| [507] | 1 | Title: Status of the programs and scripts used for Amas@Nancay analysis at CCIN2P3
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| [519] | 2 | Revision: 14/9/11
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| [507] | 3 | Author: J.E Campagne 22/7/11
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| 4 | ----------------------------
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| 5 |
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| 6 | Intro:
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| 7 | All these tools are located for the while in J.E Campagne private directory, so they are not
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| 8 | yet available to public usage and this note is essentially for information and software tracking.
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| 9 |
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| 10 | -----------------------------------------------------------
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| 11 | Analysis program
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| 12 | ------------------------------------------------------------
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| 13 | o analysis.cc
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| 14 | - perfom
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| 15 | . gain spectra determination + monitoring
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| 16 | . calibration coefficient determination + monitoring
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| 17 | . ON-OFF spectra determination (no RT calibration included)
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| 18 | - Todo
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| 19 | . include RT calibration
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| 20 | - comments
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| [519] | 21 | . ON-OFF part only validate for a single Abell85 run and not in batch mode (preliminary stage)
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| [507] | 22 | . GAIN part should be revalidated according to inPath argument
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| 23 |
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| 24 | -----------------------------------------------------------
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| 25 | Collection of Bourne SHELL script for analysis
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| 26 | ------------------------------------------------------------
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| 27 |
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| 28 | A) Utilitary scripts to follow the DAQ & Analysis progress
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| 29 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 30 | o statusdaq.sh
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| 31 | --------------
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| 32 | - perform
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| 33 | . scan all the /baoradio/data/AmamNancay to look at the directories and and make
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| 34 | a summary of the Data Acquisition
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| 35 |
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| 36 | o statusheader.sh
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| 37 | -----------------
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| 38 | - perform
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| 39 | . scan Irods directories to look at header fits files extraction progress
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| 40 |
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| 41 | o statusgain.sh
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| 42 | ---------------
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| 43 | - perform
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| 44 | . scan Irods directories to look at FINAL gain_* files production progress
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| 45 |
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| 46 | o statuscalib.sh
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| 47 | ----------------
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| 48 | - perform
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| 49 | . scan Irods directories to look at INTERMEDIATE calibcycle files production progress
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| 50 | - Todo
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| 51 | . scan also for FINAL calib_* files progress
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| 52 |
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| 53 | B) Utilitary scripts to send to BQS system high level task
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| 54 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 55 | o submit2bqs-hdrfitsextractor.sh
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| 56 | --------------------------------
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| 57 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 58 | - send the hdrfitsextractor.sh script to BQS system
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| 59 | - Todo list
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| 60 | - TO MIGRATE TO NEW BATCH
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| 61 |
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| 62 | o submit2bqs-scaextractor.sh
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| 63 | --------------------------------
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| 64 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 65 | - send statusdaq if necessary
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| 66 | - send the scaextractor.sh script to BQS system
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| 67 | although this script is called by getscafiles lower level script
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| 68 | - Todo list
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| 69 | - TO MIGRATE TO NEW BATCH
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| 70 |
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| 71 | o submit2qs-gainmaker.sh
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| 72 | -------------------------
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| 73 | - send the gainmaker.sh script to BQS system
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| 74 | - Todo list
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| 75 | - TO MIGRATE TO NEW BATCH
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| 76 |
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| 77 | o submit2qs-calibmaker.sh
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| 78 | --------------------------
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| 79 | - send the calibmaker.sh script to BQS system
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| 80 | - Todo list
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| 81 | - TO MIGRATE TO NEW BATCH
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| 82 |
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| [519] | 83 | o submit2qs-onoffmaker.sh
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| 84 | --------------------------
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| 85 | - send the onoffmaker.sh script to BQS system
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| 86 | - Todo list
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| 87 | - TO MIGRATE TO NEW BATCH
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| 88 |
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| [507] | 89 |
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| 90 | C) High level scripts
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| 91 | ++++++++++++++++++++++
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| 92 | o hdrfitsextractor.sh
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| 93 | ---------------------
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| 94 | - SHOULD BE DONE BEFORE ANYTHING
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| 95 | - perform
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| 96 | . extraction of the header part of the signalXYZ.fits files and
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| 97 | . put the results into Irods
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| 98 | - use
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| 99 | . statusdaq.sh
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| 100 |
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| 101 | o gainmaker.sh
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| 102 | ---------------
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| 103 | - perform
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| 104 | 1) the extraction of signalXYZ.fits files
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| 105 | concerned by the OFF-calibration time window
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| 106 | of the cycle located at the middle of the run
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| 107 | 2) . the analysis of the above fits files to determine the
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| 108 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 109 | . put the results into Irods
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| 110 | - use
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| 111 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 112 | - analysis.cc
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| 113 |
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| 114 | o calibmaker.sh
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| 115 | ---------------
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| 116 | - perfom
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| [519] | 117 | 1) several x-checks to see at which stage of the analysis process we are
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| 118 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 119 | 3) . prepare the analysis of the above fits files
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| 120 | . put calib_* files (monitoring + calibration files) into Irods
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| [507] | 121 | - use
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| 122 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 123 | - analysis.cc
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| 124 |
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| [519] | 125 | o onoffmaker.sh (preliminary)
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| 126 | ----------------------------
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| 127 | - perform
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| 128 | 1) several x-checks to see at which stage of the analysis process we are
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| 129 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 130 | 3) prepare the analysis of the above fits files
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| 131 | 4) put dataRaw_* (raw spectra),
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| 132 | dataBAOCalib_* (after BAO calibration),
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| 133 | dataBAORTCalib_* (after BAO & RT calibration),
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| 134 | diffOnOff_* (ON-OFF spectra)
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| 135 |
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| [507] | 136 | D) Lower level scripts
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| 137 | ++++++++++++++++++++++
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| 138 |
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| 139 | o proc_script.sh
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| 140 | -----------------
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| 141 | - VERY BUSY script
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| 142 | - perform
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| 143 | 1) all the preparation work to send in batch the "specmfib" program
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| 144 | which perform the FFT and median/mean spectra for GAIN, CALIBRATION, ON-OFF task
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| 145 | 2) the script that is sent in batch put the results into Irods
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| 146 | - use
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| 147 | - getscafiles.sh, select.sh, getsignalfiles.sh
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| 148 | - Todo list
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| 149 | - TO MIGRATE TO NEW BATCH
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| 150 |
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| 151 |
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| 152 | o scaextractor.sh
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| 153 | -----------------
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| 154 | - perform
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| 155 | 1) extraction of the scaXYZ file
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| 156 | 2) if the scaXYZ.sum and the scaXYZ.sum.trans files do not exist
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| 157 | . create and put them into Irods
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| 158 | . scaXYZ.sum = summary of the SCA file
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| 159 | . scaXYZ.sum.trans = transformation of the date format of the scaXYZ.sum file
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| 160 | - use
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| 161 | - sca.sh, transdate.sh
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| 162 |
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| 163 | o sca.sh
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| 164 | --------
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| 165 | - perform
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| 166 | . produce the scaXYZ.sum (= summary of the SCA file) from a scaXYZ file
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| 167 |
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| 168 | o transdate.sh
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| 169 | --------------
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| 170 | - perform
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| 171 | . produce the scaXYZ.sum.trans (= transformation of the date format) from the scaXYZ.sum file
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| 172 |
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| 173 | o select.sh
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| 174 | -----------
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| 175 | -perform
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| 176 | . the selection of the signalXYZ.fits files according to the type of task requested
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| 177 | as ON, OFF, CALIBON, CALIBOFF, GAIN
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| 178 |
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| 179 | o getscafiles.sh
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| 180 | ----------------
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| 181 | - perform
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| 182 | . download from Irods the scaXYZ, scaXYZ.sum and scaXYZ.sum.trans files
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| 183 | - use
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| 184 | scaextractor.sh
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| 185 |
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| 186 | o getsignals.sh
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| 187 | ---------------
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| 188 | - perform
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| 189 | . download from Irods the signalXYZ.fits files
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| 190 |
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| 191 |
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| 192 |
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| 193 |
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