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24 | // ******************************************************************** |
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25 | // |
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26 | // ------------------------------------------------------------------- |
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27 | // $Id: MicrobeamCellParameterisation.cc,v 1.5 2006/06/29 16:05:23 gunter Exp $ |
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28 | // ------------------------------------------------------------------- |
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29 | |
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30 | #include "G4VPhysicalVolume.hh" |
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31 | #include "G4LogicalVolume.hh" |
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32 | |
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33 | #include "MicrobeamCellParameterisation.hh" |
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34 | |
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35 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... |
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36 | |
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37 | MicrobeamCellParameterisation::MicrobeamCellParameterisation |
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38 | (G4int NoBoxes, G4float DimBoxX, G4float DimBoxY, G4float DimBoxZ, |
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39 | G4Material * nucleus1, G4Material * cytoplasm1, |
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40 | G4Material * nucleus2, G4Material * cytoplasm2, |
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41 | G4Material * nucleus3, G4Material * cytoplasm3 |
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42 | ) |
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43 | { |
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44 | nucleusMaterial1 = nucleus1; |
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45 | cytoplasmMaterial1 = cytoplasm1; |
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46 | nucleusMaterial2 = nucleus2; |
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47 | cytoplasmMaterial2 = cytoplasm2; |
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48 | nucleusMaterial3 = nucleus3; |
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49 | cytoplasmMaterial3 = cytoplasm3; |
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50 | |
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51 | NoCellBoxes = NoBoxes; |
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52 | DimCellBoxX = DimBoxX; |
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53 | DimCellBoxY = DimBoxY; |
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54 | DimCellBoxZ = DimBoxZ; |
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55 | |
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56 | mapCell = new G4ThreeVector[NoCellBoxes]; |
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57 | material = new G4float[NoCellBoxes]; |
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58 | mass = new G4float[NoCellBoxes]; |
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59 | |
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60 | G4int ncols,nlines; |
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61 | G4int shiftX, shiftY, shiftZ; |
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62 | G4float x,y,z,mat,den,tmp,sizeZ; |
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63 | ncols=0; nlines=0; |
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64 | |
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65 | // READ PHANTOM |
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66 | FILE *fMap; |
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67 | fMap = fopen("phantom.dat","r"); |
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68 | while (1) |
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69 | { |
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70 | if (nlines >= 0 && nlines <=1 ) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&sizeZ); |
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71 | if (nlines == 2) ncols = fscanf(fMap,"%i %i %i",&shiftX,&shiftY,&shiftZ); // VOXEL SHIFT IN Z ASSUMED TO BE NEGATIVE |
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72 | if (nlines == 3) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&tmp); |
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73 | if (nlines == 4) ncols = fscanf(fMap,"%f %f %f",&tmp,&tmp,&tmp); |
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74 | if (nlines > 4) ncols = fscanf(fMap,"%f %f %f %f %f %f",&x,&y,&z,&mat,&den,&tmp); |
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75 | if (ncols < 0) break; |
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76 | |
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77 | G4ThreeVector v(x+shiftX,y+shiftY,z-1500/sizeZ-shiftZ); // VOXEL SHIFT TO CENTER PHANTOM |
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78 | |
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79 | if (nlines>4) |
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80 | { |
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81 | mapCell[nlines-5]=v; |
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82 | material[nlines-5]=mat; |
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83 | mass[nlines-5]=den; |
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84 | } |
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85 | |
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86 | nlines++; |
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87 | } |
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88 | fclose(fMap); |
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89 | |
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90 | // NUCLEUS IN GREEN |
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91 | nucleusAttributes1 = new G4VisAttributes; |
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92 | nucleusAttributes1->SetColour(G4Colour(0,.8,0)); |
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93 | nucleusAttributes1->SetForceSolid(false); |
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94 | |
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95 | nucleusAttributes2 = new G4VisAttributes; |
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96 | nucleusAttributes2->SetColour(G4Colour(0,.9,0)); |
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97 | nucleusAttributes2->SetForceSolid(false); |
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98 | |
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99 | nucleusAttributes3 = new G4VisAttributes; |
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100 | nucleusAttributes3->SetColour(G4Colour(0,1,0)); |
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101 | nucleusAttributes3->SetForceSolid(false); |
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102 | |
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103 | // CYTOPLASM IN RED |
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104 | cytoplasmAttributes1 = new G4VisAttributes; |
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105 | cytoplasmAttributes1->SetColour(G4Colour(1,0,0)); |
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106 | cytoplasmAttributes1->SetForceSolid(false); |
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107 | |
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108 | cytoplasmAttributes2 = new G4VisAttributes; // nucleoli in yellow |
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109 | cytoplasmAttributes2->SetColour(G4Colour(1.,1.,0)); |
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110 | cytoplasmAttributes2->SetForceSolid(false); |
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111 | |
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112 | cytoplasmAttributes3 = new G4VisAttributes; |
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113 | cytoplasmAttributes3->SetColour(G4Colour(1,0,0)); |
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114 | cytoplasmAttributes3->SetForceSolid(false); |
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115 | } |
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116 | |
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117 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... |
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118 | |
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119 | MicrobeamCellParameterisation::~MicrobeamCellParameterisation() |
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120 | { |
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121 | delete[] mapCell; |
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122 | delete[] material; |
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123 | delete[] mass; |
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124 | } |
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125 | |
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126 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... |
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127 | |
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128 | void MicrobeamCellParameterisation::ComputeTransformation |
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129 | (const G4int copyNo, G4VPhysicalVolume* physVol) const |
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130 | { |
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131 | G4ThreeVector |
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132 | origin( |
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133 | mapCell[copyNo].x()*DimCellBoxX*2, |
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134 | mapCell[copyNo].y()*DimCellBoxY*2, |
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135 | mapCell[copyNo].z()*DimCellBoxZ*2); |
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136 | |
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137 | physVol->SetTranslation(origin); |
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138 | } |
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139 | |
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140 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... |
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141 | |
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142 | void MicrobeamCellParameterisation::ComputeDimensions |
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143 | (G4Box& /*trackerChamber*/, const G4int /*copyNo*/, const G4VPhysicalVolume*) const |
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144 | { |
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145 | } |
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146 | |
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147 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... |
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148 | |
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149 | G4Material* |
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150 | MicrobeamCellParameterisation::ComputeMaterial(const G4int copyNo, |
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151 | G4VPhysicalVolume* physVol, |
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152 | const G4VTouchable*) |
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153 | { |
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154 | if( material[copyNo] == 2 ) // material 2 is nucleus |
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155 | { |
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156 | if( mass[copyNo] == 1 ) |
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157 | { |
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158 | physVol->SetName("physicalNucleus"); |
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159 | physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes1 ); |
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160 | return nucleusMaterial1; |
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161 | } |
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162 | if( mass[copyNo] == 2 ) |
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163 | { |
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164 | physVol->SetName("physicalNucleus"); |
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165 | physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes2 ); |
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166 | return nucleusMaterial2; |
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167 | } |
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168 | if( mass[copyNo] == 3 ) |
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169 | { |
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170 | physVol->SetName("physicalNucleus"); |
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171 | physVol->GetLogicalVolume()->SetVisAttributes( nucleusAttributes3 ); |
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172 | return nucleusMaterial3; |
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173 | } |
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174 | } |
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175 | |
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176 | else if( material[copyNo] == 1 ) // material 1 is cytoplasm |
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177 | { |
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178 | if( mass[copyNo] == 1 ) |
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179 | { |
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180 | physVol->SetName("physicalCytoplasm"); |
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181 | physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes1 ); |
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182 | return cytoplasmMaterial1; |
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183 | } |
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184 | if( mass[copyNo] == 2 ) |
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185 | { |
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186 | physVol->SetName("physicalNucleus"); // nucleoli |
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187 | physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes2 ); |
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188 | return cytoplasmMaterial2; |
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189 | } |
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190 | if( mass[copyNo] == 3 ) |
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191 | { |
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192 | physVol->SetName("physicalCytoplasm"); |
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193 | physVol->GetLogicalVolume()->SetVisAttributes( cytoplasmAttributes3 ); |
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194 | return cytoplasmMaterial3; |
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195 | } |
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196 | } |
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197 | |
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198 | return physVol->GetLogicalVolume()->GetMaterial(); |
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199 | } |
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200 | |
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201 | |
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