) h1->Fill( vox ); |
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211 | if (den==2) h11->Fill( vox ); |
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212 | ntupleYXN->Fill(Y,X,vox); |
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213 | } |
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214 | if ( mat == 1 ) // cytoplasm |
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215 | { |
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216 | if (den==1) h2->Fill( vox ); |
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217 | if (den==2) h20->Fill( vox ); |
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218 | ntupleZX->Fill(Z,X,vox); |
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219 | ntupleYX->Fill(Y,X,vox); |
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220 | } |
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221 | nlines++; |
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222 | |
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223 | } |
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224 | fclose(fp); |
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225 | |
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226 | // HISTO NUCLEUS |
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227 | |
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228 | c1.cd(1); |
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229 | h1->Draw(); |
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230 | h1->GetXaxis()->SetLabelSize(0.025); |
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231 | h1->GetYaxis()->SetLabelSize(0.025); |
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232 | h1->GetXaxis()->SetTitleSize(0.035); |
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233 | h1->GetYaxis()->SetTitleSize(0.035); |
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234 | h1->GetXaxis()->SetTitleOffset(1.4); |
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235 | h1->GetYaxis()->SetTitleOffset(1.4); |
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236 | h1->GetXaxis()->SetTitle("Voxel intensity (0-255)"); |
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237 | h1->GetYaxis()->SetTitle("Number of events"); |
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238 | h1->SetLineColor(3); |
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239 | h1->SetFillColor(3); // green |
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240 | |
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241 | h11->SetLineColor(8); |
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242 | h11->SetFillColor(8); // dark green |
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243 | h11->Draw("same"); |
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244 | |
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245 | // HISTO CYTOPLASM |
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246 | |
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247 | c1.cd(5); |
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248 | h2->Draw(); |
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249 | h2->GetXaxis()->SetLabelSize(0.025); |
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250 | h2->GetYaxis()->SetLabelSize(0.025); |
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251 | h2->GetXaxis()->SetTitleSize(0.035); |
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252 | h2->GetYaxis()->SetTitleSize(0.035); |
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253 | h2->GetXaxis()->SetTitleOffset(1.4); |
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254 | h2->GetYaxis()->SetTitleOffset(1.4); |
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255 | h2->GetXaxis()->SetTitle("Voxel intensity (0-255)"); |
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256 | h2->GetYaxis()->SetTitle("Number of events"); |
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257 | h2->SetLineColor(2); |
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258 | h2->SetFillColor(2); // red |
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259 | |
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260 | h20->SetLineColor(5); |
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261 | h20->SetFillColor(5); // yellow (nucleoli) |
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262 | h20->Draw("same"); |
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263 | |
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264 | //************************* |
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265 | // CUMULATED CELL INTENSITY |
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266 | //************************* |
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267 | |
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268 | gStyle->SetOptStat(0000); |
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269 | gStyle->SetOptFit(); |
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270 | gStyle->SetPalette(1); |
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271 | gROOT->SetStyle("Plain"); |
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272 | |
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273 | //CYTOPLASM |
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274 | |
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275 | c1.cd(7); // axe YX |
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276 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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277 | ntupleYX->Draw("Y:X>>hist","vox","colz"); |
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278 | gPad->SetLogz(); |
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279 | hist->Draw("colz"); |
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280 | hist->GetXaxis()->SetLabelSize(0.025); |
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281 | hist->GetYaxis()->SetLabelSize(0.025); |
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282 | hist->GetZaxis()->SetLabelSize(0.025); |
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283 | hist->GetXaxis()->SetTitleSize(0.035); |
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284 | hist->GetYaxis()->SetTitleSize(0.035); |
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285 | hist->GetXaxis()->SetTitleOffset(1.4); |
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286 | hist->GetYaxis()->SetTitleOffset(1.4); |
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287 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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288 | hist->GetYaxis()->SetTitle("X (µm)"); |
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289 | hist->SetTitle("Cytoplasm intensity on transverse section"); |
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290 | |
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291 | //NUCLEUS |
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292 | |
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293 | c1.cd(3); // axe YX |
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294 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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295 | ntupleYXN->Draw("Y:X>>hist","vox","colz"); |
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296 | gPad->SetLogz(); |
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297 | hist->Draw("colz"); |
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298 | hist->GetXaxis()->SetLabelSize(0.025); |
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299 | hist->GetYaxis()->SetLabelSize(0.025); |
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300 | hist->GetZaxis()->SetLabelSize(0.025); |
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301 | hist->GetXaxis()->SetTitleSize(0.035); |
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302 | hist->GetYaxis()->SetTitleSize(0.035); |
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303 | hist->GetXaxis()->SetTitleOffset(1.4); |
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304 | hist->GetYaxis()->SetTitleOffset(1.4); |
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305 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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306 | hist->GetYaxis()->SetTitle("X (µm)"); |
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307 | hist->SetTitle("Nucleus intensity on transverse section"); |
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308 | |
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309 | //**************** |
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310 | // ENERGY DEPOSITS |
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311 | //**************** |
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312 | |
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313 | gStyle->SetOptStat(0000); |
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314 | gStyle->SetOptFit(); |
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315 | gStyle->SetPalette(1); |
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316 | gROOT->SetStyle("Plain"); |
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317 | |
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318 | FILE * fp = fopen("3DDose.txt","r"); |
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319 | |
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320 | TNtuple *ntuple2 = new TNtuple("CELL","ntuple","yVox:xVox:dose"); |
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321 | TNtuple *ntuple3 = new TNtuple("CELL","ntuple","xVox:zVox:dose"); |
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322 | TNtuple *ntuplezyx = new TNtuple("DOSE","ntuple","zVox:yVox:xVox:dose"); |
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323 | |
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324 | while (1) |
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325 | { |
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326 | ncols = fscanf(fp,"%f %f %f %f",&xVox, &yVox, &zVox, &dose); |
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327 | if (ncols < 0) break; |
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328 | |
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329 | xVox= xVox*voxelSizeX; |
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330 | yVox= yVox*voxelSizeY; |
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331 | zVox= zVox*voxelSizeZ; |
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332 | |
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333 | ntuple2->Fill(yVox,xVox,dose); |
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334 | ntuple3->Fill(xVox,zVox,dose); |
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335 | ntuplezyx->Fill(zVox,yVox,xVox,dose); |
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336 | } |
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337 | fclose(fp); |
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338 | |
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339 | c1.cd(11); |
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340 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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341 | ntuple2->Draw("yVox:xVox>>hist","dose","contz"); |
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342 | gPad->SetLogz(); |
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343 | hist->Draw("contz"); |
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344 | hist->GetXaxis()->SetLabelSize(0.025); |
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345 | hist->GetYaxis()->SetLabelSize(0.025); |
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346 | hist->GetZaxis()->SetLabelSize(0.025); |
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347 | hist->GetXaxis()->SetTitleSize(0.035); |
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348 | hist->GetYaxis()->SetTitleSize(0.035); |
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349 | hist->GetXaxis()->SetTitleOffset(1.4); |
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350 | hist->GetYaxis()->SetTitleOffset(1.4); |
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351 | hist->GetXaxis()->SetTitle("Y (µm)"); |
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352 | hist->GetYaxis()->SetTitle("X (µm)"); |
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353 | hist->SetTitle("Mean energy deposit -transverse- (z axis in eV)"); |
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354 | |
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355 | c1.cd(12); |
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356 | TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20); |
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357 | ntuple3->Draw("xVox:zVox>>hist","dose","contz"); |
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358 | gPad->SetLogz(); |
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359 | hist->Draw("contz"); |
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360 | hist->GetXaxis()->SetLabelSize(0.025); |
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361 | hist->GetYaxis()->SetLabelSize(0.025); |
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362 | hist->GetZaxis()->SetLabelSize(0.025); |
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363 | hist->GetXaxis()->SetTitleSize(0.035); |
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364 | hist->GetYaxis()->SetTitleSize(0.035); |
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365 | hist->GetXaxis()->SetTitleOffset(1.4); |
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366 | hist->GetYaxis()->SetTitleOffset(1.4); |
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367 | hist->GetXaxis()->SetTitle("Z (µm)"); |
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368 | hist->GetYaxis()->SetTitle("X (µm)"); |
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369 | hist->SetTitle("Mean energy deposit -longitudinal- (z axis in eV)"); |
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370 | |
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371 | //******************************* |
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372 | // BEAM POSITION AT CELL ENTRANCE |
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373 | //******************************* |
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374 | |
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375 | gStyle->SetOptStat(0000); |
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376 | gStyle->SetOptFit(); |
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377 | gStyle->SetPalette(1); |
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378 | gROOT->SetStyle("Plain"); |
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379 | |
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380 | Float_t bx, by; |
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381 | FILE * fp = fopen("beamPosition.txt","r"); |
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382 | |
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383 | TH1F *h77 = new TH1F("Beam X transverse position at cell entrance","h1",200,-10,10); |
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384 | TH1F *h88 = new TH1F("Beam Y transverse position at cell entrance","h1",200,-10,10); |
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385 | while (1) |
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386 | { |
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387 | ncols = fscanf(fp,"%f %f",&bx, &by); |
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388 | if (ncols < 0) break; |
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389 | h77->Fill(bx); |
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390 | h88->Fill(by); |
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391 | nlines++; |
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392 | } |
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393 | fclose(fp); |
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394 | |
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395 | c1.cd(4); |
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396 | scale = 1/h77->Integral(); |
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397 | h77->Scale(scale); |
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398 | h77->Draw(); |
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399 | h77->GetXaxis()->SetLabelSize(0.025); |
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400 | h77->GetYaxis()->SetLabelSize(0.025); |
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401 | h77->GetXaxis()->SetTitleSize(0.035); |
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402 | h77->GetYaxis()->SetTitleSize(0.035); |
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403 | h77->GetXaxis()->SetTitleOffset(1.4); |
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404 | h77->GetYaxis()->SetTitleOffset(1.4); |
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405 | h77->GetXaxis()->SetTitle("Position (µm)"); |
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406 | h77->GetYaxis()->SetTitle("Fraction of events"); |
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407 | h77->SetTitle("Beam X position on cell"); |
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408 | h77->SetFillColor(4); |
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409 | h77->SetLineColor(4); |
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410 | gaus->SetLineColor(6); |
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411 | h77->Fit("gaus"); |
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412 | |
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413 | c1.cd(8); |
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414 | scale = 1/h88->Integral(); |
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415 | h88->Scale(scale); |
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416 | h88->Draw(); |
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417 | h88->GetXaxis()->SetLabelSize(0.025); |
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418 | h88->GetYaxis()->SetLabelSize(0.025); |
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419 | h88->GetXaxis()->SetTitleSize(0.035); |
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420 | h88->GetYaxis()->SetTitleSize(0.035); |
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421 | h88->GetXaxis()->SetTitleOffset(1.4); |
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422 | h88->GetYaxis()->SetTitleOffset(1.4); |
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423 | h88->GetXaxis()->SetTitle("Position (µm)"); |
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424 | h88->GetYaxis()->SetTitle("Fraction of events"); |
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425 | h88->SetTitle("Beam Y position on cell"); |
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426 | h88->SetFillColor(4); |
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427 | h88->SetLineColor(4); |
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428 | gaus->SetLineColor(6); |
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429 | h88->Fit("gaus"); |
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430 | |
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431 | } |
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