[1142] | 1 | // |
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| 2 | // ******************************************************************** |
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| 3 | // * License and Disclaimer * |
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| 4 | // * * |
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| 5 | // * The Geant4 software is copyright of the Copyright Holders of * |
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| 6 | // * the Geant4 Collaboration. It is provided under the terms and * |
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| 7 | // * conditions of the Geant4 Software License, included in the file * |
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| 8 | // * LICENSE and available at http://cern.ch/geant4/license . These * |
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| 9 | // * include a list of copyright holders. * |
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| 10 | // * * |
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| 11 | // * Neither the authors of this software system, nor their employing * |
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| 12 | // * institutes,nor the agencies providing financial support for this * |
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| 13 | // * work make any representation or warranty, express or implied, * |
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| 14 | // * regarding this software system or assume any liability for its * |
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| 15 | // * use. Please see the license in the file LICENSE and URL above * |
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| 16 | // * for the full disclaimer and the limitation of liability. * |
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| 17 | // * * |
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| 18 | // * This code implementation is the result of the scientific and * |
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| 19 | // * technical work of the GEANT4 collaboration. * |
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| 20 | // * By using, copying, modifying or distributing the software (or * |
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| 21 | // * any work based on the software) you agree to acknowledge its * |
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| 22 | // * use in resulting scientific publications, and indicate your * |
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| 23 | // * acceptance of all terms of the Geant4 Software license. * |
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| 24 | // ******************************************************************** |
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| 25 | // |
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| 26 | // |
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[1347] | 27 | // $Id: G4GMocrenIO.cc,v 1.6 2010/11/10 23:53:23 akimura Exp $ |
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| 28 | // GEANT4 tag $Name: geant4-09-04-ref-00 $ |
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[1142] | 29 | // |
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| 30 | // |
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| 31 | // File I/O manager class for writing or reading calcuated dose |
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| 32 | // distribution and some event information |
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| 33 | // |
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| 34 | // Created: Mar. 31, 2009 Akinori Kimura : release for the gMocrenFile driver |
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| 35 | // |
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| 36 | // Akinori Kimura |
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| 37 | // gMocren home page: |
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| 38 | // http://geant4.kek.jp/gMocren/ |
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| 39 | // |
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| 40 | // |
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| 41 | #include "G4GMocrenIO.hh" |
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| 42 | #include <iostream> |
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| 43 | #include <ctime> |
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| 44 | #include <sstream> |
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| 45 | #include <iomanip> |
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| 46 | #include <cstdlib> |
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| 47 | #include <cstring> |
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[1347] | 48 | |
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| 49 | #include "globals.hh" |
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| 50 | #include "G4VisManager.hh" |
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| 51 | |
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[1142] | 52 | #if defined(_WIN32) |
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| 53 | #define LITTLE_ENDIAN 1234 |
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| 54 | #define BYTE_ORDER LITTLE_ENDIAN |
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| 55 | #endif |
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| 56 | |
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| 57 | const int DOSERANGE = 25000; |
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| 58 | |
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| 59 | //----- GMocrenDataPrimitive class in the GMocrenDataIO class-----// |
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| 60 | template <typename T> |
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| 61 | GMocrenDataPrimitive<T>::GMocrenDataPrimitive () { |
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| 62 | clear(); |
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| 63 | } |
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| 64 | template <typename T> |
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| 65 | GMocrenDataPrimitive<T>::~GMocrenDataPrimitive () { |
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| 66 | /* |
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| 67 | std::vector<short *>::iterator itr = image.begin(); |
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| 68 | for(; itr != image.end(); itr++) { |
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| 69 | delete [] *itr; |
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| 70 | } |
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| 71 | */ |
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| 72 | } |
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| 73 | |
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| 74 | template <typename T> GMocrenDataPrimitive<T> & |
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| 75 | GMocrenDataPrimitive<T>::operator = (const GMocrenDataPrimitive<T> & _right) { |
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| 76 | for(int i = 0; i < 3; i++) { |
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| 77 | kSize[i] = _right.kSize[i]; |
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| 78 | kCenter[i] = _right.kCenter[i]; |
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| 79 | } |
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| 80 | kScale = _right.kScale; |
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| 81 | for(int i = 0; i < 2; i++) kMinmax[i] = _right.kMinmax[i]; |
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| 82 | int num = kSize[0]*kSize[1]; |
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| 83 | kImage.clear(); |
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| 84 | for(int z = 0; z < kSize[2]; z++) { |
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| 85 | T * img = new T[num]; |
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| 86 | for(int i = 0; i < num; i++) img[i] =_right.kImage[z][i]; |
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| 87 | kImage.push_back(img); |
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| 88 | } |
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| 89 | return *this; |
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| 90 | } |
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| 91 | |
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| 92 | template <typename T> GMocrenDataPrimitive<T> & |
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| 93 | GMocrenDataPrimitive<T>::operator + (const GMocrenDataPrimitive<T> & _right) { |
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| 94 | |
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| 95 | GMocrenDataPrimitive<T> rprim; |
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| 96 | bool stat = true; |
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| 97 | for(int i = 0; i < 3; i++) { |
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| 98 | if(kSize[i] != _right.kSize[i]) stat = false; |
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| 99 | if(kCenter[i] != _right.kCenter[i]) stat = false; |
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| 100 | } |
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| 101 | if(!stat) { |
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[1347] | 102 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
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| 103 | G4cout << "Warning: operator + " |
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| 104 | << " Cannot do the operator +" |
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| 105 | << G4endl; |
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[1142] | 106 | return *this; |
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| 107 | } |
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| 108 | |
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| 109 | rprim.setSize(kSize); |
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| 110 | rprim.setCenterPosition(kCenter); |
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| 111 | |
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| 112 | T mm[2] = {9e100,-9e100}; |
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| 113 | //if(mm[0] > _right.minmax[0]) mm[0] = _right.minmax[0]; |
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| 114 | //if(mm[1] < _right.minmax[1]) mm[1] = _right.minmax[1]; |
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| 115 | |
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| 116 | int num = kSize[0]*kSize[1]; |
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| 117 | for(int z = 0; z < kSize[2]; z++) { |
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| 118 | T * img = new T[num]; |
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| 119 | for(int xy = 0; xy < num; xy++) { |
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| 120 | img[xy] = kImage[z][xy] + _right.kImage[z][xy]; |
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| 121 | if(mm[0] > img[xy]) mm[0] = img[xy]; |
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| 122 | if(mm[1] < img[xy]) mm[1] = img[xy]; |
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| 123 | } |
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| 124 | rprim.addImage(img); |
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| 125 | } |
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| 126 | rprim.setMinMax(mm); |
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| 127 | |
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| 128 | T scl = mm[1]/DOSERANGE; |
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| 129 | rprim.setScale(scl); |
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| 130 | |
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| 131 | return rprim; |
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| 132 | } |
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| 133 | |
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| 134 | template <typename T> GMocrenDataPrimitive<T> & |
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| 135 | GMocrenDataPrimitive<T>::operator += (const GMocrenDataPrimitive<T> & _right) { |
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| 136 | |
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| 137 | bool stat = true; |
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| 138 | for(int i = 0; i < 3; i++) { |
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| 139 | if(kSize[i] != _right.kSize[i]) stat = false; |
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| 140 | if(kCenter[i] != _right.kCenter[i]) stat = false; |
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| 141 | } |
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| 142 | if(!stat) { |
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[1347] | 143 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
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| 144 | G4cout << "Warning: operator += " << G4endl |
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| 145 | << " Cannot do the operator +=" |
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| 146 | << G4endl; |
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[1142] | 147 | return *this; |
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| 148 | } |
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| 149 | |
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| 150 | if(kMinmax[0] > _right.kMinmax[0]) kMinmax[0] = _right.kMinmax[0]; |
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| 151 | if(kMinmax[1] < _right.kMinmax[1]) kMinmax[1] = _right.kMinmax[1]; |
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| 152 | |
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| 153 | int num = kSize[0]*kSize[1]; |
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| 154 | for(int z = 0; z < kSize[2]; z++) { |
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| 155 | for(int xy = 0; xy < num; xy++) { |
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| 156 | kImage[z][xy] += _right.kImage[z][xy]; |
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| 157 | if(kMinmax[0] > kImage[z][xy]) kMinmax[0] = kImage[z][xy]; |
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| 158 | if(kMinmax[1] < kImage[z][xy]) kMinmax[1] = kImage[z][xy]; |
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| 159 | } |
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| 160 | } |
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| 161 | |
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| 162 | kScale = kMinmax[1]/DOSERANGE; |
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| 163 | |
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| 164 | return *this; |
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| 165 | } |
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| 166 | |
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| 167 | template <typename T> |
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| 168 | void GMocrenDataPrimitive<T>::clear() { |
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| 169 | for(int i = 0; i < 3; i++) { |
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| 170 | kSize[i] = 0; |
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| 171 | kCenter[i] = 0.; |
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| 172 | } |
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| 173 | kScale = 1.; |
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| 174 | kMinmax[0] = (T)32109; |
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| 175 | kMinmax[1] = (T)-32109; |
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| 176 | |
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[1228] | 177 | clearImage(); |
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| 178 | } |
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| 179 | template <typename T> |
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| 180 | void GMocrenDataPrimitive<T>::clearImage() { |
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| 181 | typename std::vector<T *>::iterator itr; |
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| 182 | for(itr = kImage.begin(); itr != kImage.end(); itr++) { |
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[1142] | 183 | delete [] *itr; |
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[1228] | 184 | } |
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[1142] | 185 | kImage.clear(); |
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| 186 | } |
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| 187 | template <typename T> |
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| 188 | void GMocrenDataPrimitive<T>::setSize(int _size[3]) { |
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| 189 | for(int i = 0; i < 3; i++) kSize[i] = _size[i]; |
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| 190 | } |
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| 191 | template <typename T> |
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| 192 | void GMocrenDataPrimitive<T>::getSize(int _size[3]) { |
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| 193 | for(int i = 0; i < 3; i++) _size[i] = kSize[i]; |
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| 194 | } |
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| 195 | template <typename T> |
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| 196 | void GMocrenDataPrimitive<T>::setScale(double & _scale) { |
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| 197 | kScale = _scale; |
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| 198 | } |
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| 199 | template <typename T> |
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| 200 | double GMocrenDataPrimitive<T>::getScale() { |
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| 201 | return kScale; |
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| 202 | } |
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| 203 | template <typename T> |
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| 204 | void GMocrenDataPrimitive<T>::setMinMax(T _minmax[2]) { |
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| 205 | for(int i = 0; i < 2; i++) kMinmax[i] = _minmax[i]; |
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| 206 | } |
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| 207 | template <typename T> |
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| 208 | void GMocrenDataPrimitive<T>::getMinMax(T _minmax[2]) { |
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| 209 | for(int i = 0; i < 2; i++) _minmax[i] = kMinmax[i]; |
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| 210 | |
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| 211 | } |
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| 212 | template <typename T> |
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| 213 | void GMocrenDataPrimitive<T>::setImage(std::vector<T *> & _image) { |
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| 214 | kImage = _image; |
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| 215 | } |
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| 216 | template <typename T> |
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| 217 | void GMocrenDataPrimitive<T>::addImage(T * _image) { |
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| 218 | kImage.push_back(_image); |
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| 219 | } |
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| 220 | template <typename T> |
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| 221 | std::vector<T *> & GMocrenDataPrimitive<T>::getImage() { |
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| 222 | return kImage; |
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| 223 | } |
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| 224 | template <typename T> |
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| 225 | T * GMocrenDataPrimitive<T>::getImage(int _z) { |
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| 226 | if(_z >= (int)kImage.size()) return 0; |
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| 227 | return kImage[_z]; |
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| 228 | } |
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| 229 | template <typename T> |
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| 230 | void GMocrenDataPrimitive<T>::setCenterPosition(float _center[3]) { |
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| 231 | for(int i = 0; i < 3; i++) kCenter[i] = _center[i]; |
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| 232 | } |
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| 233 | template <typename T> |
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| 234 | void GMocrenDataPrimitive<T>::getCenterPosition(float _center[3]) { |
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| 235 | for(int i = 0; i < 3; i++) _center[i] = kCenter[i]; |
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| 236 | } |
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| 237 | template <typename T> |
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| 238 | void GMocrenDataPrimitive<T>::setName(std::string & _name) { |
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| 239 | kDataName = _name; |
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| 240 | } |
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| 241 | template <typename T> |
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| 242 | std::string GMocrenDataPrimitive<T>::getName() { |
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| 243 | return kDataName; |
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| 244 | } |
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| 245 | |
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| 246 | |
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| 247 | |
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| 248 | |
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| 249 | |
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| 250 | GMocrenTrack::GMocrenTrack() { |
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| 251 | kTrack.clear(); |
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| 252 | for(int i = 0; i < 3; i++) kColor[i] = 0; |
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| 253 | } |
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| 254 | |
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| 255 | void GMocrenTrack::addStep(float _startx, float _starty, float _startz, |
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| 256 | float _endx, float _endy, float _endz) { |
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| 257 | struct Step step; |
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| 258 | step.startPoint[0] = _startx; |
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| 259 | step.startPoint[1] = _starty; |
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| 260 | step.startPoint[2] = _startz; |
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| 261 | step.endPoint[0] = _endx; |
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| 262 | step.endPoint[1] = _endy; |
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| 263 | step.endPoint[2] = _endz; |
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| 264 | kTrack.push_back(step); |
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| 265 | } |
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| 266 | void GMocrenTrack::getStep(float & _startx, float & _starty, float & _startz, |
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| 267 | float & _endx, float & _endy, float & _endz, |
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| 268 | int _num) { |
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| 269 | if(_num >= (int)kTrack.size()) { |
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[1347] | 270 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
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| 271 | G4cout << "GMocrenTrack::getStep(...) Error: " |
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| 272 | << "invalid step # : " << _num << G4endl; |
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[1142] | 273 | return; |
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| 274 | } |
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| 275 | |
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| 276 | _startx = kTrack[_num].startPoint[0]; |
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| 277 | _starty = kTrack[_num].startPoint[1]; |
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| 278 | _startz = kTrack[_num].startPoint[2]; |
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| 279 | _endx = kTrack[_num].endPoint[0]; |
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| 280 | _endy = kTrack[_num].endPoint[1]; |
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| 281 | _endz = kTrack[_num].endPoint[2]; |
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| 282 | } |
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| 283 | void GMocrenTrack::translate(std::vector<float> & _translate) { |
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| 284 | std::vector<struct Step>::iterator itr = kTrack.begin(); |
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| 285 | for(; itr != kTrack.end(); itr++) { |
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| 286 | for(int i = 0; i < 3; i++ ) { |
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| 287 | itr->startPoint[i] += _translate[i]; |
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| 288 | itr->endPoint[i] += _translate[i]; |
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| 289 | } |
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| 290 | } |
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| 291 | } |
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| 292 | |
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| 293 | |
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| 294 | |
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| 295 | |
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| 296 | |
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| 297 | |
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| 298 | |
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| 299 | |
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| 300 | |
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| 301 | GMocrenDetector::GMocrenDetector() { |
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| 302 | kDetector.clear(); |
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| 303 | for(int i = 0; i < 3; i++) kColor[i] = 0; |
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| 304 | } |
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| 305 | |
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| 306 | void GMocrenDetector::addEdge(float _startx, float _starty, float _startz, |
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| 307 | float _endx, float _endy, float _endz) { |
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| 308 | struct Edge edge; |
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| 309 | edge.startPoint[0] = _startx; |
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| 310 | edge.startPoint[1] = _starty; |
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| 311 | edge.startPoint[2] = _startz; |
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| 312 | edge.endPoint[0] = _endx; |
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| 313 | edge.endPoint[1] = _endy; |
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| 314 | edge.endPoint[2] = _endz; |
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| 315 | kDetector.push_back(edge); |
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| 316 | } |
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| 317 | void GMocrenDetector::getEdge(float & _startx, float & _starty, float & _startz, |
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| 318 | float & _endx, float & _endy, float & _endz, |
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| 319 | int _num) { |
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| 320 | if(_num >= (int)kDetector.size()) { |
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[1347] | 321 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
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| 322 | G4cout << "GMocrenDetector::getEdge(...) Error: " |
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| 323 | << "invalid edge # : " << _num << G4endl; |
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[1142] | 324 | return; |
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| 325 | } |
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| 326 | |
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| 327 | _startx = kDetector[_num].startPoint[0]; |
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| 328 | _starty = kDetector[_num].startPoint[1]; |
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| 329 | _startz = kDetector[_num].startPoint[2]; |
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| 330 | _endx = kDetector[_num].endPoint[0]; |
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| 331 | _endy = kDetector[_num].endPoint[1]; |
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| 332 | _endz = kDetector[_num].endPoint[2]; |
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| 333 | } |
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| 334 | void GMocrenDetector::translate(std::vector<float> & _translate) { |
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| 335 | std::vector<struct Edge>::iterator itr = kDetector.begin(); |
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| 336 | for(; itr != kDetector.end(); itr++) { |
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| 337 | for(int i = 0; i < 3; i++) { |
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| 338 | itr->startPoint[i] += _translate[i]; |
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| 339 | itr->endPoint[i] += _translate[i]; |
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| 340 | } |
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| 341 | } |
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| 342 | } |
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| 343 | |
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| 344 | |
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| 345 | |
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| 346 | |
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| 347 | |
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| 348 | |
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| 349 | |
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| 350 | |
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| 351 | |
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| 352 | // file information |
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| 353 | std::string G4GMocrenIO::kId; |
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| 354 | std::string G4GMocrenIO::kVersion = "2.0.0"; |
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| 355 | int G4GMocrenIO::kNumberOfEvents = 0; |
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| 356 | char G4GMocrenIO::kLittleEndianInput = true; |
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| 357 | |
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| 358 | #if BYTE_ORDER == LITTLE_ENDIAN |
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| 359 | char G4GMocrenIO::kLittleEndianOutput = true; |
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| 360 | #else |
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| 361 | char G4GMocrenIO::kLittleEndianOutput = false; // Big endian |
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| 362 | #endif |
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| 363 | std::string G4GMocrenIO::kComment; |
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| 364 | // |
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| 365 | std::string G4GMocrenIO::kFileName = "dose.gdd"; |
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| 366 | |
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| 367 | // |
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| 368 | unsigned int G4GMocrenIO::kPointerToModalityData = 0; |
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| 369 | std::vector<unsigned int> G4GMocrenIO::kPointerToDoseDistData; |
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| 370 | unsigned int G4GMocrenIO::kPointerToROIData = 0; |
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| 371 | unsigned int G4GMocrenIO::kPointerToTrackData = 0; |
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| 372 | unsigned int G4GMocrenIO::kPointerToDetectorData = 0; |
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| 373 | |
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| 374 | // modality |
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| 375 | float G4GMocrenIO::kVoxelSpacing[3] = {0., 0., 0.}; |
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| 376 | class GMocrenDataPrimitive<short> G4GMocrenIO::kModality; |
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| 377 | std::vector<float> G4GMocrenIO::kModalityImageDensityMap; |
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| 378 | std::string G4GMocrenIO::kModalityUnit = "g/cm3 "; // 12 Bytes |
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| 379 | |
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| 380 | // dose |
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| 381 | std::vector<class GMocrenDataPrimitive<double> > G4GMocrenIO::kDose; |
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| 382 | std::string G4GMocrenIO::kDoseUnit = "keV "; // 12 Bytes |
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| 383 | |
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| 384 | // ROI |
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| 385 | std::vector<class GMocrenDataPrimitive<short> > G4GMocrenIO::kRoi; |
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| 386 | |
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| 387 | // track |
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| 388 | std::vector<float *> G4GMocrenIO::kSteps; |
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| 389 | std::vector<unsigned char *> G4GMocrenIO::kStepColors; |
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| 390 | std::vector<class GMocrenTrack> G4GMocrenIO::kTracks; |
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| 391 | |
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| 392 | // detector |
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| 393 | std::vector<class GMocrenDetector> G4GMocrenIO::kDetectors; |
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| 394 | |
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| 395 | // verbose |
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| 396 | int G4GMocrenIO::kVerbose = 0; |
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| 397 | |
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| 398 | const int IDLENGTH = 21; |
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| 399 | const int VERLENGTH = 6; |
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| 400 | |
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| 401 | // constructor |
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| 402 | G4GMocrenIO::G4GMocrenIO() |
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| 403 | : kTracksWillBeStored(true) { |
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| 404 | ; |
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| 405 | } |
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| 406 | |
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| 407 | // destructor |
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| 408 | G4GMocrenIO::~G4GMocrenIO() { |
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| 409 | ; |
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| 410 | } |
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| 411 | |
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| 412 | // initialize |
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| 413 | void G4GMocrenIO::initialize() { |
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| 414 | |
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| 415 | kId.clear(); |
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| 416 | kVersion = "2.0.0"; |
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| 417 | kNumberOfEvents = 0; |
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| 418 | kLittleEndianInput = true; |
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| 419 | #if BYTE_ORDER == LITTLE_ENDIAN |
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| 420 | kLittleEndianOutput = true; |
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| 421 | #else // Big endian |
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| 422 | kLittleEndianOutput = false; |
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| 423 | #endif |
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| 424 | kComment.clear(); |
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| 425 | kFileName = "dose.gdd"; |
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| 426 | kPointerToModalityData = 0; |
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| 427 | kPointerToDoseDistData.clear(); |
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| 428 | kPointerToROIData = 0; |
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| 429 | kPointerToTrackData = 0; |
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| 430 | // modality |
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| 431 | for(int i = 0; i < 3; i++) kVoxelSpacing[i] = 0.; |
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| 432 | kModality.clear(); |
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| 433 | kModalityImageDensityMap.clear(); |
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| 434 | kModalityUnit = "g/cm3 "; // 12 Bytes |
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| 435 | // dose |
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| 436 | kDose.clear(); |
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| 437 | kDoseUnit = "keV "; // 12 Bytes |
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| 438 | // ROI |
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| 439 | kRoi.clear(); |
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| 440 | // track |
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| 441 | std::vector<float *>::iterator itr; |
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| 442 | for(itr = kSteps.begin(); itr != kSteps.end(); itr++) delete [] *itr; |
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| 443 | kSteps.clear(); |
---|
| 444 | std::vector<unsigned char *>::iterator citr; |
---|
| 445 | for(citr = kStepColors.begin(); citr != kStepColors.end(); citr++) |
---|
| 446 | delete [] *citr; |
---|
| 447 | kStepColors.clear(); |
---|
| 448 | kTracksWillBeStored = true; |
---|
| 449 | |
---|
| 450 | // verbose |
---|
| 451 | kVerbose = 0; |
---|
| 452 | } |
---|
| 453 | |
---|
| 454 | bool G4GMocrenIO::storeData() { |
---|
| 455 | return storeData4(); |
---|
| 456 | } |
---|
| 457 | // |
---|
| 458 | bool G4GMocrenIO::storeData(char * _filename) { |
---|
| 459 | return storeData4(_filename); |
---|
| 460 | } |
---|
| 461 | |
---|
| 462 | bool G4GMocrenIO::storeData4() { |
---|
| 463 | |
---|
| 464 | bool DEBUG = false;// |
---|
| 465 | |
---|
| 466 | if(DEBUG || kVerbose > 0) |
---|
[1347] | 467 | G4cout << ">>>>>>> store data (ver.4) <<<<<<<" << G4endl; |
---|
[1142] | 468 | if(DEBUG || kVerbose > 0) |
---|
[1347] | 469 | G4cout << " " << kFileName << G4endl; |
---|
[1142] | 470 | |
---|
| 471 | // output file open |
---|
| 472 | std::ofstream ofile(kFileName.c_str(), |
---|
| 473 | std::ios_base::out|std::ios_base::binary); |
---|
| 474 | if(DEBUG || kVerbose > 0) |
---|
[1347] | 475 | G4cout << " file open status: " << ofile << G4endl; |
---|
[1142] | 476 | |
---|
| 477 | // file identifier |
---|
| 478 | ofile.write("gMocren ", 8); |
---|
| 479 | |
---|
| 480 | // file version |
---|
| 481 | unsigned char ver = 0x04; |
---|
| 482 | ofile.write((char *)&ver, 1); |
---|
| 483 | |
---|
| 484 | // endian |
---|
| 485 | //ofile.write((char *)&kLittleEndianOutput, sizeof(char)); |
---|
| 486 | char littleEndian = 0x01; |
---|
| 487 | ofile.write((char *)&littleEndian, sizeof(char)); |
---|
| 488 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 489 | //G4cout << "Endian: " << (int)kLittleEndianOutput << G4endl; |
---|
| 490 | G4cout << "Endian: " << (int)littleEndian << G4endl; |
---|
[1142] | 491 | } |
---|
| 492 | |
---|
| 493 | // for inverting the byte order |
---|
| 494 | float ftmp[6]; |
---|
| 495 | int itmp[6]; |
---|
| 496 | short stmp[6]; |
---|
| 497 | |
---|
| 498 | // comment length (fixed size) |
---|
| 499 | int commentLength = 1024; |
---|
| 500 | if(kLittleEndianOutput) { |
---|
| 501 | ofile.write((char *)&commentLength, 4); |
---|
| 502 | } else { |
---|
| 503 | invertByteOrder((char *)&commentLength, itmp[0]); |
---|
| 504 | ofile.write((char *)itmp, 4); |
---|
| 505 | } |
---|
| 506 | |
---|
| 507 | // comment |
---|
| 508 | char cmt[1025]; |
---|
| 509 | for(int i = 0; i < 1025; i++) cmt[i] = '\0'; |
---|
| 510 | //std::strncpy(cmt, kComment.c_str(), 1024); |
---|
| 511 | std::strcpy(cmt, kComment.c_str()); |
---|
| 512 | ofile.write((char *)cmt, 1024); |
---|
| 513 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 514 | G4cout << "Data comment : " |
---|
| 515 | << kComment << G4endl; |
---|
[1142] | 516 | } |
---|
| 517 | |
---|
| 518 | // voxel spacings for all images |
---|
| 519 | if(kLittleEndianOutput) { |
---|
| 520 | ofile.write((char *)kVoxelSpacing, 12); |
---|
| 521 | } else { |
---|
| 522 | for(int j = 0; j < 3; j++) |
---|
| 523 | invertByteOrder((char *)&kVoxelSpacing[j], ftmp[j]); |
---|
| 524 | ofile.write((char *)ftmp, 12); |
---|
| 525 | } |
---|
| 526 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 527 | G4cout << "Voxel spacing : (" |
---|
[1142] | 528 | << kVoxelSpacing[0] << ", " |
---|
| 529 | << kVoxelSpacing[1] << ", " |
---|
| 530 | << kVoxelSpacing[2] |
---|
[1347] | 531 | << ") mm " << G4endl; |
---|
[1142] | 532 | } |
---|
| 533 | |
---|
| 534 | calcPointers4(); |
---|
| 535 | if(!kTracksWillBeStored) kPointerToTrackData = 0; |
---|
| 536 | |
---|
| 537 | // offset from file starting point to the modality image data |
---|
| 538 | if(kLittleEndianOutput) { |
---|
| 539 | ofile.write((char *)&kPointerToModalityData, 4); |
---|
| 540 | } else { |
---|
| 541 | invertByteOrder((char *)&kPointerToModalityData, itmp[0]); |
---|
| 542 | ofile.write((char *)itmp, 4); |
---|
| 543 | } |
---|
| 544 | |
---|
| 545 | // # of dose distributions |
---|
| 546 | //int nDoseDist = (int)pointerToDoseDistData.size(); |
---|
| 547 | int nDoseDist = getNumDoseDist(); |
---|
| 548 | if(kLittleEndianOutput) { |
---|
| 549 | ofile.write((char *)&nDoseDist, 4); |
---|
| 550 | } else { |
---|
| 551 | invertByteOrder((char *)&nDoseDist, itmp[0]); |
---|
| 552 | ofile.write((char *)itmp, 4); |
---|
| 553 | } |
---|
| 554 | |
---|
| 555 | // offset from file starting point to the dose image data |
---|
| 556 | if(kLittleEndianOutput) { |
---|
| 557 | for(int i = 0; i < nDoseDist; i++) { |
---|
| 558 | ofile.write((char *)&kPointerToDoseDistData[i], 4); |
---|
| 559 | } |
---|
| 560 | } else { |
---|
| 561 | for(int i = 0; i < nDoseDist; i++) { |
---|
| 562 | invertByteOrder((char *)&kPointerToDoseDistData[i], itmp[0]); |
---|
| 563 | ofile.write((char *)itmp, 4); |
---|
| 564 | } |
---|
| 565 | } |
---|
| 566 | |
---|
| 567 | // offset from file starting point to the ROI image data |
---|
| 568 | if(kLittleEndianOutput) { |
---|
| 569 | ofile.write((char *)&kPointerToROIData, 4); |
---|
| 570 | } else { |
---|
| 571 | invertByteOrder((char *)&kPointerToROIData, itmp[0]); |
---|
| 572 | ofile.write((char *)itmp, 4); |
---|
| 573 | } |
---|
| 574 | |
---|
| 575 | // offset from file starting point to the track data |
---|
| 576 | if(kLittleEndianOutput) { |
---|
| 577 | ofile.write((char *)&kPointerToTrackData, 4); |
---|
| 578 | } else { |
---|
| 579 | invertByteOrder((char *)&kPointerToTrackData, itmp[0]); |
---|
| 580 | ofile.write((char *)itmp, 4); |
---|
| 581 | } |
---|
| 582 | |
---|
| 583 | // offset from file starting point to the detector data |
---|
| 584 | if(kLittleEndianOutput) { |
---|
| 585 | ofile.write((char *)&kPointerToDetectorData, 4); |
---|
| 586 | } else { |
---|
| 587 | invertByteOrder((char *)&kPointerToDetectorData, itmp[0]); |
---|
| 588 | ofile.write((char *)itmp, 4); |
---|
| 589 | } |
---|
| 590 | |
---|
| 591 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 592 | G4cout << "Each pointer to data : " |
---|
[1142] | 593 | << kPointerToModalityData << ", "; |
---|
| 594 | for(int i = 0; i < nDoseDist; i++) { |
---|
[1347] | 595 | G4cout << kPointerToDoseDistData[i] << ", "; |
---|
[1142] | 596 | } |
---|
[1347] | 597 | G4cout << kPointerToROIData << ", " |
---|
[1142] | 598 | << kPointerToTrackData << ", " |
---|
| 599 | << kPointerToDetectorData |
---|
[1347] | 600 | << G4endl; |
---|
[1142] | 601 | } |
---|
| 602 | |
---|
| 603 | //----- modality image -----// |
---|
| 604 | |
---|
| 605 | int size[3]; |
---|
| 606 | float scale; |
---|
| 607 | short minmax[2]; |
---|
| 608 | float fCenter[3]; |
---|
| 609 | int iCenter[3]; |
---|
| 610 | // modality image size |
---|
| 611 | kModality.getSize(size); |
---|
| 612 | |
---|
| 613 | if(kLittleEndianOutput) { |
---|
| 614 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 615 | } else { |
---|
| 616 | for(int j = 0; j < 3; j++) |
---|
| 617 | invertByteOrder((char *)&size[j], itmp[j]); |
---|
| 618 | ofile.write((char *)itmp, 12); |
---|
| 619 | } |
---|
| 620 | |
---|
| 621 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 622 | G4cout << "Modality image size : (" |
---|
[1142] | 623 | << size[0] << ", " |
---|
| 624 | << size[1] << ", " |
---|
| 625 | << size[2] << ")" |
---|
[1347] | 626 | << G4endl; |
---|
[1142] | 627 | } |
---|
| 628 | |
---|
| 629 | // modality image max. & min. |
---|
| 630 | kModality.getMinMax(minmax); |
---|
| 631 | if(kLittleEndianOutput) { |
---|
| 632 | ofile.write((char *)minmax, 4); |
---|
| 633 | } else { |
---|
| 634 | for(int j = 0; j < 2; j++) |
---|
| 635 | invertByteOrder((char *)&minmax[j], stmp[j]); |
---|
| 636 | ofile.write((char *)stmp, 4); |
---|
| 637 | } |
---|
| 638 | |
---|
| 639 | // modality image unit |
---|
| 640 | char munit[13] = "g/cm3\0"; |
---|
| 641 | ofile.write((char *)munit, 12); |
---|
| 642 | |
---|
| 643 | // modality image scale |
---|
| 644 | scale = (float)kModality.getScale(); |
---|
| 645 | if(kLittleEndianOutput) { |
---|
| 646 | ofile.write((char *)&scale, 4); |
---|
| 647 | } else { |
---|
| 648 | invertByteOrder((char *)&scale, ftmp[0]); |
---|
| 649 | ofile.write((char *)ftmp, 4); |
---|
| 650 | } |
---|
| 651 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 652 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 653 | << minmax[0] << ", " |
---|
| 654 | << minmax[1] << ", " |
---|
[1347] | 655 | << scale << G4endl; |
---|
[1142] | 656 | } |
---|
| 657 | |
---|
| 658 | // modality image |
---|
| 659 | int psize = size[0]*size[1]; |
---|
[1347] | 660 | if(DEBUG || kVerbose > 0) G4cout << "Modality image : "; |
---|
[1142] | 661 | for(int i = 0; i < size[2]; i++) { |
---|
| 662 | short * image = kModality.getImage(i); |
---|
| 663 | if(kLittleEndianOutput) { |
---|
| 664 | ofile.write((char *)image, psize*sizeof(short)); |
---|
| 665 | } else { |
---|
| 666 | for(int j = 0; j < psize; j++) { |
---|
| 667 | invertByteOrder((char *)&image[j], stmp[0]); |
---|
| 668 | ofile.write((char *)stmp, 2); |
---|
| 669 | } |
---|
| 670 | } |
---|
| 671 | |
---|
[1347] | 672 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << image[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 673 | } |
---|
[1347] | 674 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 675 | |
---|
| 676 | // modality desity map for CT value |
---|
| 677 | size_t msize = minmax[1] - minmax[0]+1; |
---|
| 678 | if(DEBUG || kVerbose > 0) |
---|
[1347] | 679 | G4cout << "modality image : " << minmax[0] << ", " << minmax[1] << G4endl; |
---|
[1142] | 680 | float * pdmap = new float[msize]; |
---|
| 681 | for(int i = 0; i < (int)msize; i++) pdmap[i] =kModalityImageDensityMap[i]; |
---|
| 682 | |
---|
| 683 | if(kLittleEndianOutput) { |
---|
| 684 | ofile.write((char *)pdmap, msize*sizeof(float)); |
---|
| 685 | } else { |
---|
| 686 | for(int j = 0; j < (int)msize; j++) { |
---|
| 687 | invertByteOrder((char *)&pdmap[j], ftmp[0]); |
---|
| 688 | ofile.write((char *)ftmp, 4); |
---|
| 689 | } |
---|
| 690 | } |
---|
| 691 | |
---|
| 692 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 693 | G4cout << "density map : " << std::ends; |
---|
[1142] | 694 | for(int i = 0; i < (int)msize; i+=50) |
---|
[1347] | 695 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 696 | G4cout << G4endl; |
---|
[1142] | 697 | } |
---|
| 698 | delete [] pdmap; |
---|
| 699 | |
---|
| 700 | |
---|
| 701 | //----- dose distribution image -----// |
---|
| 702 | |
---|
| 703 | if(!isDoseEmpty()) { |
---|
| 704 | |
---|
| 705 | calcDoseDistScale(); |
---|
| 706 | |
---|
| 707 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 708 | // dose distrbution image size |
---|
| 709 | kDose[ndose].getSize(size); |
---|
| 710 | if(kLittleEndianOutput) { |
---|
| 711 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 712 | } else { |
---|
| 713 | for(int j = 0; j < 3; j++) |
---|
| 714 | invertByteOrder((char *)&size[j], itmp[j]); |
---|
| 715 | ofile.write((char *)itmp, 12); |
---|
| 716 | } |
---|
| 717 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 718 | G4cout << "Dose dist. [" << ndose << "] image size : (" |
---|
[1142] | 719 | << size[0] << ", " |
---|
| 720 | << size[1] << ", " |
---|
| 721 | << size[2] << ")" |
---|
[1347] | 722 | << G4endl; |
---|
[1142] | 723 | } |
---|
| 724 | |
---|
| 725 | // dose distribution max. & min. |
---|
| 726 | getShortDoseDistMinMax(minmax, ndose); |
---|
| 727 | if(kLittleEndianOutput) { |
---|
| 728 | ofile.write((char *)minmax, 2*2); // sizeof(shorft)*2 |
---|
| 729 | } else { |
---|
| 730 | for(int j = 0; j < 2; j++) |
---|
| 731 | invertByteOrder((char *)&minmax[j], stmp[j]); |
---|
| 732 | ofile.write((char *)stmp, 4); |
---|
| 733 | } |
---|
| 734 | |
---|
| 735 | // dose distribution unit |
---|
| 736 | char cdunit[13]; |
---|
| 737 | for(int i = 0; i < 13; i++) cdunit[i] = '\0'; |
---|
| 738 | std::strcpy(cdunit, kDoseUnit.c_str()); |
---|
| 739 | ofile.write((char *)cdunit, 12); |
---|
| 740 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 741 | G4cout << "Dose dist. unit : " << kDoseUnit << G4endl; |
---|
[1142] | 742 | } |
---|
| 743 | |
---|
| 744 | // dose distribution scaling |
---|
| 745 | double dscale; |
---|
| 746 | dscale = getDoseDistScale(ndose); |
---|
| 747 | scale = float(dscale); |
---|
| 748 | if(kLittleEndianOutput) { |
---|
| 749 | ofile.write((char *)&scale, 4); |
---|
| 750 | } else { |
---|
| 751 | invertByteOrder((char *)&scale, ftmp[0]); |
---|
| 752 | ofile.write((char *)ftmp, 4); |
---|
| 753 | } |
---|
| 754 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 755 | G4cout << "Dose dist. [" << ndose |
---|
[1142] | 756 | << "] image min., max., scale : " |
---|
| 757 | << minmax[0] << ", " |
---|
| 758 | << minmax[1] << ", " |
---|
[1347] | 759 | << scale << G4endl; |
---|
[1142] | 760 | } |
---|
| 761 | |
---|
| 762 | // dose distribution image |
---|
| 763 | int dsize = size[0]*size[1]; |
---|
| 764 | short * dimage = new short[dsize]; |
---|
| 765 | for(int z = 0; z < size[2]; z++) { |
---|
| 766 | getShortDoseDist(dimage, z, ndose); |
---|
| 767 | if(kLittleEndianOutput) { |
---|
| 768 | ofile.write((char *)dimage, dsize*2); //sizeof(short) |
---|
| 769 | } else { |
---|
| 770 | for(int j = 0; j < dsize; j++) { |
---|
| 771 | invertByteOrder((char *)&dimage[j], stmp[0]); |
---|
| 772 | ofile.write((char *)stmp, 2); |
---|
| 773 | } |
---|
| 774 | } |
---|
| 775 | |
---|
| 776 | if(DEBUG || kVerbose > 0) { |
---|
| 777 | for(int j = 0; j < dsize; j++) { |
---|
| 778 | if(dimage[j] < 0) |
---|
[1347] | 779 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 780 | << dimage[j] << ", "; |
---|
| 781 | } |
---|
| 782 | } |
---|
| 783 | } |
---|
[1347] | 784 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 785 | delete [] dimage; |
---|
| 786 | |
---|
| 787 | // relative location of the dose distribution image for |
---|
| 788 | // the modality image |
---|
| 789 | getDoseDistCenterPosition(fCenter, ndose); |
---|
| 790 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 791 | if(kLittleEndianOutput) { |
---|
| 792 | ofile.write((char *)iCenter, 3*4); // 3*sizeof(int) |
---|
| 793 | } else { |
---|
| 794 | for(int j = 0; j < 3; j++) |
---|
| 795 | invertByteOrder((char *)&iCenter[j], itmp[j]); |
---|
| 796 | ofile.write((char *)itmp, 12); |
---|
| 797 | } |
---|
| 798 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 799 | G4cout << "Dose dist. [" << ndose |
---|
[1142] | 800 | << "]image relative location : (" |
---|
| 801 | << iCenter[0] << ", " |
---|
| 802 | << iCenter[1] << ", " |
---|
[1347] | 803 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 804 | } |
---|
| 805 | |
---|
| 806 | // dose distribution name |
---|
| 807 | std::string name = getDoseDistName(ndose); |
---|
| 808 | if(name.size() == 0) name = "dose"; |
---|
| 809 | name.resize(80); |
---|
| 810 | ofile.write((char *)name.c_str(), 80); |
---|
| 811 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 812 | G4cout << "Dose dist. name : " << name << G4endl; |
---|
[1142] | 813 | } |
---|
| 814 | |
---|
| 815 | } |
---|
| 816 | } |
---|
| 817 | |
---|
| 818 | //----- ROI image -----// |
---|
| 819 | if(!isROIEmpty()) { |
---|
| 820 | // ROI image size |
---|
| 821 | kRoi[0].getSize(size); |
---|
| 822 | if(kLittleEndianOutput) { |
---|
| 823 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 824 | } else { |
---|
| 825 | for(int j = 0; j < 3; j++) |
---|
| 826 | invertByteOrder((char *)&size[j], itmp[j]); |
---|
| 827 | ofile.write((char *)itmp, 12); |
---|
| 828 | } |
---|
| 829 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 830 | G4cout << "ROI image size : (" |
---|
[1142] | 831 | << size[0] << ", " |
---|
| 832 | << size[1] << ", " |
---|
| 833 | << size[2] << ")" |
---|
[1347] | 834 | << G4endl; |
---|
[1142] | 835 | } |
---|
| 836 | |
---|
| 837 | // ROI max. & min. |
---|
| 838 | kRoi[0].getMinMax(minmax); |
---|
| 839 | if(kLittleEndianOutput) { |
---|
| 840 | ofile.write((char *)minmax, sizeof(short)*2); |
---|
| 841 | } else { |
---|
| 842 | for(int j = 0; j < 2; j++) |
---|
| 843 | invertByteOrder((char *)&minmax[j], stmp[j]); |
---|
| 844 | ofile.write((char *)stmp, 4); |
---|
| 845 | } |
---|
| 846 | |
---|
| 847 | // ROI distribution scaling |
---|
| 848 | scale = (float)kRoi[0].getScale(); |
---|
| 849 | if(kLittleEndianOutput) { |
---|
| 850 | ofile.write((char *)&scale, sizeof(float)); |
---|
| 851 | } else { |
---|
| 852 | invertByteOrder((char *)&scale, ftmp[0]); |
---|
| 853 | ofile.write((char *)ftmp, 4); |
---|
| 854 | } |
---|
| 855 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 856 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 857 | << minmax[0] << ", " |
---|
| 858 | << minmax[1] << ", " |
---|
[1347] | 859 | << scale << G4endl; |
---|
[1142] | 860 | } |
---|
| 861 | |
---|
| 862 | // ROI image |
---|
| 863 | int rsize = size[0]*size[1]; |
---|
| 864 | for(int i = 0; i < size[2]; i++) { |
---|
| 865 | short * rimage = kRoi[0].getImage(i); |
---|
| 866 | if(kLittleEndianOutput) { |
---|
| 867 | ofile.write((char *)rimage, rsize*sizeof(short)); |
---|
| 868 | } else { |
---|
| 869 | for(int j = 0; j < rsize; j++) { |
---|
| 870 | invertByteOrder((char *)&rimage[j], stmp[0]); |
---|
| 871 | ofile.write((char *)stmp, 2); |
---|
| 872 | } |
---|
| 873 | } |
---|
| 874 | |
---|
| 875 | } |
---|
| 876 | |
---|
| 877 | // ROI relative location |
---|
| 878 | kRoi[0].getCenterPosition(fCenter); |
---|
| 879 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 880 | if(kLittleEndianOutput) { |
---|
| 881 | ofile.write((char *)iCenter, 3*sizeof(int)); |
---|
| 882 | } else { |
---|
| 883 | for(int j = 0; j < 3; j++) |
---|
| 884 | invertByteOrder((char *)&iCenter[j], itmp[j]); |
---|
| 885 | ofile.write((char *)itmp, 12); |
---|
| 886 | } |
---|
| 887 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 888 | G4cout << "ROI image relative location : (" |
---|
[1142] | 889 | << iCenter[0] << ", " |
---|
| 890 | << iCenter[1] << ", " |
---|
[1347] | 891 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 892 | } |
---|
| 893 | } |
---|
| 894 | |
---|
| 895 | //----- track information -----// |
---|
| 896 | // number of track |
---|
| 897 | if(kPointerToTrackData > 0) { |
---|
| 898 | |
---|
| 899 | int ntrk = kTracks.size(); |
---|
| 900 | if(kLittleEndianOutput) { |
---|
| 901 | ofile.write((char *)&ntrk, sizeof(int)); |
---|
| 902 | } else { |
---|
| 903 | invertByteOrder((char *)&ntrk, itmp[0]); |
---|
| 904 | ofile.write((char *)itmp, 4); |
---|
| 905 | } |
---|
| 906 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 907 | G4cout << "# of tracks : " |
---|
| 908 | << ntrk << G4endl; |
---|
[1142] | 909 | } |
---|
| 910 | |
---|
| 911 | for(int nt = 0; nt < ntrk; nt++) { |
---|
| 912 | |
---|
| 913 | // # of steps in a track |
---|
| 914 | int nsteps = kTracks[nt].getNumberOfSteps(); |
---|
| 915 | if(kLittleEndianOutput) { |
---|
| 916 | ofile.write((char *)&nsteps, sizeof(int)); |
---|
| 917 | } else { |
---|
| 918 | invertByteOrder((char *)&nsteps, itmp[0]); |
---|
| 919 | ofile.write((char *)itmp, 4); |
---|
| 920 | } |
---|
| 921 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 922 | G4cout << "# of steps : " << nsteps << G4endl; |
---|
[1142] | 923 | } |
---|
| 924 | |
---|
| 925 | // track color |
---|
| 926 | unsigned char tcolor[3]; |
---|
| 927 | kTracks[nt].getColor(tcolor); |
---|
| 928 | ofile.write((char *)tcolor, 3); |
---|
| 929 | |
---|
| 930 | // steps |
---|
| 931 | float stepPoints[6]; |
---|
| 932 | for(int ns = 0; ns < nsteps; ns++) { |
---|
| 933 | kTracks[nt].getStep(stepPoints[0], stepPoints[1], stepPoints[2], |
---|
| 934 | stepPoints[3], stepPoints[4], stepPoints[5], |
---|
| 935 | ns); |
---|
| 936 | |
---|
| 937 | if(kLittleEndianOutput) { |
---|
| 938 | ofile.write((char *)stepPoints, sizeof(float)*6); |
---|
| 939 | } else { |
---|
| 940 | for(int j = 0; j < 6; j++) |
---|
| 941 | invertByteOrder((char *)&stepPoints[j], ftmp[j]); |
---|
| 942 | ofile.write((char *)ftmp, 24); |
---|
| 943 | } |
---|
| 944 | } |
---|
| 945 | } |
---|
| 946 | } |
---|
| 947 | |
---|
| 948 | //----- detector information -----// |
---|
| 949 | // number of detectors |
---|
| 950 | if(kPointerToDetectorData > 0) { |
---|
| 951 | int ndet = kDetectors.size(); |
---|
| 952 | if(kLittleEndianOutput) { |
---|
| 953 | ofile.write((char *)&ndet, sizeof(int)); |
---|
| 954 | } else { |
---|
| 955 | invertByteOrder((char *)&ndet, itmp[0]); |
---|
| 956 | ofile.write((char *)itmp, 4); |
---|
| 957 | } |
---|
| 958 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 959 | G4cout << "# of detectors : " |
---|
| 960 | << ndet << G4endl; |
---|
[1142] | 961 | } |
---|
| 962 | |
---|
| 963 | for(int nd = 0; nd < ndet; nd++) { |
---|
| 964 | |
---|
| 965 | // # of edges of a detector |
---|
| 966 | int nedges = kDetectors[nd].getNumberOfEdges(); |
---|
| 967 | if(kLittleEndianOutput) { |
---|
| 968 | ofile.write((char *)&nedges, sizeof(int)); |
---|
| 969 | } else { |
---|
| 970 | invertByteOrder((char *)&nedges, itmp[0]); |
---|
| 971 | ofile.write((char *)itmp, 4); |
---|
| 972 | } |
---|
| 973 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 974 | G4cout << "# of edges in a detector : " << nedges << G4endl; |
---|
[1142] | 975 | } |
---|
| 976 | |
---|
| 977 | // edges |
---|
| 978 | float edgePoints[6]; |
---|
| 979 | for(int ne = 0; ne < nedges; ne++) { |
---|
| 980 | kDetectors[nd].getEdge(edgePoints[0], edgePoints[1], edgePoints[2], |
---|
| 981 | edgePoints[3], edgePoints[4], edgePoints[5], |
---|
| 982 | ne); |
---|
| 983 | |
---|
| 984 | if(kLittleEndianOutput) { |
---|
| 985 | ofile.write((char *)edgePoints, sizeof(float)*6); |
---|
| 986 | } else { |
---|
| 987 | for(int j = 0; j < 6; j++) |
---|
| 988 | invertByteOrder((char *)&edgePoints[j], ftmp[j]); |
---|
| 989 | ofile.write((char *)ftmp, 24); |
---|
| 990 | } |
---|
| 991 | |
---|
| 992 | if(DEBUG || kVerbose > 0) { |
---|
| 993 | if(ne < 1) { |
---|
[1347] | 994 | G4cout << " edge : (" << edgePoints[0] << ", " |
---|
[1142] | 995 | << edgePoints[1] << ", " |
---|
| 996 | << edgePoints[2] << ") - (" |
---|
| 997 | << edgePoints[3] << ", " |
---|
| 998 | << edgePoints[4] << ", " |
---|
[1347] | 999 | << edgePoints[5] << ")" << G4endl; |
---|
[1142] | 1000 | } |
---|
| 1001 | } |
---|
| 1002 | } |
---|
| 1003 | |
---|
| 1004 | // detector color |
---|
| 1005 | unsigned char dcolor[3]; |
---|
| 1006 | kDetectors[nd].getColor(dcolor); |
---|
| 1007 | ofile.write((char *)dcolor, 3); |
---|
| 1008 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1009 | G4cout << " rgb : (" << (int)dcolor[0] << ", " |
---|
[1142] | 1010 | << (int)dcolor[1] << ", " |
---|
[1347] | 1011 | << (int)dcolor[2] << ")" << G4endl; |
---|
[1142] | 1012 | } |
---|
| 1013 | |
---|
| 1014 | // detector name |
---|
| 1015 | std::string dname = kDetectors[nd].getName(); |
---|
| 1016 | dname.resize(80); |
---|
| 1017 | ofile.write((char *)dname.c_str(), 80); |
---|
| 1018 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1019 | G4cout << " detector name : " << dname << G4endl; |
---|
[1142] | 1020 | |
---|
| 1021 | } |
---|
| 1022 | } |
---|
| 1023 | } |
---|
| 1024 | |
---|
| 1025 | // file end mark |
---|
| 1026 | ofile.write("END", 3); |
---|
| 1027 | |
---|
| 1028 | ofile.close(); |
---|
| 1029 | if(DEBUG || kVerbose > 0) |
---|
[1347] | 1030 | G4cout << ">>>> closed gdd file: " << kFileName << G4endl; |
---|
[1142] | 1031 | |
---|
| 1032 | return true; |
---|
| 1033 | } |
---|
| 1034 | bool G4GMocrenIO::storeData3() { |
---|
| 1035 | |
---|
[1347] | 1036 | if(kVerbose > 0) G4cout << ">>>>>>> store data (ver.3) <<<<<<<" << G4endl; |
---|
| 1037 | if(kVerbose > 0) G4cout << " " << kFileName << G4endl; |
---|
[1142] | 1038 | |
---|
| 1039 | bool DEBUG = false;// |
---|
| 1040 | |
---|
| 1041 | // output file open |
---|
| 1042 | std::ofstream ofile(kFileName.c_str(), |
---|
| 1043 | std::ios_base::out|std::ios_base::binary); |
---|
| 1044 | |
---|
| 1045 | // file identifier |
---|
| 1046 | ofile.write("gMocren ", 8); |
---|
| 1047 | |
---|
| 1048 | // file version |
---|
| 1049 | unsigned char ver = 0x03; |
---|
| 1050 | ofile.write((char *)&ver, 1); |
---|
| 1051 | |
---|
| 1052 | // endian |
---|
| 1053 | ofile.write((char *)&kLittleEndianOutput, sizeof(char)); |
---|
| 1054 | |
---|
| 1055 | // comment length (fixed size) |
---|
| 1056 | int commentLength = 1024; |
---|
| 1057 | ofile.write((char *)&commentLength, 4); |
---|
| 1058 | |
---|
| 1059 | // comment |
---|
| 1060 | char cmt[1025]; |
---|
| 1061 | std::strncpy(cmt, kComment.c_str(), 1024); |
---|
| 1062 | ofile.write((char *)cmt, 1024); |
---|
| 1063 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1064 | G4cout << "Data comment : " |
---|
| 1065 | << kComment << G4endl; |
---|
[1142] | 1066 | } |
---|
| 1067 | |
---|
| 1068 | // voxel spacings for all images |
---|
| 1069 | ofile.write((char *)kVoxelSpacing, 12); |
---|
| 1070 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1071 | G4cout << "Voxel spacing : (" |
---|
[1142] | 1072 | << kVoxelSpacing[0] << ", " |
---|
| 1073 | << kVoxelSpacing[1] << ", " |
---|
| 1074 | << kVoxelSpacing[2] |
---|
[1347] | 1075 | << ") mm " << G4endl; |
---|
[1142] | 1076 | } |
---|
| 1077 | |
---|
| 1078 | calcPointers3(); |
---|
| 1079 | |
---|
| 1080 | // offset from file starting point to the modality image data |
---|
| 1081 | ofile.write((char *)&kPointerToModalityData, 4); |
---|
| 1082 | |
---|
| 1083 | // # of dose distributions |
---|
| 1084 | //int nDoseDist = (int)pointerToDoseDistData.size(); |
---|
| 1085 | int nDoseDist = getNumDoseDist(); |
---|
| 1086 | ofile.write((char *)&nDoseDist, 4); |
---|
| 1087 | |
---|
| 1088 | // offset from file starting point to the dose image data |
---|
| 1089 | for(int i = 0; i < nDoseDist; i++) { |
---|
| 1090 | ofile.write((char *)&kPointerToDoseDistData[i], 4); |
---|
| 1091 | } |
---|
| 1092 | |
---|
| 1093 | // offset from file starting point to the ROI image data |
---|
| 1094 | ofile.write((char *)&kPointerToROIData, 4); |
---|
| 1095 | |
---|
| 1096 | // offset from file starting point to the track data |
---|
| 1097 | ofile.write((char *)&kPointerToTrackData, 4); |
---|
| 1098 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1099 | G4cout << "Each pointer to data : " |
---|
[1142] | 1100 | << kPointerToModalityData << ", "; |
---|
| 1101 | for(int i = 0; i < nDoseDist; i++) { |
---|
[1347] | 1102 | G4cout << kPointerToDoseDistData[i] << ", "; |
---|
[1142] | 1103 | } |
---|
[1347] | 1104 | G4cout << kPointerToROIData << ", " |
---|
| 1105 | << kPointerToTrackData << G4endl; |
---|
[1142] | 1106 | } |
---|
| 1107 | |
---|
| 1108 | //----- modality image -----// |
---|
| 1109 | |
---|
| 1110 | int size[3]; |
---|
| 1111 | float scale; |
---|
| 1112 | short minmax[2]; |
---|
| 1113 | float fCenter[3]; |
---|
| 1114 | int iCenter[3]; |
---|
| 1115 | // modality image size |
---|
| 1116 | kModality.getSize(size); |
---|
| 1117 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1118 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1119 | G4cout << "Modality image size : (" |
---|
[1142] | 1120 | << size[0] << ", " |
---|
| 1121 | << size[1] << ", " |
---|
| 1122 | << size[2] << ")" |
---|
[1347] | 1123 | << G4endl; |
---|
[1142] | 1124 | } |
---|
| 1125 | |
---|
| 1126 | // modality image max. & min. |
---|
| 1127 | kModality.getMinMax(minmax); |
---|
| 1128 | ofile.write((char *)minmax, 4); |
---|
| 1129 | |
---|
| 1130 | // modality image unit |
---|
| 1131 | char munit[13] = "g/cm3 "; |
---|
| 1132 | ofile.write((char *)munit, 12); |
---|
| 1133 | |
---|
| 1134 | // modality image scale |
---|
| 1135 | scale = (float)kModality.getScale(); |
---|
| 1136 | ofile.write((char *)&scale, 4); |
---|
| 1137 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1138 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 1139 | << minmax[0] << ", " |
---|
| 1140 | << minmax[1] << ", " |
---|
[1347] | 1141 | << scale << G4endl; |
---|
[1142] | 1142 | } |
---|
| 1143 | |
---|
| 1144 | // modality image |
---|
| 1145 | int psize = size[0]*size[1]; |
---|
[1347] | 1146 | if(DEBUG || kVerbose > 0) G4cout << "Modality image : "; |
---|
[1142] | 1147 | for(int i = 0; i < size[2]; i++) { |
---|
| 1148 | short * image = kModality.getImage(i); |
---|
| 1149 | ofile.write((char *)image, psize*sizeof(short)); |
---|
| 1150 | |
---|
[1347] | 1151 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << image[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 1152 | } |
---|
[1347] | 1153 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1154 | |
---|
| 1155 | // modality desity map for CT value |
---|
| 1156 | size_t msize = minmax[1] - minmax[0]+1; |
---|
| 1157 | float * pdmap = new float[msize]; |
---|
| 1158 | for(int i = 0; i < (int)msize; i++) pdmap[i] =kModalityImageDensityMap[i]; |
---|
| 1159 | ofile.write((char *)pdmap, msize*sizeof(float)); |
---|
| 1160 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1161 | G4cout << "density map : " << std::ends; |
---|
[1142] | 1162 | for(int i = 0; i < (int)msize; i+=50) |
---|
[1347] | 1163 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 1164 | G4cout << G4endl; |
---|
[1142] | 1165 | } |
---|
| 1166 | delete [] pdmap; |
---|
| 1167 | |
---|
| 1168 | |
---|
| 1169 | //----- dose distribution image -----// |
---|
| 1170 | |
---|
| 1171 | if(!isDoseEmpty()) { |
---|
| 1172 | |
---|
| 1173 | calcDoseDistScale(); |
---|
| 1174 | |
---|
| 1175 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 1176 | // dose distrbution image size |
---|
| 1177 | kDose[ndose].getSize(size); |
---|
| 1178 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1179 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1180 | G4cout << "Dose dist. [" << ndose << "] image size : (" |
---|
[1142] | 1181 | << size[0] << ", " |
---|
| 1182 | << size[1] << ", " |
---|
| 1183 | << size[2] << ")" |
---|
[1347] | 1184 | << G4endl; |
---|
[1142] | 1185 | } |
---|
| 1186 | |
---|
| 1187 | // dose distribution max. & min. |
---|
| 1188 | getShortDoseDistMinMax(minmax, ndose); |
---|
| 1189 | ofile.write((char *)minmax, 2*2); // sizeof(shorft)*2 |
---|
| 1190 | |
---|
| 1191 | // dose distribution unit |
---|
| 1192 | ofile.write((char *)kDoseUnit.c_str(), 12); |
---|
| 1193 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1194 | G4cout << "Dose dist. unit : " << kDoseUnit << G4endl; |
---|
[1142] | 1195 | } |
---|
| 1196 | |
---|
| 1197 | // dose distribution scaling |
---|
| 1198 | double dscale; |
---|
| 1199 | dscale = getDoseDistScale(ndose); |
---|
| 1200 | scale = float(dscale); |
---|
| 1201 | ofile.write((char *)&scale, 4); |
---|
| 1202 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1203 | G4cout << "Dose dist. [" << ndose |
---|
[1142] | 1204 | << "] image min., max., scale : " |
---|
| 1205 | << minmax[0] << ", " |
---|
| 1206 | << minmax[1] << ", " |
---|
[1347] | 1207 | << scale << G4endl; |
---|
[1142] | 1208 | } |
---|
| 1209 | |
---|
| 1210 | // dose distribution image |
---|
| 1211 | int dsize = size[0]*size[1]; |
---|
| 1212 | short * dimage = new short[dsize]; |
---|
| 1213 | for(int z = 0; z < size[2]; z++) { |
---|
| 1214 | getShortDoseDist(dimage, z, ndose); |
---|
| 1215 | ofile.write((char *)dimage, dsize*2); //sizeof(short) |
---|
| 1216 | |
---|
| 1217 | if(DEBUG || kVerbose > 0) { |
---|
| 1218 | for(int j = 0; j < dsize; j++) { |
---|
| 1219 | if(dimage[j] < 0) |
---|
[1347] | 1220 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 1221 | << dimage[j] << ", "; |
---|
| 1222 | } |
---|
| 1223 | } |
---|
| 1224 | } |
---|
[1347] | 1225 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1226 | delete [] dimage; |
---|
| 1227 | |
---|
| 1228 | // relative location of the dose distribution image for |
---|
| 1229 | // the modality image |
---|
| 1230 | getDoseDistCenterPosition(fCenter, ndose); |
---|
| 1231 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 1232 | ofile.write((char *)iCenter, 3*4); // 3*sizeof(int) |
---|
| 1233 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1234 | G4cout << "Dose dist. [" << ndose |
---|
[1142] | 1235 | << "]image relative location : (" |
---|
| 1236 | << iCenter[0] << ", " |
---|
| 1237 | << iCenter[1] << ", " |
---|
[1347] | 1238 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 1239 | } |
---|
| 1240 | } |
---|
| 1241 | } |
---|
| 1242 | |
---|
| 1243 | //----- ROI image -----// |
---|
| 1244 | if(!isROIEmpty()) { |
---|
| 1245 | // ROI image size |
---|
| 1246 | kRoi[0].getSize(size); |
---|
| 1247 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1248 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1249 | G4cout << "ROI image size : (" |
---|
[1142] | 1250 | << size[0] << ", " |
---|
| 1251 | << size[1] << ", " |
---|
| 1252 | << size[2] << ")" |
---|
[1347] | 1253 | << G4endl; |
---|
[1142] | 1254 | } |
---|
| 1255 | |
---|
| 1256 | // ROI max. & min. |
---|
| 1257 | kRoi[0].getMinMax(minmax); |
---|
| 1258 | ofile.write((char *)minmax, sizeof(short)*2); |
---|
| 1259 | |
---|
| 1260 | // ROI distribution scaling |
---|
| 1261 | scale = (float)kRoi[0].getScale(); |
---|
| 1262 | ofile.write((char *)&scale, sizeof(float)); |
---|
| 1263 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1264 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 1265 | << minmax[0] << ", " |
---|
| 1266 | << minmax[1] << ", " |
---|
[1347] | 1267 | << scale << G4endl; |
---|
[1142] | 1268 | } |
---|
| 1269 | |
---|
| 1270 | // ROI image |
---|
| 1271 | int rsize = size[0]*size[1]; |
---|
| 1272 | for(int i = 0; i < size[2]; i++) { |
---|
| 1273 | short * rimage = kRoi[0].getImage(i); |
---|
| 1274 | ofile.write((char *)rimage, rsize*sizeof(short)); |
---|
| 1275 | |
---|
| 1276 | } |
---|
| 1277 | |
---|
| 1278 | // ROI relative location |
---|
| 1279 | kRoi[0].getCenterPosition(fCenter); |
---|
| 1280 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 1281 | ofile.write((char *)iCenter, 3*sizeof(int)); |
---|
| 1282 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1283 | G4cout << "ROI image relative location : (" |
---|
[1142] | 1284 | << iCenter[0] << ", " |
---|
| 1285 | << iCenter[1] << ", " |
---|
[1347] | 1286 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 1287 | } |
---|
| 1288 | } |
---|
| 1289 | |
---|
| 1290 | //----- track information -----// |
---|
| 1291 | // number of track |
---|
| 1292 | int ntrk = kSteps.size(); |
---|
| 1293 | ofile.write((char *)&ntrk, sizeof(int)); |
---|
| 1294 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1295 | G4cout << "# of tracks : " |
---|
| 1296 | << ntrk << G4endl; |
---|
[1142] | 1297 | } |
---|
| 1298 | // track position |
---|
| 1299 | for(int i = 0; i < ntrk; i++) { |
---|
| 1300 | float * tp = kSteps[i]; |
---|
| 1301 | ofile.write((char *)tp, sizeof(float)*6); |
---|
| 1302 | } |
---|
| 1303 | // track color |
---|
| 1304 | int ntcolor = int(kStepColors.size()); |
---|
| 1305 | if(ntrk != ntcolor) |
---|
[1347] | 1306 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 1307 | G4cout << "# of track color information must be the same as # of tracks." |
---|
| 1308 | << G4endl; |
---|
[1142] | 1309 | unsigned char white[3] = {255,255,255}; // default color |
---|
| 1310 | for(int i = 0; i < ntrk; i++) { |
---|
| 1311 | if(i < ntcolor) { |
---|
| 1312 | unsigned char * tcolor = kStepColors[i]; |
---|
| 1313 | ofile.write((char *)tcolor, 3); |
---|
| 1314 | } else { |
---|
| 1315 | ofile.write((char *)white, 3); |
---|
| 1316 | } |
---|
| 1317 | } |
---|
| 1318 | |
---|
| 1319 | // file end mark |
---|
| 1320 | ofile.write("END", 3); |
---|
| 1321 | |
---|
| 1322 | ofile.close(); |
---|
| 1323 | |
---|
| 1324 | return true; |
---|
| 1325 | } |
---|
| 1326 | // |
---|
| 1327 | bool G4GMocrenIO::storeData4(char * _filename) { |
---|
| 1328 | kFileName = _filename; |
---|
| 1329 | return storeData4(); |
---|
| 1330 | } |
---|
| 1331 | |
---|
| 1332 | // version 2 |
---|
| 1333 | bool G4GMocrenIO::storeData2() { |
---|
| 1334 | |
---|
[1347] | 1335 | if(kVerbose > 0) G4cout << ">>>>>>> store data (ver.2) <<<<<<<" << G4endl; |
---|
| 1336 | if(kVerbose > 0) G4cout << " " << kFileName << G4endl; |
---|
[1142] | 1337 | |
---|
| 1338 | bool DEBUG = false;// |
---|
| 1339 | |
---|
| 1340 | // output file open |
---|
| 1341 | std::ofstream ofile(kFileName.c_str(), |
---|
| 1342 | std::ios_base::out|std::ios_base::binary); |
---|
| 1343 | |
---|
| 1344 | // file identifier |
---|
| 1345 | ofile.write("GRAPE ", 8); |
---|
| 1346 | |
---|
| 1347 | // file version |
---|
| 1348 | unsigned char ver = 0x02; |
---|
| 1349 | ofile.write((char *)&ver, 1); |
---|
| 1350 | // file id for old file format support |
---|
| 1351 | ofile.write(kId.c_str(), IDLENGTH); |
---|
| 1352 | // file version for old file format support |
---|
| 1353 | ofile.write(kVersion.c_str(), VERLENGTH); |
---|
| 1354 | // endian |
---|
| 1355 | ofile.write((char *)&kLittleEndianOutput, sizeof(char)); |
---|
| 1356 | |
---|
| 1357 | /* |
---|
| 1358 | // event number |
---|
| 1359 | ofile.write((char *)&numberOfEvents, sizeof(int)); |
---|
| 1360 | float imageSpacing[3]; |
---|
| 1361 | imageSpacing[0] = modalityImageVoxelSpacing[0]; |
---|
| 1362 | imageSpacing[1] = modalityImageVoxelSpacing[1]; |
---|
| 1363 | imageSpacing[2] = modalityImageVoxelSpacing[2]; |
---|
| 1364 | ofile.write((char *)imageSpacing, 12); |
---|
| 1365 | */ |
---|
| 1366 | |
---|
| 1367 | |
---|
| 1368 | // voxel spacings for all images |
---|
| 1369 | ofile.write((char *)kVoxelSpacing, 12); |
---|
| 1370 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1371 | G4cout << "Voxel spacing : (" |
---|
[1142] | 1372 | << kVoxelSpacing[0] << ", " |
---|
| 1373 | << kVoxelSpacing[1] << ", " |
---|
| 1374 | << kVoxelSpacing[2] |
---|
[1347] | 1375 | << ") mm " << G4endl; |
---|
[1142] | 1376 | } |
---|
| 1377 | |
---|
| 1378 | calcPointers2(); |
---|
| 1379 | // offset from file starting point to the modality image data |
---|
| 1380 | ofile.write((char *)&kPointerToModalityData, 4); |
---|
| 1381 | |
---|
| 1382 | // offset from file starting point to the dose image data |
---|
| 1383 | ofile.write((char *)&kPointerToDoseDistData[0], 4); |
---|
| 1384 | |
---|
| 1385 | // offset from file starting point to the ROI image data |
---|
| 1386 | ofile.write((char *)&kPointerToROIData, 4); |
---|
| 1387 | |
---|
| 1388 | // offset from file starting point to the track data |
---|
| 1389 | ofile.write((char *)&kPointerToTrackData, 4); |
---|
| 1390 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1391 | G4cout << "Each pointer to data : " |
---|
[1142] | 1392 | << kPointerToModalityData << ", " |
---|
| 1393 | << kPointerToDoseDistData[0] << ", " |
---|
| 1394 | << kPointerToROIData << ", " |
---|
[1347] | 1395 | << kPointerToTrackData << G4endl; |
---|
[1142] | 1396 | } |
---|
| 1397 | |
---|
| 1398 | //----- modality image -----// |
---|
| 1399 | |
---|
| 1400 | int size[3]; |
---|
| 1401 | float scale; |
---|
| 1402 | short minmax[2]; |
---|
| 1403 | float fCenter[3]; |
---|
| 1404 | int iCenter[3]; |
---|
| 1405 | // modality image size |
---|
| 1406 | kModality.getSize(size); |
---|
| 1407 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1408 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1409 | G4cout << "Modality image size : (" |
---|
[1142] | 1410 | << size[0] << ", " |
---|
| 1411 | << size[1] << ", " |
---|
| 1412 | << size[2] << ")" |
---|
[1347] | 1413 | << G4endl; |
---|
[1142] | 1414 | } |
---|
| 1415 | |
---|
| 1416 | // modality image max. & min. |
---|
| 1417 | kModality.getMinMax(minmax); |
---|
| 1418 | ofile.write((char *)minmax, 4); |
---|
| 1419 | |
---|
| 1420 | // modality image unit |
---|
| 1421 | //char munit[13] = "g/cm3 "; |
---|
| 1422 | //ofile.write((char *)&munit, 12); |
---|
| 1423 | |
---|
| 1424 | // modality image scale |
---|
| 1425 | scale = (float)kModality.getScale(); |
---|
| 1426 | ofile.write((char *)&scale, 4); |
---|
| 1427 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1428 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 1429 | << minmax[0] << ", " |
---|
| 1430 | << minmax[1] << ", " |
---|
[1347] | 1431 | << scale << G4endl; |
---|
[1142] | 1432 | } |
---|
| 1433 | |
---|
| 1434 | // modality image |
---|
| 1435 | int psize = size[0]*size[1]; |
---|
[1347] | 1436 | if(DEBUG || kVerbose > 0) G4cout << "Modality image : "; |
---|
[1142] | 1437 | for(int i = 0; i < size[2]; i++) { |
---|
| 1438 | short * image =kModality.getImage(i); |
---|
| 1439 | ofile.write((char *)image, psize*sizeof(short)); |
---|
| 1440 | |
---|
[1347] | 1441 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << image[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 1442 | } |
---|
[1347] | 1443 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1444 | |
---|
| 1445 | // modality desity map for CT value |
---|
| 1446 | size_t msize = minmax[1] - minmax[0]+1; |
---|
| 1447 | float * pdmap = new float[msize]; |
---|
| 1448 | for(int i = 0; i < (int)msize; i++) pdmap[i] =kModalityImageDensityMap[i]; |
---|
| 1449 | ofile.write((char *)pdmap, msize*sizeof(float)); |
---|
| 1450 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1451 | G4cout << "density map : " << std::ends; |
---|
[1142] | 1452 | for(int i = 0; i < (int)msize; i+=50) |
---|
[1347] | 1453 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 1454 | G4cout << G4endl; |
---|
[1142] | 1455 | } |
---|
| 1456 | delete [] pdmap; |
---|
| 1457 | |
---|
| 1458 | |
---|
| 1459 | //----- dose distribution image -----// |
---|
| 1460 | |
---|
| 1461 | if(!isDoseEmpty()) { |
---|
| 1462 | calcDoseDistScale(); |
---|
| 1463 | |
---|
| 1464 | // dose distrbution image size |
---|
| 1465 | kDose[0].getSize(size); |
---|
| 1466 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1467 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1468 | G4cout << "Dose dist. image size : (" |
---|
[1142] | 1469 | << size[0] << ", " |
---|
| 1470 | << size[1] << ", " |
---|
| 1471 | << size[2] << ")" |
---|
[1347] | 1472 | << G4endl; |
---|
[1142] | 1473 | } |
---|
| 1474 | |
---|
| 1475 | // dose distribution max. & min. |
---|
| 1476 | getShortDoseDistMinMax(minmax); |
---|
| 1477 | ofile.write((char *)minmax, sizeof(short)*2); |
---|
| 1478 | |
---|
| 1479 | // dose distribution scaling |
---|
| 1480 | scale = (float)kDose[0].getScale(); |
---|
| 1481 | ofile.write((char *)&scale, sizeof(float)); |
---|
| 1482 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1483 | G4cout << "Dose dist. image min., max., scale : " |
---|
[1142] | 1484 | << minmax[0] << ", " |
---|
| 1485 | << minmax[1] << ", " |
---|
[1347] | 1486 | << scale << G4endl; |
---|
[1142] | 1487 | } |
---|
| 1488 | |
---|
| 1489 | // dose distribution image |
---|
| 1490 | int dsize = size[0]*size[1]; |
---|
| 1491 | short * dimage = new short[dsize]; |
---|
| 1492 | for(int z = 0; z < size[2]; z++) { |
---|
| 1493 | getShortDoseDist(dimage, z); |
---|
| 1494 | ofile.write((char *)dimage, dsize*sizeof(short)); |
---|
| 1495 | |
---|
| 1496 | if(DEBUG || kVerbose > 0) { |
---|
| 1497 | for(int j = 0; j < dsize; j++) { |
---|
| 1498 | if(dimage[j] < 0) |
---|
[1347] | 1499 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 1500 | << dimage[j] << ", "; |
---|
| 1501 | } |
---|
| 1502 | } |
---|
| 1503 | } |
---|
[1347] | 1504 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1505 | delete [] dimage; |
---|
| 1506 | |
---|
| 1507 | // relative location of the dose distribution image for |
---|
| 1508 | // the modality image |
---|
| 1509 | kDose[0].getCenterPosition(fCenter); |
---|
| 1510 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 1511 | ofile.write((char *)iCenter, 3*sizeof(int)); |
---|
| 1512 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1513 | G4cout << "Dose dist. image relative location : (" |
---|
[1142] | 1514 | << iCenter[0] << ", " |
---|
| 1515 | << iCenter[1] << ", " |
---|
[1347] | 1516 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 1517 | } |
---|
| 1518 | |
---|
| 1519 | } |
---|
| 1520 | |
---|
| 1521 | //----- ROI image -----// |
---|
| 1522 | if(!isROIEmpty()) { |
---|
| 1523 | // ROI image size |
---|
| 1524 | kRoi[0].getSize(size); |
---|
| 1525 | ofile.write((char *)size, 3*sizeof(int)); |
---|
| 1526 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1527 | G4cout << "ROI image size : (" |
---|
[1142] | 1528 | << size[0] << ", " |
---|
| 1529 | << size[1] << ", " |
---|
| 1530 | << size[2] << ")" |
---|
[1347] | 1531 | << G4endl; |
---|
[1142] | 1532 | } |
---|
| 1533 | |
---|
| 1534 | // ROI max. & min. |
---|
| 1535 | kRoi[0].getMinMax(minmax); |
---|
| 1536 | ofile.write((char *)minmax, sizeof(short)*2); |
---|
| 1537 | |
---|
| 1538 | // ROI distribution scaling |
---|
| 1539 | scale = (float)kRoi[0].getScale(); |
---|
| 1540 | ofile.write((char *)&scale, sizeof(float)); |
---|
| 1541 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1542 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 1543 | << minmax[0] << ", " |
---|
| 1544 | << minmax[1] << ", " |
---|
[1347] | 1545 | << scale << G4endl; |
---|
[1142] | 1546 | } |
---|
| 1547 | |
---|
| 1548 | // ROI image |
---|
| 1549 | int rsize = size[0]*size[1]; |
---|
| 1550 | for(int i = 0; i < size[2]; i++) { |
---|
| 1551 | short * rimage = kRoi[0].getImage(i); |
---|
| 1552 | ofile.write((char *)rimage, rsize*sizeof(short)); |
---|
| 1553 | |
---|
| 1554 | } |
---|
| 1555 | |
---|
| 1556 | // ROI relative location |
---|
| 1557 | kRoi[0].getCenterPosition(fCenter); |
---|
| 1558 | for(int i = 0; i < 3; i++) iCenter[i] = (int)fCenter[i]; |
---|
| 1559 | ofile.write((char *)iCenter, 3*sizeof(int)); |
---|
| 1560 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1561 | G4cout << "ROI image relative location : (" |
---|
[1142] | 1562 | << iCenter[0] << ", " |
---|
| 1563 | << iCenter[1] << ", " |
---|
[1347] | 1564 | << iCenter[2] << ")" << G4endl; |
---|
[1142] | 1565 | } |
---|
| 1566 | } |
---|
| 1567 | |
---|
| 1568 | |
---|
| 1569 | //----- track information -----// |
---|
| 1570 | // track |
---|
| 1571 | int ntrk = kSteps.size(); |
---|
| 1572 | ofile.write((char *)&ntrk, sizeof(int)); |
---|
| 1573 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1574 | G4cout << "# of tracks : " |
---|
| 1575 | << ntrk << G4endl; |
---|
[1142] | 1576 | } |
---|
| 1577 | for(int i = 0; i < ntrk; i++) { |
---|
| 1578 | float * tp = kSteps[i]; |
---|
| 1579 | ofile.write((char *)tp, sizeof(float)*6); |
---|
| 1580 | } |
---|
| 1581 | |
---|
| 1582 | |
---|
| 1583 | // file end mark |
---|
| 1584 | ofile.write("END", 3); |
---|
| 1585 | |
---|
| 1586 | ofile.close(); |
---|
| 1587 | |
---|
| 1588 | return true; |
---|
| 1589 | } |
---|
| 1590 | // |
---|
| 1591 | bool G4GMocrenIO::storeData2(char * _filename) { |
---|
| 1592 | kFileName = _filename; |
---|
| 1593 | return storeData(); |
---|
| 1594 | } |
---|
| 1595 | |
---|
| 1596 | bool G4GMocrenIO::retrieveData() { |
---|
| 1597 | |
---|
| 1598 | // input file open |
---|
| 1599 | std::ifstream ifile(kFileName.c_str(), std::ios_base::in|std::ios_base::binary); |
---|
| 1600 | if(!ifile) { |
---|
[1347] | 1601 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 1602 | G4cout << "Cannot open file: " << kFileName |
---|
| 1603 | << " in G4GMocrenIO::retrieveData()." << G4endl; |
---|
[1142] | 1604 | return false; |
---|
| 1605 | } |
---|
| 1606 | |
---|
| 1607 | // file identifier |
---|
| 1608 | char verid[9]; |
---|
| 1609 | ifile.read((char *)verid, 8); |
---|
| 1610 | // file version |
---|
| 1611 | unsigned char ver; |
---|
| 1612 | ifile.read((char *)&ver, 1); |
---|
| 1613 | ifile.close(); |
---|
| 1614 | |
---|
| 1615 | if(std::strncmp(verid, "gMocren", 7) == 0) { |
---|
| 1616 | if(ver == 0x03) { |
---|
[1347] | 1617 | G4cout << ">>>>>>> retrieve data (ver.3) <<<<<<<" << G4endl; |
---|
| 1618 | G4cout << " " << kFileName << G4endl; |
---|
[1142] | 1619 | retrieveData3(); |
---|
| 1620 | } else if (ver == 0x04) { |
---|
[1347] | 1621 | G4cout << ">>>>>>> retrieve data (ver.4) <<<<<<<" << G4endl; |
---|
| 1622 | G4cout << " " << kFileName << G4endl; |
---|
[1142] | 1623 | retrieveData4(); |
---|
| 1624 | } else { |
---|
[1347] | 1625 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) { |
---|
| 1626 | G4cout << "Error -- invalid file version : " << (int)ver |
---|
| 1627 | << G4endl; |
---|
| 1628 | G4cout << " " << kFileName << G4endl; |
---|
| 1629 | } |
---|
[1142] | 1630 | std::exit(-1); |
---|
| 1631 | } |
---|
| 1632 | } else if(std::strncmp(verid, "GRAPE", 5) == 0) { |
---|
[1347] | 1633 | G4cout << ">>>>>>> retrieve data (ver.2) <<<<<<<" << G4endl; |
---|
| 1634 | G4cout << " " << kFileName << G4endl; |
---|
[1142] | 1635 | retrieveData2(); |
---|
| 1636 | } else { |
---|
[1347] | 1637 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 1638 | G4cout << kFileName << " was not gdd file." << G4endl; |
---|
[1142] | 1639 | return false; |
---|
| 1640 | } |
---|
| 1641 | |
---|
| 1642 | return true; |
---|
| 1643 | } |
---|
| 1644 | |
---|
| 1645 | bool G4GMocrenIO::retrieveData(char * _filename) { |
---|
| 1646 | kFileName = _filename; |
---|
| 1647 | return retrieveData(); |
---|
| 1648 | } |
---|
| 1649 | |
---|
| 1650 | // |
---|
| 1651 | bool G4GMocrenIO::retrieveData4() { |
---|
| 1652 | |
---|
| 1653 | bool DEBUG = false;// |
---|
| 1654 | |
---|
| 1655 | // input file open |
---|
| 1656 | std::ifstream ifile(kFileName.c_str(), std::ios_base::in|std::ios_base::binary); |
---|
| 1657 | if(!ifile) { |
---|
[1347] | 1658 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 1659 | G4cout << "Cannot open file: " << kFileName |
---|
| 1660 | << " in G4GMocrenIO::retrieveData3()." << G4endl; |
---|
[1142] | 1661 | return false; |
---|
| 1662 | } |
---|
| 1663 | |
---|
| 1664 | // data buffer |
---|
| 1665 | char ctmp[12]; |
---|
| 1666 | |
---|
| 1667 | // file identifier |
---|
| 1668 | char verid[9]; |
---|
| 1669 | ifile.read((char *)verid, 8); |
---|
| 1670 | |
---|
| 1671 | // file version |
---|
| 1672 | unsigned char ver; |
---|
| 1673 | ifile.read((char *)&ver, 1); |
---|
| 1674 | std::stringstream ss; |
---|
| 1675 | ss << (int)ver; |
---|
| 1676 | kVersion = ss.str(); |
---|
[1347] | 1677 | if(DEBUG || kVerbose > 0) G4cout << "File version : " << kVersion << G4endl; |
---|
[1142] | 1678 | |
---|
| 1679 | // endian |
---|
| 1680 | ifile.read((char *)&kLittleEndianInput, sizeof(char)); |
---|
| 1681 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1682 | G4cout << "Endian : "; |
---|
[1142] | 1683 | if(kLittleEndianInput == 1) |
---|
[1347] | 1684 | G4cout << " little" << G4endl; |
---|
[1142] | 1685 | else { |
---|
[1347] | 1686 | G4cout << " big" << G4endl; |
---|
[1142] | 1687 | } |
---|
| 1688 | } |
---|
| 1689 | |
---|
| 1690 | // comment length (fixed size) |
---|
| 1691 | int clength; |
---|
| 1692 | ifile.read((char *)ctmp, 4); |
---|
| 1693 | convertEndian(ctmp, clength); |
---|
| 1694 | // comment |
---|
| 1695 | char cmt[1025]; |
---|
| 1696 | ifile.read((char *)cmt, clength); |
---|
| 1697 | std::string scmt = cmt; |
---|
| 1698 | scmt += '\0'; |
---|
| 1699 | setComment(scmt); |
---|
| 1700 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1701 | G4cout << "Data comment : " |
---|
| 1702 | << kComment << G4endl; |
---|
[1142] | 1703 | } |
---|
| 1704 | |
---|
| 1705 | // voxel spacings for all images |
---|
| 1706 | ifile.read((char *)ctmp, 12); |
---|
| 1707 | convertEndian(ctmp, kVoxelSpacing[0]); |
---|
| 1708 | convertEndian(ctmp+4, kVoxelSpacing[1]); |
---|
| 1709 | convertEndian(ctmp+8, kVoxelSpacing[2]); |
---|
| 1710 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1711 | G4cout << "Voxel spacing : (" |
---|
[1142] | 1712 | << kVoxelSpacing[0] << ", " |
---|
| 1713 | << kVoxelSpacing[1] << ", " |
---|
| 1714 | << kVoxelSpacing[2] |
---|
[1347] | 1715 | << ") mm " << G4endl; |
---|
[1142] | 1716 | } |
---|
| 1717 | |
---|
| 1718 | |
---|
| 1719 | // offset from file starting point to the modality image data |
---|
| 1720 | ifile.read((char *)ctmp, 4); |
---|
| 1721 | convertEndian(ctmp, kPointerToModalityData); |
---|
| 1722 | |
---|
| 1723 | // # of dose distributions |
---|
| 1724 | ifile.read((char *)ctmp, 4); |
---|
| 1725 | int nDoseDist; |
---|
| 1726 | convertEndian(ctmp, nDoseDist); |
---|
| 1727 | |
---|
| 1728 | // offset from file starting point to the dose image data |
---|
| 1729 | for(int i = 0; i < nDoseDist; i++) { |
---|
| 1730 | ifile.read((char *)ctmp, 4); |
---|
| 1731 | unsigned int dptr; |
---|
| 1732 | convertEndian(ctmp, dptr); |
---|
| 1733 | addPointerToDoseDistData(dptr); |
---|
| 1734 | } |
---|
| 1735 | |
---|
| 1736 | // offset from file starting point to the ROI image data |
---|
| 1737 | ifile.read((char *)ctmp, 4); |
---|
| 1738 | convertEndian(ctmp, kPointerToROIData); |
---|
| 1739 | |
---|
| 1740 | // offset from file starting point to the track data |
---|
| 1741 | ifile.read((char *)ctmp, 4); |
---|
| 1742 | convertEndian(ctmp, kPointerToTrackData); |
---|
| 1743 | |
---|
| 1744 | // offset from file starting point to the detector data |
---|
| 1745 | ifile.read((char *)ctmp, 4); |
---|
| 1746 | convertEndian(ctmp, kPointerToDetectorData); |
---|
| 1747 | |
---|
| 1748 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1749 | G4cout << "Each pointer to data : " |
---|
[1142] | 1750 | << kPointerToModalityData << ", "; |
---|
| 1751 | for(int i = 0; i < nDoseDist; i++) |
---|
[1347] | 1752 | G4cout << kPointerToDoseDistData[i] << ", "; |
---|
| 1753 | G4cout << kPointerToROIData << ", " |
---|
[1142] | 1754 | << kPointerToTrackData << ", " |
---|
| 1755 | << kPointerToDetectorData |
---|
[1347] | 1756 | << G4endl; |
---|
[1142] | 1757 | } |
---|
| 1758 | |
---|
| 1759 | |
---|
| 1760 | |
---|
| 1761 | if(kPointerToModalityData == 0 && kPointerToDoseDistData.size() == 0 && |
---|
| 1762 | kPointerToROIData == 0 && kPointerToTrackData == 0) { |
---|
| 1763 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1764 | G4cout << "No data." << G4endl; |
---|
[1142] | 1765 | } |
---|
| 1766 | return false; |
---|
| 1767 | } |
---|
| 1768 | |
---|
| 1769 | // event number |
---|
| 1770 | /* ver 1 |
---|
| 1771 | ifile.read(ctmp, sizeof(int)); |
---|
| 1772 | convertEndian(ctmp, numberOfEvents); |
---|
| 1773 | */ |
---|
| 1774 | |
---|
| 1775 | int size[3]; |
---|
| 1776 | float scale; |
---|
| 1777 | double dscale; |
---|
| 1778 | short minmax[2]; |
---|
| 1779 | float fCenter[3]; |
---|
| 1780 | int iCenter[3]; |
---|
| 1781 | |
---|
| 1782 | //----- Modality image -----// |
---|
| 1783 | // modality image size |
---|
| 1784 | ifile.read(ctmp, 3*sizeof(int)); |
---|
| 1785 | convertEndian(ctmp, size[0]); |
---|
| 1786 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 1787 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 1788 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1789 | G4cout << "Modality image size : (" |
---|
[1142] | 1790 | << size[0] << ", " |
---|
| 1791 | << size[1] << ", " |
---|
| 1792 | << size[2] << ")" |
---|
[1347] | 1793 | << G4endl; |
---|
[1142] | 1794 | } |
---|
| 1795 | kModality.setSize(size); |
---|
| 1796 | |
---|
| 1797 | // modality image voxel spacing |
---|
| 1798 | /* |
---|
| 1799 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 1800 | convertEndian(ctmp, modalityImageVoxelSpacing[0]); |
---|
| 1801 | convertEndian(ctmp+sizeof(float), modalityImageVoxelSpacing[1]); |
---|
| 1802 | convertEndian(ctmp+2*sizeof(float), modalityImageVoxelSpacing[2]); |
---|
| 1803 | */ |
---|
| 1804 | |
---|
| 1805 | if(kPointerToModalityData != 0) { |
---|
| 1806 | |
---|
| 1807 | // modality density max. & min. |
---|
| 1808 | ifile.read((char *)ctmp, 4); |
---|
| 1809 | convertEndian(ctmp, minmax[0]); |
---|
| 1810 | convertEndian(ctmp+2, minmax[1]); |
---|
| 1811 | kModality.setMinMax(minmax); |
---|
| 1812 | |
---|
| 1813 | // modality image unit |
---|
| 1814 | char munit[13]; |
---|
| 1815 | munit[12] = '\0'; |
---|
| 1816 | ifile.read((char *)munit, 12); |
---|
| 1817 | std::string smunit = munit; |
---|
| 1818 | setModalityImageUnit(smunit); |
---|
| 1819 | |
---|
| 1820 | // modality density scale |
---|
| 1821 | ifile.read((char *)ctmp, 4); |
---|
| 1822 | convertEndian(ctmp, scale); |
---|
| 1823 | kModality.setScale(dscale = scale); |
---|
| 1824 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1825 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 1826 | << minmax[0] << ", " |
---|
| 1827 | << minmax[1] << ", " |
---|
[1347] | 1828 | << scale << G4endl; |
---|
[1142] | 1829 | } |
---|
| 1830 | |
---|
| 1831 | // modality density |
---|
| 1832 | int psize = size[0]*size[1]; |
---|
[1347] | 1833 | if(DEBUG || kVerbose > 0) G4cout << "Modality image (" << psize << "): "; |
---|
[1142] | 1834 | char * cimage = new char[psize*sizeof(short)]; |
---|
| 1835 | for(int i = 0; i < size[2]; i++) { |
---|
| 1836 | ifile.read((char *)cimage, psize*sizeof(short)); |
---|
| 1837 | short * mimage = new short[psize]; |
---|
| 1838 | for(int j = 0; j < psize; j++) { |
---|
| 1839 | convertEndian(cimage+j*sizeof(short), mimage[j]); |
---|
| 1840 | } |
---|
| 1841 | kModality.addImage(mimage); |
---|
| 1842 | |
---|
[1347] | 1843 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << mimage[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 1844 | } |
---|
[1347] | 1845 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1846 | delete [] cimage; |
---|
| 1847 | |
---|
| 1848 | // modality desity map for CT value |
---|
| 1849 | size_t msize = minmax[1]-minmax[0]+1; |
---|
[1347] | 1850 | if(DEBUG || kVerbose > 0) G4cout << "msize: " << msize << G4endl; |
---|
[1142] | 1851 | char * pdmap = new char[msize*sizeof(float)]; |
---|
| 1852 | ifile.read((char *)pdmap, msize*sizeof(float)); |
---|
| 1853 | float ftmp; |
---|
| 1854 | for(int i = 0; i < (int)msize; i++) { |
---|
| 1855 | convertEndian(pdmap+i*sizeof(float), ftmp); |
---|
| 1856 | kModalityImageDensityMap.push_back(ftmp); |
---|
| 1857 | } |
---|
| 1858 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1859 | G4cout << "density map : " << std::ends; |
---|
[1142] | 1860 | for(int i = 0; i < 10; i++) |
---|
[1347] | 1861 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 1862 | G4cout << G4endl; |
---|
| 1863 | for(int i = 0; i < 10; i++) G4cout << ".."; |
---|
| 1864 | G4cout << G4endl; |
---|
[1142] | 1865 | for(size_t i =kModalityImageDensityMap.size() - 10; i <kModalityImageDensityMap.size(); i++) |
---|
[1347] | 1866 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 1867 | G4cout << G4endl; |
---|
[1142] | 1868 | } |
---|
| 1869 | |
---|
| 1870 | } |
---|
| 1871 | |
---|
| 1872 | |
---|
| 1873 | //----- dose distribution image -----// |
---|
| 1874 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 1875 | |
---|
| 1876 | newDoseDist(); |
---|
| 1877 | |
---|
| 1878 | // dose distrbution image size |
---|
| 1879 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 1880 | convertEndian(ctmp, size[0]); |
---|
| 1881 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 1882 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 1883 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1884 | G4cout << "Dose dist. image size : (" |
---|
[1142] | 1885 | << size[0] << ", " |
---|
| 1886 | << size[1] << ", " |
---|
| 1887 | << size[2] << ")" |
---|
[1347] | 1888 | << G4endl; |
---|
[1142] | 1889 | } |
---|
| 1890 | kDose[ndose].setSize(size); |
---|
| 1891 | |
---|
| 1892 | // dose distribution max. & min. |
---|
| 1893 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 1894 | convertEndian(ctmp, minmax[0]); |
---|
| 1895 | convertEndian(ctmp+2, minmax[1]); |
---|
| 1896 | |
---|
| 1897 | // dose distribution unit |
---|
| 1898 | char dunit[13]; |
---|
| 1899 | dunit[12] = '\0'; |
---|
| 1900 | ifile.read((char *)dunit, 12); |
---|
| 1901 | std::string sdunit = dunit; |
---|
| 1902 | setDoseDistUnit(sdunit, ndose); |
---|
| 1903 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1904 | G4cout << "Dose dist. unit : " << kDoseUnit << G4endl; |
---|
[1142] | 1905 | } |
---|
| 1906 | |
---|
| 1907 | // dose distribution scaling |
---|
| 1908 | ifile.read((char *)ctmp, 4); // sizeof(float) |
---|
| 1909 | convertEndian(ctmp, scale); |
---|
| 1910 | kDose[ndose].setScale(dscale = scale); |
---|
| 1911 | |
---|
| 1912 | double dminmax[2]; |
---|
| 1913 | for(int i = 0; i < 2; i++) dminmax[i] = minmax[i]*dscale; |
---|
| 1914 | kDose[ndose].setMinMax(dminmax); |
---|
| 1915 | |
---|
| 1916 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1917 | G4cout << "Dose dist. image min., max., scale : " |
---|
[1142] | 1918 | << dminmax[0] << ", " |
---|
| 1919 | << dminmax[1] << ", " |
---|
[1347] | 1920 | << scale << G4endl; |
---|
[1142] | 1921 | } |
---|
| 1922 | |
---|
| 1923 | // dose distribution image |
---|
| 1924 | int dsize = size[0]*size[1]; |
---|
[1347] | 1925 | if(DEBUG || kVerbose > 0) G4cout << "Dose dist. (" << dsize << "): "; |
---|
[1142] | 1926 | char * di = new char[dsize*sizeof(short)]; |
---|
| 1927 | short * shimage = new short[dsize]; |
---|
| 1928 | for(int z = 0; z < size[2]; z++) { |
---|
| 1929 | ifile.read((char *)di, dsize*sizeof(short)); |
---|
| 1930 | double * dimage = new double[dsize]; |
---|
| 1931 | for(int xy = 0; xy < dsize; xy++) { |
---|
| 1932 | convertEndian(di+xy*sizeof(short), shimage[xy]); |
---|
| 1933 | dimage[xy] = shimage[xy]*dscale; |
---|
| 1934 | } |
---|
| 1935 | kDose[ndose].addImage(dimage); |
---|
| 1936 | |
---|
[1347] | 1937 | if(DEBUG || kVerbose > 0) G4cout << "[" << z << "]" << dimage[(size_t)(dsize*0.55)] << ", "; |
---|
[1142] | 1938 | |
---|
| 1939 | if(DEBUG || kVerbose > 0) { |
---|
| 1940 | for(int j = 0; j < dsize; j++) { |
---|
| 1941 | if(dimage[j] < 0) |
---|
[1347] | 1942 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 1943 | << dimage[j] << ", "; |
---|
| 1944 | } |
---|
| 1945 | } |
---|
| 1946 | } |
---|
| 1947 | delete [] shimage; |
---|
| 1948 | delete [] di; |
---|
[1347] | 1949 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 1950 | |
---|
| 1951 | ifile.read((char *)ctmp, 3*4); // 3*sizeof(int) |
---|
| 1952 | convertEndian(ctmp, iCenter[0]); |
---|
| 1953 | convertEndian(ctmp+4, iCenter[1]); |
---|
| 1954 | convertEndian(ctmp+8, iCenter[2]); |
---|
| 1955 | for(int i = 0; i < 3; i++) fCenter[i] = (float)iCenter[i]; |
---|
| 1956 | kDose[ndose].setCenterPosition(fCenter); |
---|
| 1957 | |
---|
| 1958 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1959 | G4cout << "Dose dist. image relative location : (" |
---|
[1142] | 1960 | << fCenter[0] << ", " |
---|
| 1961 | << fCenter[1] << ", " |
---|
[1347] | 1962 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 1963 | } |
---|
| 1964 | |
---|
| 1965 | |
---|
| 1966 | // dose distribution name |
---|
| 1967 | char cname[81]; |
---|
| 1968 | ifile.read((char *)cname, 80); |
---|
| 1969 | std::string dosename = cname; |
---|
| 1970 | setDoseDistName(dosename, ndose); |
---|
| 1971 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1972 | G4cout << "Dose dist. name : " << dosename << G4endl; |
---|
[1142] | 1973 | } |
---|
| 1974 | |
---|
| 1975 | } |
---|
| 1976 | |
---|
| 1977 | //----- ROI image -----// |
---|
| 1978 | if(kPointerToROIData != 0) { |
---|
| 1979 | |
---|
| 1980 | newROI(); |
---|
| 1981 | |
---|
| 1982 | // ROI image size |
---|
| 1983 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 1984 | convertEndian(ctmp, size[0]); |
---|
| 1985 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 1986 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 1987 | kRoi[0].setSize(size); |
---|
| 1988 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 1989 | G4cout << "ROI image size : (" |
---|
[1142] | 1990 | << size[0] << ", " |
---|
| 1991 | << size[1] << ", " |
---|
| 1992 | << size[2] << ")" |
---|
[1347] | 1993 | << G4endl; |
---|
[1142] | 1994 | } |
---|
| 1995 | |
---|
| 1996 | // ROI max. & min. |
---|
| 1997 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 1998 | convertEndian(ctmp, minmax[0]); |
---|
| 1999 | convertEndian(ctmp+sizeof(short), minmax[1]); |
---|
| 2000 | kRoi[0].setMinMax(minmax); |
---|
| 2001 | |
---|
| 2002 | // ROI distribution scaling |
---|
| 2003 | ifile.read((char *)ctmp, sizeof(float)); |
---|
| 2004 | convertEndian(ctmp, scale); |
---|
| 2005 | kRoi[0].setScale(dscale = scale); |
---|
| 2006 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2007 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 2008 | << minmax[0] << ", " |
---|
| 2009 | << minmax[1] << ", " |
---|
[1347] | 2010 | << scale << G4endl; |
---|
[1142] | 2011 | } |
---|
| 2012 | |
---|
| 2013 | // ROI image |
---|
| 2014 | int rsize = size[0]*size[1]; |
---|
| 2015 | char * ri = new char[rsize*sizeof(short)]; |
---|
| 2016 | for(int i = 0; i < size[2]; i++) { |
---|
| 2017 | ifile.read((char *)ri, rsize*sizeof(short)); |
---|
| 2018 | short * rimage = new short[rsize]; |
---|
| 2019 | for(int j = 0; j < rsize; j++) { |
---|
| 2020 | convertEndian(ri+j*sizeof(short), rimage[j]); |
---|
| 2021 | } |
---|
| 2022 | kRoi[0].addImage(rimage); |
---|
| 2023 | |
---|
| 2024 | } |
---|
| 2025 | delete [] ri; |
---|
| 2026 | |
---|
| 2027 | // ROI relative location |
---|
| 2028 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2029 | convertEndian(ctmp, iCenter[0]); |
---|
| 2030 | convertEndian(ctmp+sizeof(int), iCenter[1]); |
---|
| 2031 | convertEndian(ctmp+2*sizeof(int), iCenter[2]); |
---|
| 2032 | for(int i = 0; i < 3; i++) fCenter[i] = iCenter[i]; |
---|
| 2033 | kRoi[0].setCenterPosition(fCenter); |
---|
| 2034 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2035 | G4cout << "ROI image relative location : (" |
---|
[1142] | 2036 | << fCenter[0] << ", " |
---|
| 2037 | << fCenter[1] << ", " |
---|
[1347] | 2038 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 2039 | } |
---|
| 2040 | |
---|
| 2041 | } |
---|
| 2042 | |
---|
| 2043 | //----- track information -----// |
---|
| 2044 | if(kPointerToTrackData != 0) { |
---|
| 2045 | |
---|
| 2046 | // track |
---|
| 2047 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2048 | int ntrk; |
---|
| 2049 | convertEndian(ctmp, ntrk); |
---|
| 2050 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2051 | G4cout << "# of tracks: " << ntrk << G4endl; |
---|
[1142] | 2052 | } |
---|
| 2053 | |
---|
| 2054 | // track position |
---|
| 2055 | unsigned char rgb[3]; |
---|
| 2056 | for(int i = 0; i < ntrk; i++) { |
---|
| 2057 | |
---|
| 2058 | |
---|
| 2059 | // # of steps in a track |
---|
| 2060 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2061 | int nsteps; |
---|
| 2062 | convertEndian(ctmp, nsteps); |
---|
| 2063 | |
---|
| 2064 | // track color |
---|
| 2065 | ifile.read((char *)rgb, 3); |
---|
| 2066 | |
---|
| 2067 | std::vector<float *> steps; |
---|
| 2068 | // steps |
---|
| 2069 | for(int j = 0; j < nsteps; j++) { |
---|
| 2070 | |
---|
| 2071 | float * steppoint = new float[6]; |
---|
| 2072 | ifile.read((char *)ctmp, sizeof(float)*6); |
---|
| 2073 | |
---|
| 2074 | for(int k = 0; k < 6; k++) { |
---|
| 2075 | convertEndian(ctmp+k*sizeof(float), steppoint[k]); |
---|
| 2076 | } |
---|
| 2077 | |
---|
| 2078 | steps.push_back(steppoint); |
---|
| 2079 | } |
---|
| 2080 | |
---|
| 2081 | // add a track to the track container |
---|
| 2082 | addTrack(steps, rgb); |
---|
| 2083 | |
---|
| 2084 | if(DEBUG || kVerbose > 0) { |
---|
| 2085 | if(i < 5) { |
---|
[1347] | 2086 | G4cout << i << ": " ; |
---|
| 2087 | for(int j = 0; j < 3; j++) G4cout << steps[0][j] << " "; |
---|
[1142] | 2088 | int nstp = steps.size(); |
---|
[1347] | 2089 | G4cout << "<-> "; |
---|
| 2090 | for(int j = 3; j < 6; j++) G4cout << steps[nstp-1][j] << " "; |
---|
| 2091 | G4cout << " rgb( "; |
---|
| 2092 | for(int j = 0; j < 3; j++) G4cout << (int)rgb[j] << " "; |
---|
| 2093 | G4cout << ")" << G4endl; |
---|
[1142] | 2094 | } |
---|
| 2095 | } |
---|
| 2096 | } |
---|
| 2097 | |
---|
| 2098 | |
---|
| 2099 | } |
---|
| 2100 | |
---|
| 2101 | |
---|
| 2102 | //----- detector information -----// |
---|
| 2103 | if(kPointerToDetectorData != 0) { |
---|
| 2104 | |
---|
| 2105 | // number of detectors |
---|
| 2106 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2107 | int ndet; |
---|
| 2108 | convertEndian(ctmp, ndet); |
---|
| 2109 | |
---|
| 2110 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2111 | G4cout << "# of detectors : " |
---|
| 2112 | << ndet << G4endl; |
---|
[1142] | 2113 | } |
---|
| 2114 | |
---|
| 2115 | for(int nd = 0; nd < ndet; nd++) { |
---|
| 2116 | |
---|
| 2117 | // # of edges of a detector |
---|
| 2118 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2119 | int nedges; |
---|
| 2120 | convertEndian(ctmp, nedges); |
---|
| 2121 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2122 | G4cout << "# of edges in a detector : " << nedges << G4endl; |
---|
[1142] | 2123 | } |
---|
| 2124 | |
---|
| 2125 | // edges |
---|
| 2126 | std::vector<float *> detector; |
---|
| 2127 | char cftmp[24]; |
---|
| 2128 | for(int ne = 0; ne < nedges; ne++) { |
---|
| 2129 | |
---|
| 2130 | ifile.read((char *)cftmp, sizeof(float)*6); |
---|
| 2131 | float * edgePoints = new float[6]; |
---|
| 2132 | for(int j = 0; j < 6; j++) convertEndian(&cftmp[sizeof(float)*j], edgePoints[j]); |
---|
| 2133 | detector.push_back(edgePoints); |
---|
| 2134 | |
---|
| 2135 | } |
---|
| 2136 | |
---|
| 2137 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2138 | G4cout << " first edge : (" << detector[0][0] << ", " |
---|
[1142] | 2139 | << detector[0][1] << ", " |
---|
| 2140 | << detector[0][2] << ") - (" |
---|
| 2141 | << detector[0][3] << ", " |
---|
| 2142 | << detector[0][4] << ", " |
---|
[1347] | 2143 | << detector[0][5] << ")" << G4endl; |
---|
[1142] | 2144 | } |
---|
| 2145 | |
---|
| 2146 | // detector color |
---|
| 2147 | unsigned char dcolor[3]; |
---|
| 2148 | ifile.read((char *)dcolor, 3); |
---|
| 2149 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2150 | G4cout << " detector color : rgb(" |
---|
[1142] | 2151 | << (int)dcolor[0] << ", " |
---|
| 2152 | << (int)dcolor[1] << ", " |
---|
[1347] | 2153 | << (int)dcolor[2] << G4endl; |
---|
[1142] | 2154 | } |
---|
| 2155 | |
---|
| 2156 | |
---|
| 2157 | // detector name |
---|
| 2158 | char cname[80]; |
---|
| 2159 | ifile.read((char *)cname, 80); |
---|
| 2160 | std::string dname = cname; |
---|
| 2161 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2162 | G4cout << " detector name : " << dname << G4endl; |
---|
[1142] | 2163 | } |
---|
| 2164 | |
---|
| 2165 | |
---|
| 2166 | addDetector(dname, detector, dcolor); |
---|
| 2167 | |
---|
| 2168 | } |
---|
| 2169 | } |
---|
| 2170 | |
---|
| 2171 | |
---|
| 2172 | ifile.close(); |
---|
| 2173 | |
---|
| 2174 | return true; |
---|
| 2175 | } |
---|
| 2176 | bool G4GMocrenIO::retrieveData4(char * _filename) { |
---|
| 2177 | kFileName = _filename; |
---|
| 2178 | return retrieveData(); |
---|
| 2179 | } |
---|
| 2180 | |
---|
| 2181 | // |
---|
| 2182 | bool G4GMocrenIO::retrieveData3() { |
---|
| 2183 | |
---|
| 2184 | bool DEBUG = false;// |
---|
| 2185 | |
---|
| 2186 | // input file open |
---|
| 2187 | std::ifstream ifile(kFileName.c_str(), std::ios_base::in|std::ios_base::binary); |
---|
| 2188 | if(!ifile) { |
---|
[1347] | 2189 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 2190 | G4cout << "Cannot open file: " << kFileName |
---|
| 2191 | << " in G4GMocrenIO::retrieveData3()." << G4endl; |
---|
[1142] | 2192 | return false; |
---|
| 2193 | } |
---|
| 2194 | |
---|
| 2195 | // data buffer |
---|
| 2196 | char ctmp[12]; |
---|
| 2197 | |
---|
| 2198 | // file identifier |
---|
| 2199 | char verid[9]; |
---|
| 2200 | ifile.read((char *)verid, 8); |
---|
| 2201 | |
---|
| 2202 | // file version |
---|
| 2203 | unsigned char ver; |
---|
| 2204 | ifile.read((char *)&ver, 1); |
---|
| 2205 | std::stringstream ss; |
---|
| 2206 | ss << (int)ver; |
---|
| 2207 | kVersion = ss.str(); |
---|
[1347] | 2208 | if(DEBUG || kVerbose > 0) G4cout << "File version : " << kVersion << G4endl; |
---|
[1142] | 2209 | |
---|
| 2210 | // endian |
---|
| 2211 | ifile.read((char *)&kLittleEndianInput, sizeof(char)); |
---|
| 2212 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2213 | G4cout << "Endian : "; |
---|
[1142] | 2214 | if(kLittleEndianInput == 1) |
---|
[1347] | 2215 | G4cout << " little" << G4endl; |
---|
[1142] | 2216 | else { |
---|
[1347] | 2217 | G4cout << " big" << G4endl; |
---|
[1142] | 2218 | } |
---|
| 2219 | } |
---|
| 2220 | |
---|
| 2221 | // comment length (fixed size) |
---|
| 2222 | int clength; |
---|
| 2223 | ifile.read((char *)ctmp, 4); |
---|
| 2224 | convertEndian(ctmp, clength); |
---|
| 2225 | // comment |
---|
| 2226 | char cmt[1025]; |
---|
| 2227 | ifile.read((char *)cmt, clength); |
---|
| 2228 | std::string scmt = cmt; |
---|
| 2229 | setComment(scmt); |
---|
| 2230 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2231 | G4cout << "Data comment : " |
---|
| 2232 | << kComment << G4endl; |
---|
[1142] | 2233 | } |
---|
| 2234 | |
---|
| 2235 | // voxel spacings for all images |
---|
| 2236 | ifile.read((char *)ctmp, 12); |
---|
| 2237 | convertEndian(ctmp, kVoxelSpacing[0]); |
---|
| 2238 | convertEndian(ctmp+4, kVoxelSpacing[1]); |
---|
| 2239 | convertEndian(ctmp+8, kVoxelSpacing[2]); |
---|
| 2240 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2241 | G4cout << "Voxel spacing : (" |
---|
[1142] | 2242 | << kVoxelSpacing[0] << ", " |
---|
| 2243 | << kVoxelSpacing[1] << ", " |
---|
| 2244 | << kVoxelSpacing[2] |
---|
[1347] | 2245 | << ") mm " << G4endl; |
---|
[1142] | 2246 | } |
---|
| 2247 | |
---|
| 2248 | |
---|
| 2249 | // offset from file starting point to the modality image data |
---|
| 2250 | ifile.read((char *)ctmp, 4); |
---|
| 2251 | convertEndian(ctmp, kPointerToModalityData); |
---|
| 2252 | |
---|
| 2253 | // # of dose distributions |
---|
| 2254 | ifile.read((char *)ctmp, 4); |
---|
| 2255 | int nDoseDist; |
---|
| 2256 | convertEndian(ctmp, nDoseDist); |
---|
| 2257 | |
---|
| 2258 | // offset from file starting point to the dose image data |
---|
| 2259 | for(int i = 0; i < nDoseDist; i++) { |
---|
| 2260 | ifile.read((char *)ctmp, 4); |
---|
| 2261 | unsigned int dptr; |
---|
| 2262 | convertEndian(ctmp, dptr); |
---|
| 2263 | addPointerToDoseDistData(dptr); |
---|
| 2264 | } |
---|
| 2265 | |
---|
| 2266 | // offset from file starting point to the ROI image data |
---|
| 2267 | ifile.read((char *)ctmp, 4); |
---|
| 2268 | convertEndian(ctmp, kPointerToROIData); |
---|
| 2269 | |
---|
| 2270 | // offset from file starting point to the track data |
---|
| 2271 | ifile.read((char *)ctmp, 4); |
---|
| 2272 | convertEndian(ctmp, kPointerToTrackData); |
---|
| 2273 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2274 | G4cout << "Each pointer to data : " |
---|
[1142] | 2275 | << kPointerToModalityData << ", "; |
---|
| 2276 | for(int i = 0; i < nDoseDist; i++) |
---|
[1347] | 2277 | G4cout << kPointerToDoseDistData[0] << ", "; |
---|
| 2278 | G4cout << kPointerToROIData << ", " |
---|
| 2279 | << kPointerToTrackData << G4endl; |
---|
[1142] | 2280 | } |
---|
| 2281 | |
---|
| 2282 | if(kPointerToModalityData == 0 && kPointerToDoseDistData.size() == 0 && |
---|
| 2283 | kPointerToROIData == 0 && kPointerToTrackData == 0) { |
---|
| 2284 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2285 | G4cout << "No data." << G4endl; |
---|
[1142] | 2286 | } |
---|
| 2287 | return false; |
---|
| 2288 | } |
---|
| 2289 | |
---|
| 2290 | // event number |
---|
| 2291 | /* ver 1 |
---|
| 2292 | ifile.read(ctmp, sizeof(int)); |
---|
| 2293 | convertEndian(ctmp, numberOfEvents); |
---|
| 2294 | */ |
---|
| 2295 | |
---|
| 2296 | int size[3]; |
---|
| 2297 | float scale; |
---|
| 2298 | double dscale; |
---|
| 2299 | short minmax[2]; |
---|
| 2300 | float fCenter[3]; |
---|
| 2301 | int iCenter[3]; |
---|
| 2302 | |
---|
| 2303 | //----- Modality image -----// |
---|
| 2304 | // modality image size |
---|
| 2305 | ifile.read(ctmp, 3*sizeof(int)); |
---|
| 2306 | convertEndian(ctmp, size[0]); |
---|
| 2307 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2308 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2309 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2310 | G4cout << "Modality image size : (" |
---|
[1142] | 2311 | << size[0] << ", " |
---|
| 2312 | << size[1] << ", " |
---|
| 2313 | << size[2] << ")" |
---|
[1347] | 2314 | << G4endl; |
---|
[1142] | 2315 | } |
---|
| 2316 | kModality.setSize(size); |
---|
| 2317 | |
---|
| 2318 | // modality image voxel spacing |
---|
| 2319 | /* |
---|
| 2320 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 2321 | convertEndian(ctmp, modalityImageVoxelSpacing[0]); |
---|
| 2322 | convertEndian(ctmp+sizeof(float), modalityImageVoxelSpacing[1]); |
---|
| 2323 | convertEndian(ctmp+2*sizeof(float), modalityImageVoxelSpacing[2]); |
---|
| 2324 | */ |
---|
| 2325 | |
---|
| 2326 | if(kPointerToModalityData != 0) { |
---|
| 2327 | |
---|
| 2328 | // modality density max. & min. |
---|
| 2329 | ifile.read((char *)ctmp, 4); |
---|
| 2330 | convertEndian(ctmp, minmax[0]); |
---|
| 2331 | convertEndian(ctmp+2, minmax[1]); |
---|
| 2332 | kModality.setMinMax(minmax); |
---|
| 2333 | |
---|
| 2334 | // modality image unit |
---|
| 2335 | char munit[13]; |
---|
| 2336 | ifile.read((char *)munit, 12); |
---|
| 2337 | std::string smunit = munit; |
---|
| 2338 | setModalityImageUnit(smunit); |
---|
| 2339 | |
---|
| 2340 | // modality density scale |
---|
| 2341 | ifile.read((char *)ctmp, 4); |
---|
| 2342 | convertEndian(ctmp, scale); |
---|
| 2343 | kModality.setScale(dscale = scale); |
---|
| 2344 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2345 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 2346 | << minmax[0] << ", " |
---|
| 2347 | << minmax[1] << ", " |
---|
[1347] | 2348 | << scale << G4endl; |
---|
[1142] | 2349 | } |
---|
| 2350 | |
---|
| 2351 | // modality density |
---|
| 2352 | int psize = size[0]*size[1]; |
---|
[1347] | 2353 | if(DEBUG || kVerbose > 0) G4cout << "Modality image (" << psize << "): "; |
---|
[1142] | 2354 | char * cimage = new char[psize*sizeof(short)]; |
---|
| 2355 | for(int i = 0; i < size[2]; i++) { |
---|
| 2356 | ifile.read((char *)cimage, psize*sizeof(short)); |
---|
| 2357 | short * mimage = new short[psize]; |
---|
| 2358 | for(int j = 0; j < psize; j++) { |
---|
| 2359 | convertEndian(cimage+j*sizeof(short), mimage[j]); |
---|
| 2360 | } |
---|
| 2361 | kModality.addImage(mimage); |
---|
| 2362 | |
---|
[1347] | 2363 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << mimage[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 2364 | } |
---|
[1347] | 2365 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 2366 | delete [] cimage; |
---|
| 2367 | |
---|
| 2368 | // modality desity map for CT value |
---|
| 2369 | size_t msize = minmax[1]-minmax[0]+1; |
---|
[1347] | 2370 | if(DEBUG || kVerbose > 0) G4cout << "msize: " << msize << G4endl; |
---|
[1142] | 2371 | char * pdmap = new char[msize*sizeof(float)]; |
---|
| 2372 | ifile.read((char *)pdmap, msize*sizeof(float)); |
---|
| 2373 | float ftmp; |
---|
| 2374 | for(int i = 0; i < (int)msize; i++) { |
---|
| 2375 | convertEndian(pdmap+i*sizeof(float), ftmp); |
---|
| 2376 | kModalityImageDensityMap.push_back(ftmp); |
---|
| 2377 | } |
---|
| 2378 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2379 | G4cout << "density map : " << std::ends; |
---|
[1142] | 2380 | for(int i = 0; i < 10; i++) |
---|
[1347] | 2381 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 2382 | G4cout << G4endl; |
---|
| 2383 | for(int i = 0; i < 10; i++) G4cout << ".."; |
---|
| 2384 | G4cout << G4endl; |
---|
[1142] | 2385 | for(size_t i =kModalityImageDensityMap.size() - 10; i <kModalityImageDensityMap.size(); i++) |
---|
[1347] | 2386 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 2387 | G4cout << G4endl; |
---|
[1142] | 2388 | } |
---|
| 2389 | |
---|
| 2390 | } |
---|
| 2391 | |
---|
| 2392 | |
---|
| 2393 | //----- dose distribution image -----// |
---|
| 2394 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 2395 | |
---|
| 2396 | newDoseDist(); |
---|
| 2397 | |
---|
| 2398 | // dose distrbution image size |
---|
| 2399 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2400 | convertEndian(ctmp, size[0]); |
---|
| 2401 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2402 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2403 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2404 | G4cout << "Dose dist. image size : (" |
---|
[1142] | 2405 | << size[0] << ", " |
---|
| 2406 | << size[1] << ", " |
---|
| 2407 | << size[2] << ")" |
---|
[1347] | 2408 | << G4endl; |
---|
[1142] | 2409 | } |
---|
| 2410 | kDose[ndose].setSize(size); |
---|
| 2411 | |
---|
| 2412 | // dose distribution max. & min. |
---|
| 2413 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 2414 | convertEndian(ctmp, minmax[0]); |
---|
| 2415 | convertEndian(ctmp+2, minmax[1]); |
---|
| 2416 | |
---|
| 2417 | // dose distribution unit |
---|
| 2418 | char dunit[13]; |
---|
| 2419 | ifile.read((char *)dunit, 12); |
---|
| 2420 | std::string sdunit = dunit; |
---|
| 2421 | setDoseDistUnit(sdunit, ndose); |
---|
| 2422 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2423 | G4cout << "Dose dist. unit : " << kDoseUnit << G4endl; |
---|
[1142] | 2424 | } |
---|
| 2425 | |
---|
| 2426 | // dose distribution scaling |
---|
| 2427 | ifile.read((char *)ctmp, 4); // sizeof(float) |
---|
| 2428 | convertEndian(ctmp, scale); |
---|
| 2429 | kDose[ndose].setScale(dscale = scale); |
---|
| 2430 | |
---|
| 2431 | double dminmax[2]; |
---|
| 2432 | for(int i = 0; i < 2; i++) dminmax[i] = minmax[i]*dscale; |
---|
| 2433 | kDose[ndose].setMinMax(dminmax); |
---|
| 2434 | |
---|
| 2435 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2436 | G4cout << "Dose dist. image min., max., scale : " |
---|
[1142] | 2437 | << dminmax[0] << ", " |
---|
| 2438 | << dminmax[1] << ", " |
---|
[1347] | 2439 | << scale << G4endl; |
---|
[1142] | 2440 | } |
---|
| 2441 | |
---|
| 2442 | // dose distribution image |
---|
| 2443 | int dsize = size[0]*size[1]; |
---|
[1347] | 2444 | if(DEBUG || kVerbose > 0) G4cout << "Dose dist. (" << dsize << "): "; |
---|
[1142] | 2445 | char * di = new char[dsize*sizeof(short)]; |
---|
| 2446 | short * shimage = new short[dsize]; |
---|
| 2447 | for(int z = 0; z < size[2]; z++) { |
---|
| 2448 | ifile.read((char *)di, dsize*sizeof(short)); |
---|
| 2449 | double * dimage = new double[dsize]; |
---|
| 2450 | for(int xy = 0; xy < dsize; xy++) { |
---|
| 2451 | convertEndian(di+xy*sizeof(short), shimage[xy]); |
---|
| 2452 | dimage[xy] = shimage[xy]*dscale; |
---|
| 2453 | } |
---|
| 2454 | kDose[ndose].addImage(dimage); |
---|
| 2455 | |
---|
[1347] | 2456 | if(DEBUG || kVerbose > 0) G4cout << "[" << z << "]" << dimage[(size_t)(dsize*0.55)] << ", "; |
---|
[1142] | 2457 | |
---|
| 2458 | if(DEBUG || kVerbose > 0) { |
---|
| 2459 | for(int j = 0; j < dsize; j++) { |
---|
| 2460 | if(dimage[j] < 0) |
---|
[1347] | 2461 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 2462 | << dimage[j] << ", "; |
---|
| 2463 | } |
---|
| 2464 | } |
---|
| 2465 | } |
---|
| 2466 | delete [] shimage; |
---|
| 2467 | delete [] di; |
---|
[1347] | 2468 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 2469 | |
---|
| 2470 | ifile.read((char *)ctmp, 3*4); // 3*sizeof(int) |
---|
| 2471 | convertEndian(ctmp, iCenter[0]); |
---|
| 2472 | convertEndian(ctmp+4, iCenter[1]); |
---|
| 2473 | convertEndian(ctmp+8, iCenter[2]); |
---|
| 2474 | for(int i = 0; i < 3; i++) fCenter[i] = (float)iCenter[i]; |
---|
| 2475 | kDose[ndose].setCenterPosition(fCenter); |
---|
| 2476 | |
---|
| 2477 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2478 | G4cout << "Dose dist. image relative location : (" |
---|
[1142] | 2479 | << fCenter[0] << ", " |
---|
| 2480 | << fCenter[1] << ", " |
---|
[1347] | 2481 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 2482 | } |
---|
| 2483 | |
---|
| 2484 | |
---|
| 2485 | } |
---|
| 2486 | |
---|
| 2487 | //----- ROI image -----// |
---|
| 2488 | if(kPointerToROIData != 0) { |
---|
| 2489 | |
---|
| 2490 | newROI(); |
---|
| 2491 | |
---|
| 2492 | // ROI image size |
---|
| 2493 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2494 | convertEndian(ctmp, size[0]); |
---|
| 2495 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2496 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2497 | kRoi[0].setSize(size); |
---|
| 2498 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2499 | G4cout << "ROI image size : (" |
---|
[1142] | 2500 | << size[0] << ", " |
---|
| 2501 | << size[1] << ", " |
---|
| 2502 | << size[2] << ")" |
---|
[1347] | 2503 | << G4endl; |
---|
[1142] | 2504 | } |
---|
| 2505 | |
---|
| 2506 | // ROI max. & min. |
---|
| 2507 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 2508 | convertEndian(ctmp, minmax[0]); |
---|
| 2509 | convertEndian(ctmp+sizeof(short), minmax[1]); |
---|
| 2510 | kRoi[0].setMinMax(minmax); |
---|
| 2511 | |
---|
| 2512 | // ROI distribution scaling |
---|
| 2513 | ifile.read((char *)ctmp, sizeof(float)); |
---|
| 2514 | convertEndian(ctmp, scale); |
---|
| 2515 | kRoi[0].setScale(dscale = scale); |
---|
| 2516 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2517 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 2518 | << minmax[0] << ", " |
---|
| 2519 | << minmax[1] << ", " |
---|
[1347] | 2520 | << scale << G4endl; |
---|
[1142] | 2521 | } |
---|
| 2522 | |
---|
| 2523 | // ROI image |
---|
| 2524 | int rsize = size[0]*size[1]; |
---|
| 2525 | char * ri = new char[rsize*sizeof(short)]; |
---|
| 2526 | for(int i = 0; i < size[2]; i++) { |
---|
| 2527 | ifile.read((char *)ri, rsize*sizeof(short)); |
---|
| 2528 | short * rimage = new short[rsize]; |
---|
| 2529 | for(int j = 0; j < rsize; j++) { |
---|
| 2530 | convertEndian(ri+j*sizeof(short), rimage[j]); |
---|
| 2531 | } |
---|
| 2532 | kRoi[0].addImage(rimage); |
---|
| 2533 | |
---|
| 2534 | } |
---|
| 2535 | delete [] ri; |
---|
| 2536 | |
---|
| 2537 | // ROI relative location |
---|
| 2538 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2539 | convertEndian(ctmp, iCenter[0]); |
---|
| 2540 | convertEndian(ctmp+sizeof(int), iCenter[1]); |
---|
| 2541 | convertEndian(ctmp+2*sizeof(int), iCenter[2]); |
---|
| 2542 | for(int i = 0; i < 3; i++) fCenter[i] = iCenter[i]; |
---|
| 2543 | kRoi[0].setCenterPosition(fCenter); |
---|
| 2544 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2545 | G4cout << "ROI image relative location : (" |
---|
[1142] | 2546 | << fCenter[0] << ", " |
---|
| 2547 | << fCenter[1] << ", " |
---|
[1347] | 2548 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 2549 | } |
---|
| 2550 | |
---|
| 2551 | } |
---|
| 2552 | |
---|
| 2553 | //----- track information -----// |
---|
| 2554 | if(kPointerToTrackData != 0) { |
---|
| 2555 | |
---|
| 2556 | // track |
---|
| 2557 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2558 | int ntrk; |
---|
| 2559 | convertEndian(ctmp, ntrk); |
---|
| 2560 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2561 | G4cout << "# of tracks: " << ntrk << G4endl; |
---|
[1142] | 2562 | } |
---|
| 2563 | |
---|
| 2564 | // v4 |
---|
| 2565 | std::vector<float *> trkv4; |
---|
| 2566 | |
---|
| 2567 | // track position |
---|
| 2568 | for(int i = 0; i < ntrk; i++) { |
---|
| 2569 | float * tp = new float[6]; |
---|
| 2570 | |
---|
| 2571 | ifile.read((char *)ctmp, sizeof(float)*3); |
---|
[1347] | 2572 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << i << ": " ; |
---|
[1142] | 2573 | for(int j = 0; j < 3; j++) { |
---|
| 2574 | convertEndian(ctmp+j*sizeof(float), tp[j]); |
---|
[1347] | 2575 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << tp[j] << ", "; |
---|
[1142] | 2576 | } |
---|
| 2577 | |
---|
| 2578 | ifile.read((char *)ctmp, sizeof(float)*3); |
---|
| 2579 | for(int j = 0; j < 3; j++) { |
---|
| 2580 | convertEndian(ctmp+j*sizeof(float), tp[j+3]); |
---|
[1347] | 2581 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << tp[j+3] << ", "; |
---|
[1142] | 2582 | } |
---|
| 2583 | addTrack(tp); |
---|
[1347] | 2584 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << G4endl; |
---|
[1142] | 2585 | |
---|
| 2586 | // v4 |
---|
| 2587 | trkv4.push_back(tp); |
---|
| 2588 | } |
---|
| 2589 | |
---|
| 2590 | //v4 |
---|
| 2591 | unsigned char trkcolorv4[3]; |
---|
| 2592 | |
---|
| 2593 | // track color |
---|
| 2594 | for(int i = 0; i < ntrk; i++) { |
---|
| 2595 | unsigned char * rgb = new unsigned char[3]; |
---|
| 2596 | ifile.read((char *)rgb, 3); |
---|
| 2597 | addTrackColor(rgb); |
---|
| 2598 | |
---|
| 2599 | // v4 |
---|
| 2600 | for(int j = 0; j < 3; j++) trkcolorv4[j] = rgb[j]; |
---|
| 2601 | std::vector<float *> trk; |
---|
| 2602 | trk.push_back(trkv4[i]); |
---|
| 2603 | addTrack(trk, trkcolorv4); |
---|
| 2604 | |
---|
| 2605 | } |
---|
| 2606 | |
---|
| 2607 | } |
---|
| 2608 | |
---|
| 2609 | ifile.close(); |
---|
| 2610 | |
---|
| 2611 | return true; |
---|
| 2612 | } |
---|
| 2613 | bool G4GMocrenIO::retrieveData3(char * _filename) { |
---|
| 2614 | kFileName = _filename; |
---|
| 2615 | return retrieveData(); |
---|
| 2616 | } |
---|
| 2617 | |
---|
| 2618 | // |
---|
| 2619 | bool G4GMocrenIO::retrieveData2() { |
---|
| 2620 | |
---|
| 2621 | bool DEBUG = false;// |
---|
| 2622 | |
---|
| 2623 | // input file open |
---|
| 2624 | std::ifstream ifile(kFileName.c_str(), std::ios_base::in|std::ios_base::binary); |
---|
| 2625 | if(!ifile) { |
---|
[1347] | 2626 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 2627 | G4cout << "Cannot open file: " << kFileName |
---|
| 2628 | << " in G4GMocrenIO::retrieveData2()." << G4endl; |
---|
[1142] | 2629 | return false; |
---|
| 2630 | } |
---|
| 2631 | |
---|
| 2632 | // data buffer |
---|
| 2633 | char ctmp[12]; |
---|
| 2634 | |
---|
| 2635 | // file identifier |
---|
| 2636 | char verid[9]; |
---|
| 2637 | ifile.read((char *)verid, 8); |
---|
| 2638 | |
---|
| 2639 | // file version |
---|
| 2640 | unsigned char ver; |
---|
| 2641 | ifile.read((char *)&ver, 1); |
---|
| 2642 | std::stringstream ss; |
---|
| 2643 | ss << (int)ver; |
---|
| 2644 | kVersion = ss.str(); |
---|
[1347] | 2645 | if(DEBUG || kVerbose > 0) G4cout << "File version : " << kVersion << G4endl; |
---|
[1142] | 2646 | |
---|
| 2647 | // id of version 1 |
---|
| 2648 | char idtmp[IDLENGTH]; |
---|
| 2649 | ifile.read((char *)idtmp, IDLENGTH); |
---|
| 2650 | kId = idtmp; |
---|
| 2651 | // version of version 1 |
---|
| 2652 | char vertmp[VERLENGTH]; |
---|
| 2653 | ifile.read((char *)vertmp, VERLENGTH); |
---|
| 2654 | |
---|
| 2655 | // endian |
---|
| 2656 | ifile.read((char *)&kLittleEndianInput, sizeof(char)); |
---|
| 2657 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2658 | G4cout << "Endian : "; |
---|
[1142] | 2659 | if(kLittleEndianInput == 1) |
---|
[1347] | 2660 | G4cout << " little" << G4endl; |
---|
[1142] | 2661 | else { |
---|
[1347] | 2662 | G4cout << " big" << G4endl; |
---|
[1142] | 2663 | } |
---|
| 2664 | } |
---|
| 2665 | |
---|
| 2666 | // voxel spacings for all images |
---|
| 2667 | ifile.read((char *)ctmp, 12); |
---|
| 2668 | convertEndian(ctmp, kVoxelSpacing[0]); |
---|
| 2669 | convertEndian(ctmp+4, kVoxelSpacing[1]); |
---|
| 2670 | convertEndian(ctmp+8, kVoxelSpacing[2]); |
---|
| 2671 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2672 | G4cout << "Voxel spacing : (" |
---|
[1142] | 2673 | << kVoxelSpacing[0] << ", " |
---|
| 2674 | << kVoxelSpacing[1] << ", " |
---|
| 2675 | << kVoxelSpacing[2] |
---|
[1347] | 2676 | << ") mm " << G4endl; |
---|
[1142] | 2677 | } |
---|
| 2678 | |
---|
| 2679 | |
---|
| 2680 | // offset from file starting point to the modality image data |
---|
| 2681 | ifile.read((char *)ctmp, 4); |
---|
| 2682 | convertEndian(ctmp, kPointerToModalityData); |
---|
| 2683 | |
---|
| 2684 | // offset from file starting point to the dose image data |
---|
| 2685 | unsigned int ptddd; |
---|
| 2686 | ifile.read((char *)ctmp, 4); |
---|
| 2687 | convertEndian(ctmp, ptddd); |
---|
| 2688 | kPointerToDoseDistData.push_back(ptddd); |
---|
| 2689 | |
---|
| 2690 | // offset from file starting point to the ROI image data |
---|
| 2691 | ifile.read((char *)ctmp, 4); |
---|
| 2692 | convertEndian(ctmp, kPointerToROIData); |
---|
| 2693 | |
---|
| 2694 | // offset from file starting point to the track data |
---|
| 2695 | ifile.read((char *)ctmp, 4); |
---|
| 2696 | convertEndian(ctmp, kPointerToTrackData); |
---|
| 2697 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2698 | G4cout << "Each pointer to data : " |
---|
[1142] | 2699 | << kPointerToModalityData << ", " |
---|
| 2700 | << kPointerToDoseDistData[0] << ", " |
---|
| 2701 | << kPointerToROIData << ", " |
---|
[1347] | 2702 | << kPointerToTrackData << G4endl; |
---|
[1142] | 2703 | } |
---|
| 2704 | |
---|
| 2705 | if(kPointerToModalityData == 0 && kPointerToDoseDistData.size() == 0 && |
---|
| 2706 | kPointerToROIData == 0 && kPointerToTrackData == 0) { |
---|
| 2707 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2708 | G4cout << "No data." << G4endl; |
---|
[1142] | 2709 | } |
---|
| 2710 | return false; |
---|
| 2711 | } |
---|
| 2712 | |
---|
| 2713 | // event number |
---|
| 2714 | /* ver 1 |
---|
| 2715 | ifile.read(ctmp, sizeof(int)); |
---|
| 2716 | convertEndian(ctmp, numberOfEvents); |
---|
| 2717 | */ |
---|
| 2718 | |
---|
| 2719 | int size[3]; |
---|
| 2720 | float scale; |
---|
| 2721 | double dscale; |
---|
| 2722 | short minmax[2]; |
---|
| 2723 | float fCenter[3]; |
---|
| 2724 | int iCenter[3]; |
---|
| 2725 | |
---|
| 2726 | //----- Modality image -----// |
---|
| 2727 | // modality image size |
---|
| 2728 | ifile.read(ctmp, 3*sizeof(int)); |
---|
| 2729 | convertEndian(ctmp, size[0]); |
---|
| 2730 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2731 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2732 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2733 | G4cout << "Modality image size : (" |
---|
[1142] | 2734 | << size[0] << ", " |
---|
| 2735 | << size[1] << ", " |
---|
| 2736 | << size[2] << ")" |
---|
[1347] | 2737 | << G4endl; |
---|
[1142] | 2738 | } |
---|
| 2739 | kModality.setSize(size); |
---|
| 2740 | |
---|
| 2741 | // modality image voxel spacing |
---|
| 2742 | /* |
---|
| 2743 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 2744 | convertEndian(ctmp, modalityImageVoxelSpacing[0]); |
---|
| 2745 | convertEndian(ctmp+sizeof(float), modalityImageVoxelSpacing[1]); |
---|
| 2746 | convertEndian(ctmp+2*sizeof(float), modalityImageVoxelSpacing[2]); |
---|
| 2747 | */ |
---|
| 2748 | |
---|
| 2749 | if(kPointerToModalityData != 0) { |
---|
| 2750 | |
---|
| 2751 | // modality density max. & min. |
---|
| 2752 | ifile.read((char *)ctmp, 4); |
---|
| 2753 | convertEndian(ctmp, minmax[0]); |
---|
| 2754 | convertEndian(ctmp+2, minmax[1]); |
---|
| 2755 | kModality.setMinMax(minmax); |
---|
| 2756 | |
---|
| 2757 | // modality density scale |
---|
| 2758 | ifile.read((char *)ctmp, 4); |
---|
| 2759 | convertEndian(ctmp, scale); |
---|
| 2760 | kModality.setScale(dscale = scale); |
---|
| 2761 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2762 | G4cout << "Modality image min., max., scale : " |
---|
[1142] | 2763 | << minmax[0] << ", " |
---|
| 2764 | << minmax[1] << ", " |
---|
[1347] | 2765 | << scale << G4endl; |
---|
[1142] | 2766 | } |
---|
| 2767 | |
---|
| 2768 | // modality density |
---|
| 2769 | int psize = size[0]*size[1]; |
---|
[1347] | 2770 | if(DEBUG || kVerbose > 0) G4cout << "Modality image (" << psize << "): "; |
---|
[1142] | 2771 | char * cimage = new char[psize*sizeof(short)]; |
---|
| 2772 | for(int i = 0; i < size[2]; i++) { |
---|
| 2773 | ifile.read((char *)cimage, psize*sizeof(short)); |
---|
| 2774 | short * mimage = new short[psize]; |
---|
| 2775 | for(int j = 0; j < psize; j++) { |
---|
| 2776 | convertEndian(cimage+j*sizeof(short), mimage[j]); |
---|
| 2777 | } |
---|
| 2778 | kModality.addImage(mimage); |
---|
| 2779 | |
---|
[1347] | 2780 | if(DEBUG || kVerbose > 0) G4cout << "[" << i << "]" << mimage[(size_t)(psize*0.55)] << ", "; |
---|
[1142] | 2781 | } |
---|
[1347] | 2782 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 2783 | delete [] cimage; |
---|
| 2784 | |
---|
| 2785 | // modality desity map for CT value |
---|
| 2786 | size_t msize = minmax[1]-minmax[0]+1; |
---|
[1347] | 2787 | if(DEBUG || kVerbose > 0) G4cout << "msize: " << msize << G4endl; |
---|
[1142] | 2788 | char * pdmap = new char[msize*sizeof(float)]; |
---|
| 2789 | ifile.read((char *)pdmap, msize*sizeof(float)); |
---|
| 2790 | float ftmp; |
---|
| 2791 | for(int i = 0; i < (int)msize; i++) { |
---|
| 2792 | convertEndian(pdmap+i*sizeof(float), ftmp); |
---|
| 2793 | kModalityImageDensityMap.push_back(ftmp); |
---|
| 2794 | } |
---|
| 2795 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2796 | G4cout << "density map : " << std::ends; |
---|
[1142] | 2797 | for(int i = 0; i < 10; i++) |
---|
[1347] | 2798 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 2799 | G4cout << G4endl; |
---|
| 2800 | for(int i = 0; i < 10; i++) G4cout << ".."; |
---|
| 2801 | G4cout << G4endl; |
---|
[1142] | 2802 | for(size_t i =kModalityImageDensityMap.size() - 10; i <kModalityImageDensityMap.size(); i++) |
---|
[1347] | 2803 | G4cout <<kModalityImageDensityMap[i] << ", "; |
---|
| 2804 | G4cout << G4endl; |
---|
[1142] | 2805 | } |
---|
| 2806 | |
---|
| 2807 | } |
---|
| 2808 | |
---|
| 2809 | |
---|
| 2810 | //----- dose distribution image -----// |
---|
| 2811 | if(kPointerToDoseDistData[0] != 0) { |
---|
| 2812 | |
---|
| 2813 | newDoseDist(); |
---|
| 2814 | |
---|
| 2815 | // dose distrbution image size |
---|
| 2816 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2817 | convertEndian(ctmp, size[0]); |
---|
| 2818 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2819 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2820 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2821 | G4cout << "Dose dist. image size : (" |
---|
[1142] | 2822 | << size[0] << ", " |
---|
| 2823 | << size[1] << ", " |
---|
| 2824 | << size[2] << ")" |
---|
[1347] | 2825 | << G4endl; |
---|
[1142] | 2826 | } |
---|
| 2827 | kDose[0].setSize(size); |
---|
| 2828 | |
---|
| 2829 | // dose distribution max. & min. |
---|
| 2830 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 2831 | convertEndian(ctmp, minmax[0]); |
---|
| 2832 | convertEndian(ctmp+2, minmax[1]); |
---|
| 2833 | // dose distribution scaling |
---|
| 2834 | ifile.read((char *)ctmp, sizeof(float)); |
---|
| 2835 | convertEndian(ctmp, scale); |
---|
| 2836 | kDose[0].setScale(dscale = scale); |
---|
| 2837 | |
---|
| 2838 | double dminmax[2]; |
---|
| 2839 | for(int i = 0; i < 2; i++) dminmax[i] = minmax[i]*dscale; |
---|
| 2840 | kDose[0].setMinMax(dminmax); |
---|
| 2841 | |
---|
| 2842 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2843 | G4cout << "Dose dist. image min., max., scale : " |
---|
[1142] | 2844 | << dminmax[0] << ", " |
---|
| 2845 | << dminmax[1] << ", " |
---|
[1347] | 2846 | << scale << G4endl; |
---|
[1142] | 2847 | } |
---|
| 2848 | |
---|
| 2849 | // dose distribution image |
---|
| 2850 | int dsize = size[0]*size[1]; |
---|
[1347] | 2851 | if(DEBUG || kVerbose > 0) G4cout << "Dose dist. (" << dsize << "): "; |
---|
[1142] | 2852 | char * di = new char[dsize*sizeof(short)]; |
---|
| 2853 | short * shimage = new short[dsize]; |
---|
| 2854 | for(int z = 0; z < size[2]; z++) { |
---|
| 2855 | ifile.read((char *)di, dsize*sizeof(short)); |
---|
| 2856 | double * dimage = new double[dsize]; |
---|
| 2857 | for(int xy = 0; xy < dsize; xy++) { |
---|
| 2858 | convertEndian(di+xy*sizeof(short), shimage[xy]); |
---|
| 2859 | dimage[xy] = shimage[xy]*dscale; |
---|
| 2860 | } |
---|
| 2861 | kDose[0].addImage(dimage); |
---|
| 2862 | |
---|
[1347] | 2863 | if(DEBUG || kVerbose > 0) G4cout << "[" << z << "]" << dimage[(size_t)(dsize*0.55)] << ", "; |
---|
[1142] | 2864 | |
---|
| 2865 | if(DEBUG || kVerbose > 0) { |
---|
| 2866 | for(int j = 0; j < dsize; j++) { |
---|
| 2867 | if(dimage[j] < 0) |
---|
[1347] | 2868 | G4cout << "[" << j << "," << z << "]" |
---|
[1142] | 2869 | << dimage[j] << ", "; |
---|
| 2870 | } |
---|
| 2871 | } |
---|
| 2872 | } |
---|
| 2873 | delete [] shimage; |
---|
| 2874 | delete [] di; |
---|
[1347] | 2875 | if(DEBUG || kVerbose > 0) G4cout << G4endl; |
---|
[1142] | 2876 | |
---|
| 2877 | /* ver 1 |
---|
| 2878 | float doseDist; |
---|
| 2879 | int dosePid; |
---|
| 2880 | double * doseData = new double[numDoseImageVoxels]; |
---|
| 2881 | for(int i = 0; i < numDose; i++) { |
---|
| 2882 | ifile.read(ctmp, sizeof(int)); |
---|
| 2883 | convertEndian(ctmp, dosePid); |
---|
| 2884 | for(int j = 0; j < numDoseImageVoxels; j++) { |
---|
| 2885 | ifile.read(ctmp, sizeof(float)); |
---|
| 2886 | convertEndian(ctmp, doseDist); |
---|
| 2887 | doseData[j] = doseDist; |
---|
| 2888 | } |
---|
| 2889 | setDose(dosePid, doseData); |
---|
| 2890 | } |
---|
| 2891 | delete [] doseData; |
---|
| 2892 | if(totalDose == NULL) totalDose = new double[numDoseImageVoxels]; |
---|
| 2893 | for(int i = 0; i < numDoseImageVoxels; i++) { |
---|
| 2894 | ifile.read(ctmp, sizeof(float)); |
---|
| 2895 | convertEndian(ctmp, doseDist); |
---|
| 2896 | totalDose[i] = doseDist; |
---|
| 2897 | } |
---|
| 2898 | */ |
---|
| 2899 | |
---|
| 2900 | /* ver 1 |
---|
| 2901 | // relative location between the two images |
---|
| 2902 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 2903 | convertEndian(ctmp, relativeLocation[0]); |
---|
| 2904 | convertEndian(ctmp+sizeof(float), relativeLocation[1]); |
---|
| 2905 | convertEndian(ctmp+2*sizeof(float), relativeLocation[2]); |
---|
| 2906 | */ |
---|
| 2907 | |
---|
| 2908 | // relative location of the dose distribution image for |
---|
| 2909 | // the modality image |
---|
| 2910 | //ofile.write((char *)relativeLocation, 3*sizeof(float)); |
---|
| 2911 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2912 | convertEndian(ctmp, iCenter[0]); |
---|
| 2913 | convertEndian(ctmp+sizeof(int), iCenter[1]); |
---|
| 2914 | convertEndian(ctmp+2*sizeof(int), iCenter[2]); |
---|
| 2915 | for(int i = 0; i < 3; i++) fCenter[i] = (float)iCenter[i]; |
---|
| 2916 | kDose[0].setCenterPosition(fCenter); |
---|
| 2917 | |
---|
| 2918 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2919 | G4cout << "Dose dist. image relative location : (" |
---|
[1142] | 2920 | << fCenter[0] << ", " |
---|
| 2921 | << fCenter[1] << ", " |
---|
[1347] | 2922 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 2923 | } |
---|
| 2924 | |
---|
| 2925 | |
---|
| 2926 | } |
---|
| 2927 | |
---|
| 2928 | //----- ROI image -----// |
---|
| 2929 | if(kPointerToROIData != 0) { |
---|
| 2930 | |
---|
| 2931 | newROI(); |
---|
| 2932 | |
---|
| 2933 | // ROI image size |
---|
| 2934 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2935 | convertEndian(ctmp, size[0]); |
---|
| 2936 | convertEndian(ctmp+sizeof(int), size[1]); |
---|
| 2937 | convertEndian(ctmp+2*sizeof(int), size[2]); |
---|
| 2938 | kRoi[0].setSize(size); |
---|
| 2939 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2940 | G4cout << "ROI image size : (" |
---|
[1142] | 2941 | << size[0] << ", " |
---|
| 2942 | << size[1] << ", " |
---|
| 2943 | << size[2] << ")" |
---|
[1347] | 2944 | << G4endl; |
---|
[1142] | 2945 | } |
---|
| 2946 | |
---|
| 2947 | // ROI max. & min. |
---|
| 2948 | ifile.read((char *)ctmp, sizeof(short)*2); |
---|
| 2949 | convertEndian(ctmp, minmax[0]); |
---|
| 2950 | convertEndian(ctmp+sizeof(short), minmax[1]); |
---|
| 2951 | kRoi[0].setMinMax(minmax); |
---|
| 2952 | |
---|
| 2953 | // ROI distribution scaling |
---|
| 2954 | ifile.read((char *)ctmp, sizeof(float)); |
---|
| 2955 | convertEndian(ctmp, scale); |
---|
| 2956 | kRoi[0].setScale(dscale = scale); |
---|
| 2957 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2958 | G4cout << "ROI image min., max., scale : " |
---|
[1142] | 2959 | << minmax[0] << ", " |
---|
| 2960 | << minmax[1] << ", " |
---|
[1347] | 2961 | << scale << G4endl; |
---|
[1142] | 2962 | } |
---|
| 2963 | |
---|
| 2964 | // ROI image |
---|
| 2965 | int rsize = size[0]*size[1]; |
---|
| 2966 | char * ri = new char[rsize*sizeof(short)]; |
---|
| 2967 | for(int i = 0; i < size[2]; i++) { |
---|
| 2968 | ifile.read((char *)ri, rsize*sizeof(short)); |
---|
| 2969 | short * rimage = new short[rsize]; |
---|
| 2970 | for(int j = 0; j < rsize; j++) { |
---|
| 2971 | convertEndian(ri+j*sizeof(short), rimage[j]); |
---|
| 2972 | } |
---|
| 2973 | kRoi[0].addImage(rimage); |
---|
| 2974 | |
---|
| 2975 | } |
---|
| 2976 | delete [] ri; |
---|
| 2977 | |
---|
| 2978 | // ROI relative location |
---|
| 2979 | ifile.read((char *)ctmp, 3*sizeof(int)); |
---|
| 2980 | convertEndian(ctmp, iCenter[0]); |
---|
| 2981 | convertEndian(ctmp+sizeof(int), iCenter[1]); |
---|
| 2982 | convertEndian(ctmp+2*sizeof(int), iCenter[2]); |
---|
| 2983 | for(int i = 0; i < 3; i++) fCenter[i] = iCenter[i]; |
---|
| 2984 | kRoi[0].setCenterPosition(fCenter); |
---|
| 2985 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 2986 | G4cout << "ROI image relative location : (" |
---|
[1142] | 2987 | << fCenter[0] << ", " |
---|
| 2988 | << fCenter[1] << ", " |
---|
[1347] | 2989 | << fCenter[2] << ")" << G4endl; |
---|
[1142] | 2990 | } |
---|
| 2991 | |
---|
| 2992 | } |
---|
| 2993 | |
---|
| 2994 | //----- track information -----// |
---|
| 2995 | if(kPointerToTrackData != 0) { |
---|
| 2996 | |
---|
| 2997 | // track |
---|
| 2998 | ifile.read((char *)ctmp, sizeof(int)); |
---|
| 2999 | int ntrk; |
---|
| 3000 | convertEndian(ctmp, ntrk); |
---|
| 3001 | if(DEBUG || kVerbose > 0) { |
---|
[1347] | 3002 | G4cout << "# of tracks: " << ntrk << G4endl; |
---|
[1142] | 3003 | } |
---|
| 3004 | |
---|
| 3005 | //v4 |
---|
| 3006 | unsigned char trkcolorv4[3] = {255, 0, 0}; |
---|
| 3007 | |
---|
| 3008 | for(int i = 0; i < ntrk; i++) { |
---|
| 3009 | float * tp = new float[6]; |
---|
| 3010 | // v4 |
---|
| 3011 | std::vector<float *> trkv4; |
---|
| 3012 | |
---|
| 3013 | ifile.read((char *)ctmp, sizeof(float)*3); |
---|
[1347] | 3014 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << i << ": " ; |
---|
[1142] | 3015 | for(int j = 0; j < 3; j++) { |
---|
| 3016 | convertEndian(ctmp+j*sizeof(float), tp[j]); |
---|
[1347] | 3017 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << tp[j] << ", "; |
---|
[1142] | 3018 | } |
---|
| 3019 | |
---|
| 3020 | ifile.read((char *)ctmp, sizeof(float)*3); |
---|
| 3021 | for(int j = 0; j < 3; j++) { |
---|
| 3022 | convertEndian(ctmp+j*sizeof(float), tp[j+3]); |
---|
[1347] | 3023 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << tp[j+3] << ", "; |
---|
[1142] | 3024 | } |
---|
| 3025 | |
---|
| 3026 | kSteps.push_back(tp); |
---|
| 3027 | // v4 |
---|
| 3028 | trkv4.push_back(tp); |
---|
| 3029 | addTrack(trkv4, trkcolorv4); |
---|
| 3030 | |
---|
[1347] | 3031 | if(DEBUG || kVerbose > 0) if(i < 10) G4cout << G4endl; |
---|
[1142] | 3032 | } |
---|
| 3033 | |
---|
| 3034 | } |
---|
| 3035 | |
---|
| 3036 | /* ver 1 |
---|
| 3037 | // track |
---|
| 3038 | int ntracks; |
---|
| 3039 | ifile.read(ctmp, sizeof(int)); |
---|
| 3040 | convertEndian(ctmp, ntracks); |
---|
| 3041 | // track displacement |
---|
| 3042 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 3043 | convertEndian(ctmp, trackDisplacement[0]); |
---|
| 3044 | convertEndian(ctmp+sizeof(float), trackDisplacement[2]); // exchanged with [1] |
---|
| 3045 | convertEndian(ctmp+2*sizeof(float), trackDisplacement[1]); |
---|
| 3046 | // |
---|
| 3047 | //for(int i = 0; i < ntracks && i < 100; i++) { |
---|
| 3048 | for(int i = 0; i < ntracks; i++) { |
---|
| 3049 | DicomDoseTrack trk; |
---|
| 3050 | short trackid, parentid, pid; |
---|
| 3051 | int npoints; |
---|
| 3052 | ifile.read(ctmp, sizeof(short)); |
---|
| 3053 | convertEndian(ctmp, trackid); |
---|
| 3054 | trk.setID(trackid); |
---|
| 3055 | ifile.read(ctmp, sizeof(short)); |
---|
| 3056 | convertEndian(ctmp, parentid); |
---|
| 3057 | trk.setParentID(parentid); |
---|
| 3058 | ifile.read(ctmp, sizeof(short)); |
---|
| 3059 | convertEndian(ctmp, pid); |
---|
| 3060 | trk.setPID(pid); |
---|
| 3061 | ifile.read(ctmp, sizeof(int)); |
---|
| 3062 | convertEndian(ctmp, npoints); |
---|
| 3063 | for(int i = 0; i < npoints; i++) { |
---|
| 3064 | ifile.read(ctmp, 3*sizeof(float)); |
---|
| 3065 | // storing only start and end points |
---|
| 3066 | //if(i == 0 || i == npoints - 1) { |
---|
| 3067 | float * point = new float[3]; |
---|
| 3068 | convertEndian(ctmp, point[0]); |
---|
| 3069 | convertEndian(ctmp+sizeof(float), point[1]); |
---|
| 3070 | convertEndian(ctmp+2*sizeof(float), point[2]); |
---|
| 3071 | trk.addPoint(point); |
---|
| 3072 | //} |
---|
| 3073 | } |
---|
| 3074 | track.push_back(trk); |
---|
| 3075 | } |
---|
| 3076 | */ |
---|
| 3077 | |
---|
| 3078 | ifile.close(); |
---|
| 3079 | |
---|
| 3080 | return true; |
---|
| 3081 | } |
---|
| 3082 | |
---|
| 3083 | bool G4GMocrenIO::retrieveData2(char * _filename) { |
---|
| 3084 | kFileName = _filename; |
---|
| 3085 | return retrieveData(); |
---|
| 3086 | } |
---|
| 3087 | |
---|
| 3088 | void G4GMocrenIO::setID() { |
---|
| 3089 | time_t t; |
---|
| 3090 | time(&t); |
---|
| 3091 | |
---|
| 3092 | tm * ti; |
---|
| 3093 | ti = localtime(&t); |
---|
| 3094 | |
---|
| 3095 | char cmonth[12][4] = {"Jan", "Feb", "Mar", "Apr", |
---|
| 3096 | "May", "Jun", "Jul", "Aug", |
---|
| 3097 | "Sep", "Oct", "Nov", "Dec"}; |
---|
| 3098 | std::stringstream ss; |
---|
| 3099 | ss << std::setfill('0') |
---|
| 3100 | << std::setw(2) |
---|
| 3101 | << ti->tm_hour << ":" |
---|
| 3102 | << std::setw(2) |
---|
| 3103 | << ti->tm_min << ":" |
---|
| 3104 | << std::setw(2) |
---|
| 3105 | << ti->tm_sec << "," |
---|
| 3106 | << cmonth[ti->tm_mon] << "." |
---|
| 3107 | << std::setw(2) |
---|
| 3108 | << ti->tm_mday << "," |
---|
| 3109 | << ti->tm_year+1900; |
---|
| 3110 | |
---|
| 3111 | kId = ss.str(); |
---|
| 3112 | } |
---|
| 3113 | |
---|
| 3114 | // get & set the file version |
---|
| 3115 | std::string & G4GMocrenIO::getVersion() {return kVersion;} |
---|
| 3116 | void G4GMocrenIO::setVersion(std::string & _version) {kVersion = _version;} |
---|
| 3117 | |
---|
| 3118 | // set endians of input/output data |
---|
| 3119 | void G4GMocrenIO::setLittleEndianInput(bool _little) {kLittleEndianInput = _little;} |
---|
| 3120 | void G4GMocrenIO::setLittleEndianOutput(bool _little) {kLittleEndianOutput = _little;} |
---|
| 3121 | |
---|
| 3122 | // voxel spacing |
---|
| 3123 | void G4GMocrenIO::setVoxelSpacing(float _spacing[3]) { |
---|
| 3124 | for(int i = 0; i < 3; i++) kVoxelSpacing[i] = _spacing[i]; |
---|
| 3125 | } |
---|
| 3126 | void G4GMocrenIO::getVoxelSpacing(float _spacing[3]) { |
---|
| 3127 | for(int i = 0; i < 3; i++) _spacing[i] = kVoxelSpacing[i]; |
---|
| 3128 | } |
---|
| 3129 | |
---|
| 3130 | // get & set number of events |
---|
| 3131 | int & G4GMocrenIO::getNumberOfEvents() { |
---|
| 3132 | return kNumberOfEvents; |
---|
| 3133 | } |
---|
| 3134 | void G4GMocrenIO::setNumberOfEvents(int & _numberOfEvents) { |
---|
| 3135 | kNumberOfEvents = _numberOfEvents; |
---|
| 3136 | } |
---|
| 3137 | void G4GMocrenIO::addOneEvent() { |
---|
| 3138 | kNumberOfEvents++; |
---|
| 3139 | } |
---|
| 3140 | |
---|
| 3141 | // set/get pointer the modality image data |
---|
| 3142 | void G4GMocrenIO::setPointerToModalityData(unsigned int & _pointer) { |
---|
| 3143 | kPointerToModalityData = _pointer; |
---|
| 3144 | } |
---|
| 3145 | unsigned int G4GMocrenIO::getPointerToModalityData() { |
---|
| 3146 | return kPointerToModalityData; |
---|
| 3147 | } |
---|
| 3148 | // set/get pointer the dose distribution image data |
---|
| 3149 | void G4GMocrenIO::addPointerToDoseDistData(unsigned int & _pointer) { |
---|
| 3150 | kPointerToDoseDistData.push_back(_pointer); |
---|
| 3151 | } |
---|
| 3152 | unsigned int G4GMocrenIO::getPointerToDoseDistData(int _elem) { |
---|
| 3153 | if(kPointerToDoseDistData.size() == 0 || |
---|
| 3154 | kPointerToDoseDistData.size() < (size_t)_elem) |
---|
| 3155 | return 0; |
---|
| 3156 | else |
---|
| 3157 | return kPointerToDoseDistData[_elem]; |
---|
| 3158 | } |
---|
| 3159 | |
---|
| 3160 | // set/get pointer the ROI image data |
---|
| 3161 | void G4GMocrenIO::setPointerToROIData(unsigned int & _pointer) { |
---|
| 3162 | kPointerToROIData = _pointer; |
---|
| 3163 | } |
---|
| 3164 | unsigned int G4GMocrenIO::getPointerToROIData() { |
---|
| 3165 | return kPointerToROIData; |
---|
| 3166 | } |
---|
| 3167 | // set/get pointer the track data |
---|
| 3168 | void G4GMocrenIO::setPointerToTrackData(unsigned int & _pointer) { |
---|
| 3169 | kPointerToTrackData = _pointer; |
---|
| 3170 | } |
---|
| 3171 | unsigned int G4GMocrenIO::getPointerToTrackData() { |
---|
| 3172 | return kPointerToTrackData; |
---|
| 3173 | } |
---|
| 3174 | |
---|
| 3175 | // calculate pointers for version 4 |
---|
| 3176 | void G4GMocrenIO::calcPointers4() { |
---|
| 3177 | |
---|
| 3178 | // pointer to modality data |
---|
| 3179 | unsigned int pointer = 1070; // up to "pointer to the detector data" except for "pointer to the dose dist data" |
---|
| 3180 | int nDoseDist = getNumDoseDist(); |
---|
| 3181 | pointer += nDoseDist*4; |
---|
| 3182 | |
---|
| 3183 | setPointerToModalityData(pointer); |
---|
| 3184 | |
---|
| 3185 | // pointer to dose data |
---|
| 3186 | // ct-density map for modality data |
---|
| 3187 | int msize[3]; |
---|
| 3188 | getModalityImageSize(msize); |
---|
| 3189 | short mminmax[2]; |
---|
| 3190 | getModalityImageMinMax(mminmax); |
---|
| 3191 | int pmsize = 2*msize[0]*msize[1]*msize[2]; |
---|
| 3192 | int pmmap = 4*(mminmax[1] - mminmax[0] + 1); |
---|
| 3193 | pointer += 32 + pmsize + pmmap; |
---|
| 3194 | // |
---|
| 3195 | kPointerToDoseDistData.clear(); |
---|
| 3196 | if(nDoseDist == 0) { |
---|
| 3197 | unsigned int pointer0 = 0; |
---|
| 3198 | addPointerToDoseDistData(pointer0); |
---|
| 3199 | } |
---|
| 3200 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 3201 | addPointerToDoseDistData(pointer); |
---|
| 3202 | int dsize[3]; |
---|
| 3203 | getDoseDistSize(dsize); |
---|
| 3204 | pointer += 44 + dsize[0]*dsize[1]*dsize[2]*2 + 80; |
---|
| 3205 | } |
---|
| 3206 | |
---|
| 3207 | // pointer to roi data |
---|
| 3208 | if(!isROIEmpty()) { |
---|
| 3209 | setPointerToROIData(pointer); |
---|
| 3210 | |
---|
| 3211 | int rsize[3]; |
---|
| 3212 | getROISize(rsize); |
---|
| 3213 | int prsize = 2*rsize[0]*rsize[1]*rsize[2]; |
---|
| 3214 | pointer += 20 + prsize + 12; |
---|
| 3215 | } else { |
---|
| 3216 | unsigned int pointer0 = 0; |
---|
| 3217 | setPointerToROIData(pointer0); |
---|
| 3218 | } |
---|
| 3219 | |
---|
| 3220 | // pointer to track data |
---|
| 3221 | int ntrk = kTracks.size(); |
---|
| 3222 | if(ntrk != 0) { |
---|
| 3223 | setPointerToTrackData(pointer); |
---|
| 3224 | |
---|
| 3225 | pointer += 4; // # of tracks |
---|
| 3226 | for(int nt = 0; nt < ntrk; nt++) { |
---|
| 3227 | int nsteps = kTracks[nt].getNumberOfSteps(); |
---|
| 3228 | pointer += 4 + 3 + nsteps*(4*6); // # of steps + color + steps(float*6) |
---|
| 3229 | } |
---|
| 3230 | } else { |
---|
| 3231 | unsigned int pointer0 = 0; |
---|
| 3232 | setPointerToTrackData(pointer0); |
---|
| 3233 | } |
---|
[1347] | 3234 | if(kVerbose > 0) G4cout << " pointer to the track data :" |
---|
| 3235 | << kPointerToTrackData << G4endl; |
---|
[1142] | 3236 | |
---|
| 3237 | // pointer to detector data |
---|
| 3238 | int ndet = kDetectors.size(); |
---|
| 3239 | if(ndet != 0) { |
---|
| 3240 | kPointerToDetectorData = pointer; |
---|
| 3241 | } else { |
---|
| 3242 | kPointerToDetectorData = 0; |
---|
| 3243 | } |
---|
[1347] | 3244 | if(kVerbose > 0) G4cout << " pointer to the detector data :" |
---|
| 3245 | << kPointerToDetectorData << G4endl; |
---|
[1142] | 3246 | |
---|
| 3247 | } |
---|
| 3248 | |
---|
| 3249 | // calculate pointers for ver.3 |
---|
| 3250 | void G4GMocrenIO::calcPointers3() { |
---|
| 3251 | |
---|
| 3252 | // pointer to modality data |
---|
| 3253 | unsigned int pointer = 1066; // up to "pointer to the track data" except for "pointer to the dose dist data" |
---|
| 3254 | int nDoseDist = getNumDoseDist(); |
---|
| 3255 | pointer += nDoseDist*4; |
---|
| 3256 | |
---|
| 3257 | setPointerToModalityData(pointer); |
---|
| 3258 | |
---|
| 3259 | // pointer to dose data |
---|
| 3260 | // ct-density map for modality data |
---|
| 3261 | int msize[3]; |
---|
| 3262 | getModalityImageSize(msize); |
---|
| 3263 | short mminmax[2]; |
---|
| 3264 | getModalityImageMinMax(mminmax); |
---|
| 3265 | int pmsize = 2*msize[0]*msize[1]*msize[2]; |
---|
| 3266 | int pmmap = 4*(mminmax[1] - mminmax[0] + 1); |
---|
| 3267 | pointer += 32 + pmsize + pmmap; |
---|
| 3268 | // |
---|
| 3269 | kPointerToDoseDistData.clear(); |
---|
| 3270 | if(nDoseDist == 0) { |
---|
| 3271 | unsigned int pointer0 = 0; |
---|
| 3272 | addPointerToDoseDistData(pointer0); |
---|
| 3273 | } |
---|
| 3274 | for(int ndose = 0; ndose < nDoseDist; ndose++) { |
---|
| 3275 | addPointerToDoseDistData(pointer); |
---|
| 3276 | int dsize[3]; |
---|
| 3277 | getDoseDistSize(dsize); |
---|
| 3278 | pointer += 44 + dsize[0]*dsize[1]*dsize[2]*2; |
---|
| 3279 | } |
---|
| 3280 | |
---|
| 3281 | // pointer to roi data |
---|
| 3282 | if(!isROIEmpty()) { |
---|
| 3283 | setPointerToROIData(pointer); |
---|
| 3284 | |
---|
| 3285 | int rsize[3]; |
---|
| 3286 | getROISize(rsize); |
---|
| 3287 | int prsize = 2*rsize[0]*rsize[1]*rsize[2]; |
---|
| 3288 | pointer += 20 + prsize + 12; |
---|
| 3289 | } else { |
---|
| 3290 | unsigned int pointer0 = 0; |
---|
| 3291 | setPointerToROIData(pointer0); |
---|
| 3292 | } |
---|
| 3293 | |
---|
| 3294 | // |
---|
| 3295 | if(getNumTracks() != 0) |
---|
| 3296 | setPointerToTrackData(pointer); |
---|
| 3297 | else { |
---|
| 3298 | unsigned int pointer0 = 0; |
---|
| 3299 | setPointerToTrackData(pointer0); |
---|
| 3300 | } |
---|
| 3301 | |
---|
| 3302 | } |
---|
| 3303 | |
---|
| 3304 | // calculate pointers for ver.2 |
---|
| 3305 | void G4GMocrenIO::calcPointers2() { |
---|
| 3306 | |
---|
| 3307 | // pointer to modality data |
---|
| 3308 | unsigned int pointer = 65; |
---|
| 3309 | setPointerToModalityData(pointer); |
---|
| 3310 | |
---|
| 3311 | // pointer to dose data |
---|
| 3312 | int msize[3]; |
---|
| 3313 | getModalityImageSize(msize); |
---|
| 3314 | short mminmax[2]; |
---|
| 3315 | getModalityImageMinMax(mminmax); |
---|
| 3316 | int pmsize = 2*msize[0]*msize[1]*msize[2]; |
---|
| 3317 | int pmmap = 4*(mminmax[1] - mminmax[0] + 1); |
---|
| 3318 | pointer += 20 + pmsize + pmmap; |
---|
| 3319 | int dsize[3]; |
---|
| 3320 | getDoseDistSize(dsize); |
---|
| 3321 | kPointerToDoseDistData.clear(); |
---|
| 3322 | if(dsize[0] != 0) { |
---|
| 3323 | kPointerToDoseDistData.push_back(pointer); |
---|
| 3324 | |
---|
| 3325 | int pdsize = 2*dsize[0]*dsize[1]*dsize[2]; |
---|
| 3326 | pointer += 20 + pdsize + 12; |
---|
| 3327 | } else { |
---|
| 3328 | unsigned int pointer0 = 0; |
---|
| 3329 | kPointerToDoseDistData.push_back(pointer0); |
---|
| 3330 | } |
---|
| 3331 | |
---|
| 3332 | // pointer to roi data |
---|
| 3333 | if(!isROIEmpty()) { |
---|
| 3334 | int rsize[3]; |
---|
| 3335 | getROISize(rsize); |
---|
| 3336 | setPointerToROIData(pointer); |
---|
| 3337 | int prsize = 2*rsize[0]*rsize[1]*rsize[2]; |
---|
| 3338 | pointer += 20 + prsize + 12; |
---|
| 3339 | |
---|
| 3340 | } else { |
---|
| 3341 | unsigned int pointer0 = 0; |
---|
| 3342 | setPointerToROIData(pointer0); |
---|
| 3343 | } |
---|
| 3344 | |
---|
| 3345 | // |
---|
| 3346 | if(getNumTracks() != 0) |
---|
| 3347 | setPointerToTrackData(pointer); |
---|
| 3348 | else { |
---|
| 3349 | unsigned int pointer0 = 0; |
---|
| 3350 | setPointerToTrackData(pointer0); |
---|
| 3351 | } |
---|
| 3352 | |
---|
| 3353 | } |
---|
| 3354 | |
---|
| 3355 | |
---|
| 3356 | //----- Modality image -----// |
---|
| 3357 | void G4GMocrenIO::getModalityImageSize(int _size[3]) { |
---|
| 3358 | |
---|
| 3359 | kModality.getSize(_size); |
---|
| 3360 | } |
---|
| 3361 | void G4GMocrenIO::setModalityImageSize(int _size[3]) { |
---|
| 3362 | |
---|
| 3363 | kModality.setSize(_size); |
---|
| 3364 | } |
---|
| 3365 | |
---|
| 3366 | // get & set the modality image size |
---|
| 3367 | void G4GMocrenIO::setModalityImageScale(double & _scale) { |
---|
| 3368 | |
---|
| 3369 | kModality.setScale(_scale); |
---|
| 3370 | } |
---|
| 3371 | double G4GMocrenIO::getModalityImageScale() { |
---|
| 3372 | |
---|
| 3373 | return kModality.getScale(); |
---|
| 3374 | } |
---|
| 3375 | |
---|
| 3376 | // set the modality image in CT |
---|
| 3377 | void G4GMocrenIO::setModalityImage(short * _image) { |
---|
| 3378 | |
---|
| 3379 | kModality.addImage(_image); |
---|
| 3380 | } |
---|
| 3381 | short * G4GMocrenIO::getModalityImage(int _z) { |
---|
| 3382 | |
---|
| 3383 | return kModality.getImage(_z); |
---|
| 3384 | } |
---|
[1228] | 3385 | void G4GMocrenIO::clearModalityImage() { |
---|
| 3386 | |
---|
| 3387 | kModality.clearImage(); |
---|
| 3388 | } |
---|
[1142] | 3389 | // set/get the modality image density map |
---|
| 3390 | void G4GMocrenIO::setModalityImageDensityMap(std::vector<float> & _map) { |
---|
| 3391 | kModalityImageDensityMap = _map; |
---|
| 3392 | } |
---|
| 3393 | std::vector<float> & G4GMocrenIO::getModalityImageDensityMap() { |
---|
| 3394 | return kModalityImageDensityMap; |
---|
| 3395 | } |
---|
| 3396 | // set the modality image min./max. |
---|
| 3397 | void G4GMocrenIO::setModalityImageMinMax(short _minmax[2]) { |
---|
| 3398 | |
---|
| 3399 | kModality.setMinMax(_minmax); |
---|
| 3400 | } |
---|
| 3401 | // get the modality image min./max. |
---|
| 3402 | void G4GMocrenIO::getModalityImageMinMax(short _minmax[2]) { |
---|
| 3403 | |
---|
| 3404 | short minmax[2]; |
---|
| 3405 | kModality.getMinMax(minmax); |
---|
| 3406 | for(int i = 0; i < 2; i++) _minmax[i] = minmax[i]; |
---|
| 3407 | } |
---|
| 3408 | short G4GMocrenIO::getModalityImageMax() { |
---|
| 3409 | |
---|
| 3410 | short minmax[2]; |
---|
| 3411 | kModality.getMinMax(minmax); |
---|
| 3412 | return minmax[1]; |
---|
| 3413 | } |
---|
| 3414 | short G4GMocrenIO::getModalityImageMin() { |
---|
| 3415 | |
---|
| 3416 | short minmax[2]; |
---|
| 3417 | kModality.getMinMax(minmax); |
---|
| 3418 | return minmax[0]; |
---|
| 3419 | } |
---|
| 3420 | // set/get position of the modality image center |
---|
| 3421 | void G4GMocrenIO::setModalityCenterPosition(float _center[3]) { |
---|
| 3422 | |
---|
| 3423 | kModality.setCenterPosition(_center); |
---|
| 3424 | } |
---|
| 3425 | void G4GMocrenIO::getModalityCenterPosition(float _center[3]) { |
---|
| 3426 | |
---|
| 3427 | if(isROIEmpty()) |
---|
| 3428 | for(int i = 0; i < 3; i++) _center[i] = 0; |
---|
| 3429 | else |
---|
| 3430 | kModality.getCenterPosition(_center); |
---|
| 3431 | } |
---|
| 3432 | // get & set the modality image unit |
---|
| 3433 | std::string G4GMocrenIO::getModalityImageUnit() { |
---|
| 3434 | return kModalityUnit; |
---|
| 3435 | } |
---|
| 3436 | void G4GMocrenIO::setModalityImageUnit(std::string & _unit) { |
---|
| 3437 | kModalityUnit = _unit; |
---|
| 3438 | } |
---|
| 3439 | // |
---|
| 3440 | short G4GMocrenIO::convertDensityToHU(float & _dens) { |
---|
| 3441 | short rval = -1024; // default: air |
---|
| 3442 | int nmap = (int)kModalityImageDensityMap.size(); |
---|
| 3443 | if(nmap != 0) { |
---|
| 3444 | short minmax[2]; |
---|
| 3445 | kModality.getMinMax(minmax); |
---|
| 3446 | rval = minmax[1]; |
---|
| 3447 | for(int i = 0; i < nmap; i++) { |
---|
[1347] | 3448 | //G4cout << kModalityImageDensityMap[i] << G4endl; |
---|
[1142] | 3449 | if(_dens <= kModalityImageDensityMap[i]) { |
---|
| 3450 | rval = i + minmax[0]; |
---|
| 3451 | break; |
---|
| 3452 | } |
---|
| 3453 | } |
---|
| 3454 | } |
---|
| 3455 | return rval; |
---|
| 3456 | } |
---|
| 3457 | |
---|
| 3458 | |
---|
| 3459 | //----- Dose distribution -----// |
---|
| 3460 | // |
---|
| 3461 | void G4GMocrenIO::newDoseDist() { |
---|
| 3462 | GMocrenDataPrimitive<double> doseData; |
---|
| 3463 | kDose.push_back(doseData); |
---|
| 3464 | } |
---|
| 3465 | int G4GMocrenIO::getNumDoseDist() { |
---|
| 3466 | return (int)kDose.size(); |
---|
| 3467 | } |
---|
| 3468 | |
---|
| 3469 | // get & set the dose distribution unit |
---|
| 3470 | std::string G4GMocrenIO::getDoseDistUnit(int _num) { |
---|
| 3471 | // to avoid a warning in the compile process |
---|
| 3472 | int dummynum; |
---|
| 3473 | dummynum = _num; |
---|
| 3474 | |
---|
| 3475 | return kDoseUnit; |
---|
| 3476 | } |
---|
| 3477 | void G4GMocrenIO::setDoseDistUnit(std::string & _unit, int _num) { |
---|
| 3478 | // to avoid a warning in the compile process |
---|
| 3479 | int dummynum; |
---|
| 3480 | dummynum = _num; |
---|
| 3481 | |
---|
| 3482 | //char unit[13]; |
---|
| 3483 | //std::strncpy(unit, _unit.c_str(), 12); |
---|
| 3484 | //doseUnit = unit; |
---|
| 3485 | kDoseUnit = _unit; |
---|
| 3486 | } |
---|
| 3487 | // |
---|
| 3488 | void G4GMocrenIO::getDoseDistSize(int _size[3], int _num) { |
---|
| 3489 | if(isDoseEmpty()) |
---|
| 3490 | for(int i = 0; i < 3; i++) _size[i] = 0; |
---|
| 3491 | else |
---|
| 3492 | kDose[_num].getSize(_size); |
---|
| 3493 | } |
---|
| 3494 | void G4GMocrenIO::setDoseDistSize(int _size[3], int _num) { |
---|
| 3495 | |
---|
| 3496 | kDose[_num].setSize(_size); |
---|
| 3497 | |
---|
| 3498 | //resetDose(); |
---|
| 3499 | } |
---|
| 3500 | |
---|
| 3501 | void G4GMocrenIO::setDoseDistMinMax(short _minmax[2], int _num) { |
---|
| 3502 | |
---|
| 3503 | double minmax[2]; |
---|
| 3504 | double scale = kDose[_num].getScale(); |
---|
| 3505 | for(int i = 0; i < 2; i++) minmax[i] = (double)_minmax[i]*scale; |
---|
| 3506 | kDose[_num].setMinMax(minmax); |
---|
| 3507 | } |
---|
| 3508 | void G4GMocrenIO::getDoseDistMinMax(short _minmax[2], int _num) { |
---|
| 3509 | |
---|
| 3510 | if(isDoseEmpty()) |
---|
| 3511 | for(int i = 0; i < 2; i++) _minmax[i] = 0; |
---|
| 3512 | else { |
---|
| 3513 | double minmax[2]; |
---|
| 3514 | kDose[_num].getMinMax(minmax); |
---|
| 3515 | double scale = kDose[_num].getScale(); |
---|
| 3516 | for(int i = 0; i < 2; i++) _minmax[i] = (short)(minmax[i]/scale+0.5); |
---|
| 3517 | } |
---|
| 3518 | } |
---|
| 3519 | void G4GMocrenIO::setDoseDistMinMax(double _minmax[2], int _num) { |
---|
| 3520 | |
---|
| 3521 | kDose[_num].setMinMax(_minmax); |
---|
| 3522 | } |
---|
| 3523 | void G4GMocrenIO::getDoseDistMinMax(double _minmax[2], int _num) { |
---|
| 3524 | |
---|
| 3525 | if(isDoseEmpty()) |
---|
| 3526 | for(int i = 0; i < 2; i++) _minmax[i] = 0.; |
---|
| 3527 | else |
---|
| 3528 | kDose[_num].getMinMax(_minmax); |
---|
| 3529 | } |
---|
| 3530 | |
---|
| 3531 | // get & set the dose distribution image scale |
---|
| 3532 | void G4GMocrenIO::setDoseDistScale(double & _scale, int _num) { |
---|
| 3533 | |
---|
| 3534 | kDose[_num].setScale(_scale); |
---|
| 3535 | } |
---|
| 3536 | double G4GMocrenIO::getDoseDistScale(int _num) { |
---|
| 3537 | |
---|
| 3538 | if(isDoseEmpty()) |
---|
| 3539 | return 0.; |
---|
| 3540 | else |
---|
| 3541 | return kDose[_num].getScale(); |
---|
| 3542 | } |
---|
| 3543 | |
---|
| 3544 | /* |
---|
| 3545 | void G4GMocrenIO::initializeShortDoseDist() { |
---|
| 3546 | ; |
---|
| 3547 | } |
---|
| 3548 | void G4GMocrenIO::finalizeShortDoseDist() { |
---|
| 3549 | ; |
---|
| 3550 | } |
---|
| 3551 | */ |
---|
| 3552 | // set the dose distribution image |
---|
| 3553 | void G4GMocrenIO::setShortDoseDist(short * _image, int _num) { |
---|
| 3554 | |
---|
| 3555 | int size[3]; |
---|
| 3556 | kDose[_num].getSize(size); |
---|
| 3557 | int dsize = size[0]*size[1]; |
---|
| 3558 | double * ddata = new double[dsize]; |
---|
| 3559 | double scale = kDose[_num].getScale(); |
---|
| 3560 | double minmax[2]; |
---|
| 3561 | kDose[_num].getMinMax(minmax); |
---|
| 3562 | for(int xy = 0; xy < dsize; xy++) { |
---|
| 3563 | ddata[xy] = _image[xy]*scale; |
---|
| 3564 | if(ddata[xy] < minmax[0]) minmax[0] = ddata[xy]; |
---|
| 3565 | if(ddata[xy] > minmax[1]) minmax[1] = ddata[xy]; |
---|
| 3566 | } |
---|
| 3567 | kDose[_num].addImage(ddata); |
---|
| 3568 | |
---|
| 3569 | // set min./max. |
---|
| 3570 | kDose[_num].setMinMax(minmax); |
---|
| 3571 | } |
---|
| 3572 | void G4GMocrenIO::getShortDoseDist(short * _data, int _z, int _num) { |
---|
| 3573 | |
---|
| 3574 | if(_data == NULL) { |
---|
[1347] | 3575 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 3576 | G4cout << "In G4GMocrenIO::getShortDoseDist(), " |
---|
| 3577 | << "first argument is NULL pointer. " |
---|
| 3578 | << "The argument must be allocated array." |
---|
| 3579 | << G4endl; |
---|
[1142] | 3580 | std::exit(-1); |
---|
| 3581 | } |
---|
| 3582 | |
---|
| 3583 | int size[3]; |
---|
| 3584 | kDose[_num].getSize(size); |
---|
| 3585 | //short * shdata = new short[size[0]*size[1]]; |
---|
| 3586 | double * ddata = kDose[_num].getImage(_z); |
---|
| 3587 | double scale = kDose[_num].getScale(); |
---|
| 3588 | for(int xy = 0; xy < size[0]*size[1]; xy++) { |
---|
| 3589 | _data[xy] = (short)(ddata[xy]/scale+0.5); //there is never negative value |
---|
| 3590 | } |
---|
| 3591 | } |
---|
| 3592 | void G4GMocrenIO::getShortDoseDistMinMax(short _minmax[2], int _num) { |
---|
| 3593 | double scale = kDose[_num].getScale(); |
---|
| 3594 | double minmax[2]; |
---|
| 3595 | kDose[_num].getMinMax(minmax); |
---|
| 3596 | for(int i = 0; i < 2; i++) |
---|
| 3597 | _minmax[i] = (short)(minmax[i]/scale+0.5); |
---|
| 3598 | } |
---|
| 3599 | // |
---|
| 3600 | void G4GMocrenIO::setDoseDist(double * _image, int _num) { |
---|
| 3601 | |
---|
| 3602 | kDose[_num].addImage(_image); |
---|
| 3603 | } |
---|
| 3604 | double * G4GMocrenIO::getDoseDist(int _z, int _num) { |
---|
| 3605 | |
---|
| 3606 | double * image; |
---|
| 3607 | if(isDoseEmpty()) { |
---|
| 3608 | image = 0; |
---|
| 3609 | } else { |
---|
| 3610 | image = kDose[_num].getImage(_z); |
---|
| 3611 | } |
---|
| 3612 | return image; |
---|
| 3613 | } |
---|
| 3614 | /* |
---|
| 3615 | void G4GMocrenIO::getDoseDist(double * & _image, int _z, int _num) { |
---|
| 3616 | |
---|
[1347] | 3617 | G4cout << " <" << (void*)_image << "> "; |
---|
[1142] | 3618 | if(isDoseEmpty()) { |
---|
| 3619 | _image = 0; |
---|
| 3620 | } else { |
---|
| 3621 | _image = kDose[_num].getImage(_z); |
---|
[1347] | 3622 | G4cout << " <" << (void*)_image << "> "; |
---|
| 3623 | G4cout << _image[100] << " "; |
---|
[1142] | 3624 | } |
---|
| 3625 | } |
---|
| 3626 | */ |
---|
| 3627 | bool G4GMocrenIO::addDoseDist(std::vector<double *> & _image, int _num) { |
---|
| 3628 | |
---|
| 3629 | int size[3]; |
---|
| 3630 | getDoseDistSize(size, _num); |
---|
| 3631 | std::vector<double *> dosedist = kDose[_num].getImage(); |
---|
| 3632 | |
---|
| 3633 | int nimg = size[0]*size[1]; |
---|
| 3634 | for(int z = 0; z < size[2]; z++) { |
---|
| 3635 | for(int xy = 0; xy < nimg; xy++) { |
---|
| 3636 | dosedist[z][xy] += _image[z][xy]; |
---|
| 3637 | } |
---|
| 3638 | } |
---|
| 3639 | |
---|
| 3640 | return true; |
---|
| 3641 | } |
---|
| 3642 | //void setDoseDistDensityMap(float * _map) {doseImageDensityMap = _map;}; |
---|
| 3643 | // set the dose distribution image displacement |
---|
| 3644 | void G4GMocrenIO::setDoseDistCenterPosition(float _center[3], int _num) { |
---|
| 3645 | |
---|
| 3646 | kDose[_num].setCenterPosition(_center); |
---|
| 3647 | } |
---|
| 3648 | void G4GMocrenIO::getDoseDistCenterPosition(float _center[3], int _num) { |
---|
| 3649 | |
---|
| 3650 | if(isDoseEmpty()) |
---|
| 3651 | for(int i = 0; i < 3; i++) _center[i] = 0; |
---|
| 3652 | else |
---|
| 3653 | kDose[_num].getCenterPosition(_center); |
---|
| 3654 | } |
---|
| 3655 | // set & get name of dose distribution |
---|
| 3656 | void G4GMocrenIO::setDoseDistName(std::string _name, int _num) { |
---|
| 3657 | |
---|
| 3658 | kDose[_num].setName(_name); |
---|
| 3659 | } |
---|
| 3660 | std::string G4GMocrenIO::getDoseDistName(int _num) { |
---|
| 3661 | |
---|
| 3662 | std::string name; |
---|
| 3663 | if(isDoseEmpty()) |
---|
| 3664 | return name; |
---|
| 3665 | else |
---|
| 3666 | return kDose[_num].getName(); |
---|
| 3667 | } |
---|
| 3668 | // copy dose distributions |
---|
| 3669 | void G4GMocrenIO::copyDoseDist(std::vector<class GMocrenDataPrimitive<double> > & _dose) { |
---|
| 3670 | std::vector<class GMocrenDataPrimitive<double> >::iterator itr; |
---|
| 3671 | for(itr = kDose.begin(); itr != kDose.end(); itr++) { |
---|
| 3672 | _dose.push_back(*itr); |
---|
| 3673 | } |
---|
| 3674 | } |
---|
| 3675 | // merge two dose distributions |
---|
| 3676 | bool G4GMocrenIO::mergeDoseDist(std::vector<class GMocrenDataPrimitive<double> > & _dose) { |
---|
| 3677 | if(kDose.size() != _dose.size()) { |
---|
[1347] | 3678 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) { |
---|
| 3679 | G4cout << "G4GMocrenIO::mergeDoseDist() : Error" << G4endl; |
---|
| 3680 | G4cout << " Unable to merge the dose distributions,"<< G4endl; |
---|
| 3681 | G4cout << " because of different size of dose maps."<< G4endl; |
---|
| 3682 | } |
---|
[1142] | 3683 | return false; |
---|
| 3684 | } |
---|
| 3685 | |
---|
| 3686 | int num = kDose.size(); |
---|
| 3687 | std::vector<class GMocrenDataPrimitive<double> >::iterator itr1 = kDose.begin(); |
---|
| 3688 | std::vector<class GMocrenDataPrimitive<double> >::iterator itr2 = _dose.begin(); |
---|
| 3689 | for(int i = 0; i < num; i++, itr1++, itr2++) { |
---|
[1347] | 3690 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 3691 | if(kVerbose > 0) |
---|
| 3692 | G4cout << "merged dose distribution [" << i << "]" << G4endl; |
---|
[1142] | 3693 | *itr1 += *itr2; |
---|
| 3694 | } |
---|
| 3695 | |
---|
| 3696 | return true; |
---|
| 3697 | } |
---|
| 3698 | // |
---|
| 3699 | void G4GMocrenIO::clearDoseDistAll() { |
---|
| 3700 | |
---|
| 3701 | if(!isDoseEmpty()) { |
---|
| 3702 | for(int i = 0; i < getNumDoseDist(); i++) { |
---|
| 3703 | kDose[i].clear(); |
---|
| 3704 | } |
---|
| 3705 | kDose.clear(); |
---|
| 3706 | } |
---|
| 3707 | } |
---|
| 3708 | // |
---|
| 3709 | bool G4GMocrenIO::isDoseEmpty() { |
---|
| 3710 | if(kDose.empty()) { |
---|
[1347] | 3711 | //if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 3712 | // G4cout << "!!! dose distribution data is empty." << G4endl; |
---|
[1142] | 3713 | return true; |
---|
| 3714 | } else { |
---|
| 3715 | return false; |
---|
| 3716 | } |
---|
| 3717 | } |
---|
| 3718 | |
---|
| 3719 | // |
---|
| 3720 | void G4GMocrenIO::calcDoseDistScale() { |
---|
| 3721 | |
---|
| 3722 | double scale; |
---|
| 3723 | double minmax[2]; |
---|
| 3724 | |
---|
| 3725 | for(int i = 0; i < (int)kDose.size(); i++) { |
---|
| 3726 | kDose[i].getMinMax(minmax); |
---|
| 3727 | scale = minmax[1]/DOSERANGE; |
---|
| 3728 | kDose[i].setScale(scale); |
---|
| 3729 | } |
---|
| 3730 | } |
---|
| 3731 | |
---|
| 3732 | |
---|
| 3733 | //----- RoI -----// |
---|
| 3734 | |
---|
| 3735 | // add one RoI data |
---|
| 3736 | void G4GMocrenIO::newROI() { |
---|
| 3737 | GMocrenDataPrimitive<short> roiData; |
---|
| 3738 | kRoi.push_back(roiData); |
---|
| 3739 | } |
---|
| 3740 | int G4GMocrenIO::getNumROI() { |
---|
| 3741 | return (int)kRoi.size(); |
---|
| 3742 | } |
---|
| 3743 | |
---|
| 3744 | // set/get the ROI image scale |
---|
| 3745 | void G4GMocrenIO::setROIScale(double & _scale, int _num) { |
---|
| 3746 | |
---|
| 3747 | kRoi[_num].setScale(_scale); |
---|
| 3748 | } |
---|
| 3749 | double G4GMocrenIO::getROIScale(int _num) { |
---|
| 3750 | |
---|
| 3751 | if(isROIEmpty()) |
---|
| 3752 | return 0.; |
---|
| 3753 | else |
---|
| 3754 | return kRoi[_num].getScale(); |
---|
| 3755 | } |
---|
| 3756 | // set the ROI image |
---|
| 3757 | void G4GMocrenIO::setROI(short * _image, int _num) { |
---|
| 3758 | |
---|
| 3759 | kRoi[_num].addImage(_image); |
---|
| 3760 | } |
---|
| 3761 | short * G4GMocrenIO::getROI(int _z, int _num) { |
---|
| 3762 | |
---|
| 3763 | if(isROIEmpty()) |
---|
| 3764 | return 0; |
---|
| 3765 | else |
---|
| 3766 | return kRoi[_num].getImage(_z); |
---|
| 3767 | } |
---|
| 3768 | // set/get the ROI image size |
---|
| 3769 | void G4GMocrenIO::setROISize(int _size[3], int _num) { |
---|
| 3770 | |
---|
| 3771 | return kRoi[_num].setSize(_size); |
---|
| 3772 | } |
---|
| 3773 | void G4GMocrenIO::getROISize(int _size[3], int _num) { |
---|
| 3774 | |
---|
| 3775 | if(isROIEmpty()) |
---|
| 3776 | for(int i = 0; i < 3; i++) _size[i] = 0; |
---|
| 3777 | else |
---|
| 3778 | return kRoi[_num].getSize(_size); |
---|
| 3779 | } |
---|
| 3780 | // set/get the ROI image min. and max. |
---|
| 3781 | void G4GMocrenIO::setROIMinMax(short _minmax[2], int _num) { |
---|
| 3782 | |
---|
| 3783 | kRoi[_num].setMinMax(_minmax); |
---|
| 3784 | } |
---|
| 3785 | void G4GMocrenIO::getROIMinMax(short _minmax[2], int _num) { |
---|
| 3786 | |
---|
| 3787 | if(isROIEmpty()) |
---|
| 3788 | for(int i = 0; i < 2; i++) _minmax[i] = 0; |
---|
| 3789 | else |
---|
| 3790 | kRoi[_num].getMinMax(_minmax); |
---|
| 3791 | } |
---|
| 3792 | // set/get the ROI image displacement |
---|
| 3793 | void G4GMocrenIO::setROICenterPosition(float _center[3], int _num) { |
---|
| 3794 | |
---|
| 3795 | kRoi[_num].setCenterPosition(_center); |
---|
| 3796 | } |
---|
| 3797 | void G4GMocrenIO::getROICenterPosition(float _center[3], int _num) { |
---|
| 3798 | |
---|
| 3799 | if(isROIEmpty()) |
---|
| 3800 | for(int i = 0; i < 3; i++) _center[i] = 0; |
---|
| 3801 | else |
---|
| 3802 | kRoi[_num].getCenterPosition(_center); |
---|
| 3803 | } |
---|
| 3804 | // |
---|
| 3805 | void G4GMocrenIO::clearROIAll() { |
---|
| 3806 | |
---|
| 3807 | if(!isROIEmpty()) { |
---|
| 3808 | for(int i = 0; i < getNumROI(); i++) { |
---|
| 3809 | kRoi[i].clear(); |
---|
| 3810 | } |
---|
| 3811 | kRoi.clear(); |
---|
| 3812 | } |
---|
| 3813 | } |
---|
| 3814 | // |
---|
| 3815 | bool G4GMocrenIO::isROIEmpty() { |
---|
| 3816 | if(kRoi.empty()) { |
---|
[1347] | 3817 | //if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 3818 | // G4cout << "!!! ROI data is empty." << G4endl; |
---|
[1142] | 3819 | return true; |
---|
| 3820 | } else { |
---|
| 3821 | return false; |
---|
| 3822 | } |
---|
| 3823 | } |
---|
| 3824 | |
---|
| 3825 | |
---|
| 3826 | |
---|
| 3827 | //----- Track information -----// |
---|
| 3828 | |
---|
| 3829 | int G4GMocrenIO::getNumTracks() { |
---|
| 3830 | return (int)kSteps.size(); |
---|
| 3831 | } |
---|
| 3832 | int G4GMocrenIO::getNumTracks4() { |
---|
| 3833 | return (int)kTracks.size(); |
---|
| 3834 | } |
---|
| 3835 | void G4GMocrenIO::addTrack(float * _tracks) { |
---|
| 3836 | kSteps.push_back(_tracks); |
---|
| 3837 | } |
---|
| 3838 | void G4GMocrenIO::setTracks(std::vector<float *> & _tracks) { |
---|
| 3839 | kSteps = _tracks; |
---|
| 3840 | } |
---|
| 3841 | std::vector<float *> & G4GMocrenIO::getTracks() { |
---|
| 3842 | return kSteps; |
---|
| 3843 | } |
---|
| 3844 | void G4GMocrenIO::addTrackColor(unsigned char * _colors) { |
---|
| 3845 | kStepColors.push_back(_colors); |
---|
| 3846 | } |
---|
| 3847 | void G4GMocrenIO::setTrackColors(std::vector<unsigned char *> & _trackColors) { |
---|
| 3848 | kStepColors = _trackColors; |
---|
| 3849 | } |
---|
| 3850 | std::vector<unsigned char *> & G4GMocrenIO::getTrackColors() { |
---|
| 3851 | return kStepColors; |
---|
| 3852 | } |
---|
| 3853 | void G4GMocrenIO::copyTracks(std::vector<float *> & _tracks, |
---|
| 3854 | std::vector<unsigned char *> & _colors) { |
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| 3855 | std::vector<float *>::iterator titr; |
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| 3856 | for(titr = kSteps.begin(); titr != kSteps.end(); titr++) { |
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| 3857 | float * pts = new float[6]; |
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| 3858 | for(int i = 0; i < 6; i++) { |
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| 3859 | pts[i] = (*titr)[i]; |
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| 3860 | } |
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| 3861 | _tracks.push_back(pts); |
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| 3862 | } |
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| 3863 | |
---|
| 3864 | std::vector<unsigned char *>::iterator citr; |
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| 3865 | for(citr = kStepColors.begin(); citr != kStepColors.end(); citr++) { |
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| 3866 | unsigned char * pts = new unsigned char[3]; |
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| 3867 | for(int i = 0; i < 3; i++) { |
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| 3868 | pts[i] = (*citr)[i]; |
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| 3869 | } |
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| 3870 | _colors.push_back(pts); |
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| 3871 | } |
---|
| 3872 | } |
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| 3873 | void G4GMocrenIO::mergeTracks(std::vector<float *> & _tracks, |
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| 3874 | std::vector<unsigned char *> & _colors) { |
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| 3875 | std::vector<float *>::iterator titr; |
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| 3876 | for(titr = _tracks.begin(); titr != _tracks.end(); titr++) { |
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| 3877 | addTrack(*titr); |
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| 3878 | } |
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| 3879 | |
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| 3880 | std::vector<unsigned char *>::iterator citr; |
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| 3881 | for(citr = _colors.begin(); citr != _colors.end(); citr++) { |
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| 3882 | addTrackColor(*citr); |
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| 3883 | } |
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| 3884 | } |
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| 3885 | void G4GMocrenIO::addTrack(std::vector<float *> & _steps, unsigned char _color[3]) { |
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| 3886 | |
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| 3887 | std::vector<float *>::iterator itr = _steps.begin(); |
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| 3888 | std::vector<struct GMocrenTrack::Step> steps; |
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| 3889 | for(; itr != _steps.end(); itr++) { |
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| 3890 | struct GMocrenTrack::Step step; |
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| 3891 | for(int i = 0; i < 3; i++) { |
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| 3892 | step.startPoint[i] = (*itr)[i]; |
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| 3893 | step.endPoint[i] = (*itr)[i+3]; |
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| 3894 | } |
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| 3895 | steps.push_back(step); |
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| 3896 | } |
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| 3897 | GMocrenTrack track; |
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| 3898 | track.setTrack(steps); |
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| 3899 | track.setColor(_color); |
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| 3900 | kTracks.push_back(track); |
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| 3901 | |
---|
| 3902 | } |
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| 3903 | void G4GMocrenIO::getTrack(int _num, std::vector<float *> & _steps, |
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| 3904 | std::vector<unsigned char *> & _color) { |
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| 3905 | |
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| 3906 | if(_num > (int)kTracks.size()) { |
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[1347] | 3907 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
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| 3908 | G4cout << "ERROR in getTrack() : " << G4endl; |
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[1142] | 3909 | std::exit(-1); |
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| 3910 | } |
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| 3911 | unsigned char * color = new unsigned char[3]; |
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| 3912 | kTracks[_num].getColor(color); |
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| 3913 | _color.push_back(color); |
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| 3914 | |
---|
| 3915 | // steps |
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| 3916 | int nsteps = kTracks[_num].getNumberOfSteps(); |
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| 3917 | for(int ns = 0; ns < nsteps; ns++) { |
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| 3918 | float * stepPoints = new float[6]; |
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| 3919 | kTracks[_num].getStep(stepPoints[0], stepPoints[1], stepPoints[2], |
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| 3920 | stepPoints[3], stepPoints[4], stepPoints[5], |
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| 3921 | ns); |
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| 3922 | _steps.push_back(stepPoints); |
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| 3923 | } |
---|
| 3924 | } |
---|
| 3925 | |
---|
| 3926 | void G4GMocrenIO::translateTracks(std::vector<float> & _translate) { |
---|
| 3927 | std::vector<class GMocrenTrack>::iterator itr = kTracks.begin(); |
---|
| 3928 | for(; itr != kTracks.end(); itr++) { |
---|
| 3929 | itr->translate(_translate); |
---|
| 3930 | } |
---|
| 3931 | } |
---|
| 3932 | |
---|
| 3933 | |
---|
| 3934 | |
---|
| 3935 | |
---|
| 3936 | //----- Detector information -----// |
---|
| 3937 | int G4GMocrenIO::getNumberOfDetectors() { |
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| 3938 | return (int)kDetectors.size(); |
---|
| 3939 | } |
---|
| 3940 | void G4GMocrenIO::addDetector(std::string & _name, |
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| 3941 | std::vector<float *> & _det, |
---|
| 3942 | unsigned char _color[3]) { |
---|
| 3943 | |
---|
| 3944 | std::vector<float *>::iterator itr = _det.begin(); |
---|
| 3945 | std::vector<struct GMocrenDetector::Edge> edges; |
---|
| 3946 | for(; itr != _det.end(); itr++) { |
---|
| 3947 | struct GMocrenDetector::Edge edge; |
---|
| 3948 | for(int i = 0; i < 3; i++) { |
---|
| 3949 | edge.startPoint[i] = (*itr)[i]; |
---|
| 3950 | edge.endPoint[i] = (*itr)[i+3]; |
---|
| 3951 | } |
---|
| 3952 | edges.push_back(edge); |
---|
| 3953 | } |
---|
| 3954 | GMocrenDetector detector; |
---|
| 3955 | detector.setDetector(edges); |
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| 3956 | detector.setColor(_color); |
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| 3957 | detector.setName(_name); |
---|
| 3958 | kDetectors.push_back(detector); |
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| 3959 | |
---|
| 3960 | } |
---|
| 3961 | |
---|
| 3962 | void G4GMocrenIO::getDetector(int _num, std::vector<float *> & _edges, |
---|
| 3963 | std::vector<unsigned char *> & _color, |
---|
| 3964 | std::string & _detName) { |
---|
| 3965 | |
---|
| 3966 | if(_num > (int)kDetectors.size()) { |
---|
[1347] | 3967 | if (G4VisManager::GetVerbosity() >= G4VisManager::errors) |
---|
| 3968 | G4cout << "ERROR in getDetector() : " << G4endl; |
---|
[1142] | 3969 | std::exit(-1); |
---|
| 3970 | } |
---|
| 3971 | |
---|
| 3972 | _detName = kDetectors[_num].getName(); |
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| 3973 | |
---|
| 3974 | unsigned char * color = new unsigned char[3]; |
---|
| 3975 | kDetectors[_num].getColor(color); |
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| 3976 | _color.push_back(color); |
---|
| 3977 | |
---|
| 3978 | // edges |
---|
| 3979 | int nedges = kDetectors[_num].getNumberOfEdges(); |
---|
| 3980 | for(int ne = 0; ne < nedges; ne++) { |
---|
| 3981 | float * edgePoints = new float[6]; |
---|
| 3982 | kDetectors[_num].getEdge(edgePoints[0], edgePoints[1], edgePoints[2], |
---|
| 3983 | edgePoints[3], edgePoints[4], edgePoints[5], |
---|
| 3984 | ne); |
---|
| 3985 | _edges.push_back(edgePoints); |
---|
| 3986 | } |
---|
| 3987 | } |
---|
| 3988 | |
---|
| 3989 | void G4GMocrenIO::translateDetector(std::vector<float> & _translate) { |
---|
| 3990 | std::vector<class GMocrenDetector>::iterator itr = kDetectors.begin(); |
---|
| 3991 | for(; itr != kDetectors.end(); itr++) { |
---|
| 3992 | itr->translate(_translate); |
---|
| 3993 | } |
---|
| 3994 | } |
---|
| 3995 | |
---|
| 3996 | // endian conversion |
---|
| 3997 | template <typename T> |
---|
| 3998 | void G4GMocrenIO::convertEndian(char * _val, T & _rval) { |
---|
| 3999 | |
---|
| 4000 | if((kLittleEndianOutput && !kLittleEndianInput) || // big endian |
---|
| 4001 | (!kLittleEndianOutput && kLittleEndianInput)) { // little endian |
---|
| 4002 | |
---|
| 4003 | const int SIZE = sizeof(_rval); |
---|
| 4004 | char ctemp; |
---|
| 4005 | for(int i = 0; i < SIZE/2; i++) { |
---|
| 4006 | ctemp = _val[i]; |
---|
| 4007 | _val[i] = _val[SIZE - 1 - i]; |
---|
| 4008 | _val[SIZE - 1 - i] = ctemp; |
---|
| 4009 | } |
---|
| 4010 | } |
---|
| 4011 | _rval = *(T *)_val; |
---|
| 4012 | } |
---|
| 4013 | |
---|
| 4014 | // inversion of byte order |
---|
| 4015 | template <typename T> |
---|
| 4016 | void G4GMocrenIO::invertByteOrder(char * _val, T & _rval) { |
---|
| 4017 | |
---|
| 4018 | const int SIZE = sizeof(_rval); |
---|
| 4019 | //char * cval = new char[SIZE]; |
---|
| 4020 | union { |
---|
| 4021 | char cu[16]; |
---|
| 4022 | T tu; |
---|
| 4023 | } uni; |
---|
| 4024 | for(int i = 0; i < SIZE; i++) { |
---|
| 4025 | uni.cu[i] = _val[SIZE-1-i]; |
---|
| 4026 | //cval[i] = _val[SIZE-i-1]; |
---|
| 4027 | } |
---|
| 4028 | //_rval = *(T *)cval; |
---|
| 4029 | _rval = uni.tu; |
---|
| 4030 | //delete [] cval; |
---|
| 4031 | } |
---|
| 4032 | |
---|
| 4033 | //----- kVerbose information -----// |
---|
| 4034 | void G4GMocrenIO::setVerboseLevel(int _level) { |
---|
| 4035 | kVerbose = _level; |
---|
| 4036 | } |
---|
| 4037 | |
---|