| 1 | Title: Status of the programs and scripts used for Amas@Nancay analysis at CCIN2P3
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| 2 | Revision: 28/11/11 (JEC+AST)
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| 3 | Author: J.E Campagne 22/7/11
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| 4 | ----------------------------
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| 5 |
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| 6 | Intro:
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| 7 | All these tools are located for the while in J.E Campagne private directory, so they are not
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| 8 | yet available to public usage and this note is essentially for information and software tracking.
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| 9 |
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| 10 | -----------------------------------------------------------
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| 11 | Analysis program
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| 12 | ------------------------------------------------------------
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| 13 | o analysis.cc
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| 14 | - perfom
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| 15 | . gain spectra determination + monitoring
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| 16 | . ON-OFF spectra without calibration
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| 17 | . calibration coefficient determination + monitoring
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| 18 | . ON-OFF spectra determination (no RT calibration included)
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| 19 | - Todo
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| 20 | . include RT calibration, or a RT/BAO calibration using a calibrator source
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| 21 | - comments
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| 22 | . the STANDARD usage since end september 11 is GAIN + ON-OFF wo calibration
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 | -----------------------------------------------------------
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| 28 | Collection of Bourne SHELL script for analysis
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| 29 | ------------------------------------------------------------
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| 30 |
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| 31 | A) Utilitary scripts to follow the DAQ & Analysis progress
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| 32 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 33 | o mkarchive.sh
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| 34 | ---------------
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| 35 | - perform the archive of a processing in Irods
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| 36 | . create a <ppTag>Arch<apTag> directory
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| 37 | . move the cabli_*.txt files
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| 38 | . move the *.ppf / *.fits files results of the analysis
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| 39 | . for the gain...fits only a copy is done to keep a version
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| 40 | . move the Off and On directorys
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| 41 | . create new fresh On and Off directory
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| 42 |
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| 43 |
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| 44 | o statusdaq.sh
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| 45 | --------------
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| 46 | - perform
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| 47 | . scan all the /baoradio/data/AmamNancay to look at the directories and and make
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| 48 | a summary of the Data Acquisition
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| 49 |
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| 50 | o statusheader.sh
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| 51 | -----------------
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| 52 | - perform
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| 53 | . scan Irods directories to look at header fits files extraction progress
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| 54 |
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| 55 | o statusgain.sh
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| 56 | ---------------
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| 57 | - perform
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| 58 | . scan Irods directories to look at FINAL gain_* files production progress
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| 59 |
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| 60 | o statuscalib.sh
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| 61 | ----------------
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| 62 | - perform
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| 63 | . scan Irods directories to look at INTERMEDIATE calibcycle files production progress
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| 64 | - Todo
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| 65 | . scan also for FINAL calib_* files progress
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| 66 | o statusonoff.sh
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| 67 | ----------------
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| 68 | - perform
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| 69 | . scan Irods On and Off directories to look at datacycle<cycle> contents
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| 70 |
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| 71 | o statusCycles.sh
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| 72 | -----------------
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| 73 | - perform
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| 74 | . scan Irods directories to look at sca<>.sum files to count the number of cycles per run
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| 75 |
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| 76 | B) Utilitary scripts to send to GE system high level task (note old BQS batch is obsolete now)
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| 77 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 78 | o submit2ge-hdrfitsextractor.sh
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| 79 | --------------------------------
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| 80 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 81 | - send the hdrfitsextractor.sh script to GE system
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| 82 |
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| 83 |
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| 84 | o submit2ge-procspecmfib.sh
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| 85 | -----------------------------
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| 86 | - SHOULD BE DONE for processing signals for FFT/paquet median filtering
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| 87 | - GAIN/CALIB/ON, OFF...
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| 88 | - prepare and send in batch the proc_specmfib.sh to GE
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| 89 | - exemple
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| 90 | ./submit2ge-procspecmfib.sh -src Abell85 -date 20110422 -type CALIBOFF -fcycle 8 -lcycle 14
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| 91 |
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| 92 | o submit2ge-anagainmaker.sh
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| 93 | ----------------------------
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| 94 | - done after proc_specmfib
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| 95 | - prepare and send the analyse.cc prg for gain computation
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| 96 | - exemple
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| 97 |
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| 98 | o submit2ge-anacalibmaker.sh
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| 99 | ----------------------------
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| 100 | - done after proc_specmfib
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| 101 | - prepare and send the analyse.cc prg for calibration computation
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| 102 | - exemples:
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| 103 | > $./submit2ge-anacalibmaker.sh -src Abell85 -date 20110410
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| 104 |
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| 105 | o submit2ge-scaextractor.sh
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| 106 | --------------------------------
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| 107 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 108 | - send the scaextractor.sh script to GE system
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| 109 | although this script is called by getscafiles lower level script
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| 110 |
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| 111 |
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| 112 | C) High level scripts
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| 113 | ++++++++++++++++++++++
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| 114 | o hdrfitsextractor.sh
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| 115 | ---------------------
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| 116 | - SHOULD BE DONE BEFORE ANYTHING
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| 117 | - perform
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| 118 | . extraction of the header part of the signalXYZ.fits files and
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| 119 | . put the results into Irods
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| 120 | - use
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| 121 | . statusdaq.sh
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| 122 |
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| 123 | o anagainmaker.sh
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| 124 | -----------------
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| 125 | - perform
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| 126 | . the analysis to determine the
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| 127 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 128 | . put the results into Irods
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| 129 | - use
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| 130 | - getscafiles.sh
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| 131 | - analysis.cc
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| 132 |
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| 133 | o anacalibmaker.sh
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| 134 | ------------------
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| 135 | - perfom
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| 136 | . prepare the analysis
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| 137 | . put calib_* files (monitoring + calibration files) into Irods
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| 138 | - use
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| 139 | - getscafiles.sh
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| 140 | - analysis.cc
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| 141 |
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| 142 |
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| 143 |
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| 144 | o anarawonoffmaker.sh
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| 145 | ---------------------
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| 146 | - perform
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| 147 | . prepare the analysis
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| 148 | . put dataRaw_* (raw spectra),
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| 149 | diffOnOffRaw_* (ON-OFF spectra although not used by final analysis)
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| 150 |
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| 151 | D) Lower level scripts
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| 152 | ++++++++++++++++++++++
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| 153 |
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| 154 | o proc_specmfib.sh
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| 155 | ------------------
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| 156 | - perform all the preparation work to send in batch the "specmfib"
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| 157 | program which perform the FFT and median/mean spectra
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| 158 | for the GAIN/CALIB/ON-OFF... task
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| 159 | - use
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| 160 | - getscafiles.sh, select.sh, statusdaq.sh, getsignalfiles.sh
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| 161 | - comments
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| 162 | - this is the pre-processing of the data to be used before
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| 163 | anaXYZ script which are post-processing
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| 164 |
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| 165 |
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| 166 | o scaextractor.sh
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| 167 | -----------------
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| 168 | - perform
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| 169 | 1) extraction of the scaXYZ file
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| 170 | 2) if the scaXYZ.sum and the scaXYZ.sum.trans files do not exist
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| 171 | . create and put them into Irods
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| 172 | . scaXYZ.sum = summary of the SCA file
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| 173 | . scaXYZ.sum.trans = transformation of the date format of the scaXYZ.sum file
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| 174 | - use
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| 175 | - sca.sh, transdate.sh
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| 176 |
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| 177 | o sca.sh
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| 178 | --------
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| 179 | - perform
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| 180 | . produce the scaXYZ.sum (= summary of the SCA file) from a scaXYZ file
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| 181 |
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| 182 | o transdate.sh
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| 183 | --------------
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| 184 | - perform
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| 185 | . produce the scaXYZ.sum.trans (= transformation of the date format) from the scaXYZ.sum file
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| 186 |
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| 187 | o select.sh
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| 188 | -----------
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| 189 | -perform
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| 190 | . the selection of the signalXYZ.fits files according to the type of task requested
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| 191 | as ON, OFF, CALIBON, CALIBOFF, GAIN
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| 192 |
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| 193 | o getscafiles.sh
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| 194 | ----------------
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| 195 | - perform
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| 196 | . download from Irods the scaXYZ, scaXYZ.sum and scaXYZ.sum.trans files
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| 197 | - use
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| 198 | scaextractor.sh
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| 199 |
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| 200 | o getsignals.sh
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| 201 | ---------------
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| 202 | - perform
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| 203 | . download from Irods the signalXYZ.fits files
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| 204 |
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| 205 |
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| 206 |
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| 207 |
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