[540] | 1 | // Utilisation de SOPHYA pour faciliter les tests ... |
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| 2 | #include "sopnamsp.h" |
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| 3 | #include "machdefs.h" |
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| 4 | #include <dirent.h> |
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| 5 | #include <matharr.h> |
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| 6 | |
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| 7 | // include standard c/c++ |
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[562] | 8 | #include <regex.h> |
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| 9 | #include <stdio.h> |
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| 10 | #include <stdlib.h> |
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| 11 | #include <limits> |
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[540] | 12 | #include <iostream> |
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| 13 | #include <fstream> |
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| 14 | #include <string> |
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| 15 | #include <vector> |
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| 16 | #include <map> |
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| 17 | #include <functional> |
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| 18 | #include <algorithm> |
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| 19 | #include <numeric> |
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| 20 | #include <list> |
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| 21 | #include <exception> |
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| 22 | |
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| 23 | // include sophya mesure ressource CPU/memoire ... |
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| 24 | #include "resusage.h" |
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| 25 | #include "ctimer.h" |
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| 26 | #include "timing.h" |
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| 27 | #include "timestamp.h" |
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| 28 | #include "strutilxx.h" |
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| 29 | #include "ntuple.h" |
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| 30 | #include "fioarr.h" |
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| 31 | #include "tarrinit.h" |
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| 32 | #include "histinit.h" |
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| 33 | #include "fitsioserver.h" |
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| 34 | #include "fiosinit.h" |
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| 35 | #include "ppersist.h" |
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| 36 | |
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| 37 | //----------------------------------------------- |
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[563] | 38 | //Usage |
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| 39 | // |
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| 40 | // ./Objs/mergeAnaFiles -act meanCalibBAODiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src Abell85 -ppfFile dataRaw -debug 1 -mxcycles 500 |
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| 41 | // |
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| 42 | // |
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| 43 | // |
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| 44 | //----------------------------------------------- |
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[542] | 45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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[544] | 46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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[560] | 47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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| 48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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[544] | 49 | //Input parameters |
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| 50 | struct Param { |
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| 51 | int debuglev_; //debug |
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| 52 | string inPath_; //root directory of the input files |
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| 53 | string outPath_; //output files are located here |
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| 54 | string sourceName_; //source name & subdirectory of the input files |
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| 55 | string ppfFile_; //generic name of the input files |
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| 56 | int nSliceInFreq_; //used by reduceSpectra() fnc |
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[561] | 57 | string calibFreq_; //freq. value used for calibration |
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[562] | 58 | r_4 rcalibFreq_; //float version |
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| 59 | string calibBandFreq_; //band of freq. used for calibration |
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| 60 | r_4 rcalibBandFreq_; //float version |
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| 61 | int maxNumberCycles_;//maximum number of cycles to be treated |
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[544] | 62 | } para; |
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| 63 | //-------------------------------------------------------------- |
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| 64 | //Utility functions |
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[552] | 65 | |
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[562] | 66 | sa_size_t freqToChan(r_4 f){ |
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[553] | 67 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
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| 68 | } |
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[562] | 69 | //-------- |
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| 70 | //COMPUTE the mean value on a freq. range for all channels |
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| 71 | //-------- |
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| 72 | void meanInRange(const TMatrix<r_4> mtx, |
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| 73 | sa_size_t chLow, |
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| 74 | sa_size_t chHigh, |
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| 75 | TVector<r_4>& vec){ |
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[563] | 76 | |
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[562] | 77 | sa_size_t nr = mtx.NRows(); |
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[563] | 78 | |
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[562] | 79 | for (sa_size_t ir=0; ir<nr; ir++){ |
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| 80 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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| 81 | double mean, sigma; |
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| 82 | MeanSigma(tmp,mean,sigma); |
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| 83 | vec(ir) = mean; |
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| 84 | } |
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| 85 | } |
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[553] | 86 | //--------- |
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[561] | 87 | class median_of_empty_list_exception:public std::exception{ |
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[552] | 88 | virtual const char* what() const throw() { |
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| 89 | return "Attempt to take the median of an empty list of numbers. " |
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| 90 | "The median of an empty list is undefined."; |
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| 91 | } |
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| 92 | }; |
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| 93 | template<class RandAccessIter> |
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| 94 | double median(RandAccessIter begin, RandAccessIter end) |
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| 95 | throw(median_of_empty_list_exception){ |
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| 96 | if(begin == end){ throw median_of_empty_list_exception(); } |
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| 97 | std::size_t size = end - begin; |
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| 98 | std::size_t middleIdx = size/2; |
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| 99 | RandAccessIter target = begin + middleIdx; |
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| 100 | std::nth_element(begin, target, end); |
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| 101 | |
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| 102 | if(size % 2 != 0){ //Odd number of elements |
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| 103 | return *target; |
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| 104 | }else{ //Even number of elements |
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| 105 | double a = *target; |
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| 106 | RandAccessIter targetNeighbor= target-1; |
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| 107 | std::nth_element(begin, targetNeighbor, end); |
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| 108 | return (a+*targetNeighbor)/2.0; |
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| 109 | } |
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| 110 | } |
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| 111 | |
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[561] | 112 | //------------- |
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| 113 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
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| 114 | // Skip delimiters at beginning. |
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| 115 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
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| 116 | // Find first "non-delimiter". |
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| 117 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
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| 118 | |
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| 119 | while (string::npos != pos || string::npos != lastPos) |
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| 120 | { |
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| 121 | // Found a token, add it to the vector. |
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| 122 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
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| 123 | // Skip delimiters. Note the "not_of" |
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| 124 | lastPos = str.find_first_not_of(delimiters, pos); |
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| 125 | // Find next "non-delimiter" |
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| 126 | pos = str.find_first_of(delimiters, lastPos); |
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| 127 | } |
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| 128 | } |
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[544] | 129 | //-------------------------------------------------------------- |
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[540] | 130 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
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| 131 | int i, w=0, len; |
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| 132 | char *word = NULL; |
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| 133 | regex_t rgT; |
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| 134 | regmatch_t match; |
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| 135 | regcomp(&rgT,patrn,REG_EXTENDED); |
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| 136 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
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| 137 | *begin = (int)match.rm_so; |
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| 138 | *end = (int)match.rm_eo; |
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| 139 | len = *end-*begin; |
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| 140 | word=(char*)malloc(len+1); |
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| 141 | for (i=*begin; i<*end; i++) { |
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| 142 | word[w] = string[i]; |
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| 143 | w++; } |
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| 144 | word[w]=0; |
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| 145 | } |
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| 146 | regfree(&rgT); |
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| 147 | return word; |
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| 148 | } |
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[544] | 149 | //------- |
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[540] | 150 | sa_size_t round_sa(r_4 r) { |
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| 151 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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| 152 | } |
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| 153 | //----- |
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| 154 | string StringToLower(string strToConvert){ |
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| 155 | //change each element of the string to lower case |
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| 156 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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| 157 | strToConvert[i] = tolower(strToConvert[i]); |
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| 158 | } |
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| 159 | return strToConvert;//return the converted string |
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| 160 | } |
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| 161 | //----- |
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| 162 | bool stringCompare( const string &left, const string &right ){ |
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| 163 | if( left.size() < right.size() ) |
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| 164 | return true; |
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| 165 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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| 166 | if( tolower( *lit ) < tolower( *rit ) ) |
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| 167 | return true; |
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| 168 | else if( tolower( *lit ) > tolower( *rit ) ) |
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| 169 | return false; |
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| 170 | return false; |
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| 171 | } |
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| 172 | //----- |
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| 173 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
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| 174 | list<string> theList; |
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| 175 | |
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| 176 | |
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| 177 | DIR *dip; |
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| 178 | struct dirent *dit; |
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| 179 | string msg; string fileName; |
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| 180 | string fullFileName; |
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| 181 | size_t found; |
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| 182 | |
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| 183 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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| 184 | msg = "opendir failed on directory "+dir; |
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| 185 | throw msg; |
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| 186 | } |
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| 187 | while ( (dit = readdir(dip)) != NULL ) { |
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| 188 | fileName = dit->d_name; |
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| 189 | found=fileName.find(filePettern); |
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| 190 | if (found != string::npos) { |
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| 191 | fullFileName = dir + "/"; |
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| 192 | fullFileName += fileName; |
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| 193 | theList.push_back(fullFileName); |
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| 194 | } |
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| 195 | }//eo while |
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| 196 | if (closedir(dip) == -1) { |
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| 197 | msg = "closedir failed on directory "+dir; |
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| 198 | throw msg; |
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| 199 | } |
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| 200 | |
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| 201 | theList.sort(stringCompare); |
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| 202 | |
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| 203 | return theList; |
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| 204 | |
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| 205 | } |
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| 206 | // |
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| 207 | class StringMatch : public unary_function<string,bool> { |
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| 208 | public: |
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| 209 | StringMatch(const string& pattern): pattern_(pattern){} |
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| 210 | bool operator()(const string& aStr) const { |
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| 211 | |
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| 212 | |
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| 213 | int b,e; |
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| 214 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
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| 215 | |
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[541] | 216 | // cout << "investigate " << aStr << " to find " << pattern_ |
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| 217 | // << "[" <<b<<","<<e<<"]" |
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| 218 | // << endl; |
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[540] | 219 | |
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| 220 | |
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| 221 | if (b != 0) return false; |
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[544] | 222 | if (e != (int)aStr.size()) return false; |
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[540] | 223 | return true; |
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| 224 | |
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| 225 | } |
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| 226 | private: |
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| 227 | string pattern_; |
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| 228 | }; |
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| 229 | //------------------------------------------------------- |
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[544] | 230 | //Rebin in frequence + compute mean and sigma |
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| 231 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
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| 232 | TMatrix<r_4>& meanMtx, |
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| 233 | TMatrix<r_4>& sigmaMtx) { |
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| 234 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
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| 235 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
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| 236 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
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| 237 | sa_size_t freqLow= iSlice*deltaFreq; |
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| 238 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
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| 239 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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| 240 | TVector<r_4> reducedRow; |
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| 241 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
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| 242 | double mean; |
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| 243 | double sigma; |
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| 244 | MeanSigma(reducedRow,mean,sigma); |
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| 245 | meanMtx(iCh,iSlice) = mean; |
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| 246 | sigmaMtx(iCh,iSlice) = sigma; |
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| 247 | }//eo loop on channels |
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| 248 | }//eo loop on slices |
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| 249 | } |
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[541] | 250 | //------------------------------------------------------- |
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[560] | 251 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
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| 252 | // |
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| 253 | void meanCalibBAODiffOnOffCycles() throw(string) { |
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| 254 | |
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| 255 | list<string> listOfFiles; |
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| 256 | string directoryName; |
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| 257 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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| 258 | |
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| 259 | //Make the listing of the directory |
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| 260 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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| 261 | |
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[561] | 262 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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[560] | 263 | iFileEnd = listOfFiles.end(); |
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[561] | 264 | |
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[562] | 265 | //mean ON-OFF over the list of cycles |
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| 266 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 267 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 268 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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| 269 | char* onffTupleName[7]={"cycle", |
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[563] | 270 | "onoffRaw0","onoffRaw1", |
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| 271 | "onoffRun0","onoffRun1", |
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| 272 | "onoffCycle0","onoffCycle1"}; |
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[562] | 273 | NTuple onoffevolution(7,onffTupleName); |
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| 274 | r_4 xnt[7]; |
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| 275 | |
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| 276 | //Lower and Higher freq. bin to perform mean follow up |
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[563] | 277 | sa_size_t chLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
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[562] | 278 | sa_size_t chHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
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[563] | 279 | if (para.debuglev_>90){ |
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| 280 | cout << "freq. band for follow up [" << chLow << ", "<< chHigh << "]" << endl; |
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| 281 | } |
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[562] | 282 | |
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[561] | 283 | //Loop on files/run |
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[562] | 284 | |
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| 285 | int totalNumberCycles=0; //total number of cycles for normalisation |
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[560] | 286 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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| 287 | if (para.debuglev_>90){ |
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| 288 | cout << "load file <" << *iFile << ">" << endl; |
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| 289 | } |
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[561] | 290 | |
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| 291 | vector<string> tokens; |
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| 292 | split(*iFile,"_",tokens); |
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| 293 | string dateOfRun = tokens[1]; |
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| 294 | if (para.debuglev_>90){ |
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| 295 | cout << "date <" << dateOfRun << ">" << endl; |
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| 296 | } |
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| 297 | vector<string> tokens2; |
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| 298 | split(tokens[2],".",tokens2); |
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| 299 | string srcLower = tokens2[0]; |
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| 300 | |
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| 301 | |
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| 302 | |
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[560] | 303 | PInPersist fin(*iFile); |
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| 304 | vector<string> vec = fin.GetNameTags(); |
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| 305 | |
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[561] | 306 | vector<string> modeList; |
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| 307 | modeList.push_back("On"); |
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| 308 | modeList.push_back("Off"); |
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| 309 | vector<string>::const_iterator iMode; |
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| 310 | |
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| 311 | map<string, list<int> > cycleModeCollect; |
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| 312 | |
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| 313 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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| 314 | list<string> listOfSpectra; |
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[560] | 315 | //Keep only required PPF objects |
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[561] | 316 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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[560] | 317 | std::remove_copy_if( |
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| 318 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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[561] | 319 | not1(StringMatch(matchstr)) |
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[560] | 320 | ); |
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| 321 | |
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[561] | 322 | listOfSpectra.sort(stringCompare); |
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| 323 | iSpecEnd = listOfSpectra.end(); |
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[560] | 324 | |
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[561] | 325 | matchstr = "[0-9]+"; |
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[560] | 326 | //Loop of spectra matrix |
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[561] | 327 | list<int> listOfCycles; |
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| 328 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
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| 329 | int b,e; |
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| 330 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
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[560] | 331 | if (para.debuglev_>90){ |
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[561] | 332 | cout << " spactra <" << *iSpec << ">" << endl; |
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| 333 | cout << " cycle " << iSpec->substr(b) << endl; |
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[560] | 334 | } |
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[561] | 335 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
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| 336 | }//end loop spectra |
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| 337 | cycleModeCollect[*iMode] = listOfCycles; |
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| 338 | }//end of mode |
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| 339 | |
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| 340 | //Take the Intersection of the list Of cycles in mode Off and On |
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| 341 | list<int> commonCycles; |
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| 342 | set_intersection(cycleModeCollect["On"].begin(), |
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| 343 | cycleModeCollect["On"].end(), |
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| 344 | cycleModeCollect["Off"].begin(), |
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| 345 | cycleModeCollect["Off"].end(), |
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| 346 | back_inserter(commonCycles) |
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| 347 | ); |
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| 348 | |
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| 349 | if (para.debuglev_>90){ |
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| 350 | cout << "Liste of cycles common to On & Off: <"; |
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| 351 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
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| 352 | cout << *i << " "; |
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| 353 | } |
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| 354 | cout << ">" << endl; |
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| 355 | } |
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| 356 | |
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| 357 | // |
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| 358 | //Load BAO Calibration factors "per Cycle and Channels" |
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| 359 | //Compute the mean per Cycle to |
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| 360 | // fill factors "per Run and Channels" with the same cycle list |
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| 361 | // |
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| 362 | // |
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| 363 | //TODO improve the code.... |
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| 364 | |
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| 365 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
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| 366 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
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| 367 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
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| 368 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
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| 369 | |
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| 370 | string calibFileName; |
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| 371 | ifstream ifs; |
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| 372 | sa_size_t nr,nc; //values read |
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| 373 | |
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| 374 | //OFF Cycle per Channel |
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| 375 | calibFileName = directoryName + "/" |
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| 376 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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| 377 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
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| 378 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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| 379 | ifs.open(calibFileName.c_str()); |
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| 380 | if ( ! ifs.is_open() ) { |
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| 381 | |
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| 382 | throw calibFileName + " cannot be opened..."; |
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| 383 | } |
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| 384 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
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| 385 | if(para.debuglev_>9){ |
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| 386 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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| 387 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
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[562] | 388 | cout << endl; |
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[561] | 389 | } |
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| 390 | |
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| 391 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
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| 392 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
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| 393 | {//Compute the mean |
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| 394 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
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| 395 | double mean,sigma; |
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| 396 | MeanSigma(coef,mean,sigma); |
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| 397 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
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| 398 | } |
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| 399 | if(para.debuglev_>9){ |
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| 400 | cout << "Fill calib. with mean value " << endl; |
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| 401 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
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[562] | 402 | cout << endl; |
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[561] | 403 | } |
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| 404 | ifs.close(); |
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| 405 | |
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| 406 | // |
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| 407 | calibFileName = directoryName + "/" |
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| 408 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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| 409 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
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| 410 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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| 411 | ifs.open(calibFileName.c_str()); |
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| 412 | if ( ! ifs.is_open() ) { |
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| 413 | |
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| 414 | throw calibFileName + " cannot be opened..."; |
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| 415 | } |
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| 416 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
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| 417 | if(para.debuglev_>9){ |
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| 418 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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| 419 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
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[562] | 420 | cout << endl; |
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[561] | 421 | } |
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| 422 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
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| 423 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
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| 424 | {//Compute the mean |
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| 425 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
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| 426 | double mean,sigma; |
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| 427 | MeanSigma(coef,mean,sigma); |
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[563] | 428 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
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[561] | 429 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
| 430 | } |
---|
| 431 | if(para.debuglev_>9){ |
---|
| 432 | cout << "Fill calib. with mean value " << endl; |
---|
| 433 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
[562] | 434 | cout << endl; |
---|
[561] | 435 | } |
---|
| 436 | ifs.close(); |
---|
| 437 | |
---|
| 438 | //ON Cycle per Channel |
---|
| 439 | calibFileName = directoryName + "/" |
---|
| 440 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 441 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
| 442 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 443 | ifs.open(calibFileName.c_str()); |
---|
| 444 | if ( ! ifs.is_open() ) { |
---|
| 445 | |
---|
| 446 | throw calibFileName + " cannot be opened..."; |
---|
| 447 | } |
---|
| 448 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
| 449 | if(para.debuglev_>9){ |
---|
| 450 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 451 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
[562] | 452 | cout << endl; |
---|
[561] | 453 | } |
---|
| 454 | |
---|
| 455 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
| 456 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
| 457 | {//Compute the mean |
---|
| 458 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
| 459 | double mean,sigma; |
---|
| 460 | MeanSigma(coef,mean,sigma); |
---|
[563] | 461 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
[561] | 462 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
| 463 | } |
---|
| 464 | if(para.debuglev_>9){ |
---|
| 465 | cout << "Fill calib. with mean value " << endl; |
---|
| 466 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
[562] | 467 | cout << endl; |
---|
[561] | 468 | } |
---|
| 469 | ifs.close(); |
---|
| 470 | |
---|
| 471 | |
---|
| 472 | calibFileName = directoryName + "/" |
---|
| 473 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 474 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
| 475 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 476 | ifs.open(calibFileName.c_str()); |
---|
| 477 | if ( ! ifs.is_open() ) { |
---|
| 478 | throw calibFileName + " cannot be opened..."; |
---|
| 479 | } |
---|
| 480 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
| 481 | if(para.debuglev_>9){ |
---|
| 482 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 483 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
[562] | 484 | cout << endl; |
---|
[561] | 485 | } |
---|
| 486 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
| 487 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
| 488 | {//Compute the mean |
---|
| 489 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
| 490 | double mean,sigma; |
---|
| 491 | MeanSigma(coef,mean,sigma); |
---|
[563] | 492 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
[561] | 493 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
| 494 | } |
---|
| 495 | if(para.debuglev_>9){ |
---|
| 496 | cout << "Fill calib. with mean value " << endl; |
---|
| 497 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
[562] | 498 | cout << endl; |
---|
[561] | 499 | } |
---|
| 500 | |
---|
| 501 | ifs.close(); |
---|
| 502 | |
---|
| 503 | //link <cycle> - <calibration coefficient> |
---|
[562] | 504 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
| 505 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
| 506 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
| 507 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
| 508 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
[561] | 509 | |
---|
[562] | 510 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
| 511 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
| 512 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
| 513 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
[560] | 514 | |
---|
[562] | 515 | //per Run based BAO coefficients |
---|
| 516 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
| 517 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
[563] | 518 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
| 519 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
| 520 | |
---|
[562] | 521 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
| 522 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
| 523 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
| 524 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
| 525 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
| 526 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
| 527 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
| 528 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
[563] | 529 | }//eo loop on coef Off |
---|
[562] | 530 | |
---|
| 531 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
| 532 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
| 533 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
| 534 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
| 535 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
| 536 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
| 537 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
| 538 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
| 539 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
| 540 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
[563] | 541 | }//eo loop on coef On |
---|
[562] | 542 | |
---|
[561] | 543 | //Loop on cyles |
---|
| 544 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
[562] | 545 | |
---|
[563] | 546 | //Look if the cycle has been calibrated... |
---|
| 547 | bool isCycleCalibrated = |
---|
| 548 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
| 549 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
| 550 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
| 551 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
| 552 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
| 553 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
| 554 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
| 555 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
| 556 | |
---|
| 557 | if(para.debuglev_>9) { |
---|
[562] | 558 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
[563] | 559 | if (isCycleCalibrated) { |
---|
| 560 | cout << "Cycle calibrated " << endl; |
---|
| 561 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
| 562 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
| 563 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
| 564 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
| 565 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
| 566 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
| 567 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
| 568 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
| 569 | } else { |
---|
| 570 | cout << "Cycle NOT calibrated " << endl; |
---|
| 571 | } |
---|
| 572 | }//debug |
---|
| 573 | |
---|
| 574 | |
---|
| 575 | if ( ! isCycleCalibrated ) continue; |
---|
[562] | 576 | |
---|
[561] | 577 | string ppftag; |
---|
| 578 | //load ON phase |
---|
| 579 | stringstream cycle; |
---|
| 580 | cycle << *ic; |
---|
| 581 | |
---|
| 582 | ppftag = "specRawOn"+cycle.str(); |
---|
[562] | 583 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 584 | fin.GetObject(aSpecOn,ppftag); |
---|
[561] | 585 | |
---|
[562] | 586 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
| 587 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
| 588 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
| 589 | |
---|
| 590 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
| 591 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
| 592 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
[561] | 593 | |
---|
[562] | 594 | ppftag = "specRawOff"+cycle.str(); |
---|
| 595 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 596 | fin.GetObject(aSpecOff,ppftag); |
---|
[561] | 597 | |
---|
[562] | 598 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
| 599 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
| 600 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
[561] | 601 | |
---|
[562] | 602 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
| 603 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
| 604 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
[561] | 605 | |
---|
[562] | 606 | |
---|
| 607 | //Perform the difference ON-OFF with the different calibration options |
---|
| 608 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
| 609 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
[561] | 610 | |
---|
[562] | 611 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
| 612 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
| 613 | |
---|
| 614 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
| 615 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
| 616 | |
---|
[563] | 617 | // |
---|
| 618 | totalNumberCycles++; |
---|
[562] | 619 | //Fill NTuple |
---|
[563] | 620 | xnt[0] = totalNumberCycles; |
---|
[562] | 621 | |
---|
| 622 | TVector<r_4> meanInRange_noCalib(NUMBER_OF_CHANNELS); |
---|
| 623 | meanInRange(diffOnOff_noCalib,chLow,chHigh,meanInRange_noCalib); |
---|
| 624 | xnt[1] = meanInRange_noCalib(0); |
---|
| 625 | xnt[2] = meanInRange_noCalib(1); |
---|
| 626 | |
---|
| 627 | TVector<r_4> meanInRange_perRunCalib(NUMBER_OF_CHANNELS); |
---|
| 628 | meanInRange(diffOnOff_perRunCalib,chLow,chHigh,meanInRange_perRunCalib); |
---|
| 629 | xnt[3] = meanInRange_perRunCalib(0); |
---|
| 630 | xnt[4] = meanInRange_perRunCalib(1); |
---|
| 631 | |
---|
| 632 | TVector<r_4> meanInRange_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
| 633 | meanInRange(diffOnOff_perCycleCalib,chLow,chHigh,meanInRange_perCycleCalib); |
---|
[563] | 634 | xnt[5] = meanInRange_perCycleCalib(0); |
---|
| 635 | xnt[6] = meanInRange_perCycleCalib(1); |
---|
[562] | 636 | |
---|
| 637 | onoffevolution.Fill(xnt); |
---|
| 638 | |
---|
[563] | 639 | //Quit if enough |
---|
[562] | 640 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 641 | |
---|
[561] | 642 | }//eo loop on cycles |
---|
[562] | 643 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 644 | |
---|
| 645 | }//eo loop on spectra in a file |
---|
| 646 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
| 647 | //Normalisation |
---|
[563] | 648 | if(totalNumberCycles > 0){ |
---|
[562] | 649 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
| 650 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
| 651 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
| 652 | } |
---|
| 653 | |
---|
| 654 | //Compute the reduced version of the mean and sigma |
---|
| 655 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 656 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 657 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
[561] | 658 | |
---|
[562] | 659 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 660 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 661 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
| 662 | |
---|
| 663 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 664 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 665 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
| 666 | |
---|
| 667 | {//save the results |
---|
| 668 | stringstream tmp; |
---|
| 669 | tmp << totalNumberCycles; |
---|
| 670 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
[563] | 671 | |
---|
[562] | 672 | POutPersist fos(fileName); |
---|
[563] | 673 | cout << "Save output in " << fileName << endl; |
---|
[562] | 674 | |
---|
| 675 | string tag = "meanNoCalib"; |
---|
| 676 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
| 677 | tag = "meanPerRunCalib"; |
---|
| 678 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
| 679 | tag = "meanPerCycleCalib"; |
---|
| 680 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
| 681 | |
---|
| 682 | tag = "redmeanNoCalib"; |
---|
| 683 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
| 684 | tag = "redsigmaNoCalib"; |
---|
| 685 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
| 686 | |
---|
| 687 | tag = "redmeanPerRunCalib"; |
---|
| 688 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
| 689 | tag = "redsigmaPerRunCalib"; |
---|
| 690 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
| 691 | |
---|
| 692 | tag = "redmeanPerCycleCalib"; |
---|
| 693 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
| 694 | tag = "redsigmaPerCycleCalib"; |
---|
| 695 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
| 696 | |
---|
| 697 | tag = "onoffevol"; |
---|
| 698 | fos << PPFNameTag(tag) << onoffevolution; |
---|
| 699 | }//end of save |
---|
[560] | 700 | } |
---|
| 701 | //------------------------------------------------------- |
---|
| 702 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
[544] | 703 | //Used like: |
---|
| 704 | // |
---|
[560] | 705 | void meanRawDiffOnOffCycles() throw(string) { |
---|
[540] | 706 | list<string> listOfFiles; |
---|
| 707 | string directoryName; |
---|
| 708 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 709 | |
---|
[542] | 710 | //Make the listing of the directory |
---|
[541] | 711 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
[540] | 712 | |
---|
[541] | 713 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
[540] | 714 | iFileEnd = listOfFiles.end(); |
---|
| 715 | |
---|
[542] | 716 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
[544] | 717 | TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
[542] | 718 | uint_4 nSpectra=0; |
---|
| 719 | //Loop on files |
---|
[540] | 720 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
[542] | 721 | if (para.debuglev_>90){ |
---|
| 722 | cout << "load file <" << *iFile << ">" << endl; |
---|
| 723 | } |
---|
[540] | 724 | PInPersist fin(*iFile); |
---|
| 725 | vector<string> vec = fin.GetNameTags(); |
---|
[541] | 726 | list<string> listOfSpectra; |
---|
[542] | 727 | //Keep only required PPF objects |
---|
[540] | 728 | std::remove_copy_if( |
---|
| 729 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 730 | not1(match) |
---|
| 731 | ); |
---|
| 732 | |
---|
[560] | 733 | listOfSpectra.sort(stringCompare); |
---|
[541] | 734 | iSpecEnd = listOfSpectra.end(); |
---|
[542] | 735 | //Loop of spectra matrix |
---|
[541] | 736 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
[542] | 737 | if (para.debuglev_>90){ |
---|
| 738 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 739 | } |
---|
| 740 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 741 | fin.GetObject(aSpec,*iSpec); |
---|
| 742 | //How to see if the GetObject is ok?? Ask Reza |
---|
| 743 | nSpectra++; |
---|
[544] | 744 | meanOfSpectra+=aSpec; |
---|
[542] | 745 | }//eo loop on spectra in a file |
---|
| 746 | }//eo loop on files |
---|
| 747 | |
---|
| 748 | //Normalisation |
---|
[544] | 749 | if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
[541] | 750 | |
---|
[544] | 751 | //Compute the reduced version of the mean and sigma |
---|
| 752 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 753 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 754 | reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
| 755 | |
---|
[542] | 756 | {//Save the result |
---|
| 757 | stringstream tmp; |
---|
| 758 | tmp << nSpectra; |
---|
| 759 | string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
| 760 | cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
[544] | 761 | POutPersist fos(fileName); |
---|
| 762 | |
---|
[542] | 763 | string tag = "mean"; |
---|
[544] | 764 | fos << PPFNameTag(tag) << meanOfSpectra; |
---|
| 765 | tag = "meanred"; |
---|
| 766 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
| 767 | tag = "sigmared"; |
---|
| 768 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
| 769 | } |
---|
| 770 | } |
---|
| 771 | //------------------------------------------------------- |
---|
[560] | 772 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
[544] | 773 | //Used like: |
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| 774 | // |
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[560] | 775 | void medianRawDiffOnOffCycles() throw(string) { |
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[544] | 776 | list<string> listOfFiles; |
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| 777 | string directoryName; |
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| 778 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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| 779 | |
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| 780 | //Make the listing of the directory |
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| 781 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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| 782 | |
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| 783 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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| 784 | iFileEnd = listOfFiles.end(); |
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| 785 | |
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| 786 | |
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[562] | 787 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
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[544] | 788 | |
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| 789 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
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| 790 | uint_4 nSpectra=0; |
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| 791 | //Loop on files |
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| 792 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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| 793 | if (para.debuglev_>90){ |
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| 794 | cout << "load file <" << *iFile << ">" << endl; |
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| 795 | } |
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| 796 | PInPersist fin(*iFile); |
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| 797 | vector<string> vec = fin.GetNameTags(); |
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| 798 | list<string> listOfSpectra; |
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| 799 | //Keep only required PPF objects |
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| 800 | std::remove_copy_if( |
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| 801 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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| 802 | not1(match) |
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| 803 | ); |
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| 804 | |
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[560] | 805 | listOfSpectra.sort(stringCompare); |
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[544] | 806 | iSpecEnd = listOfSpectra.end(); |
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| 807 | //Loop of spectra matrix |
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[562] | 808 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
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[544] | 809 | if (para.debuglev_>90){ |
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| 810 | cout << " spactra <" << *iSpec << ">" << endl; |
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| 811 | } |
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| 812 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
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| 813 | fin.GetObject(aSpec,*iSpec); |
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| 814 | |
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[553] | 815 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
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| 816 | |
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[544] | 817 | nSpectra++; |
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| 818 | }//eo loop on spectra in a file |
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| 819 | }//eo loop on files |
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| 820 | |
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| 821 | |
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| 822 | |
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| 823 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
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| 824 | //Compute the median for each freq. and Channel |
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| 825 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
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| 826 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
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[552] | 827 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
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[544] | 828 | vector<r_4> tmp; |
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| 829 | tmp0.FillTo(tmp); |
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[552] | 830 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
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[544] | 831 | } |
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| 832 | } |
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| 833 | |
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| 834 | |
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| 835 | //Compute the reduced version of the mean and sigma |
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| 836 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
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| 837 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
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| 838 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
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| 839 | |
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[553] | 840 | |
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[562] | 841 | sa_size_t f1320=freqToChan(1320.); |
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| 842 | sa_size_t f1345=freqToChan(1345.); |
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| 843 | sa_size_t f1355=freqToChan(1355.); |
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| 844 | sa_size_t f1380=freqToChan(1380.); |
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[553] | 845 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
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| 846 | if (para.debuglev_>9){ |
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| 847 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
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| 848 | } |
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| 849 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
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| 850 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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| 851 | double meanMed1; |
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| 852 | double sigmaMed1; |
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| 853 | TVector<r_4> band1; |
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| 854 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
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| 855 | MeanSigma(band1,meanMed1,sigmaMed1); |
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| 856 | double meanMed2; |
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| 857 | double sigmaMed2; |
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| 858 | TVector<r_4> band2; |
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| 859 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
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| 860 | MeanSigma(band2,meanMed2,sigmaMed2); |
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| 861 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
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| 862 | } |
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| 863 | meanMed.Print(cout); |
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[562] | 864 | cout << endl; |
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| 865 | |
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[553] | 866 | |
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| 867 | //Compute the sigma in the range 1320MHz-1380MHz |
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| 868 | if (para.debuglev_>9){ |
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| 869 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
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| 870 | } |
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| 871 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
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[560] | 872 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
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| 873 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
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[553] | 874 | |
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| 875 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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| 876 | double meanSigma; |
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| 877 | double sigmaSigma; |
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| 878 | TVector<r_4> band; |
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| 879 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
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| 880 | MeanSigma(band,meanSigma,sigmaSigma); |
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| 881 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
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| 882 | sigmaMed(iCh) = meanSigma; |
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| 883 | } |
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| 884 | sigmaMed.Print(cout); |
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[562] | 885 | cout << endl; |
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| 886 | |
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[553] | 887 | |
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| 888 | |
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| 889 | if (para.debuglev_>9){ |
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| 890 | cout << "Compute medianOfSpectraNorm" << endl; |
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| 891 | } |
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| 892 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
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| 893 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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| 894 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
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| 895 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
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| 896 | } |
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| 897 | |
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| 898 | |
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| 899 | |
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[544] | 900 | {//Save the result |
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| 901 | stringstream tmp; |
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| 902 | tmp << nSpectra; |
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| 903 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
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[552] | 904 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
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[542] | 905 | POutPersist fos(fileName); |
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[544] | 906 | |
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| 907 | string tag = "median"; |
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| 908 | fos << PPFNameTag(tag) << medianOfSpectra; |
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[553] | 909 | |
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| 910 | tag = "medianNorm"; |
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| 911 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
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| 912 | |
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| 913 | |
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[544] | 914 | tag = "meanmedred"; |
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| 915 | fos << PPFNameTag(tag) << meanRedMtx; |
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| 916 | tag = "sigmamedred"; |
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| 917 | fos << PPFNameTag(tag) << sigmaRedMtx; |
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[552] | 918 | tag = "cycleVsfreq"; |
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| 919 | |
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| 920 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
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| 921 | fos << PPFNameTag(tag) << tarr; |
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[540] | 922 | } |
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| 923 | } |
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[544] | 924 | |
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[540] | 925 | //------------------------------------------------------- |
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[544] | 926 | int main(int narg, char* arg[]) { |
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[540] | 927 | |
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| 928 | int rc = 0; //return code |
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| 929 | string msg; //message used in Exceptions |
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| 930 | |
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| 931 | |
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[544] | 932 | |
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| 933 | //default value for initial parameters (see Para structure on top of the file) |
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[540] | 934 | string debuglev = "0"; |
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[544] | 935 | string action = "meanDiffOnOff"; |
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[540] | 936 | string inputPath = "."; |
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| 937 | string outputPath = "."; |
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| 938 | string sourceName = "Abell85"; |
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[541] | 939 | string ppfFile; |
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[544] | 940 | string nSliceInFreq = "32"; |
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[560] | 941 | string typeOfCalib="perRun"; |
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[561] | 942 | string calibFreq = "1346"; |
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[562] | 943 | string calibBandFreq="6.25"; |
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| 944 | string mxcycles; |
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| 945 | |
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[540] | 946 | // bool okarg=false; |
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| 947 | int ka=1; |
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[554] | 948 | while (ka<narg) { |
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[551] | 949 | if (strcmp(arg[ka],"-h")==0) { |
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[560] | 950 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
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[562] | 951 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
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[561] | 952 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
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[562] | 953 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
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[551] | 954 | << " -src [Abell85]\n -inPath [.]|<top_root_dir of the ppf file>\n" |
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| 955 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
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| 956 | << " -outPath [.]|<dir of the output> \n" |
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| 957 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
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[561] | 958 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
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[551] | 959 | << " -debug <level> " |
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| 960 | << endl; |
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| 961 | return 0; |
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| 962 | } |
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| 963 | else if (strcmp(arg[ka],"-debug")==0) { |
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[540] | 964 | debuglev=arg[ka+1]; |
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| 965 | ka+=2; |
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| 966 | } |
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| 967 | else if (strcmp(arg[ka],"-act")==0) { |
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| 968 | action=arg[ka+1]; |
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| 969 | ka+=2; |
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| 970 | } |
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[561] | 971 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
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| 972 | calibFreq=arg[ka+1]; |
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| 973 | ka+=2; |
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| 974 | } |
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[562] | 975 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
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| 976 | calibBandFreq=arg[ka+1]; |
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| 977 | ka+=2; |
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| 978 | } |
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| 979 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
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| 980 | mxcycles=arg[ka+1]; |
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| 981 | ka+=2; |
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| 982 | } |
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[540] | 983 | else if (strcmp(arg[ka],"-inPath")==0) { |
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| 984 | inputPath=arg[ka+1]; |
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| 985 | ka+=2; |
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| 986 | } |
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| 987 | else if (strcmp(arg[ka],"-outPath")==0) { |
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| 988 | outputPath=arg[ka+1]; |
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| 989 | ka+=2; |
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| 990 | } |
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[541] | 991 | else if (strcmp(arg[ka],"-src")==0) { |
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[540] | 992 | sourceName=arg[ka+1]; |
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| 993 | ka+=2; |
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| 994 | } |
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[541] | 995 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
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| 996 | ppfFile=arg[ka+1]; |
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[540] | 997 | ka+=2; |
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| 998 | } |
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[544] | 999 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
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| 1000 | nSliceInFreq=arg[ka+1]; |
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| 1001 | ka+=2; |
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| 1002 | } |
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[540] | 1003 | else ka++; |
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| 1004 | }//eo while |
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| 1005 | |
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[544] | 1006 | para.debuglev_ = atoi(debuglev.c_str()); |
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| 1007 | para.inPath_ = inputPath; |
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| 1008 | para.outPath_ = outputPath; |
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[540] | 1009 | para.sourceName_ = sourceName; |
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[544] | 1010 | para.ppfFile_ = ppfFile; |
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| 1011 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
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[561] | 1012 | para.calibFreq_ = calibFreq; |
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[562] | 1013 | para.calibBandFreq_ = calibBandFreq; |
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| 1014 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
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| 1015 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
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| 1016 | if (mxcycles != "") { |
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| 1017 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
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| 1018 | } else { |
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| 1019 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
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| 1020 | } |
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[540] | 1021 | |
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| 1022 | cout << "Dump Initial parameters ............" << endl; |
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| 1023 | cout << " action = " << action << "\n" |
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[562] | 1024 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
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[544] | 1025 | << " inputPath = " << para.inPath_ << "\n" |
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| 1026 | << " outputPath = " << para.outPath_ << "\n" |
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| 1027 | << " sourceName = " << para.sourceName_ << "\n" |
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| 1028 | << " ppfFile = " << para.ppfFile_ << "\n" |
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| 1029 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
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[561] | 1030 | << " calibFreq = " << para.calibFreq_ << "\n" |
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[562] | 1031 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
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[544] | 1032 | << " debuglev = " << para.debuglev_ << "\n"; |
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[540] | 1033 | cout << "...................................." << endl; |
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| 1034 | |
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[541] | 1035 | if ( "" == ppfFile ) { |
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[560] | 1036 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
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[541] | 1037 | << endl; |
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| 1038 | return 999; |
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| 1039 | } |
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| 1040 | |
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| 1041 | |
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[540] | 1042 | try { |
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| 1043 | |
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[542] | 1044 | // int b,e; |
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| 1045 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
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| 1046 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
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[540] | 1047 | |
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[560] | 1048 | if ( action == "meanRawDiffOnOff" ) { |
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| 1049 | meanRawDiffOnOffCycles(); |
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| 1050 | } else if (action == "medianRawDiffOnOff") { |
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| 1051 | medianRawDiffOnOffCycles(); |
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| 1052 | } else if (action == "meanCalibBAODiffOnOff") { |
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| 1053 | meanCalibBAODiffOnOffCycles(); |
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[544] | 1054 | } else { |
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| 1055 | msg = "Unknown action " + action; |
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| 1056 | throw msg; |
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[540] | 1057 | } |
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| 1058 | |
---|
[544] | 1059 | |
---|
[540] | 1060 | } catch (std::exception& sex) { |
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| 1061 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
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| 1062 | << "\n msg= " << sex.what() << endl; |
---|
| 1063 | rc = 78; |
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| 1064 | } |
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| 1065 | catch ( string str ) { |
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| 1066 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
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| 1067 | } |
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| 1068 | catch (...) { |
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| 1069 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
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| 1070 | rc = 79; |
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| 1071 | } |
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| 1072 | |
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| 1073 | return 0; |
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| 1074 | |
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| 1075 | } |
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