| 1 | //
|
|---|
| 2 | // ********************************************************************
|
|---|
| 3 | // * License and Disclaimer *
|
|---|
| 4 | // * *
|
|---|
| 5 | // * The Geant4 software is copyright of the Copyright Holders of *
|
|---|
| 6 | // * the Geant4 Collaboration. It is provided under the terms and *
|
|---|
| 7 | // * conditions of the Geant4 Software License, included in the file *
|
|---|
| 8 | // * LICENSE and available at http://cern.ch/geant4/license . These *
|
|---|
| 9 | // * include a list of copyright holders. *
|
|---|
| 10 | // * *
|
|---|
| 11 | // * Neither the authors of this software system, nor their employing *
|
|---|
| 12 | // * institutes,nor the agencies providing financial support for this *
|
|---|
| 13 | // * work make any representation or warranty, express or implied, *
|
|---|
| 14 | // * regarding this software system or assume any liability for its *
|
|---|
| 15 | // * use. Please see the license in the file LICENSE and URL above *
|
|---|
| 16 | // * for the full disclaimer and the limitation of liability. *
|
|---|
| 17 | // * *
|
|---|
| 18 | // * This code implementation is the result of the scientific and *
|
|---|
| 19 | // * technical work of the GEANT4 collaboration. *
|
|---|
| 20 | // * By using, copying, modifying or distributing the software (or *
|
|---|
| 21 | // * any work based on the software) you agree to acknowledge its *
|
|---|
| 22 | // * use in resulting scientific publications, and indicate your *
|
|---|
| 23 | // * acceptance of all terms of the Geant4 Software license. *
|
|---|
| 24 | // ********************************************************************
|
|---|
| 25 | //
|
|---|
| 26 | // -------------------------------------------------------------------
|
|---|
| 27 | // $Id: MicrobeamPhantomConfiguration.cc,v 1.9 2010/06/25 09:41:03 gunter Exp $
|
|---|
| 28 | // -------------------------------------------------------------------
|
|---|
| 29 |
|
|---|
| 30 | #include "MicrobeamPhantomConfiguration.hh"
|
|---|
| 31 |
|
|---|
| 32 | G4int MicrobeamPhantomConfiguration::phantomTotalPixels = 0;
|
|---|
| 33 | G4int MicrobeamPhantomConfiguration::nucleusTotalPixels = 0;
|
|---|
| 34 | G4int MicrobeamPhantomConfiguration::cytoplasmTotalPixels = 0;
|
|---|
| 35 | G4float MicrobeamPhantomConfiguration::dx = 0;
|
|---|
| 36 | G4float MicrobeamPhantomConfiguration::dy = 0;
|
|---|
| 37 | G4float MicrobeamPhantomConfiguration::dz = 0;
|
|---|
| 38 | G4float MicrobeamPhantomConfiguration::nucleusMass = 0;
|
|---|
| 39 | G4float MicrobeamPhantomConfiguration::cytoplasmMass = 0;
|
|---|
| 40 |
|
|---|
| 41 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
|---|
| 42 |
|
|---|
| 43 | MicrobeamPhantomConfiguration::MicrobeamPhantomConfiguration() {
|
|---|
| 44 | Initialize();
|
|---|
| 45 | }
|
|---|
| 46 |
|
|---|
| 47 | MicrobeamPhantomConfiguration::~MicrobeamPhantomConfiguration()
|
|---|
| 48 | {
|
|---|
| 49 | delete[] voxelThreeVector;
|
|---|
| 50 | }
|
|---|
| 51 |
|
|---|
| 52 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
|---|
| 53 |
|
|---|
| 54 | G4int MicrobeamPhantomConfiguration::Initialize() {
|
|---|
| 55 |
|
|---|
| 56 | G4int ncols;
|
|---|
| 57 | G4float vx, vy, vz, tmp, density;
|
|---|
| 58 | G4int den, mat;
|
|---|
| 59 | G4float denCyto1, denCyto2, denCyto3, denNucl1, denNucl2, denNucl3;
|
|---|
| 60 | FILE* fMap;
|
|---|
| 61 |
|
|---|
| 62 | phantomTotalPixels=0;
|
|---|
| 63 | nucleusTotalPixels=0;
|
|---|
| 64 | cytoplasmTotalPixels=0;
|
|---|
| 65 | dx=0;
|
|---|
| 66 | dy=0;
|
|---|
| 67 | dz=0;
|
|---|
| 68 | nucleusMass=0;
|
|---|
| 69 | cytoplasmMass=0;
|
|---|
| 70 | density=0;
|
|---|
| 71 |
|
|---|
| 72 | // READ PHANTOM PARAMETERS
|
|---|
| 73 | fMap = fopen("phantom.dat","r");
|
|---|
| 74 |
|
|---|
| 75 | ncols = fscanf(fMap,"%i %i %i",&phantomTotalPixels, &nucleusTotalPixels, &cytoplasmTotalPixels);
|
|---|
| 76 | ncols = fscanf(fMap,"%f %f %f",&dx, &dy, &dz);
|
|---|
| 77 | ncols = fscanf(fMap,"%f %f %f",&tmp, &tmp, &tmp);
|
|---|
| 78 | ncols = fscanf(fMap,"%f %f %f",&denCyto1, &denCyto2, &denCyto3);
|
|---|
| 79 | ncols = fscanf(fMap,"%f %f %f",&denNucl1, &denNucl2, &denNucl3);
|
|---|
| 80 | dx = dx * micrometer;
|
|---|
| 81 | dy = dy * micrometer;
|
|---|
| 82 | dz = dz * micrometer;
|
|---|
| 83 | voxelThreeVector = new G4ThreeVector [phantomTotalPixels];
|
|---|
| 84 |
|
|---|
| 85 | for (G4int i=0; i<phantomTotalPixels; i++)
|
|---|
| 86 | {
|
|---|
| 87 | ncols = fscanf(fMap,"%f %f %f %i %i %f",&vx, &vy, &vz, &mat, &den, &tmp);
|
|---|
| 88 |
|
|---|
| 89 | if (std::abs(mat-2)<1.e-30) // NUCLEUS
|
|---|
| 90 | {
|
|---|
| 91 | if (std::abs(den-1)<1.e-30) density = denNucl1*(g/cm3);
|
|---|
| 92 | if (std::abs(den-2)<1.e-30) density = denNucl2*(g/cm3);
|
|---|
| 93 | if (std::abs(den-3)<1.e-30) density = denNucl3*(g/cm3);
|
|---|
| 94 | nucleusMass = nucleusMass + density * dx * dy * dz ;
|
|---|
| 95 | }
|
|---|
| 96 |
|
|---|
| 97 | if (std::abs(mat-1)<1.e-30) // CYTOPLASM
|
|---|
| 98 | {
|
|---|
| 99 | if (std::abs(den-1)<1e-30) density = denCyto1*(g/cm3);
|
|---|
| 100 | if (std::abs(den-2)<1e-30) density = denCyto2*(g/cm3);
|
|---|
| 101 | if (std::abs(den-3)<1e-30) density = denCyto3*(g/cm3);
|
|---|
| 102 | cytoplasmMass = cytoplasmMass + density * dx * dy * dz ;
|
|---|
| 103 | }
|
|---|
| 104 |
|
|---|
| 105 | G4ThreeVector v(vx,vy,vz);
|
|---|
| 106 | voxelThreeVector[i] = v;
|
|---|
| 107 | }
|
|---|
| 108 |
|
|---|
| 109 | fclose(fMap);
|
|---|
| 110 |
|
|---|
| 111 | return 0;
|
|---|
| 112 | }
|
|---|
| 113 |
|
|---|
| 114 |
|
|---|
