| 1 | //
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| 2 | // ********************************************************************
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| 3 | // * License and Disclaimer *
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| 4 | // * *
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| 5 | // * The Geant4 software is copyright of the Copyright Holders of *
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| 6 | // * the Geant4 Collaboration. It is provided under the terms and *
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| 7 | // * conditions of the Geant4 Software License, included in the file *
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| 8 | // * LICENSE and available at http://cern.ch/geant4/license . These *
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| 9 | // * include a list of copyright holders. *
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| 10 | // * *
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| 11 | // * Neither the authors of this software system, nor their employing *
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| 12 | // * institutes,nor the agencies providing financial support for this *
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| 13 | // * work make any representation or warranty, express or implied, *
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| 14 | // * regarding this software system or assume any liability for its *
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| 15 | // * use. Please see the license in the file LICENSE and URL above *
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| 16 | // * for the full disclaimer and the limitation of liability. *
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| 17 | // * *
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| 18 | // * This code implementation is the result of the scientific and *
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| 19 | // * technical work of the GEANT4 collaboration. *
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| 20 | // * By using, copying, modifying or distributing the software (or *
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| 21 | // * any work based on the software) you agree to acknowledge its *
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| 22 | // * use in resulting scientific publications, and indicate your *
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| 23 | // * acceptance of all terms of the Geant4 Software license. *
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| 24 | // ********************************************************************
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| 25 | //
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| 26 | // -------------------------------------------------------------------
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| 27 | // $Id: MicrobeamPhantomConfiguration.cc,v 1.5 2006/06/29 16:05:31 gunter Exp $
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| 28 | // -------------------------------------------------------------------
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| 29 |
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| 30 | #include "MicrobeamPhantomConfiguration.hh"
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| 31 |
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| 32 | G4int MicrobeamPhantomConfiguration::phantomTotalPixels = 0;
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| 33 | G4int MicrobeamPhantomConfiguration::nucleusTotalPixels = 0;
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| 34 | G4int MicrobeamPhantomConfiguration::cytoplasmTotalPixels = 0;
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| 35 | G4float MicrobeamPhantomConfiguration::dx = 0;
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| 36 | G4float MicrobeamPhantomConfiguration::dy = 0;
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| 37 | G4float MicrobeamPhantomConfiguration::dz = 0;
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| 38 | G4float MicrobeamPhantomConfiguration::nucleusMass = 0;
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| 39 | G4float MicrobeamPhantomConfiguration::cytoplasmMass = 0;
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| 40 |
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| 41 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 42 |
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| 43 | MicrobeamPhantomConfiguration::MicrobeamPhantomConfiguration() {
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| 44 | Initialize();
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| 45 | }
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| 46 |
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| 47 | MicrobeamPhantomConfiguration::~MicrobeamPhantomConfiguration()
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| 48 | {
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| 49 | delete[] voxelThreeVector;
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| 50 | }
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| 51 |
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| 52 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 53 |
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| 54 | G4int MicrobeamPhantomConfiguration::Initialize() {
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| 55 |
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| 56 | G4int ncols;
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| 57 | G4float vx, vy, vz, tmp, mat, den, density;
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| 58 | G4float denCyto1, denCyto2, denCyto3, denNucl1, denNucl2, denNucl3;
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| 59 | FILE* fMap;
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| 60 |
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| 61 | phantomTotalPixels=0;
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| 62 | nucleusTotalPixels=0;
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| 63 | cytoplasmTotalPixels=0;
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| 64 | dx=0;
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| 65 | dy=0;
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| 66 | dz=0;
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| 67 | nucleusMass=0;
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| 68 | cytoplasmMass=0;
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| 69 |
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| 70 | // READ PHANTOM PARAMETERS
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| 71 | fMap = fopen("phantom.dat","r");
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| 72 |
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| 73 | ncols = fscanf(fMap,"%i %i %i",&phantomTotalPixels, &nucleusTotalPixels, &cytoplasmTotalPixels);
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| 74 | ncols = fscanf(fMap,"%f %f %f",&dx, &dy, &dz);
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| 75 | ncols = fscanf(fMap,"%f %f %f",&tmp, &tmp, &tmp);
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| 76 | ncols = fscanf(fMap,"%f %f %f",&denCyto1, &denCyto2, &denCyto3);
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| 77 | ncols = fscanf(fMap,"%f %f %f",&denNucl1, &denNucl2, &denNucl3);
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| 78 | dx = dx * micrometer;
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| 79 | dy = dy * micrometer;
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| 80 | dz = dz * micrometer;
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| 81 | voxelThreeVector = new G4ThreeVector [phantomTotalPixels];
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| 82 |
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| 83 | for (G4int i=0; i<phantomTotalPixels; i++)
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| 84 | {
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| 85 | ncols = fscanf(fMap,"%f %f %f %f %f %f",&vx, &vy, &vz, &mat, &den, &tmp);
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| 86 |
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| 87 | if (mat==2) // NUCLEUS
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| 88 | {
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| 89 | if (den==1) density = denNucl1;
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| 90 | if (den==2) density = denNucl2;
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| 91 | if (den==3) density = denNucl3;
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| 92 | nucleusMass = nucleusMass + density * dx * dy * dz ;
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| 93 | }
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| 94 |
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| 95 | if (mat==1) // CYTOPLASM
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| 96 | {
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| 97 | if (den==1) density = denCyto1;
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| 98 | if (den==2) density = denCyto2;
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| 99 | if (den==3) density = denCyto3;
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| 100 | cytoplasmMass = cytoplasmMass + density * dx * dy * dz ;
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| 101 | }
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| 102 |
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| 103 | G4ThreeVector v(vx,vy,vz);
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| 104 | voxelThreeVector[i] = v;
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| 105 | }
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| 106 |
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| 107 | fclose(fMap);
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| 108 |
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| 109 | nucleusMass = nucleusMass * 1e-6 ;
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| 110 | cytoplasmMass = cytoplasmMass * 1e-6 ;
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| 111 |
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| 112 | return 0;
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| 113 | }
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| 114 |
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| 115 |
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