| 1 | //
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| 2 | // ********************************************************************
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| 3 | // * License and Disclaimer *
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| 4 | // * *
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| 5 | // * The Geant4 software is copyright of the Copyright Holders of *
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| 6 | // * the Geant4 Collaboration. It is provided under the terms and *
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| 7 | // * conditions of the Geant4 Software License, included in the file *
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| 8 | // * LICENSE and available at http://cern.ch/geant4/license . These *
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| 9 | // * include a list of copyright holders. *
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| 10 | // * *
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| 11 | // * Neither the authors of this software system, nor their employing *
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| 12 | // * institutes,nor the agencies providing financial support for this *
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| 13 | // * work make any representation or warranty, express or implied, *
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| 14 | // * regarding this software system or assume any liability for its *
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| 15 | // * use. Please see the license in the file LICENSE and URL above *
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| 16 | // * for the full disclaimer and the limitation of liability. *
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| 17 | // * *
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| 18 | // * This code implementation is the result of the scientific and *
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| 19 | // * technical work of the GEANT4 collaboration. *
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| 20 | // * By using, copying, modifying or distributing the software (or *
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| 21 | // * any work based on the software) you agree to acknowledge its *
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| 22 | // * use in resulting scientific publications, and indicate your *
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| 23 | // * acceptance of all terms of the Geant4 Software license. *
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| 24 | // ********************************************************************
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| 25 | //
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| 26 | // $Id: G4DNAEmfietzoglouExcitationModel.cc,v 1.10 2010/06/08 21:50:00 sincerti Exp $
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| 27 | // GEANT4 tag $Name: geant4-09-04-beta-01 $
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| 28 | //
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| 29 |
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| 30 | #include "G4DNAEmfietzoglouExcitationModel.hh"
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| 31 |
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| 32 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 33 |
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| 34 | using namespace std;
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| 35 |
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| 36 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 37 |
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| 38 | G4DNAEmfietzoglouExcitationModel::G4DNAEmfietzoglouExcitationModel(const G4ParticleDefinition*,
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| 39 | const G4String& nam)
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| 40 | :G4VEmModel(nam),isInitialised(false)
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| 41 | {
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| 42 |
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| 43 | lowEnergyLimit = 8.23 * eV;
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| 44 | highEnergyLimit = 10 * MeV;
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| 45 | SetLowEnergyLimit(lowEnergyLimit);
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| 46 | SetHighEnergyLimit(highEnergyLimit);
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| 47 |
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| 48 | nLevels = waterExcitation.NumberOfLevels();
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| 49 |
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| 50 | verboseLevel= 0;
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| 51 | // Verbosity scale:
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| 52 | // 0 = nothing
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| 53 | // 1 = warning for energy non-conservation
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| 54 | // 2 = details of energy budget
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| 55 | // 3 = calculation of cross sections, file openings, sampling of atoms
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| 56 | // 4 = entering in methods
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| 57 |
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| 58 | if (verboseLevel > 3)
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| 59 |
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| 60 | if( verboseLevel>0 )
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| 61 | {
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| 62 | G4cout << "Emfietzoglou Excitation model is constructed " << G4endl
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| 63 | << "Energy range: "
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| 64 | << lowEnergyLimit / eV << " eV - "
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| 65 | << highEnergyLimit / MeV << " MeV"
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| 66 | << G4endl;
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| 67 | }
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| 68 | }
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| 69 |
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| 70 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 71 |
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| 72 | G4DNAEmfietzoglouExcitationModel::~G4DNAEmfietzoglouExcitationModel()
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| 73 | {}
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| 74 |
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| 75 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 76 |
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| 77 | void G4DNAEmfietzoglouExcitationModel::Initialise(const G4ParticleDefinition* /*particle*/,
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| 78 | const G4DataVector& /*cuts*/)
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| 79 | {
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| 80 |
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| 81 | if (verboseLevel > 3)
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| 82 | G4cout << "Calling G4DNAEmfietzoglouExcitationModel::Initialise()" << G4endl;
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| 83 |
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| 84 | // Energy limits
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| 85 |
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| 86 | if (LowEnergyLimit() < lowEnergyLimit)
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| 87 | {
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| 88 | G4cout << "G4DNAEmfietzoglouExcitationModel: low energy limit increased from " <<
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| 89 | LowEnergyLimit()/eV << " eV to " << lowEnergyLimit/eV << " eV" << G4endl;
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| 90 | SetLowEnergyLimit(lowEnergyLimit);
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| 91 | }
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| 92 |
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| 93 | if (HighEnergyLimit() > highEnergyLimit)
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| 94 | {
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| 95 | G4cout << "G4DNAEmfietzoglouExcitationModel: high energy limit decreased from " <<
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| 96 | HighEnergyLimit()/MeV << " MeV to " << highEnergyLimit/MeV << " MeV" << G4endl;
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| 97 | SetHighEnergyLimit(highEnergyLimit);
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| 98 | }
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| 99 |
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| 100 | //
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| 101 | if( verboseLevel>0 )
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| 102 | {
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| 103 | G4cout << "Emfietzoglou Excitation model is initialized " << G4endl
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| 104 | << "Energy range: "
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| 105 | << LowEnergyLimit() / eV << " eV - "
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| 106 | << HighEnergyLimit() / MeV << " MeV"
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| 107 | << G4endl;
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| 108 | }
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| 109 |
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| 110 | if(!isInitialised)
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| 111 | {
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| 112 | isInitialised = true;
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| 113 |
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| 114 | if(pParticleChange)
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| 115 | fParticleChangeForGamma = reinterpret_cast<G4ParticleChangeForGamma*>(pParticleChange);
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| 116 | else
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| 117 | fParticleChangeForGamma = new G4ParticleChangeForGamma();
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| 118 | }
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| 119 |
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| 120 | // InitialiseElementSelectors(particle,cuts);
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| 121 |
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| 122 | }
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| 123 |
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| 124 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 125 |
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| 126 | G4double G4DNAEmfietzoglouExcitationModel::CrossSectionPerVolume(const G4Material* material,
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| 127 | const G4ParticleDefinition* particleDefinition,
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| 128 | G4double ekin,
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| 129 | G4double,
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| 130 | G4double)
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| 131 | {
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| 132 | if (verboseLevel > 3)
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| 133 | G4cout << "Calling CrossSectionPerVolume() of G4DNAEmfietzoglouExcitationModel" << G4endl;
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| 134 |
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| 135 | // Calculate total cross section for model
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| 136 |
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| 137 | G4double sigma=0;
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| 138 |
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| 139 | if (material->GetName() == "G4_WATER")
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| 140 | {
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| 141 |
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| 142 | if (particleDefinition == G4Electron::ElectronDefinition())
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| 143 | {
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| 144 | if (ekin >= lowEnergyLimit && ekin < highEnergyLimit)
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| 145 | {
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| 146 | sigma = Sum(ekin);
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| 147 | }
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| 148 | }
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| 149 |
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| 150 | if (verboseLevel > 3)
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| 151 | {
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| 152 | G4cout << "---> Kinetic energy(eV)=" << ekin/eV << G4endl;
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| 153 | G4cout << " - Cross section per water molecule (cm^2)=" << sigma/cm/cm << G4endl;
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| 154 | G4cout << " - Cross section per water molecule (cm^-1)=" << sigma*material->GetAtomicNumDensityVector()[1]/(1./cm) << G4endl;
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| 155 | }
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| 156 |
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| 157 | }
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| 158 |
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| 159 | return sigma*material->GetAtomicNumDensityVector()[1];
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| 160 | }
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| 161 |
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| 162 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 163 |
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| 164 | void G4DNAEmfietzoglouExcitationModel::SampleSecondaries(std::vector<G4DynamicParticle*>* /*fvect*/,
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| 165 | const G4MaterialCutsCouple* /*couple*/,
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| 166 | const G4DynamicParticle* aDynamicElectron,
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| 167 | G4double,
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| 168 | G4double)
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| 169 | {
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| 170 |
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| 171 | if (verboseLevel > 3)
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| 172 | G4cout << "Calling SampleSecondaries() of G4DNAEmfietzoglouExcitationModel" << G4endl;
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| 173 |
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| 174 | G4double electronEnergy0 = aDynamicElectron->GetKineticEnergy();
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| 175 |
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| 176 | G4int level = RandomSelect(electronEnergy0);
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| 177 |
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| 178 | G4double excitationEnergy = waterExcitation.ExcitationEnergy(level);
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| 179 | G4double newEnergy = electronEnergy0 - excitationEnergy;
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| 180 |
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| 181 | if (electronEnergy0 < highEnergyLimit)
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| 182 | {
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| 183 | if (newEnergy >= lowEnergyLimit)
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| 184 | {
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| 185 | fParticleChangeForGamma->ProposeMomentumDirection(aDynamicElectron->GetMomentumDirection());
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| 186 | fParticleChangeForGamma->SetProposedKineticEnergy(newEnergy);
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| 187 | fParticleChangeForGamma->ProposeLocalEnergyDeposit(excitationEnergy);
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| 188 | }
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| 189 |
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| 190 | else
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| 191 | {
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| 192 | fParticleChangeForGamma->ProposeTrackStatus(fStopAndKill);
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| 193 | fParticleChangeForGamma->ProposeLocalEnergyDeposit(electronEnergy0);
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| 194 | }
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| 195 | }
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| 196 | }
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| 197 |
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| 198 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 199 |
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| 200 | G4double G4DNAEmfietzoglouExcitationModel::PartialCrossSection(G4double t, G4int level)
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| 201 | {
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| 202 | // Aj T
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| 203 | // Sigma(T) = ------------- (Bj / T) ln(Cj ---) [1 - Bj / T]^Pj
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| 204 | // 2 pi alpha0 R
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| 205 | //
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| 206 | // Sigma is the macroscopic cross section = N sigma, where N = number of target particles per unit volume
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| 207 | // and sigma is the microscopic cross section
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| 208 | // T is the incoming electron kinetic energy
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| 209 | // alpha0 is the Bohr Radius (Bohr_radius)
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| 210 | // Aj, Bj, Cj & Pj are parameters that can be found in Emfietzoglou's papers
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| 211 | //
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| 212 | // From Phys. Med. Biol. 48 (2003) 2355-2371, D.Emfietzoglou,
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| 213 | // Monte Carlo Simulation of the energy loss of low energy electrons in liquid Water
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| 214 | //
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| 215 | // Scaling for macroscopic cross section: number of water moleculs per unit volume
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| 216 | // const G4double sigma0 = (10. / 3.343e22) * cm2;
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| 217 |
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| 218 | const G4double density = 3.34192e+19 * mm3;
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| 219 |
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| 220 | const G4double aj[]={0.0205, 0.0209, 0.0130, 0.0026, 0.0025};
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| 221 | const G4double cj[]={4.9801, 3.3850, 2.8095, 1.9242, 3.4624};
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| 222 | const G4double pj[]={0.4757, 0.3483, 0.4443, 0.3429, 0.4379};
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| 223 | const G4double r = 13.6 * eV;
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| 224 |
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| 225 | G4double sigma = 0.;
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| 226 |
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| 227 | G4double exc = waterExcitation.ExcitationEnergy(level);
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| 228 |
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| 229 | if (t >= exc)
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| 230 | {
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| 231 | G4double excitationSigma = ( aj[level] / (2.*pi*Bohr_radius))
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| 232 | * (exc / t)
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| 233 | * std::log(cj[level]*(t/r))
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| 234 | * std::pow((1.- (exc/t)), pj[level]);
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| 235 | sigma = excitationSigma / density;
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| 236 | }
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| 237 |
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| 238 | return sigma;
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| 239 | }
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| 240 |
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| 241 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 242 |
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| 243 | G4int G4DNAEmfietzoglouExcitationModel::RandomSelect(G4double k)
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| 244 | {
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| 245 | G4int i = nLevels;
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| 246 | G4double value = 0.;
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| 247 | std::deque<double> values;
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| 248 |
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| 249 | while (i > 0)
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| 250 | {
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| 251 | i--;
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| 252 | G4double partial = PartialCrossSection(k,i);
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| 253 | values.push_front(partial);
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| 254 | value += partial;
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| 255 | }
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| 256 |
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| 257 | value *= G4UniformRand();
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| 258 |
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| 259 | i = nLevels;
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| 260 |
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| 261 | while (i > 0)
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| 262 | {
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| 263 | i--;
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| 264 | if (values[i] > value) return i;
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| 265 | value -= values[i];
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| 266 | }
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| 267 |
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| 268 | return 0;
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| 269 | }
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| 270 |
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| 271 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 272 |
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| 273 | G4double G4DNAEmfietzoglouExcitationModel::Sum(G4double k)
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| 274 | {
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| 275 | G4double totalCrossSection = 0.;
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| 276 |
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| 277 | for (G4int i=0; i<nLevels; i++)
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| 278 | {
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| 279 | totalCrossSection += PartialCrossSection(k,i);
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| 280 | }
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| 281 | return totalCrossSection;
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| 282 | }
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| 283 |
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