[507] | 1 | #!/bin/sh
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| 2 | #Get SCA file and summary + transformed date file
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| 3 | #
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| 4 | DATE=/bin/date
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| 5 | GREP=/bin/grep
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| 6 | AWK=/bin/awk
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| 7 | ECHO=/bin/echo
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| 8 | TR=/usr/bin/tr
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| 9 | MKDIR=/bin/mkdir
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| 10 | CAT=/bin/cat
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| 11 | PRINTF=/usr/bin/printf
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| 12 | RM=/bin/rm
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| 13 | LS=/bin/ls
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| 14 | DefaultIFS=$' \t\n'
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| 15 | IFS=$DefaultIFS
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| 16 |
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| 17 | scriptName="`basename $0`"
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| 18 | $ECHO "Processing script ${scriptName} at `date`"
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| 19 |
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| 20 |
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| 21 | if [ ! $# = 2 ]; then
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| 22 | $ECHO "usage: ${script
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| 23 | Name} <source:ex. Abell85> <date:YYYYMMDD>"
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[540] | 24 | #JEC 29/9/11 avoid finished stuff
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| 25 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 26 | exit 0
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| 27 | fi
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| 28 |
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| 29 | # Irods environment settings
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| 30 | #export PATH=$PATH:/home/bao/irods2.5_LinuxSL5
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| 31 | . /usr/local/shared/bin/irods_env.sh -noverbose
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| 32 |
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| 33 |
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| 34 | sourceRadio=$1
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| 35 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" `
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| 36 | dateDAQ=$2
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| 37 |
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| 38 |
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| 39 | #Path to public backupable path
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| 40 | publicpath="/afs/in2p3.fr/home/c/campagne/public"
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| 41 |
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| 42 | #temporary files to synchronize scripts
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[516] | 43 | tmppublicpath=${TMPPUBLICPATH}
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[507] | 44 | $LS -l ${tmppublicpath} > /dev/null
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| 45 |
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| 46 |
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| 47 | #Path where the job will do temporary IO
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| 48 | if [ ${ENVIRONMENT} == "INTERACTIVE" ]; then
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| 49 | iojobpath="/sps/baoradio/AmasNancay/JEC"
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| 50 | $MKDIR -p $iojobpath
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| 51 | elif [ ${ENVIRONMENT} == "BATCH" ] ; then
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| 52 | iojobpath=${TMPBATCH}
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| 53 | else
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| 54 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed"
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[540] | 55 | #JEC 29/9/11 avoid finished stuff
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| 56 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 57 | exit 1
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| 58 | fi
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| 59 | cd ${iojobpath}
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| 60 |
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| 61 | localpath="${sourceRadio}/${dateDAQ}${srclower}"
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| 62 | $MKDIR -p ./${localpath}
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| 63 | cd ./${localpath}
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| 64 |
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| 65 |
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| 66 | #Path of the utility scripts
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[510] | 67 | scriptpath="/afs/in2p3.fr/home/c/campagne/private/work/AmasNancay"
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[507] | 68 |
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[540] | 69 | #JEC 1/10/11 Use generic baodaqstatus name
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[507] | 70 | #look if the run exists
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[540] | 71 | #tag=`${DATE} +%F`
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| 72 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt
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| 73 | OUT1=${publicpath}/baodaqstatus-current.txt
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| 74 |
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[507] | 75 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then
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| 76 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
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| 77 | # $RM -f ${tmppublicpath}/statusdaq.finished
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| 78 | # ${scriptpath}/statusdaq.sh > ${OUT1}
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| 79 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
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| 80 | # $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/statusdaq.finished"
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| 81 | # date +%T
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| 82 | # sleep 30
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| 83 | # done
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| 84 | # $RM ${tmppublicpath}/statusdaq.finished
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| 85 | $ECHO "FATAL (${scriptName}): ${OUT1} is missing or not readable..."
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[540] | 86 | #JEC 29/9/11 avoid finished stuff
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| 87 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 88 | exit 1
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| 89 | fi
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| 90 |
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| 91 | nfiles=`${GREP} "${sourceRadio}.*${dateDAQ}" ${OUT1} | ${AWK} '(NF==4){print $4}'`
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| 92 |
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| 93 | if [ "<${nfiles}>" = "<>" ]; then
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| 94 | $ECHO "FATAL (${scriptName}): No run found for <${sourceRadio}> and date <${dateDAQ}>"
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[540] | 95 | #JEC 29/9/11 avoid finished stuff
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| 96 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 97 | exit 1
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| 98 | fi
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| 99 |
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| 100 |
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| 101 | #Look if the run should/can be prepared wrt SCA file transformation
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| 102 | OUT2=./scaStatus.$$
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[540] | 103 | #JEC 29/9/11 avoid finished stuff
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| 104 | #$RM -f ${tmppublicpath}/scaextractor.finished
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[507] | 105 | ${scriptpath}/scaextractor.sh $sourceRadio > ${OUT2} 2>&1
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[540] | 106 | #while [ ! -f "${tmppublicpath}/scaextractor.finished" ]; do
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| 107 | # $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/scaextractor.finished"
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| 108 | # date +%T
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| 109 | # sleep 30
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| 110 | #done
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| 111 | #$RM ${tmppublicpath}/scaextractor.finished
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[507] | 112 |
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| 113 |
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| 114 | status=`$GREP "^FATAL.*${sourceRadio}.*${dateDAQ}" ${OUT2}`
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| 115 |
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| 116 | if [ "<$status>" != "<>" ]; then
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| 117 | $ECHO "FATAL (${scriptName}): connot proceed further with $sourceRadio $dateDAQ"
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[540] | 118 | #JEC 29/9/11 avoid finished stuff
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| 119 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 120 | exit 1
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| 121 | fi
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| 122 | $RM $OUT2
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| 123 |
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| 124 | #dowload sca files...
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| 125 | dirIrod="/baoradio/data/AmasNancay/${sourceRadio}/${dateDAQ}${srclower}"
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| 126 | dirLocal="."
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| 127 |
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| 128 | if [ ! -e $dirLocal ]; then
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| 129 | $MKDIR -p $dirLocal
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| 130 | fi
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| 131 |
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| 132 | cd $dirLocal
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| 133 |
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| 134 | OUT3=./scaFiles.$$
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| 135 | ils $dirIrod | $GREP -i "sca" > ${OUT3}
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| 136 | tableau=( `$CAT ${OUT3}` )
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| 137 | IFS='
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| 138 | '
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| 139 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 140 | IFS=$DefaultIFS
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| 141 | $RM $OUT3
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| 142 |
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| 143 | OUT4=./igetStatus.$$
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| 144 | for i in ${tableau[@]}
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| 145 | do
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| 146 | if [ ! -e $i ]; then
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| 147 | iget -r -f -v -K ${dirIrod}/$i ${dirLocal} > ${OUT4} 2>&1
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| 148 | fi
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| 149 | done
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| 150 |
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| 151 | igetStatus=`$GREP "^ERROR" ${OUT4}`
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| 152 | if [ "<$igetStatus>" != "<>" ]; then
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| 153 | $ECHO "FATAL (${scriptName}): error while iget:"
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| 154 | $ECHO $igetStatus
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[540] | 155 | #JEC 29/9/11 avoid finished stuff
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| 156 | # touch ${tmppublicpath}/getscafiles.finished
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[507] | 157 | exit 1
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| 158 | fi
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| 159 |
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| 160 | $RM -f $OUT4
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| 161 |
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| 162 | touch ${tmppublicpath}/getscafiles.finished
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| 163 | exit 0
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