source: trunk/examples/advanced/microbeam/src/MicrobeamCellParameterisation.cc@ 1238

Last change on this file since 1238 was 807, checked in by garnier, 17 years ago

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[807]1//
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25//
26// -------------------------------------------------------------------
27// $Id: MicrobeamCellParameterisation.cc,v 1.5 2006/06/29 16:05:23 gunter Exp $
28// -------------------------------------------------------------------
29
30#include "G4VPhysicalVolume.hh"
31#include "G4LogicalVolume.hh"
32
33#include "MicrobeamCellParameterisation.hh"
34
35//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
36
37MicrobeamCellParameterisation::MicrobeamCellParameterisation
38(G4int NoBoxes, G4float DimBoxX, G4float DimBoxY, G4float DimBoxZ,
39 G4Material * nucleus1, G4Material * cytoplasm1,
40 G4Material * nucleus2, G4Material * cytoplasm2,
41 G4Material * nucleus3, G4Material * cytoplasm3
42 )
43{
44 nucleusMaterial1 = nucleus1;
45 cytoplasmMaterial1 = cytoplasm1;
46 nucleusMaterial2 = nucleus2;
47 cytoplasmMaterial2 = cytoplasm2;
48 nucleusMaterial3 = nucleus3;
49 cytoplasmMaterial3 = cytoplasm3;
50
51 NoCellBoxes = NoBoxes;
52 DimCellBoxX = DimBoxX;
53 DimCellBoxY = DimBoxY;
54 DimCellBoxZ = DimBoxZ;
55
56 mapCell = new G4ThreeVector[NoCellBoxes];
57 material = new G4float[NoCellBoxes];
58 mass = new G4float[NoCellBoxes];
59
60 G4int ncols,nlines;
61 G4int shiftX, shiftY, shiftZ;
62 G4float x,y,z,mat,den,tmp,sizeZ;
63 ncols=0; nlines=0;
64
65 // READ PHANTOM
66 FILE *fMap;
67 fMap = fopen("phantom.dat","r");
68 while (1)
69 {
70 if (nlines >= 0 && nlines <=1 ) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&sizeZ);
71 if (nlines == 2) ncols = fscanf(fMap,"%i %i %i",&shiftX,&shiftY,&shiftZ); // VOXEL SHIFT IN Z ASSUMED TO BE NEGATIVE
72 if (nlines == 3) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&tmp);
73 if (nlines == 4) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&tmp);
74 if (nlines > 4) ncols = fscanf(fMap,"%f %f %f %f %f %f",&x,&y,&z,&mat,&den,&tmp);
75 if (ncols < 0) break;
76
77 G4ThreeVector v(x+shiftX,y+shiftY,z-1500/sizeZ-shiftZ); // VOXEL SHIFT TO CENTER PHANTOM
78
79 if (nlines>4)
80 {
81 mapCell[nlines-5]=v;
82 material[nlines-5]=mat;
83 mass[nlines-5]=den;
84 }
85
86 nlines++;
87 }
88 fclose(fMap);
89
90 // NUCLEUS IN GREEN
91 nucleusAttributes1 = new G4VisAttributes;
92 nucleusAttributes1->SetColour(G4Colour(0,.8,0));
93 nucleusAttributes1->SetForceSolid(false);
94
95 nucleusAttributes2 = new G4VisAttributes;
96 nucleusAttributes2->SetColour(G4Colour(0,.9,0));
97 nucleusAttributes2->SetForceSolid(false);
98
99 nucleusAttributes3 = new G4VisAttributes;
100 nucleusAttributes3->SetColour(G4Colour(0,1,0));
101 nucleusAttributes3->SetForceSolid(false);
102
103// CYTOPLASM IN RED
104 cytoplasmAttributes1 = new G4VisAttributes;
105 cytoplasmAttributes1->SetColour(G4Colour(1,0,0));
106 cytoplasmAttributes1->SetForceSolid(false);
107
108 cytoplasmAttributes2 = new G4VisAttributes; // nucleoli in yellow
109 cytoplasmAttributes2->SetColour(G4Colour(1.,1.,0));
110 cytoplasmAttributes2->SetForceSolid(false);
111
112 cytoplasmAttributes3 = new G4VisAttributes;
113 cytoplasmAttributes3->SetColour(G4Colour(1,0,0));
114 cytoplasmAttributes3->SetForceSolid(false);
115}
116
117//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
118
119MicrobeamCellParameterisation::~MicrobeamCellParameterisation()
120{
121delete[] mapCell;
122delete[] material;
123delete[] mass;
124}
125
126//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
127
128void MicrobeamCellParameterisation::ComputeTransformation
129(const G4int copyNo, G4VPhysicalVolume* physVol) const
130{
131 G4ThreeVector
132 origin(
133 mapCell[copyNo].x()*DimCellBoxX*2,
134 mapCell[copyNo].y()*DimCellBoxY*2,
135 mapCell[copyNo].z()*DimCellBoxZ*2);
136
137 physVol->SetTranslation(origin);
138}
139
140//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
141
142void MicrobeamCellParameterisation::ComputeDimensions
143(G4Box& /*trackerChamber*/, const G4int /*copyNo*/, const G4VPhysicalVolume*) const
144{
145}
146
147//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
148
149G4Material*
150MicrobeamCellParameterisation::ComputeMaterial(const G4int copyNo,
151 G4VPhysicalVolume* physVol,
152 const G4VTouchable*)
153{
154 if( material[copyNo] == 2 ) // material 2 is nucleus
155 {
156 if( mass[copyNo] == 1 )
157 {
158 physVol->SetName("physicalNucleus");
159 physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes1 );
160 return nucleusMaterial1;
161 }
162 if( mass[copyNo] == 2 )
163 {
164 physVol->SetName("physicalNucleus");
165 physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes2 );
166 return nucleusMaterial2;
167 }
168 if( mass[copyNo] == 3 )
169 {
170 physVol->SetName("physicalNucleus");
171 physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes3 );
172 return nucleusMaterial3;
173 }
174 }
175
176 else if( material[copyNo] == 1 ) // material 1 is cytoplasm
177 {
178 if( mass[copyNo] == 1 )
179 {
180 physVol->SetName("physicalCytoplasm");
181 physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes1 );
182 return cytoplasmMaterial1;
183 }
184 if( mass[copyNo] == 2 )
185 {
186 physVol->SetName("physicalNucleus"); // nucleoli
187 physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes2 );
188 return cytoplasmMaterial2;
189 }
190 if( mass[copyNo] == 3 )
191 {
192 physVol->SetName("physicalCytoplasm");
193 physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes3 );
194 return cytoplasmMaterial3;
195 }
196 }
197
198 return physVol->GetLogicalVolume()->GetMaterial();
199}
200
201
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