[507] | 1 | #!/bin/sh -xvf |
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| 2 | #download SCA file, proceed to introspection, and upload results |
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| 3 | DATE=/bin/date |
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| 4 | GREP=/bin/grep |
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| 5 | AWK=/bin/awk |
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| 6 | ECHO=/bin/echo |
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| 7 | WC=/usr/bin/wc |
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| 8 | CAT=/bin/cat |
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| 9 | PRINTF=/usr/bin/printf |
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| 10 | MKDIR=/bin/mkdir |
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| 11 | RM=/bin/rm |
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| 12 | LS=/bin/ls |
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| 13 | DefaultIFS=$' \t\n' |
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| 14 | IFS=$DefaultIFS |
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| 15 | |
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| 16 | |
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| 17 | #set Irods environment |
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| 18 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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| 19 | |
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| 20 | scriptName="`basename $0`" |
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| 21 | $ECHO "Processing script ${scriptName} at `date`" |
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| 22 | |
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| 23 | #which source to analyse |
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| 24 | sourceRadio=$1 |
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| 25 | |
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| 26 | #Path to public backupable path |
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| 27 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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| 28 | |
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| 29 | #temporary files to synchronize scripts |
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| 30 | tmppublicpath="/sps/baoradio/AmasNancay" |
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| 31 | $LS -l ${tmppublicpath} > /dev/null |
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| 32 | |
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| 33 | |
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| 34 | #Path where the job will do temporary IO |
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| 35 | if [ ${ENVIRONMENT} = "INTERACTIVE" ]; then |
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| 36 | iojobpath="/sps/baoradio/AmasNancay/JEC" |
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| 37 | $MKDIR -p $iojobpath |
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| 38 | elif [ ${ENVIRONMENT} = "BATCH" ] ; then |
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| 39 | iojobpath=${TMPBATCH} |
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| 40 | else |
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| 41 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed" |
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| 42 | touch ${tmppublicpath}/scaextractor.finished |
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| 43 | exit 1 |
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| 44 | fi |
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| 45 | cd ${iojobpath} |
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| 46 | |
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| 47 | |
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| 48 | localpath="${sourceRadio}" |
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| 49 | $MKDIR -p ./${localpath} |
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| 50 | cd ./${localpath} |
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| 51 | |
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| 52 | |
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| 53 | #Path of the utility scripts |
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[510] | 54 | scriptpath="/afs/in2p3.fr/home/c/campagne/private/work/AmasNancay" |
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[507] | 55 | |
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| 56 | |
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| 57 | #get the daq current irod status |
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| 58 | tag=`${DATE} +%F` |
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| 59 | OUT1=${publicpath}/baodaqstatus-${tag}.txt |
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| 60 | |
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| 61 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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| 62 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..." |
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| 63 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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| 64 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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| 65 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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| 66 | # $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/statusdaq.finished" |
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| 67 | # date +%T |
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| 68 | # sleep 30 |
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| 69 | # done |
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| 70 | # $RM ${tmppublicpath}/statusdaq.finished |
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| 71 | $ECHO "FATAL (${scriptName}): ${OUT1} is missing or not readable..." |
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| 72 | touch ${tmppublicpath}/scaextractor.finished |
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| 73 | exit 1 |
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| 74 | fi |
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| 75 | |
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| 76 | if [ ! "<${sourceRadio}>" = "<>" ]; then |
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| 77 | $ECHO "You have selected sourceRadio = $sourceRadio" |
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| 78 | tableau=( `$GREP -i ${sourceRadio} ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` ) |
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| 79 | else |
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| 80 | tableau=( `$CAT ${OUT1} | $AWK'( NF==4 ) { print $2 }'` ) |
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| 81 | fi |
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| 82 | IFS=' |
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| 83 | ' |
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| 84 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 85 | IFS=$DefaultIFS |
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| 86 | |
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| 87 | for i in ${tableau[@]} |
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| 88 | do |
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| 89 | OUT2=./baodir.$$ |
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| 90 | #scrutinize irods directory |
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| 91 | #Nb: we do not care here if ILS returns non unique instance of a file |
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| 92 | ils -l $i 2>&1 | $GREP -i "sca" > ${OUT2} |
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| 93 | $CAT ${OUT2} |
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| 94 | #test if the SCA file has been already processed |
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| 95 | scatrans=`$GREP -i "sca.*\.sum\.trans" ${OUT2} | $AWK '{print $NF}'` |
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| 96 | #test if the file is empty due to previous processing dysfunction |
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| 97 | emptyfile=`$GREP -i "sca.*\.sum\.trans" ${OUT2} | $AWK '{print $4}'` |
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| 98 | # echo "scrutinize directory <$i>: [$nblines] [$scatrans]" |
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| 99 | if [ "<${scatrans}>" = "<>" -o "<${emptyfile}>" = "<0>" ]; then |
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| 100 | $ECHO "$i may be non prepared for analysis..." |
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| 101 | scafile=`$GREP -i "sca[0-9][0-9]*\.[0-9][0-9]*" ${OUT2} | $AWK '{print $NF}'` |
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| 102 | if [ "<${scafile}>" = "<>" ]; then |
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| 103 | $ECHO "WARNING (${scriptName}): Cannot download a SCA file for $i" |
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| 104 | else |
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| 105 | #get sca file |
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| 106 | iget -r -f -v -K ${i}/${scafile} ${iojobpath} |
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| 107 | #extract summary (sum extension) |
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| 108 | $RM -f ${tmppublicpath}/sca.finished |
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| 109 | ${scriptpath}/sca.sh ${scafile} |
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| 110 | while [ ! -e "${tmppublicpath}/sca.finished" ]; do |
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| 111 | $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/sca.finished" |
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| 112 | date +%T |
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| 113 | sleep 30 |
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| 114 | done |
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| 115 | $ECHO "INFO (${scriptName}): sca.sh has finished" |
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| 116 | $RM ${tmppublicpath}/sca.finished |
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| 117 | #TODO see if there is errors... |
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| 118 | scaFileName=$(basename $scafile) |
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| 119 | scaFileName=${scaFileName%.*} |
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| 120 | #transform the date (sum.trans extension) |
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| 121 | $RM -f ${tmppublicpath}/transdate.finished |
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| 122 | ${scriptpath}/transdate.sh ${scaFileName}.sum |
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| 123 | while [ ! -e "${tmppublicpath}/transdate.finished" ]; do |
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| 124 | $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/transdate.finished" |
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| 125 | date +%T |
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| 126 | sleep 30 |
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| 127 | done |
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| 128 | $ECHO "INFO (${scriptName}): transdate.sh has finished" |
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| 129 | $RM ${tmppublicpath}/transdate.finished |
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| 130 | #TODO see if there is errors... |
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| 131 | #put back into Irod |
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| 132 | # $ECHO "INFO (${scriptName}): where am i: `pwd`" |
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| 133 | # $LS -lrt |
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| 134 | # $ECHO "INFO (${scriptName}): see up directory" |
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| 135 | # $LS -lrt .. |
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| 136 | iput -f -v -K ${iojobpath}/${scaFileName}.sum $i |
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| 137 | iput -f -v -K ${iojobpath}/${scaFileName}.sum.trans $i |
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| 138 | fi |
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| 139 | fi |
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| 140 | $RM ${OUT2} |
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| 141 | done |
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| 142 | |
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| 143 | |
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| 144 | touch ${tmppublicpath}/scaextractor.finished |
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| 145 | exit 0 |
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