[540] | 1 | // Utilisation de SOPHYA pour faciliter les tests ... |
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| 2 | #include "sopnamsp.h" |
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| 3 | #include "machdefs.h" |
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| 4 | #include <dirent.h> |
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| 5 | #include <matharr.h> |
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| 6 | |
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| 7 | // include standard c/c++ |
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[562] | 8 | #include <regex.h> |
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| 9 | #include <stdio.h> |
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| 10 | #include <stdlib.h> |
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| 11 | #include <limits> |
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[540] | 12 | #include <iostream> |
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| 13 | #include <fstream> |
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| 14 | #include <string> |
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| 15 | #include <vector> |
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| 16 | #include <map> |
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| 17 | #include <functional> |
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| 18 | #include <algorithm> |
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| 19 | #include <numeric> |
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| 20 | #include <list> |
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| 21 | #include <exception> |
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| 22 | |
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| 23 | // include sophya mesure ressource CPU/memoire ... |
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| 24 | #include "resusage.h" |
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| 25 | #include "ctimer.h" |
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| 26 | #include "timing.h" |
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| 27 | #include "timestamp.h" |
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| 28 | #include "strutilxx.h" |
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| 29 | #include "ntuple.h" |
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| 30 | #include "fioarr.h" |
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| 31 | #include "tarrinit.h" |
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| 32 | #include "histinit.h" |
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| 33 | #include "fitsioserver.h" |
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| 34 | #include "fiosinit.h" |
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| 35 | #include "ppersist.h" |
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| 36 | |
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| 37 | //----------------------------------------------- |
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[542] | 38 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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[544] | 39 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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[560] | 40 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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| 41 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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[542] | 42 | //----------------------------------------------- |
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[544] | 43 | //Input parameters |
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| 44 | struct Param { |
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| 45 | int debuglev_; //debug |
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| 46 | string inPath_; //root directory of the input files |
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| 47 | string outPath_; //output files are located here |
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| 48 | string sourceName_; //source name & subdirectory of the input files |
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| 49 | string ppfFile_; //generic name of the input files |
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| 50 | int nSliceInFreq_; //used by reduceSpectra() fnc |
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[561] | 51 | string calibFreq_; //freq. value used for calibration |
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[562] | 52 | r_4 rcalibFreq_; //float version |
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| 53 | string calibBandFreq_; //band of freq. used for calibration |
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| 54 | r_4 rcalibBandFreq_; //float version |
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| 55 | int maxNumberCycles_;//maximum number of cycles to be treated |
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[544] | 56 | } para; |
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| 57 | //-------------------------------------------------------------- |
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| 58 | //Utility functions |
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[552] | 59 | |
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[562] | 60 | sa_size_t freqToChan(r_4 f){ |
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[553] | 61 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
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| 62 | } |
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[562] | 63 | //-------- |
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| 64 | //COMPUTE the mean value on a freq. range for all channels |
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| 65 | //-------- |
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| 66 | void meanInRange(const TMatrix<r_4> mtx, |
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| 67 | sa_size_t chLow, |
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| 68 | sa_size_t chHigh, |
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| 69 | TVector<r_4>& vec){ |
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| 70 | sa_size_t nr = mtx.NRows(); |
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| 71 | for (sa_size_t ir=0; ir<nr; ir++){ |
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| 72 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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| 73 | double mean, sigma; |
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| 74 | MeanSigma(tmp,mean,sigma); |
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| 75 | vec(ir) = mean; |
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| 76 | } |
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| 77 | } |
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[553] | 78 | //--------- |
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[561] | 79 | class median_of_empty_list_exception:public std::exception{ |
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[552] | 80 | virtual const char* what() const throw() { |
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| 81 | return "Attempt to take the median of an empty list of numbers. " |
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| 82 | "The median of an empty list is undefined."; |
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| 83 | } |
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| 84 | }; |
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| 85 | template<class RandAccessIter> |
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| 86 | double median(RandAccessIter begin, RandAccessIter end) |
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| 87 | throw(median_of_empty_list_exception){ |
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| 88 | if(begin == end){ throw median_of_empty_list_exception(); } |
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| 89 | std::size_t size = end - begin; |
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| 90 | std::size_t middleIdx = size/2; |
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| 91 | RandAccessIter target = begin + middleIdx; |
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| 92 | std::nth_element(begin, target, end); |
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| 93 | |
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| 94 | if(size % 2 != 0){ //Odd number of elements |
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| 95 | return *target; |
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| 96 | }else{ //Even number of elements |
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| 97 | double a = *target; |
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| 98 | RandAccessIter targetNeighbor= target-1; |
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| 99 | std::nth_element(begin, targetNeighbor, end); |
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| 100 | return (a+*targetNeighbor)/2.0; |
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| 101 | } |
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| 102 | } |
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| 103 | |
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[561] | 104 | //------------- |
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| 105 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
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| 106 | // Skip delimiters at beginning. |
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| 107 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
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| 108 | // Find first "non-delimiter". |
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| 109 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
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| 110 | |
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| 111 | while (string::npos != pos || string::npos != lastPos) |
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| 112 | { |
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| 113 | // Found a token, add it to the vector. |
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| 114 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
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| 115 | // Skip delimiters. Note the "not_of" |
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| 116 | lastPos = str.find_first_not_of(delimiters, pos); |
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| 117 | // Find next "non-delimiter" |
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| 118 | pos = str.find_first_of(delimiters, lastPos); |
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| 119 | } |
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| 120 | } |
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[544] | 121 | //-------------------------------------------------------------- |
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[540] | 122 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
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| 123 | int i, w=0, len; |
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| 124 | char *word = NULL; |
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| 125 | regex_t rgT; |
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| 126 | regmatch_t match; |
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| 127 | regcomp(&rgT,patrn,REG_EXTENDED); |
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| 128 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
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| 129 | *begin = (int)match.rm_so; |
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| 130 | *end = (int)match.rm_eo; |
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| 131 | len = *end-*begin; |
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| 132 | word=(char*)malloc(len+1); |
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| 133 | for (i=*begin; i<*end; i++) { |
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| 134 | word[w] = string[i]; |
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| 135 | w++; } |
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| 136 | word[w]=0; |
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| 137 | } |
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| 138 | regfree(&rgT); |
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| 139 | return word; |
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| 140 | } |
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[544] | 141 | //------- |
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[540] | 142 | sa_size_t round_sa(r_4 r) { |
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| 143 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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| 144 | } |
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| 145 | //----- |
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| 146 | string StringToLower(string strToConvert){ |
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| 147 | //change each element of the string to lower case |
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| 148 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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| 149 | strToConvert[i] = tolower(strToConvert[i]); |
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| 150 | } |
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| 151 | return strToConvert;//return the converted string |
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| 152 | } |
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| 153 | //----- |
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| 154 | bool stringCompare( const string &left, const string &right ){ |
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| 155 | if( left.size() < right.size() ) |
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| 156 | return true; |
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| 157 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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| 158 | if( tolower( *lit ) < tolower( *rit ) ) |
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| 159 | return true; |
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| 160 | else if( tolower( *lit ) > tolower( *rit ) ) |
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| 161 | return false; |
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| 162 | return false; |
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| 163 | } |
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| 164 | //----- |
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| 165 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
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| 166 | list<string> theList; |
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| 167 | |
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| 168 | |
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| 169 | DIR *dip; |
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| 170 | struct dirent *dit; |
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| 171 | string msg; string fileName; |
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| 172 | string fullFileName; |
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| 173 | size_t found; |
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| 174 | |
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| 175 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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| 176 | msg = "opendir failed on directory "+dir; |
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| 177 | throw msg; |
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| 178 | } |
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| 179 | while ( (dit = readdir(dip)) != NULL ) { |
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| 180 | fileName = dit->d_name; |
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| 181 | found=fileName.find(filePettern); |
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| 182 | if (found != string::npos) { |
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| 183 | fullFileName = dir + "/"; |
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| 184 | fullFileName += fileName; |
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| 185 | theList.push_back(fullFileName); |
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| 186 | } |
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| 187 | }//eo while |
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| 188 | if (closedir(dip) == -1) { |
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| 189 | msg = "closedir failed on directory "+dir; |
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| 190 | throw msg; |
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| 191 | } |
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| 192 | |
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| 193 | theList.sort(stringCompare); |
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| 194 | |
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| 195 | return theList; |
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| 196 | |
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| 197 | } |
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| 198 | // |
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| 199 | class StringMatch : public unary_function<string,bool> { |
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| 200 | public: |
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| 201 | StringMatch(const string& pattern): pattern_(pattern){} |
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| 202 | bool operator()(const string& aStr) const { |
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| 203 | |
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| 204 | |
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| 205 | int b,e; |
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| 206 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
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| 207 | |
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[541] | 208 | // cout << "investigate " << aStr << " to find " << pattern_ |
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| 209 | // << "[" <<b<<","<<e<<"]" |
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| 210 | // << endl; |
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[540] | 211 | |
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| 212 | |
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| 213 | if (b != 0) return false; |
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[544] | 214 | if (e != (int)aStr.size()) return false; |
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[540] | 215 | return true; |
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| 216 | |
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| 217 | } |
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| 218 | private: |
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| 219 | string pattern_; |
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| 220 | }; |
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| 221 | //------------------------------------------------------- |
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[544] | 222 | //Rebin in frequence + compute mean and sigma |
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| 223 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
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| 224 | TMatrix<r_4>& meanMtx, |
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| 225 | TMatrix<r_4>& sigmaMtx) { |
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| 226 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
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| 227 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
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| 228 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
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| 229 | sa_size_t freqLow= iSlice*deltaFreq; |
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| 230 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
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| 231 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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| 232 | TVector<r_4> reducedRow; |
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| 233 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
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| 234 | double mean; |
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| 235 | double sigma; |
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| 236 | MeanSigma(reducedRow,mean,sigma); |
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| 237 | meanMtx(iCh,iSlice) = mean; |
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| 238 | sigmaMtx(iCh,iSlice) = sigma; |
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| 239 | }//eo loop on channels |
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| 240 | }//eo loop on slices |
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| 241 | } |
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[541] | 242 | //------------------------------------------------------- |
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[560] | 243 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
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| 244 | //Used like: |
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| 245 | // |
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[561] | 246 | // void meanCalibBAODiffOnOffCycles() throw(string) { |
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| 247 | |
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| 248 | // list<string> listOfFiles; |
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| 249 | // string directoryName; |
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| 250 | // directoryName = para.inPath_ + "/" + para.sourceName_; |
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| 251 | |
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| 252 | // //Make the listing of the directory |
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| 253 | // listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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| 254 | |
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| 255 | // list<string>::const_iterator iFile, iFileEnd, iSpecOff, iSpecOffEnd, iSpecOn, iSpecOnEnd; |
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| 256 | // iFileEnd = listOfFiles.end(); |
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| 257 | |
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| 258 | |
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| 259 | // //Loop on files |
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| 260 | // uint_4 nRuns=0; |
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[562] | 261 | // TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
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[561] | 262 | |
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| 263 | |
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| 264 | // for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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| 265 | // if (para.debuglev_>90){ |
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| 266 | // cout << "load file <" << *iFile << ">" << endl; |
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| 267 | // } |
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| 268 | |
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| 269 | // vector<string> tokens; |
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| 270 | // split(*File,"_",tokens); |
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| 271 | // string dateOfRun = tokens[1]; |
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| 272 | // string srcLower = tokens[2]; |
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| 273 | // if (para.debuglev_>90){ |
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| 274 | // cout << "date <" << dateOfRun << ">" << endl; |
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| 275 | // } |
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| 276 | |
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| 277 | // PInPersist fin(*iFile); |
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| 278 | // vector<string> vec = fin.GetNameTags(); |
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| 279 | |
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| 280 | // if (para.typeOfCalib_ == "perRun") { |
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| 281 | // /////////////////// |
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| 282 | // //make the calibration of the mean of all Off and On of the run and perform the difference |
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| 283 | |
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| 284 | // vector<string> modeList; |
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| 285 | // modeList.push_back("On"); |
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| 286 | // modeList.push_back("Off"); |
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| 287 | // vector<string>::const_iterator iMode; |
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| 288 | // map<string, TMatrix<r_4> > spectreModeCollect; |
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| 289 | |
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| 290 | // for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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| 291 | // /////////////////// |
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| 292 | // // |
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| 293 | // //Compute the mean of the mode |
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| 294 | // // |
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| 295 | // list<string> listOfSpectra; |
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| 296 | // //Keep only required PPF objects |
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| 297 | // string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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| 298 | // std::remove_copy_if( |
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| 299 | // vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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| 300 | // not1(StringMatch(matchstr)) |
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| 301 | // ); |
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| 302 | |
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| 303 | // listOfSpectra.sort(stringCompare); |
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| 304 | // iSpecEnd = listOfSpectra.end(); |
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| 305 | // TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
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| 306 | // uint_4 nSpectra=0; |
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| 307 | // //Loop of spectra matrix |
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| 308 | // for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
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| 309 | // if (para.debuglev_>90){ |
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| 310 | // cout << " spactra <" << *iSpec << ">" << endl; |
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| 311 | // } |
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| 312 | // TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
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| 313 | // fin.GetObject(aSpec,*iSpec); |
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| 314 | // //How to see if the GetObject is ok?? Ask Reza |
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| 315 | // nSpectra++; |
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| 316 | // meanOfSpectra+=aSpec; |
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| 317 | // }//end loop Off |
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| 318 | // //Mean |
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| 319 | // if(nSpectra>0)meanOfSpectra=(r_4)(nSpectra); |
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| 320 | |
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| 321 | // //BAO Calibrator |
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| 322 | // string calibFileName = directoryName + "/" |
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| 323 | // + "calib_" + dateOfRun + "_" + srcLower + "_"+(*iMode)+"_" |
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| 324 | // + para.calibFreq_ +"MHz-All.txt"; |
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| 325 | // if(debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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| 326 | // ifstream ifs(calibFileName.c_str()); |
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| 327 | // if ( ! ifs.is_open() ) { |
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| 328 | // rc = 999; |
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| 329 | // throw calibFileName + " cannot be opened..."; |
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| 330 | // } |
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| 331 | // TVector<r_4> calibBAOfactors; |
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| 332 | // sa_size_t nr,nc; //values read |
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| 333 | // calibBAOfactorsOff.ReadASCII(ifs,nr,nc); |
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| 334 | // if(debuglev_>9){ |
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| 335 | // cout << "(nr,nc): "<< nr << "," << nc << endl; |
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| 336 | // calibBAOfactors.Print(cout); |
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| 337 | // } |
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| 338 | |
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| 339 | // for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;++iCh){ |
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| 340 | // meanOfSpectra(Range(iCh), Range::all()) /=calibBAOfactors(iCh); |
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| 341 | // } |
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| 342 | // //storage |
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| 343 | // spectreModeCollect.insert(pair<string, TMatrix<r_4> >(*iMode,TMatrix<r_4>(meanOfSpectra,false))); //do not share data (cf. SOPHYA) |
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| 344 | // }//end of mode |
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| 345 | |
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| 346 | // //Take the difference ON-OFF in current run |
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| 347 | // TMatrix<r_4>diffOnOff = spectreModeCollect["On"]-spectreModeCollect["Off"]; |
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| 348 | |
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| 349 | |
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| 350 | // } else if (para.typeOfCalib_ == "perCycle") { |
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| 351 | // //perform the calibration of the OFF and ON per cycle, then make the mean and take the diff |
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| 352 | // } else { |
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| 353 | // string msg="FATAL (meanCalibBAODiffOnOffCycles); unknown calibration mode " |
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| 354 | // + para.typeOfCalib_ ; |
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| 355 | // throw(msg); |
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| 356 | // } |
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| 357 | |
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| 358 | |
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| 359 | // nRuns++; |
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| 360 | |
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| 361 | // }//eo loop on spectra in a file |
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| 362 | // } |
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[560] | 363 | void meanCalibBAODiffOnOffCycles() throw(string) { |
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| 364 | |
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| 365 | list<string> listOfFiles; |
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| 366 | string directoryName; |
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| 367 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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| 368 | |
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| 369 | //Make the listing of the directory |
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| 370 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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| 371 | |
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[561] | 372 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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[560] | 373 | iFileEnd = listOfFiles.end(); |
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[561] | 374 | |
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[562] | 375 | //mean ON-OFF over the list of cycles |
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| 376 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 377 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 378 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 379 | char* onffTupleName[7]={"cycle", |
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| 380 | "onoffRaw0","onoffRun0","onoffCycle0", |
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| 381 | "onoffRaw1","onoffRun1","onoffCycle1"}; |
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| 382 | NTuple onoffevolution(7,onffTupleName); |
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| 383 | r_4 xnt[7]; |
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| 384 | |
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| 385 | //Lower and Higher freq. bin to perform mean follow up |
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| 386 | sa_size_t chLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
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| 387 | sa_size_t chHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
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| 388 | |
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[561] | 389 | //Loop on files/run |
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[562] | 390 | |
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| 391 | int totalNumberCycles=0; //total number of cycles for normalisation |
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[560] | 392 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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| 393 | if (para.debuglev_>90){ |
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| 394 | cout << "load file <" << *iFile << ">" << endl; |
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| 395 | } |
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[561] | 396 | |
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| 397 | vector<string> tokens; |
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| 398 | split(*iFile,"_",tokens); |
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| 399 | string dateOfRun = tokens[1]; |
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| 400 | if (para.debuglev_>90){ |
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| 401 | cout << "date <" << dateOfRun << ">" << endl; |
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| 402 | } |
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| 403 | vector<string> tokens2; |
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| 404 | split(tokens[2],".",tokens2); |
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| 405 | string srcLower = tokens2[0]; |
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| 406 | |
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| 407 | |
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| 408 | |
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[560] | 409 | PInPersist fin(*iFile); |
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| 410 | vector<string> vec = fin.GetNameTags(); |
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| 411 | |
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[561] | 412 | vector<string> modeList; |
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| 413 | modeList.push_back("On"); |
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| 414 | modeList.push_back("Off"); |
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| 415 | vector<string>::const_iterator iMode; |
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| 416 | |
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| 417 | map<string, list<int> > cycleModeCollect; |
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| 418 | |
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| 419 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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| 420 | list<string> listOfSpectra; |
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[560] | 421 | //Keep only required PPF objects |
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[561] | 422 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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[560] | 423 | std::remove_copy_if( |
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| 424 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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[561] | 425 | not1(StringMatch(matchstr)) |
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[560] | 426 | ); |
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| 427 | |
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[561] | 428 | listOfSpectra.sort(stringCompare); |
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| 429 | iSpecEnd = listOfSpectra.end(); |
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[560] | 430 | |
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[561] | 431 | matchstr = "[0-9]+"; |
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[560] | 432 | //Loop of spectra matrix |
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[561] | 433 | list<int> listOfCycles; |
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| 434 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
| 435 | int b,e; |
---|
| 436 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
[560] | 437 | if (para.debuglev_>90){ |
---|
[561] | 438 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 439 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
[560] | 440 | } |
---|
[561] | 441 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
| 442 | }//end loop spectra |
---|
| 443 | cycleModeCollect[*iMode] = listOfCycles; |
---|
| 444 | }//end of mode |
---|
| 445 | |
---|
| 446 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
| 447 | list<int> commonCycles; |
---|
| 448 | set_intersection(cycleModeCollect["On"].begin(), |
---|
| 449 | cycleModeCollect["On"].end(), |
---|
| 450 | cycleModeCollect["Off"].begin(), |
---|
| 451 | cycleModeCollect["Off"].end(), |
---|
| 452 | back_inserter(commonCycles) |
---|
| 453 | ); |
---|
| 454 | |
---|
| 455 | if (para.debuglev_>90){ |
---|
| 456 | cout << "Liste of cycles common to On & Off: <"; |
---|
| 457 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
| 458 | cout << *i << " "; |
---|
| 459 | } |
---|
| 460 | cout << ">" << endl; |
---|
| 461 | } |
---|
| 462 | |
---|
| 463 | // |
---|
| 464 | //Load BAO Calibration factors "per Cycle and Channels" |
---|
| 465 | //Compute the mean per Cycle to |
---|
| 466 | // fill factors "per Run and Channels" with the same cycle list |
---|
| 467 | // |
---|
| 468 | // |
---|
| 469 | //TODO improve the code.... |
---|
| 470 | |
---|
| 471 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
---|
| 472 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
---|
| 473 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
---|
| 474 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
---|
| 475 | |
---|
| 476 | string calibFileName; |
---|
| 477 | ifstream ifs; |
---|
| 478 | sa_size_t nr,nc; //values read |
---|
| 479 | |
---|
| 480 | //OFF Cycle per Channel |
---|
| 481 | calibFileName = directoryName + "/" |
---|
| 482 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
| 483 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
| 484 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 485 | ifs.open(calibFileName.c_str()); |
---|
| 486 | if ( ! ifs.is_open() ) { |
---|
| 487 | |
---|
| 488 | throw calibFileName + " cannot be opened..."; |
---|
| 489 | } |
---|
| 490 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
| 491 | if(para.debuglev_>9){ |
---|
| 492 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 493 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
[562] | 494 | cout << endl; |
---|
[561] | 495 | } |
---|
| 496 | |
---|
| 497 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
| 498 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
| 499 | {//Compute the mean |
---|
| 500 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
| 501 | double mean,sigma; |
---|
| 502 | MeanSigma(coef,mean,sigma); |
---|
| 503 | cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
| 504 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
| 505 | } |
---|
| 506 | if(para.debuglev_>9){ |
---|
| 507 | cout << "Fill calib. with mean value " << endl; |
---|
| 508 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
[562] | 509 | cout << endl; |
---|
[561] | 510 | } |
---|
| 511 | ifs.close(); |
---|
| 512 | |
---|
| 513 | // |
---|
| 514 | calibFileName = directoryName + "/" |
---|
| 515 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
| 516 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
| 517 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 518 | ifs.open(calibFileName.c_str()); |
---|
| 519 | if ( ! ifs.is_open() ) { |
---|
| 520 | |
---|
| 521 | throw calibFileName + " cannot be opened..."; |
---|
| 522 | } |
---|
| 523 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
| 524 | if(para.debuglev_>9){ |
---|
| 525 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 526 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
[562] | 527 | cout << endl; |
---|
[561] | 528 | } |
---|
| 529 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
| 530 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
| 531 | {//Compute the mean |
---|
| 532 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
| 533 | double mean,sigma; |
---|
| 534 | MeanSigma(coef,mean,sigma); |
---|
| 535 | cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
| 536 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
| 537 | } |
---|
| 538 | if(para.debuglev_>9){ |
---|
| 539 | cout << "Fill calib. with mean value " << endl; |
---|
| 540 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
[562] | 541 | cout << endl; |
---|
[561] | 542 | } |
---|
| 543 | ifs.close(); |
---|
| 544 | |
---|
| 545 | //ON Cycle per Channel |
---|
| 546 | calibFileName = directoryName + "/" |
---|
| 547 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 548 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
| 549 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 550 | ifs.open(calibFileName.c_str()); |
---|
| 551 | if ( ! ifs.is_open() ) { |
---|
| 552 | |
---|
| 553 | throw calibFileName + " cannot be opened..."; |
---|
| 554 | } |
---|
| 555 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
| 556 | if(para.debuglev_>9){ |
---|
| 557 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 558 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
[562] | 559 | cout << endl; |
---|
[561] | 560 | } |
---|
| 561 | |
---|
| 562 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
| 563 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
| 564 | {//Compute the mean |
---|
| 565 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
| 566 | double mean,sigma; |
---|
| 567 | MeanSigma(coef,mean,sigma); |
---|
| 568 | cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
| 569 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
| 570 | } |
---|
| 571 | if(para.debuglev_>9){ |
---|
| 572 | cout << "Fill calib. with mean value " << endl; |
---|
| 573 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
[562] | 574 | cout << endl; |
---|
[561] | 575 | } |
---|
| 576 | ifs.close(); |
---|
| 577 | |
---|
| 578 | |
---|
| 579 | calibFileName = directoryName + "/" |
---|
| 580 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 581 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
| 582 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 583 | ifs.open(calibFileName.c_str()); |
---|
| 584 | if ( ! ifs.is_open() ) { |
---|
| 585 | throw calibFileName + " cannot be opened..."; |
---|
| 586 | } |
---|
| 587 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
| 588 | if(para.debuglev_>9){ |
---|
| 589 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 590 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
[562] | 591 | cout << endl; |
---|
[561] | 592 | } |
---|
| 593 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
| 594 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
| 595 | {//Compute the mean |
---|
| 596 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
| 597 | double mean,sigma; |
---|
| 598 | MeanSigma(coef,mean,sigma); |
---|
| 599 | cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
| 600 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
| 601 | } |
---|
| 602 | if(para.debuglev_>9){ |
---|
| 603 | cout << "Fill calib. with mean value " << endl; |
---|
| 604 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
[562] | 605 | cout << endl; |
---|
[561] | 606 | } |
---|
| 607 | |
---|
| 608 | ifs.close(); |
---|
| 609 | |
---|
| 610 | //link <cycle> - <calibration coefficient> |
---|
[562] | 611 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
| 612 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
| 613 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
| 614 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
| 615 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
[561] | 616 | |
---|
[562] | 617 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
| 618 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
| 619 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
| 620 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
[560] | 621 | |
---|
[562] | 622 | //per Run based BAO coefficients |
---|
| 623 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
| 624 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
| 625 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
| 626 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
| 627 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
| 628 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
| 629 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
| 630 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
| 631 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
| 632 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
[560] | 633 | } |
---|
[562] | 634 | |
---|
| 635 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
| 636 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
| 637 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
| 638 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
| 639 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
| 640 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
| 641 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
| 642 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
| 643 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
| 644 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
| 645 | } |
---|
| 646 | |
---|
[560] | 647 | |
---|
| 648 | |
---|
[561] | 649 | // for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
| 650 | // meanOfSpectra(Range(iCh), Range::all()) /=calibBAOfactors(iCh); |
---|
| 651 | // } |
---|
| 652 | |
---|
| 653 | //Loop on cyles |
---|
| 654 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
[562] | 655 | |
---|
| 656 | if(para.debuglev_>9){ |
---|
| 657 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
| 658 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
| 659 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
| 660 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
| 661 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
| 662 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
| 663 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
| 664 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
| 665 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
| 666 | } |
---|
| 667 | |
---|
[561] | 668 | string ppftag; |
---|
| 669 | //load ON phase |
---|
| 670 | stringstream cycle; |
---|
| 671 | cycle << *ic; |
---|
| 672 | |
---|
| 673 | ppftag = "specRawOn"+cycle.str(); |
---|
[562] | 674 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 675 | fin.GetObject(aSpecOn,ppftag); |
---|
[561] | 676 | |
---|
[562] | 677 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
| 678 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
| 679 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
| 680 | |
---|
| 681 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
| 682 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
| 683 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
[561] | 684 | |
---|
[562] | 685 | ppftag = "specRawOff"+cycle.str(); |
---|
| 686 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 687 | fin.GetObject(aSpecOff,ppftag); |
---|
[561] | 688 | |
---|
[562] | 689 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
| 690 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
| 691 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
[561] | 692 | |
---|
[562] | 693 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
| 694 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
| 695 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
[561] | 696 | |
---|
[562] | 697 | |
---|
| 698 | //Perform the difference ON-OFF with the different calibration options |
---|
| 699 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
| 700 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
[561] | 701 | |
---|
[562] | 702 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
| 703 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
| 704 | |
---|
| 705 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
| 706 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
| 707 | |
---|
| 708 | //Fill NTuple |
---|
| 709 | xnt[0] = *ic; |
---|
| 710 | |
---|
| 711 | TVector<r_4> meanInRange_noCalib(NUMBER_OF_CHANNELS); |
---|
| 712 | meanInRange(diffOnOff_noCalib,chLow,chHigh,meanInRange_noCalib); |
---|
| 713 | xnt[1] = meanInRange_noCalib(0); |
---|
| 714 | xnt[2] = meanInRange_noCalib(1); |
---|
| 715 | |
---|
| 716 | TVector<r_4> meanInRange_perRunCalib(NUMBER_OF_CHANNELS); |
---|
| 717 | meanInRange(diffOnOff_perRunCalib,chLow,chHigh,meanInRange_perRunCalib); |
---|
| 718 | xnt[3] = meanInRange_perRunCalib(0); |
---|
| 719 | xnt[4] = meanInRange_perRunCalib(1); |
---|
| 720 | |
---|
| 721 | TVector<r_4> meanInRange_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
| 722 | meanInRange(diffOnOff_perCycleCalib,chLow,chHigh,meanInRange_perCycleCalib); |
---|
| 723 | xnt[3] = meanInRange_perCycleCalib(0); |
---|
| 724 | xnt[4] = meanInRange_perCycleCalib(1); |
---|
| 725 | |
---|
| 726 | onoffevolution.Fill(xnt); |
---|
| 727 | |
---|
[561] | 728 | totalNumberCycles++; |
---|
[562] | 729 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 730 | |
---|
[561] | 731 | }//eo loop on cycles |
---|
[562] | 732 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 733 | |
---|
| 734 | }//eo loop on spectra in a file |
---|
| 735 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
| 736 | //Normalisation |
---|
| 737 | if(totalNumberCycles>0){ |
---|
| 738 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
| 739 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
| 740 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
| 741 | } |
---|
| 742 | |
---|
| 743 | //Compute the reduced version of the mean and sigma |
---|
| 744 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 745 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 746 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
[561] | 747 | |
---|
[562] | 748 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 749 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 750 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
| 751 | |
---|
| 752 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 753 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 754 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
| 755 | |
---|
| 756 | {//save the results |
---|
| 757 | stringstream tmp; |
---|
| 758 | tmp << totalNumberCycles; |
---|
| 759 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
| 760 | POutPersist fos(fileName); |
---|
| 761 | |
---|
| 762 | string tag = "meanNoCalib"; |
---|
| 763 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
| 764 | tag = "meanPerRunCalib"; |
---|
| 765 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
| 766 | tag = "meanPerCycleCalib"; |
---|
| 767 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
| 768 | |
---|
| 769 | tag = "redmeanNoCalib"; |
---|
| 770 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
| 771 | tag = "redsigmaNoCalib"; |
---|
| 772 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
| 773 | |
---|
| 774 | tag = "redmeanPerRunCalib"; |
---|
| 775 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
| 776 | tag = "redsigmaPerRunCalib"; |
---|
| 777 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
| 778 | |
---|
| 779 | tag = "redmeanPerCycleCalib"; |
---|
| 780 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
| 781 | tag = "redsigmaPerCycleCalib"; |
---|
| 782 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
| 783 | |
---|
| 784 | tag = "onoffevol"; |
---|
| 785 | fos << PPFNameTag(tag) << onoffevolution; |
---|
| 786 | }//end of save |
---|
[560] | 787 | } |
---|
| 788 | //------------------------------------------------------- |
---|
| 789 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
[544] | 790 | //Used like: |
---|
| 791 | // |
---|
[560] | 792 | void meanRawDiffOnOffCycles() throw(string) { |
---|
[540] | 793 | list<string> listOfFiles; |
---|
| 794 | string directoryName; |
---|
| 795 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 796 | |
---|
[542] | 797 | //Make the listing of the directory |
---|
[541] | 798 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
[540] | 799 | |
---|
[541] | 800 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
[540] | 801 | iFileEnd = listOfFiles.end(); |
---|
| 802 | |
---|
[542] | 803 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
[544] | 804 | TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
[542] | 805 | uint_4 nSpectra=0; |
---|
| 806 | //Loop on files |
---|
[540] | 807 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
[542] | 808 | if (para.debuglev_>90){ |
---|
| 809 | cout << "load file <" << *iFile << ">" << endl; |
---|
| 810 | } |
---|
[540] | 811 | PInPersist fin(*iFile); |
---|
| 812 | vector<string> vec = fin.GetNameTags(); |
---|
[541] | 813 | list<string> listOfSpectra; |
---|
[542] | 814 | //Keep only required PPF objects |
---|
[540] | 815 | std::remove_copy_if( |
---|
| 816 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 817 | not1(match) |
---|
| 818 | ); |
---|
| 819 | |
---|
[560] | 820 | listOfSpectra.sort(stringCompare); |
---|
[541] | 821 | iSpecEnd = listOfSpectra.end(); |
---|
[542] | 822 | //Loop of spectra matrix |
---|
[541] | 823 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
[542] | 824 | if (para.debuglev_>90){ |
---|
| 825 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 826 | } |
---|
| 827 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 828 | fin.GetObject(aSpec,*iSpec); |
---|
| 829 | //How to see if the GetObject is ok?? Ask Reza |
---|
| 830 | nSpectra++; |
---|
[544] | 831 | meanOfSpectra+=aSpec; |
---|
[542] | 832 | }//eo loop on spectra in a file |
---|
| 833 | }//eo loop on files |
---|
| 834 | |
---|
| 835 | //Normalisation |
---|
[544] | 836 | if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
[541] | 837 | |
---|
[544] | 838 | //Compute the reduced version of the mean and sigma |
---|
| 839 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 840 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 841 | reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
| 842 | |
---|
[542] | 843 | {//Save the result |
---|
| 844 | stringstream tmp; |
---|
| 845 | tmp << nSpectra; |
---|
| 846 | string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
| 847 | cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
[544] | 848 | POutPersist fos(fileName); |
---|
| 849 | |
---|
[542] | 850 | string tag = "mean"; |
---|
[544] | 851 | fos << PPFNameTag(tag) << meanOfSpectra; |
---|
| 852 | tag = "meanred"; |
---|
| 853 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
| 854 | tag = "sigmared"; |
---|
| 855 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
| 856 | } |
---|
| 857 | } |
---|
| 858 | //------------------------------------------------------- |
---|
[560] | 859 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
[544] | 860 | //Used like: |
---|
| 861 | // |
---|
[560] | 862 | void medianRawDiffOnOffCycles() throw(string) { |
---|
[544] | 863 | list<string> listOfFiles; |
---|
| 864 | string directoryName; |
---|
| 865 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 866 | |
---|
| 867 | //Make the listing of the directory |
---|
| 868 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
| 869 | |
---|
| 870 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
| 871 | iFileEnd = listOfFiles.end(); |
---|
| 872 | |
---|
| 873 | |
---|
[562] | 874 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
[544] | 875 | |
---|
| 876 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
| 877 | uint_4 nSpectra=0; |
---|
| 878 | //Loop on files |
---|
| 879 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 880 | if (para.debuglev_>90){ |
---|
| 881 | cout << "load file <" << *iFile << ">" << endl; |
---|
| 882 | } |
---|
| 883 | PInPersist fin(*iFile); |
---|
| 884 | vector<string> vec = fin.GetNameTags(); |
---|
| 885 | list<string> listOfSpectra; |
---|
| 886 | //Keep only required PPF objects |
---|
| 887 | std::remove_copy_if( |
---|
| 888 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 889 | not1(match) |
---|
| 890 | ); |
---|
| 891 | |
---|
[560] | 892 | listOfSpectra.sort(stringCompare); |
---|
[544] | 893 | iSpecEnd = listOfSpectra.end(); |
---|
| 894 | //Loop of spectra matrix |
---|
[562] | 895 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
[544] | 896 | if (para.debuglev_>90){ |
---|
| 897 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 898 | } |
---|
| 899 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 900 | fin.GetObject(aSpec,*iSpec); |
---|
| 901 | |
---|
[553] | 902 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
| 903 | |
---|
[544] | 904 | nSpectra++; |
---|
| 905 | }//eo loop on spectra in a file |
---|
| 906 | }//eo loop on files |
---|
| 907 | |
---|
| 908 | |
---|
| 909 | |
---|
| 910 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 911 | //Compute the median for each freq. and Channel |
---|
| 912 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 913 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
[552] | 914 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
[544] | 915 | vector<r_4> tmp; |
---|
| 916 | tmp0.FillTo(tmp); |
---|
[552] | 917 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
[544] | 918 | } |
---|
| 919 | } |
---|
| 920 | |
---|
| 921 | |
---|
| 922 | //Compute the reduced version of the mean and sigma |
---|
| 923 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 924 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 925 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
| 926 | |
---|
[553] | 927 | |
---|
[562] | 928 | sa_size_t f1320=freqToChan(1320.); |
---|
| 929 | sa_size_t f1345=freqToChan(1345.); |
---|
| 930 | sa_size_t f1355=freqToChan(1355.); |
---|
| 931 | sa_size_t f1380=freqToChan(1380.); |
---|
[553] | 932 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
| 933 | if (para.debuglev_>9){ |
---|
| 934 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
| 935 | } |
---|
| 936 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
| 937 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 938 | double meanMed1; |
---|
| 939 | double sigmaMed1; |
---|
| 940 | TVector<r_4> band1; |
---|
| 941 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
| 942 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
| 943 | double meanMed2; |
---|
| 944 | double sigmaMed2; |
---|
| 945 | TVector<r_4> band2; |
---|
| 946 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
| 947 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
| 948 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
| 949 | } |
---|
| 950 | meanMed.Print(cout); |
---|
[562] | 951 | cout << endl; |
---|
| 952 | |
---|
[553] | 953 | |
---|
| 954 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
| 955 | if (para.debuglev_>9){ |
---|
| 956 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
| 957 | } |
---|
| 958 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
[560] | 959 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
| 960 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
[553] | 961 | |
---|
| 962 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 963 | double meanSigma; |
---|
| 964 | double sigmaSigma; |
---|
| 965 | TVector<r_4> band; |
---|
| 966 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
| 967 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
| 968 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
| 969 | sigmaMed(iCh) = meanSigma; |
---|
| 970 | } |
---|
| 971 | sigmaMed.Print(cout); |
---|
[562] | 972 | cout << endl; |
---|
| 973 | |
---|
[553] | 974 | |
---|
| 975 | |
---|
| 976 | if (para.debuglev_>9){ |
---|
| 977 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
| 978 | } |
---|
| 979 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
| 980 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 981 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
| 982 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
| 983 | } |
---|
| 984 | |
---|
| 985 | |
---|
| 986 | |
---|
[544] | 987 | {//Save the result |
---|
| 988 | stringstream tmp; |
---|
| 989 | tmp << nSpectra; |
---|
| 990 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
[552] | 991 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
[542] | 992 | POutPersist fos(fileName); |
---|
[544] | 993 | |
---|
| 994 | string tag = "median"; |
---|
| 995 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
[553] | 996 | |
---|
| 997 | tag = "medianNorm"; |
---|
| 998 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
| 999 | |
---|
| 1000 | |
---|
[544] | 1001 | tag = "meanmedred"; |
---|
| 1002 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
| 1003 | tag = "sigmamedred"; |
---|
| 1004 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
[552] | 1005 | tag = "cycleVsfreq"; |
---|
| 1006 | |
---|
| 1007 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
| 1008 | fos << PPFNameTag(tag) << tarr; |
---|
[540] | 1009 | } |
---|
| 1010 | } |
---|
[544] | 1011 | |
---|
[540] | 1012 | //------------------------------------------------------- |
---|
[544] | 1013 | int main(int narg, char* arg[]) { |
---|
[540] | 1014 | |
---|
| 1015 | int rc = 0; //return code |
---|
| 1016 | string msg; //message used in Exceptions |
---|
| 1017 | |
---|
| 1018 | |
---|
[544] | 1019 | |
---|
| 1020 | //default value for initial parameters (see Para structure on top of the file) |
---|
[540] | 1021 | string debuglev = "0"; |
---|
[544] | 1022 | string action = "meanDiffOnOff"; |
---|
[540] | 1023 | string inputPath = "."; |
---|
| 1024 | string outputPath = "."; |
---|
| 1025 | string sourceName = "Abell85"; |
---|
[541] | 1026 | string ppfFile; |
---|
[544] | 1027 | string nSliceInFreq = "32"; |
---|
[560] | 1028 | string typeOfCalib="perRun"; |
---|
[561] | 1029 | string calibFreq = "1346"; |
---|
[562] | 1030 | string calibBandFreq="6.25"; |
---|
| 1031 | string mxcycles; |
---|
| 1032 | |
---|
[540] | 1033 | // bool okarg=false; |
---|
| 1034 | int ka=1; |
---|
[554] | 1035 | while (ka<narg) { |
---|
[551] | 1036 | if (strcmp(arg[ka],"-h")==0) { |
---|
[560] | 1037 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
[562] | 1038 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
---|
[561] | 1039 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
[562] | 1040 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
[551] | 1041 | << " -src [Abell85]\n -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
| 1042 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
| 1043 | << " -outPath [.]|<dir of the output> \n" |
---|
| 1044 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
[561] | 1045 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
[551] | 1046 | << " -debug <level> " |
---|
| 1047 | << endl; |
---|
| 1048 | return 0; |
---|
| 1049 | } |
---|
| 1050 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
[540] | 1051 | debuglev=arg[ka+1]; |
---|
| 1052 | ka+=2; |
---|
| 1053 | } |
---|
| 1054 | else if (strcmp(arg[ka],"-act")==0) { |
---|
| 1055 | action=arg[ka+1]; |
---|
| 1056 | ka+=2; |
---|
| 1057 | } |
---|
[561] | 1058 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
| 1059 | calibFreq=arg[ka+1]; |
---|
| 1060 | ka+=2; |
---|
| 1061 | } |
---|
[562] | 1062 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
| 1063 | calibBandFreq=arg[ka+1]; |
---|
| 1064 | ka+=2; |
---|
| 1065 | } |
---|
| 1066 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
| 1067 | mxcycles=arg[ka+1]; |
---|
| 1068 | ka+=2; |
---|
| 1069 | } |
---|
[540] | 1070 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
| 1071 | inputPath=arg[ka+1]; |
---|
| 1072 | ka+=2; |
---|
| 1073 | } |
---|
| 1074 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
| 1075 | outputPath=arg[ka+1]; |
---|
| 1076 | ka+=2; |
---|
| 1077 | } |
---|
[541] | 1078 | else if (strcmp(arg[ka],"-src")==0) { |
---|
[540] | 1079 | sourceName=arg[ka+1]; |
---|
| 1080 | ka+=2; |
---|
| 1081 | } |
---|
[541] | 1082 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
| 1083 | ppfFile=arg[ka+1]; |
---|
[540] | 1084 | ka+=2; |
---|
| 1085 | } |
---|
[544] | 1086 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
| 1087 | nSliceInFreq=arg[ka+1]; |
---|
| 1088 | ka+=2; |
---|
| 1089 | } |
---|
[540] | 1090 | else ka++; |
---|
| 1091 | }//eo while |
---|
| 1092 | |
---|
[544] | 1093 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
| 1094 | para.inPath_ = inputPath; |
---|
| 1095 | para.outPath_ = outputPath; |
---|
[540] | 1096 | para.sourceName_ = sourceName; |
---|
[544] | 1097 | para.ppfFile_ = ppfFile; |
---|
| 1098 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
[561] | 1099 | para.calibFreq_ = calibFreq; |
---|
[562] | 1100 | para.calibBandFreq_ = calibBandFreq; |
---|
| 1101 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
| 1102 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
| 1103 | if (mxcycles != "") { |
---|
| 1104 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
| 1105 | } else { |
---|
| 1106 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
| 1107 | } |
---|
[540] | 1108 | |
---|
| 1109 | cout << "Dump Initial parameters ............" << endl; |
---|
| 1110 | cout << " action = " << action << "\n" |
---|
[562] | 1111 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
[544] | 1112 | << " inputPath = " << para.inPath_ << "\n" |
---|
| 1113 | << " outputPath = " << para.outPath_ << "\n" |
---|
| 1114 | << " sourceName = " << para.sourceName_ << "\n" |
---|
| 1115 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
| 1116 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
[561] | 1117 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
[562] | 1118 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
[544] | 1119 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
[540] | 1120 | cout << "...................................." << endl; |
---|
| 1121 | |
---|
[541] | 1122 | if ( "" == ppfFile ) { |
---|
[560] | 1123 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
[541] | 1124 | << endl; |
---|
| 1125 | return 999; |
---|
| 1126 | } |
---|
| 1127 | |
---|
| 1128 | |
---|
[540] | 1129 | try { |
---|
| 1130 | |
---|
[542] | 1131 | // int b,e; |
---|
| 1132 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
| 1133 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
[540] | 1134 | |
---|
[560] | 1135 | if ( action == "meanRawDiffOnOff" ) { |
---|
| 1136 | meanRawDiffOnOffCycles(); |
---|
| 1137 | } else if (action == "medianRawDiffOnOff") { |
---|
| 1138 | medianRawDiffOnOffCycles(); |
---|
| 1139 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
| 1140 | meanCalibBAODiffOnOffCycles(); |
---|
[544] | 1141 | } else { |
---|
| 1142 | msg = "Unknown action " + action; |
---|
| 1143 | throw msg; |
---|
[540] | 1144 | } |
---|
| 1145 | |
---|
[544] | 1146 | |
---|
[540] | 1147 | } catch (std::exception& sex) { |
---|
| 1148 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
| 1149 | << "\n msg= " << sex.what() << endl; |
---|
| 1150 | rc = 78; |
---|
| 1151 | } |
---|
| 1152 | catch ( string str ) { |
---|
| 1153 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
| 1154 | } |
---|
| 1155 | catch (...) { |
---|
| 1156 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
| 1157 | rc = 79; |
---|
| 1158 | } |
---|
| 1159 | |
---|
| 1160 | return 0; |
---|
| 1161 | |
---|
| 1162 | } |
---|