| 1 | Title: Status of the programs and scripts used for Amas@Nancay analysis at CCIN2P3
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| 2 | Revision: 11/10/11 (JEC)
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| 3 | Author: J.E Campagne 22/7/11
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| 4 | ----------------------------
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| 5 |
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| 6 | Intro:
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| 7 | All these tools are located for the while in J.E Campagne private directory, so they are not
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| 8 | yet available to public usage and this note is essentially for information and software tracking.
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| 9 |
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| 10 | -----------------------------------------------------------
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| 11 | Analysis program
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| 12 | ------------------------------------------------------------
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| 13 | o analysis.cc
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| 14 | - perfom
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| 15 | . gain spectra determination + monitoring
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| 16 | . ON-OFF spectra without calibration
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| 17 | . calibration coefficient determination + monitoring
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| 18 | . ON-OFF spectra determination (no RT calibration included)
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| 19 | - Todo
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| 20 | . include RT calibration, or a RT/BAO calibration using a calibrator source
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| 21 | - comments
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| 22 | . the STANDARD usage since end september 11 is GAIN + ON-OFF wo calibration
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| 23 |
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| 24 | -----------------------------------------------------------
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| 25 | Collection of Bourne SHELL script for analysis
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| 26 | ------------------------------------------------------------
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| 27 |
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| 28 | A) Utilitary scripts to follow the DAQ & Analysis progress
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| 29 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 30 | o statusdaq.sh
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| 31 | --------------
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| 32 | - perform
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| 33 | . scan all the /baoradio/data/AmamNancay to look at the directories and and make
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| 34 | a summary of the Data Acquisition
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| 35 |
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| 36 | o statusheader.sh
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| 37 | -----------------
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| 38 | - perform
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| 39 | . scan Irods directories to look at header fits files extraction progress
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| 40 |
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| 41 | o statusgain.sh
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| 42 | ---------------
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| 43 | - perform
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| 44 | . scan Irods directories to look at FINAL gain_* files production progress
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| 45 |
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| 46 | o statuscalib.sh
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| 47 | ----------------
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| 48 | - perform
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| 49 | . scan Irods directories to look at INTERMEDIATE calibcycle files production progress
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| 50 | - Todo
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| 51 | . scan also for FINAL calib_* files progress
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| 52 | o statusonoff.sh
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| 53 | ----------------
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| 54 | - perform
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| 55 | . scan Irods On and Off directories to look at datacycle<cycle> contents
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| 56 |
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| 57 | o statusCycles.sh
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| 58 | -----------------
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| 59 | - perform
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| 60 | . scan Irods directories to look at sca<>.sum files to count the number of cycles per run
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| 61 |
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| 62 | B) Utilitary scripts to send to BQS system high level task
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| 63 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 64 | o submit2bqs-hdrfitsextractor.sh
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| 65 | --------------------------------
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| 66 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 67 | - send the hdrfitsextractor.sh script to BQS system
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| 68 | - Todo list
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| 69 | - TO MIGRATE TO NEW BATCH
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| 70 |
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| 71 | o submit2bqs-scaextractor.sh
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| 72 | --------------------------------
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| 73 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 74 | - send the scaextractor.sh script to BQS system
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| 75 | although this script is called by getscafiles lower level script
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| 76 | - Todo list
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| 77 | - TO MIGRATE TO NEW BATCH
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| 78 |
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| 79 | o submit2bqs-procspecmfib.sh
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| 80 | -----------------------------
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| 81 | - SHOULD BE DONE for processing signals for FFT/paquet median filtering
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| 82 | - GAIN/CALIB/ON, OFF...
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| 83 | - prepare and send in batch the proc_specmfib.sh to BQS
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| 84 | - exemple
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| 85 | - Todo list
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| 86 | - TO MIGRATE TO NEW BATCH
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| 87 |
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| 88 | o submit2bqs-anagainmaker.sh
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| 89 | ----------------------------
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| 90 | - done after proc_specmfib
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| 91 | - prepare and send the analyse.cc prg for gain computation
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| 92 | - exemple
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| 93 | - Todo list
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| 94 | - TO MIGRATE TO NEW BATCH
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| 95 |
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| 96 | o submit2bqs-anacalibmaker.sh
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| 97 | ----------------------------
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| 98 | - done after proc_specmfib
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| 99 | - prepare and send the analyse.cc prg for calibration computation
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| 100 | - exemples:
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| 101 | > $./submit2bqs-anacalibmaker.sh -src Abell85 -date 20110410
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| 102 |
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| 103 |
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| 104 | - Todo list
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| 105 | - TO MIGRATE TO NEW BATCH
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| 106 |
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| 107 | o submit2qs-onoffmaker.sh (OBSOLETE ???)
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| 108 | --------------------------
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| 109 | - send the onoffmaker.sh script to BQS system
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| 110 | - Todo list
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| 111 | - TO MIGRATE TO NEW BATCH
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| 112 |
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| 113 | o submit2bqs-rawonoffmaker.sh (OBSOLETE ???)
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| 114 | -----------------------------
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| 115 | - used after the anagainmaker
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| 116 | - prepare and send in batch the proc_rawonoff.sh to BQS system
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| 117 | - exemple submit2bqs-rawonoffmaker.sh -src Abell85 -date 20110417 -fcycle 8 -lcycle 23 -type ON
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| 118 | - Todo list
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| 119 | - TO MIGRATE TO NEW BATCH
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| 120 |
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| 121 | o submit2qs-gainmaker.sh (OBSOLETE)
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| 122 | -------------------------
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| 123 | - send the gainmaker.sh script to BQS system
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| 124 | - Todo list
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| 125 | - TO MIGRATE TO NEW BATCH
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| 126 |
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| 127 | o submit2qs-calibmaker.sh (OBSOLETE)
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| 128 | --------------------------
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| 129 | - send the calibmaker.sh script to BQS system
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| 130 | - Todo list
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| 131 | - TO MIGRATE TO NEW BATCH
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| 132 |
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| 133 |
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| 134 | C) High level scripts
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| 135 | ++++++++++++++++++++++
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| 136 | o hdrfitsextractor.sh
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| 137 | ---------------------
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| 138 | - SHOULD BE DONE BEFORE ANYTHING
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| 139 | - perform
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| 140 | . extraction of the header part of the signalXYZ.fits files and
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| 141 | . put the results into Irods
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| 142 | - use
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| 143 | . statusdaq.sh
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| 144 |
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| 145 | o anagainmaker.sh
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| 146 | -----------------
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| 147 | - perform
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| 148 | . the analysis of the above fits files to determine the
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| 149 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 150 | . put the results into Irods
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| 151 | - use
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| 152 | - getscafiles.sh
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| 153 | - analysis.cc
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| 154 |
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| 155 | o anacalibmaker.sh
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| 156 | ------------------
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| 157 | - perfom
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| 158 | . prepare the analysis of the above fits files
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| 159 | . put calib_* files (monitoring + calibration files) into Irods
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| 160 | - use
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| 161 | - getscafiles.sh
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| 162 | - analysis.cc
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| 163 |
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| 164 |
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| 165 | o gainmaker.sh (OBOLETE)
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| 166 | ---------------
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| 167 | - perform
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| 168 | 1) the extraction of signalXYZ.fits files
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| 169 | concerned by the OFF-calibration time window
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| 170 | of the cycle located at the middle of the run
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| 171 | 2) . the analysis of the above fits files to determine the
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| 172 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 173 | . put the results into Irods
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| 174 | - use
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| 175 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 176 | - analysis.cc
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| 177 |
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| 178 | o calibmaker.sh (OBSOLETE)
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| 179 | ---------------
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| 180 | - perfom
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| 181 | 1) several x-checks to see at which stage of the analysis process we are
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| 182 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 183 | 3) . prepare the analysis of the above fits files
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| 184 | . put calib_* files (monitoring + calibration files) into Irods
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| 185 | - use
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| 186 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 187 | - analysis.cc
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| 188 |
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| 189 | o onoffmaker.sh (preliminary)
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| 190 | ----------------------------
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| 191 | - perform
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| 192 | 1) several x-checks to see at which stage of the analysis process we are
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| 193 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 194 | 3) prepare the analysis of the above fits files
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| 195 | 4) put dataRaw_* (raw spectra),
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| 196 | dataBAOCalib_* (after BAO calibration),
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| 197 | dataBAORTCalib_* (after BAO & RT calibration),
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| 198 | diffOnOff_* (ON-OFF spectra)
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| 199 |
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| 200 | D) Lower level scripts
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| 201 | ++++++++++++++++++++++
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| 202 |
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| 203 | o proc_specmfib.sh
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| 204 | ------------------
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| 205 | - perform all the preparation work to send in batch the "specmfib"
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| 206 | program which perform the FFT and median/mean spectra
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| 207 | for the GAIN/CALIB/ON-OFF... task
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| 208 | - use
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| 209 | - getscafiles.sh, select.sh, statusdaq.sh, getsignalfiles.sh
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| 210 | - comments
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| 211 | - this is the pre-processing of the data to be used before
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| 212 | anaXYZ script which are post-processing
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| 213 |
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| 214 |
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| 215 | o proc_rawonoff.sh (OBSOLETE)
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| 216 | ------------------
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| 217 | - this is the script to use to perform the "datacycle" contents
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| 218 | - perform all the preparation work to send in batch the "specmfib" program
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| 219 | which perform the FFT and median/mean spectra for the ON-OFF task
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| 220 | - use
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| 221 | - getscafiles.sh, select.sh, statusdaq.sh, getsignalfiles.sh
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| 222 | - comments
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| 223 | - contrary to proc_script (below) specmfib is activated in the same thread
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| 224 |
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| 225 | o proc_script.sh (OBSOLETE)
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| 226 | -----------------
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| 227 | - VERY BUSY script
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| 228 | - perform
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| 229 | 1) all the preparation work to send in batch the "specmfib" program
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| 230 | which perform the FFT and median/mean spectra for GAIN, CALIBRATION, ON-OFF task
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| 231 | 2) the script that is sent in batch put the results into Irods
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| 232 | - use
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| 233 | - getscafiles.sh, select.sh, getsignalfiles.sh
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| 234 | - Todo list
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| 235 | - TO MIGRATE TO NEW BATCH
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| 236 |
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| 237 |
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| 238 | o scaextractor.sh
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| 239 | -----------------
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| 240 | - perform
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| 241 | 1) extraction of the scaXYZ file
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| 242 | 2) if the scaXYZ.sum and the scaXYZ.sum.trans files do not exist
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| 243 | . create and put them into Irods
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| 244 | . scaXYZ.sum = summary of the SCA file
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| 245 | . scaXYZ.sum.trans = transformation of the date format of the scaXYZ.sum file
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| 246 | - use
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| 247 | - sca.sh, transdate.sh
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| 248 |
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| 249 | o sca.sh
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| 250 | --------
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| 251 | - perform
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| 252 | . produce the scaXYZ.sum (= summary of the SCA file) from a scaXYZ file
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| 253 |
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| 254 | o transdate.sh
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| 255 | --------------
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| 256 | - perform
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| 257 | . produce the scaXYZ.sum.trans (= transformation of the date format) from the scaXYZ.sum file
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| 258 |
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| 259 | o select.sh
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| 260 | -----------
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| 261 | -perform
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| 262 | . the selection of the signalXYZ.fits files according to the type of task requested
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| 263 | as ON, OFF, CALIBON, CALIBOFF, GAIN
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| 264 |
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| 265 | o getscafiles.sh
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| 266 | ----------------
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| 267 | - perform
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| 268 | . download from Irods the scaXYZ, scaXYZ.sum and scaXYZ.sum.trans files
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| 269 | - use
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| 270 | scaextractor.sh
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| 271 |
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| 272 | o getsignals.sh
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| 273 | ---------------
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| 274 | - perform
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| 275 | . download from Irods the signalXYZ.fits files
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| 276 |
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| 277 |
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| 278 |
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| 279 |
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