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 		      Geant4 - Brachytherapy example
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                             README
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----> Introduction.                                                     
                                                                       
Brachytherapy example simulates energy deposit in a Phantom filled with 
soft tissue for: 
1) Iridium source (endocavitary brachytherapy).                         
2) Iodium  source (interstitial brachytherapy).                         
3) Leipzig Applicator (superficial brachytherapy).                      
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----> 1.Experimental set-up.                                            

The default source is an Ir-131 source put in the center of the Phantom.
The Phantom is a box (dimension:30cm), it is gridded in 
voxels (1.mm dimension)                                                 
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----> 2.SET-UP 
                                          
 -a standard Geant4 example GNUmakefile is provided                      

setup with:                                                              
G4SYSTEM = linux-g++                                                     

The following environment variables need to be set:                      

G4LEDATA: points to low energy database             

setup for analysis: AIDA 3.2.1, PI 1.3.3 (PI is Obsolete)

Users can download the analysis tools from:  
                                                                        
http://aida.freehep.org/
http://cern.ch/pfeiffer
http://www.cern.ch/PI  (OBSOLETE)
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----> 3.How to run the example.                                         

- batch mode:
  $G4WORKDIR/bin/Linux-g++/Brachy IridiumSourceMacro.mac                
  $G4WORKDIR/bin/Linux-g++/Brachy IodiumSourceMacro.mac       
  $G4WORKDIR/bin/Linux-g++/Brachy LeipzigSourceMacro.mac  
                                                                        
- Interative mode:                                                      
  3) $G4WORKDIR/bin/Linux-g++/Brachy
     The VisualisationMacro.mac is loaded automatically                 

-->possible different configurations for interactive mode:              

1)Ir source:                                                            
idle>/run/beamOn NumberOfEvents      ...and then
idle>exit                                                               

2)Leipzig Applicator:                                                   
idle>/source/switch Leipzig                                           
idle>/run/beamOn NumberOfEvents     ...and then                         
idle> exit
                                                                        
3) Iodium  source:
idle>/source/switch Iodium                                               
idle>/primary/energy Iodium
idle>/run/beamOn NumberOfEvents     ...and then                          
idle>exit
                                                                         
*Before the run you can also change the absorber material of the 
Phantom:                                                                 
idle>/phantom/selectMaterial  materialName
                                                                         
- batch mode: executable Brachy macroFile.mac 
  macros are provided as example: IodiumSourceMacro.mac,
  IridiumSourceMacro.mac, LeipzigSourceMacro.mac                         
  (ex. $G4WORKDIR/bin/Linux-g++/Brachy IodiumSourceMacro.mac)   
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----> 4. Simulation output                                               

if G4ANALYSIS_USE = 1 in the set-up, the output is brachytherapy.hbk      

 It contains:
 1)1Dhistogram with the primary particle energy                          
 2)2Dhistogram with the distribution of energy in the plane 
   (x,z,energy) containing the source (YThickness = 1. mm)   
 3)1Dhistogram with the energy deposit along the X axis in the plane     
   containing the source.
 4)Ntuple with the 3D energy deposit in the Phantom                    
                                                                         
Units:   the energy deposit is in MeV;
         x, y, z in mm for histograms and ntuple                         
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----> 5.Visualisation                                                     

a macro is provided ad example of visualisation:  VisualisationMacro.mac 

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Further information at http://www.ge.infn.it/geant4/examples/index.html
Contact: geant4-advanced-examples@cern.ch