[540] | 1 | // Utilisation de SOPHYA pour faciliter les tests ... |
---|
| 2 | #include "sopnamsp.h" |
---|
| 3 | #include "machdefs.h" |
---|
| 4 | #include <dirent.h> |
---|
| 5 | #include <matharr.h> |
---|
| 6 | |
---|
| 7 | // include standard c/c++ |
---|
[562] | 8 | #include <regex.h> |
---|
| 9 | #include <stdio.h> |
---|
| 10 | #include <stdlib.h> |
---|
| 11 | #include <limits> |
---|
[540] | 12 | #include <iostream> |
---|
| 13 | #include <fstream> |
---|
| 14 | #include <string> |
---|
| 15 | #include <vector> |
---|
| 16 | #include <map> |
---|
| 17 | #include <functional> |
---|
| 18 | #include <algorithm> |
---|
| 19 | #include <numeric> |
---|
| 20 | #include <list> |
---|
| 21 | #include <exception> |
---|
| 22 | |
---|
| 23 | // include sophya mesure ressource CPU/memoire ... |
---|
| 24 | #include "resusage.h" |
---|
| 25 | #include "ctimer.h" |
---|
| 26 | #include "timing.h" |
---|
| 27 | #include "timestamp.h" |
---|
| 28 | #include "strutilxx.h" |
---|
| 29 | #include "ntuple.h" |
---|
| 30 | #include "fioarr.h" |
---|
| 31 | #include "tarrinit.h" |
---|
| 32 | #include "histinit.h" |
---|
| 33 | #include "fitsioserver.h" |
---|
| 34 | #include "fiosinit.h" |
---|
| 35 | #include "ppersist.h" |
---|
| 36 | |
---|
| 37 | //----------------------------------------------- |
---|
[563] | 38 | //Usage |
---|
| 39 | // |
---|
[602] | 40 | //./Objs/mergeAnaFiles -act meanRawDiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src NGC4383 -ppfFile dataRaw -debug 1000 -mxcycles 10 |
---|
[577] | 41 | //./Objs/mergeAnaFiles -act meanCalibBAODiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src Abell85 -ppfFile dataRaw -debug 1 -mxcycles 500 |
---|
| 42 | //./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log |
---|
[563] | 43 | // |
---|
| 44 | // |
---|
| 45 | //----------------------------------------------- |
---|
[542] | 46 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
---|
[544] | 47 | const sa_size_t NUMBER_OF_FREQ = 8192; |
---|
[560] | 48 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
---|
| 49 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
---|
[544] | 50 | //Input parameters |
---|
| 51 | struct Param { |
---|
| 52 | int debuglev_; //debug |
---|
| 53 | string inPath_; //root directory of the input files |
---|
| 54 | string outPath_; //output files are located here |
---|
| 55 | string sourceName_; //source name & subdirectory of the input files |
---|
| 56 | string ppfFile_; //generic name of the input files |
---|
| 57 | int nSliceInFreq_; //used by reduceSpectra() fnc |
---|
[561] | 58 | string calibFreq_; //freq. value used for calibration |
---|
[562] | 59 | r_4 rcalibFreq_; //float version |
---|
| 60 | string calibBandFreq_; //band of freq. used for calibration |
---|
| 61 | r_4 rcalibBandFreq_; //float version |
---|
| 62 | int maxNumberCycles_;//maximum number of cycles to be treated |
---|
[544] | 63 | } para; |
---|
| 64 | //-------------------------------------------------------------- |
---|
| 65 | //Utility functions |
---|
[552] | 66 | |
---|
[562] | 67 | sa_size_t freqToChan(r_4 f){ |
---|
[553] | 68 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
---|
| 69 | } |
---|
[562] | 70 | //-------- |
---|
| 71 | //COMPUTE the mean value on a freq. range for all channels |
---|
| 72 | //-------- |
---|
| 73 | void meanInRange(const TMatrix<r_4> mtx, |
---|
| 74 | sa_size_t chLow, |
---|
| 75 | sa_size_t chHigh, |
---|
| 76 | TVector<r_4>& vec){ |
---|
[563] | 77 | |
---|
[562] | 78 | sa_size_t nr = mtx.NRows(); |
---|
[563] | 79 | |
---|
[562] | 80 | for (sa_size_t ir=0; ir<nr; ir++){ |
---|
| 81 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
---|
| 82 | double mean, sigma; |
---|
| 83 | MeanSigma(tmp,mean,sigma); |
---|
| 84 | vec(ir) = mean; |
---|
| 85 | } |
---|
| 86 | } |
---|
[553] | 87 | //--------- |
---|
[561] | 88 | class median_of_empty_list_exception:public std::exception{ |
---|
[552] | 89 | virtual const char* what() const throw() { |
---|
| 90 | return "Attempt to take the median of an empty list of numbers. " |
---|
| 91 | "The median of an empty list is undefined."; |
---|
| 92 | } |
---|
[595] | 93 | }; |
---|
| 94 | template<class RandAccessIter> |
---|
| 95 | double median(RandAccessIter begin, RandAccessIter end) |
---|
| 96 | throw(median_of_empty_list_exception){ |
---|
| 97 | if(begin == end){ throw median_of_empty_list_exception(); } |
---|
| 98 | std::size_t size = end - begin; |
---|
| 99 | std::size_t middleIdx = size/2; |
---|
| 100 | RandAccessIter target = begin + middleIdx; |
---|
| 101 | std::nth_element(begin, target, end); |
---|
[552] | 102 | |
---|
[595] | 103 | if(size % 2 != 0){ //Odd number of elements |
---|
| 104 | return *target; |
---|
| 105 | }else{ //Even number of elements |
---|
| 106 | double a = *target; |
---|
| 107 | RandAccessIter targetNeighbor= target-1; |
---|
| 108 | std::nth_element(begin, targetNeighbor, end); |
---|
| 109 | return (a+*targetNeighbor)/2.0; |
---|
[552] | 110 | } |
---|
[595] | 111 | } |
---|
[552] | 112 | |
---|
[561] | 113 | //------------- |
---|
[591] | 114 | //JEC 25/10/11 Perform a median filtering with a sliding window of "halfwidth" half width |
---|
| 115 | // It takes care of the edges and is based on the median function (above) |
---|
| 116 | void medianFiltering(const TMatrix<r_4> mtx, |
---|
| 117 | sa_size_t halfwidth, |
---|
| 118 | TMatrix<r_4>& vec) { |
---|
| 119 | |
---|
| 120 | sa_size_t nr = mtx.NRows(); |
---|
| 121 | sa_size_t nc = mtx.NCols(); |
---|
| 122 | sa_size_t chMin = 0; |
---|
| 123 | sa_size_t chMax = nc-1; |
---|
| 124 | |
---|
| 125 | for (sa_size_t ir=0; ir<nr; ir++){ |
---|
| 126 | for (sa_size_t ic=0; ic<nc; ic++) { |
---|
| 127 | sa_size_t chLow = ic-halfwidth; |
---|
| 128 | chLow = (chLow >= chMin) ? chLow : chMin; |
---|
| 129 | sa_size_t chHigh = ic+halfwidth; |
---|
| 130 | chHigh = ( chHigh <= chMax ) ? chHigh : chMax; |
---|
| 131 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
---|
| 132 | vector<r_4> val; |
---|
| 133 | tmp.FillTo(val); |
---|
| 134 | vec(ir,ic) = median(val.begin(),val.end()); |
---|
| 135 | } |
---|
| 136 | } |
---|
| 137 | } |
---|
| 138 | //------------- |
---|
[561] | 139 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
---|
| 140 | // Skip delimiters at beginning. |
---|
| 141 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
---|
| 142 | // Find first "non-delimiter". |
---|
| 143 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
---|
| 144 | |
---|
| 145 | while (string::npos != pos || string::npos != lastPos) |
---|
| 146 | { |
---|
| 147 | // Found a token, add it to the vector. |
---|
| 148 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
---|
| 149 | // Skip delimiters. Note the "not_of" |
---|
| 150 | lastPos = str.find_first_not_of(delimiters, pos); |
---|
| 151 | // Find next "non-delimiter" |
---|
| 152 | pos = str.find_first_of(delimiters, lastPos); |
---|
| 153 | } |
---|
| 154 | } |
---|
[544] | 155 | //-------------------------------------------------------------- |
---|
[540] | 156 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
---|
| 157 | int i, w=0, len; |
---|
| 158 | char *word = NULL; |
---|
| 159 | regex_t rgT; |
---|
| 160 | regmatch_t match; |
---|
| 161 | regcomp(&rgT,patrn,REG_EXTENDED); |
---|
| 162 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
---|
| 163 | *begin = (int)match.rm_so; |
---|
| 164 | *end = (int)match.rm_eo; |
---|
| 165 | len = *end-*begin; |
---|
| 166 | word=(char*)malloc(len+1); |
---|
| 167 | for (i=*begin; i<*end; i++) { |
---|
| 168 | word[w] = string[i]; |
---|
| 169 | w++; } |
---|
| 170 | word[w]=0; |
---|
| 171 | } |
---|
| 172 | regfree(&rgT); |
---|
| 173 | return word; |
---|
| 174 | } |
---|
[544] | 175 | //------- |
---|
[540] | 176 | sa_size_t round_sa(r_4 r) { |
---|
| 177 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
---|
| 178 | } |
---|
| 179 | //----- |
---|
| 180 | string StringToLower(string strToConvert){ |
---|
| 181 | //change each element of the string to lower case |
---|
| 182 | for(unsigned int i=0;i<strToConvert.length();i++) { |
---|
| 183 | strToConvert[i] = tolower(strToConvert[i]); |
---|
| 184 | } |
---|
| 185 | return strToConvert;//return the converted string |
---|
| 186 | } |
---|
| 187 | //----- |
---|
| 188 | bool stringCompare( const string &left, const string &right ){ |
---|
| 189 | if( left.size() < right.size() ) |
---|
| 190 | return true; |
---|
| 191 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
---|
| 192 | if( tolower( *lit ) < tolower( *rit ) ) |
---|
| 193 | return true; |
---|
| 194 | else if( tolower( *lit ) > tolower( *rit ) ) |
---|
| 195 | return false; |
---|
| 196 | return false; |
---|
| 197 | } |
---|
| 198 | //----- |
---|
| 199 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
---|
| 200 | list<string> theList; |
---|
| 201 | |
---|
| 202 | |
---|
| 203 | DIR *dip; |
---|
| 204 | struct dirent *dit; |
---|
| 205 | string msg; string fileName; |
---|
| 206 | string fullFileName; |
---|
| 207 | size_t found; |
---|
| 208 | |
---|
| 209 | if ((dip=opendir(dir.c_str())) == NULL ) { |
---|
| 210 | msg = "opendir failed on directory "+dir; |
---|
| 211 | throw msg; |
---|
| 212 | } |
---|
| 213 | while ( (dit = readdir(dip)) != NULL ) { |
---|
| 214 | fileName = dit->d_name; |
---|
| 215 | found=fileName.find(filePettern); |
---|
| 216 | if (found != string::npos) { |
---|
| 217 | fullFileName = dir + "/"; |
---|
| 218 | fullFileName += fileName; |
---|
| 219 | theList.push_back(fullFileName); |
---|
| 220 | } |
---|
| 221 | }//eo while |
---|
| 222 | if (closedir(dip) == -1) { |
---|
| 223 | msg = "closedir failed on directory "+dir; |
---|
| 224 | throw msg; |
---|
| 225 | } |
---|
| 226 | |
---|
| 227 | theList.sort(stringCompare); |
---|
| 228 | |
---|
| 229 | return theList; |
---|
| 230 | |
---|
| 231 | } |
---|
| 232 | // |
---|
| 233 | class StringMatch : public unary_function<string,bool> { |
---|
| 234 | public: |
---|
| 235 | StringMatch(const string& pattern): pattern_(pattern){} |
---|
| 236 | bool operator()(const string& aStr) const { |
---|
| 237 | |
---|
| 238 | |
---|
| 239 | int b,e; |
---|
| 240 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
---|
| 241 | |
---|
[541] | 242 | // cout << "investigate " << aStr << " to find " << pattern_ |
---|
| 243 | // << "[" <<b<<","<<e<<"]" |
---|
| 244 | // << endl; |
---|
[540] | 245 | |
---|
| 246 | |
---|
| 247 | if (b != 0) return false; |
---|
[544] | 248 | if (e != (int)aStr.size()) return false; |
---|
[540] | 249 | return true; |
---|
| 250 | |
---|
| 251 | } |
---|
| 252 | private: |
---|
| 253 | string pattern_; |
---|
| 254 | }; |
---|
| 255 | //------------------------------------------------------- |
---|
[544] | 256 | //Rebin in frequence + compute mean and sigma |
---|
| 257 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
---|
| 258 | TMatrix<r_4>& meanMtx, |
---|
| 259 | TMatrix<r_4>& sigmaMtx) { |
---|
| 260 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
---|
| 261 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
---|
| 262 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
---|
| 263 | sa_size_t freqLow= iSlice*deltaFreq; |
---|
| 264 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
---|
| 265 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 266 | TVector<r_4> reducedRow; |
---|
| 267 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
---|
| 268 | double mean; |
---|
| 269 | double sigma; |
---|
| 270 | MeanSigma(reducedRow,mean,sigma); |
---|
| 271 | meanMtx(iCh,iSlice) = mean; |
---|
| 272 | sigmaMtx(iCh,iSlice) = sigma; |
---|
| 273 | }//eo loop on channels |
---|
| 274 | }//eo loop on slices |
---|
| 275 | } |
---|
[541] | 276 | //------------------------------------------------------- |
---|
[560] | 277 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
---|
| 278 | // |
---|
[587] | 279 | void meanCalibBAODiffOnOffCycles() throw(string) { |
---|
[560] | 280 | |
---|
| 281 | list<string> listOfFiles; |
---|
| 282 | string directoryName; |
---|
| 283 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 284 | |
---|
| 285 | //Make the listing of the directory |
---|
| 286 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
| 287 | |
---|
[561] | 288 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
[560] | 289 | iFileEnd = listOfFiles.end(); |
---|
[561] | 290 | |
---|
[562] | 291 | //mean ON-OFF over the list of cycles |
---|
[591] | 292 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
[562] | 293 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
| 294 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
| 295 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
[591] | 296 | static const int NINFO=21; |
---|
[577] | 297 | char* onffTupleName[NINFO]={"cycle" |
---|
[591] | 298 | ,"onoffRaw0","onoffRaw1" |
---|
| 299 | ,"onoffRun0","onoffRun1" |
---|
| 300 | ,"onoffCycle0","onoffCycle1" |
---|
| 301 | ,"onoffRaw01420","onoffRaw11420" |
---|
| 302 | ,"onoffRun01420","onoffRun11420" |
---|
| 303 | ,"onoffCycle01420","onoffCycle11420" |
---|
| 304 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
| 305 | ,"onoffRun01420side","onoffRun11420side" |
---|
| 306 | ,"onoffCycle01420side","onoffCycle11420side" |
---|
| 307 | ,"onoffRaw0f14001420","onoffRaw1f14001420" |
---|
[577] | 308 | }; |
---|
| 309 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
| 310 | r_4 xnt[NINFO]; |
---|
[562] | 311 | |
---|
[577] | 312 | //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up |
---|
| 313 | sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
---|
| 314 | sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
---|
| 315 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
---|
[582] | 316 | sa_size_t ch1420Low = freqToChan(1420.4-0.2); |
---|
| 317 | sa_size_t ch1420High = freqToChan(1420.4+0.2); |
---|
[577] | 318 | |
---|
| 319 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
| 320 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
| 321 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
| 322 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
| 323 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
[591] | 324 | |
---|
| 325 | //25/10/11 follow 1400-1420Mhz |
---|
| 326 | sa_size_t ch1420 = freqToChan(1420); |
---|
| 327 | sa_size_t ch1400 = freqToChan(1400); |
---|
[577] | 328 | |
---|
[582] | 329 | if (para.debuglev_>0){ |
---|
[577] | 330 | cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl; |
---|
| 331 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
[582] | 332 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
| 333 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
[563] | 334 | } |
---|
[562] | 335 | |
---|
[561] | 336 | //Loop on files/run |
---|
[562] | 337 | |
---|
| 338 | int totalNumberCycles=0; //total number of cycles for normalisation |
---|
[560] | 339 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 340 | if (para.debuglev_>90){ |
---|
| 341 | cout << "load file <" << *iFile << ">" << endl; |
---|
| 342 | } |
---|
[561] | 343 | |
---|
| 344 | vector<string> tokens; |
---|
| 345 | split(*iFile,"_",tokens); |
---|
| 346 | string dateOfRun = tokens[1]; |
---|
| 347 | if (para.debuglev_>90){ |
---|
| 348 | cout << "date <" << dateOfRun << ">" << endl; |
---|
| 349 | } |
---|
| 350 | vector<string> tokens2; |
---|
| 351 | split(tokens[2],".",tokens2); |
---|
| 352 | string srcLower = tokens2[0]; |
---|
| 353 | |
---|
| 354 | |
---|
| 355 | |
---|
[560] | 356 | PInPersist fin(*iFile); |
---|
| 357 | vector<string> vec = fin.GetNameTags(); |
---|
| 358 | |
---|
[561] | 359 | vector<string> modeList; |
---|
| 360 | modeList.push_back("On"); |
---|
| 361 | modeList.push_back("Off"); |
---|
| 362 | vector<string>::const_iterator iMode; |
---|
| 363 | |
---|
| 364 | map<string, list<int> > cycleModeCollect; |
---|
| 365 | |
---|
| 366 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
| 367 | list<string> listOfSpectra; |
---|
[560] | 368 | //Keep only required PPF objects |
---|
[561] | 369 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
[560] | 370 | std::remove_copy_if( |
---|
| 371 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
[561] | 372 | not1(StringMatch(matchstr)) |
---|
[560] | 373 | ); |
---|
| 374 | |
---|
[561] | 375 | listOfSpectra.sort(stringCompare); |
---|
| 376 | iSpecEnd = listOfSpectra.end(); |
---|
[560] | 377 | |
---|
[561] | 378 | matchstr = "[0-9]+"; |
---|
[560] | 379 | //Loop of spectra matrix |
---|
[561] | 380 | list<int> listOfCycles; |
---|
| 381 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
| 382 | int b,e; |
---|
| 383 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
[560] | 384 | if (para.debuglev_>90){ |
---|
[561] | 385 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 386 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
[560] | 387 | } |
---|
[561] | 388 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
| 389 | }//end loop spectra |
---|
| 390 | cycleModeCollect[*iMode] = listOfCycles; |
---|
| 391 | }//end of mode |
---|
| 392 | |
---|
| 393 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
| 394 | list<int> commonCycles; |
---|
| 395 | set_intersection(cycleModeCollect["On"].begin(), |
---|
| 396 | cycleModeCollect["On"].end(), |
---|
| 397 | cycleModeCollect["Off"].begin(), |
---|
| 398 | cycleModeCollect["Off"].end(), |
---|
| 399 | back_inserter(commonCycles) |
---|
| 400 | ); |
---|
| 401 | |
---|
| 402 | if (para.debuglev_>90){ |
---|
| 403 | cout << "Liste of cycles common to On & Off: <"; |
---|
| 404 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
| 405 | cout << *i << " "; |
---|
| 406 | } |
---|
| 407 | cout << ">" << endl; |
---|
| 408 | } |
---|
| 409 | |
---|
| 410 | // |
---|
| 411 | //Load BAO Calibration factors "per Cycle and Channels" |
---|
| 412 | //Compute the mean per Cycle to |
---|
| 413 | // fill factors "per Run and Channels" with the same cycle list |
---|
| 414 | // |
---|
| 415 | // |
---|
| 416 | //TODO improve the code.... |
---|
| 417 | |
---|
| 418 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
---|
| 419 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
---|
| 420 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
---|
| 421 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
---|
| 422 | |
---|
| 423 | string calibFileName; |
---|
| 424 | ifstream ifs; |
---|
| 425 | sa_size_t nr,nc; //values read |
---|
| 426 | |
---|
| 427 | //OFF Cycle per Channel |
---|
| 428 | calibFileName = directoryName + "/" |
---|
| 429 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
| 430 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
| 431 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 432 | ifs.open(calibFileName.c_str()); |
---|
| 433 | if ( ! ifs.is_open() ) { |
---|
| 434 | |
---|
| 435 | throw calibFileName + " cannot be opened..."; |
---|
| 436 | } |
---|
| 437 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
| 438 | if(para.debuglev_>9){ |
---|
| 439 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 440 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
[562] | 441 | cout << endl; |
---|
[561] | 442 | } |
---|
| 443 | |
---|
| 444 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
| 445 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
| 446 | {//Compute the mean |
---|
| 447 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
| 448 | double mean,sigma; |
---|
| 449 | MeanSigma(coef,mean,sigma); |
---|
| 450 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
| 451 | } |
---|
| 452 | if(para.debuglev_>9){ |
---|
| 453 | cout << "Fill calib. with mean value " << endl; |
---|
| 454 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
[562] | 455 | cout << endl; |
---|
[561] | 456 | } |
---|
| 457 | ifs.close(); |
---|
| 458 | |
---|
| 459 | // |
---|
| 460 | calibFileName = directoryName + "/" |
---|
| 461 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
| 462 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
| 463 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 464 | ifs.open(calibFileName.c_str()); |
---|
| 465 | if ( ! ifs.is_open() ) { |
---|
| 466 | |
---|
| 467 | throw calibFileName + " cannot be opened..."; |
---|
| 468 | } |
---|
| 469 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
| 470 | if(para.debuglev_>9){ |
---|
| 471 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 472 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
[562] | 473 | cout << endl; |
---|
[561] | 474 | } |
---|
| 475 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
| 476 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
| 477 | {//Compute the mean |
---|
| 478 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
| 479 | double mean,sigma; |
---|
| 480 | MeanSigma(coef,mean,sigma); |
---|
[563] | 481 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
[561] | 482 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
| 483 | } |
---|
| 484 | if(para.debuglev_>9){ |
---|
| 485 | cout << "Fill calib. with mean value " << endl; |
---|
| 486 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
[562] | 487 | cout << endl; |
---|
[561] | 488 | } |
---|
| 489 | ifs.close(); |
---|
| 490 | |
---|
| 491 | //ON Cycle per Channel |
---|
| 492 | calibFileName = directoryName + "/" |
---|
| 493 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 494 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
| 495 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 496 | ifs.open(calibFileName.c_str()); |
---|
| 497 | if ( ! ifs.is_open() ) { |
---|
| 498 | |
---|
| 499 | throw calibFileName + " cannot be opened..."; |
---|
| 500 | } |
---|
| 501 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
| 502 | if(para.debuglev_>9){ |
---|
| 503 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 504 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
[562] | 505 | cout << endl; |
---|
[561] | 506 | } |
---|
| 507 | |
---|
| 508 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
| 509 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
| 510 | {//Compute the mean |
---|
| 511 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
| 512 | double mean,sigma; |
---|
| 513 | MeanSigma(coef,mean,sigma); |
---|
[563] | 514 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
[561] | 515 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
| 516 | } |
---|
| 517 | if(para.debuglev_>9){ |
---|
| 518 | cout << "Fill calib. with mean value " << endl; |
---|
| 519 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
[562] | 520 | cout << endl; |
---|
[561] | 521 | } |
---|
| 522 | ifs.close(); |
---|
| 523 | |
---|
| 524 | |
---|
| 525 | calibFileName = directoryName + "/" |
---|
| 526 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
| 527 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
| 528 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
| 529 | ifs.open(calibFileName.c_str()); |
---|
| 530 | if ( ! ifs.is_open() ) { |
---|
| 531 | throw calibFileName + " cannot be opened..."; |
---|
| 532 | } |
---|
| 533 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
| 534 | if(para.debuglev_>9){ |
---|
| 535 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
| 536 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
[562] | 537 | cout << endl; |
---|
[561] | 538 | } |
---|
| 539 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
| 540 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
| 541 | {//Compute the mean |
---|
| 542 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
| 543 | double mean,sigma; |
---|
| 544 | MeanSigma(coef,mean,sigma); |
---|
[563] | 545 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
[561] | 546 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
| 547 | } |
---|
| 548 | if(para.debuglev_>9){ |
---|
| 549 | cout << "Fill calib. with mean value " << endl; |
---|
| 550 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
[562] | 551 | cout << endl; |
---|
[561] | 552 | } |
---|
| 553 | |
---|
| 554 | ifs.close(); |
---|
| 555 | |
---|
| 556 | //link <cycle> - <calibration coefficient> |
---|
[562] | 557 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
| 558 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
| 559 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
| 560 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
| 561 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
[561] | 562 | |
---|
[562] | 563 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
| 564 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
| 565 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
| 566 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
[560] | 567 | |
---|
[562] | 568 | //per Run based BAO coefficients |
---|
| 569 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
| 570 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
[563] | 571 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
| 572 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
| 573 | |
---|
[562] | 574 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
| 575 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
| 576 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
| 577 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
| 578 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
| 579 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
| 580 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
| 581 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
[563] | 582 | }//eo loop on coef Off |
---|
[562] | 583 | |
---|
| 584 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
| 585 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
| 586 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
| 587 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
| 588 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
| 589 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
| 590 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
| 591 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
| 592 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
| 593 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
[563] | 594 | }//eo loop on coef On |
---|
[562] | 595 | |
---|
[561] | 596 | //Loop on cyles |
---|
| 597 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
[562] | 598 | |
---|
[563] | 599 | //Look if the cycle has been calibrated... |
---|
| 600 | bool isCycleCalibrated = |
---|
| 601 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
| 602 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
| 603 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
| 604 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
| 605 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
| 606 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
| 607 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
| 608 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
| 609 | |
---|
| 610 | if(para.debuglev_>9) { |
---|
[562] | 611 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
[563] | 612 | if (isCycleCalibrated) { |
---|
| 613 | cout << "Cycle calibrated " << endl; |
---|
| 614 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
| 615 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
| 616 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
| 617 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
| 618 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
| 619 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
| 620 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
| 621 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
| 622 | } else { |
---|
| 623 | cout << "Cycle NOT calibrated " << endl; |
---|
| 624 | } |
---|
| 625 | }//debug |
---|
| 626 | |
---|
| 627 | |
---|
| 628 | if ( ! isCycleCalibrated ) continue; |
---|
[562] | 629 | |
---|
[561] | 630 | string ppftag; |
---|
| 631 | //load ON phase |
---|
| 632 | stringstream cycle; |
---|
| 633 | cycle << *ic; |
---|
| 634 | |
---|
| 635 | ppftag = "specRawOn"+cycle.str(); |
---|
[562] | 636 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 637 | fin.GetObject(aSpecOn,ppftag); |
---|
[561] | 638 | |
---|
[562] | 639 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
| 640 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
| 641 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
| 642 | |
---|
| 643 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
| 644 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
| 645 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
[561] | 646 | |
---|
[602] | 647 | //Load OFF phase |
---|
[562] | 648 | ppftag = "specRawOff"+cycle.str(); |
---|
| 649 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 650 | fin.GetObject(aSpecOff,ppftag); |
---|
[561] | 651 | |
---|
[562] | 652 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
| 653 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
| 654 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
[561] | 655 | |
---|
[562] | 656 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
| 657 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
| 658 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
[561] | 659 | |
---|
[562] | 660 | |
---|
| 661 | //Perform the difference ON-OFF with the different calibration options |
---|
| 662 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
| 663 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
[561] | 664 | |
---|
[591] | 665 | //JEC 29/10/11 add ON-OFF/OFF |
---|
| 666 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
| 667 | TMatrix<r_4> aSpecOffFitltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 668 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
| 669 | medianFiltering(aSpecOff,halfWidth,aSpecOffFitltered); |
---|
| 670 | |
---|
| 671 | diffOnOffOvOff_noCalib.Div(aSpecOffFitltered); //division in place |
---|
| 672 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
| 673 | |
---|
[562] | 674 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
| 675 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
| 676 | |
---|
| 677 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
| 678 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
| 679 | |
---|
[563] | 680 | // |
---|
| 681 | totalNumberCycles++; |
---|
[562] | 682 | //Fill NTuple |
---|
[563] | 683 | xnt[0] = totalNumberCycles; |
---|
[577] | 684 | |
---|
| 685 | //Follow up arround the Calibration Freq. |
---|
| 686 | TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
| 687 | meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib); |
---|
| 688 | xnt[1] = meanInRange_CalibFreq_noCalib(0); |
---|
| 689 | xnt[2] = meanInRange_CalibFreq_noCalib(1); |
---|
[562] | 690 | |
---|
[577] | 691 | TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
| 692 | meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib); |
---|
| 693 | xnt[3] = meanInRange_CalibFreq_perRunCalib(0); |
---|
| 694 | xnt[4] = meanInRange_CalibFreq_perRunCalib(1); |
---|
[562] | 695 | |
---|
[577] | 696 | TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
| 697 | meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib); |
---|
| 698 | xnt[5] = meanInRange_CalibFreq_perCycleCalib(0); |
---|
| 699 | xnt[6] = meanInRange_CalibFreq_perCycleCalib(1); |
---|
| 700 | |
---|
| 701 | |
---|
| 702 | //Follow up arround the 1420.4MHz Freq. |
---|
| 703 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
| 704 | meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
| 705 | xnt[7] = meanInRange_1420Freq_noCalib(0); |
---|
| 706 | xnt[8] = meanInRange_1420Freq_noCalib(1); |
---|
| 707 | |
---|
| 708 | TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
| 709 | meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib); |
---|
| 710 | xnt[9] = meanInRange_1420Freq_perRunCalib(0); |
---|
| 711 | xnt[10] = meanInRange_1420Freq_perRunCalib(1); |
---|
| 712 | |
---|
| 713 | TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
| 714 | meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib); |
---|
| 715 | xnt[11] = meanInRange_1420Freq_perCycleCalib(0); |
---|
| 716 | xnt[12] = meanInRange_1420Freq_perCycleCalib(1); |
---|
| 717 | |
---|
| 718 | |
---|
| 719 | //Follow up below the 1420.4MHz Freq. |
---|
| 720 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
| 721 | meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
| 722 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
| 723 | meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
| 724 | |
---|
| 725 | xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
| 726 | xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
| 727 | |
---|
| 728 | |
---|
| 729 | TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS); |
---|
| 730 | meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun); |
---|
| 731 | TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS); |
---|
| 732 | meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun); |
---|
| 733 | |
---|
| 734 | xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.; |
---|
| 735 | xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.; |
---|
| 736 | |
---|
| 737 | |
---|
| 738 | TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
| 739 | meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle); |
---|
| 740 | TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
| 741 | meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle); |
---|
| 742 | |
---|
| 743 | xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.; |
---|
| 744 | xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.; |
---|
| 745 | |
---|
[591] | 746 | |
---|
| 747 | //JEC 25/10/11 follow 1400-1420 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
| 748 | TVector<r_4> meanInRange_1400a1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
| 749 | meanInRange(diffOnOff_noCalib,ch1400,ch1420,meanInRange_1400a1420Freq_noCalib); |
---|
| 750 | xnt[19] = meanInRange_1400a1420Freq_noCalib(0); |
---|
| 751 | xnt[20] = meanInRange_1400a1420Freq_noCalib(1); |
---|
[562] | 752 | |
---|
[591] | 753 | |
---|
| 754 | |
---|
[577] | 755 | //store infos to Ntuple |
---|
[562] | 756 | onoffevolution.Fill(xnt); |
---|
| 757 | |
---|
[563] | 758 | //Quit if enough |
---|
[562] | 759 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 760 | |
---|
[561] | 761 | }//eo loop on cycles |
---|
[562] | 762 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 763 | |
---|
| 764 | }//eo loop on spectra in a file |
---|
| 765 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
| 766 | //Normalisation |
---|
[563] | 767 | if(totalNumberCycles > 0){ |
---|
[591] | 768 | //JEC 29/10 add ON-OFF/OFF |
---|
| 769 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
[562] | 770 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
| 771 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
| 772 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
| 773 | } |
---|
| 774 | |
---|
| 775 | //Compute the reduced version of the mean and sigma |
---|
| 776 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 777 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 778 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
[561] | 779 | |
---|
[562] | 780 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 781 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 782 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
| 783 | |
---|
| 784 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 785 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 786 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
| 787 | |
---|
| 788 | {//save the results |
---|
| 789 | stringstream tmp; |
---|
| 790 | tmp << totalNumberCycles; |
---|
| 791 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
[563] | 792 | |
---|
[562] | 793 | POutPersist fos(fileName); |
---|
[563] | 794 | cout << "Save output in " << fileName << endl; |
---|
[562] | 795 | |
---|
| 796 | string tag = "meanNoCalib"; |
---|
| 797 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
[591] | 798 | |
---|
| 799 | //JEC 29/10/11 |
---|
| 800 | tag = "meanOvOffNoCalib"; |
---|
| 801 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
| 802 | |
---|
[562] | 803 | tag = "meanPerRunCalib"; |
---|
| 804 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
| 805 | tag = "meanPerCycleCalib"; |
---|
| 806 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
| 807 | |
---|
| 808 | tag = "redmeanNoCalib"; |
---|
| 809 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
| 810 | tag = "redsigmaNoCalib"; |
---|
| 811 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
| 812 | |
---|
| 813 | tag = "redmeanPerRunCalib"; |
---|
| 814 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
| 815 | tag = "redsigmaPerRunCalib"; |
---|
| 816 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
| 817 | |
---|
| 818 | tag = "redmeanPerCycleCalib"; |
---|
| 819 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
| 820 | tag = "redsigmaPerCycleCalib"; |
---|
| 821 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
| 822 | |
---|
| 823 | tag = "onoffevol"; |
---|
| 824 | fos << PPFNameTag(tag) << onoffevolution; |
---|
| 825 | }//end of save |
---|
[560] | 826 | } |
---|
[602] | 827 | //JEC 14/11/11 New meanRawDiffOnOffCycles START |
---|
[560] | 828 | //------------------------------------------------------- |
---|
[602] | 829 | //Compute the mean of Diff ON-OFF/OFF from Raw spectra |
---|
[544] | 830 | //Used like: |
---|
| 831 | // |
---|
[560] | 832 | void meanRawDiffOnOffCycles() throw(string) { |
---|
[540] | 833 | list<string> listOfFiles; |
---|
| 834 | string directoryName; |
---|
| 835 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 836 | |
---|
[542] | 837 | //Make the listing of the directory |
---|
[541] | 838 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
[540] | 839 | |
---|
[541] | 840 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
[540] | 841 | iFileEnd = listOfFiles.end(); |
---|
[602] | 842 | |
---|
| 843 | //mean ON-OFF over the list of cycles |
---|
| 844 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/GAIN |
---|
| 845 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/Filtered_OFF |
---|
[604] | 846 | TMatrix<r_4> meanONovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // ON/Filtered_OFF |
---|
| 847 | TMatrix<r_4> meanOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // OFF/Filtered_OFF |
---|
[602] | 848 | |
---|
| 849 | int totalNumberCycles=0; //total number of cycles |
---|
| 850 | |
---|
[542] | 851 | //Loop on files |
---|
[540] | 852 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
[542] | 853 | if (para.debuglev_>90){ |
---|
| 854 | } |
---|
[540] | 855 | PInPersist fin(*iFile); |
---|
| 856 | vector<string> vec = fin.GetNameTags(); |
---|
[602] | 857 | |
---|
| 858 | vector<string> modeList; |
---|
| 859 | modeList.push_back("On"); |
---|
| 860 | modeList.push_back("Off"); |
---|
| 861 | vector<string>::const_iterator iMode; |
---|
| 862 | |
---|
| 863 | map<string, list<int> > cycleModeCollect; |
---|
| 864 | |
---|
| 865 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
| 866 | list<string> listOfSpectra; |
---|
| 867 | //Keep only required PPF objects |
---|
| 868 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
| 869 | std::remove_copy_if( |
---|
| 870 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 871 | not1(StringMatch(matchstr)) |
---|
| 872 | ); |
---|
| 873 | |
---|
| 874 | listOfSpectra.sort(stringCompare); |
---|
| 875 | iSpecEnd = listOfSpectra.end(); |
---|
| 876 | |
---|
| 877 | matchstr = "[0-9]+"; |
---|
| 878 | //Loop of spectra matrix |
---|
| 879 | list<int> listOfCycles; |
---|
| 880 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
| 881 | int b,e; |
---|
| 882 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
| 883 | if (para.debuglev_>90){ |
---|
| 884 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 885 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
| 886 | } |
---|
| 887 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
| 888 | }//end loop spectra |
---|
| 889 | cycleModeCollect[*iMode] = listOfCycles; |
---|
| 890 | }//end of mode |
---|
| 891 | |
---|
| 892 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
| 893 | list<int> commonCycles; |
---|
| 894 | set_intersection(cycleModeCollect["On"].begin(), |
---|
| 895 | cycleModeCollect["On"].end(), |
---|
| 896 | cycleModeCollect["Off"].begin(), |
---|
| 897 | cycleModeCollect["Off"].end(), |
---|
| 898 | back_inserter(commonCycles) |
---|
| 899 | ); |
---|
| 900 | |
---|
| 901 | if (para.debuglev_>90){ |
---|
| 902 | cout << "Liste of cycles common to On & Off: <"; |
---|
| 903 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
| 904 | cout << *i << " "; |
---|
[542] | 905 | } |
---|
[602] | 906 | cout << ">" << endl; |
---|
| 907 | } |
---|
| 908 | |
---|
| 909 | //Loop on cyles |
---|
| 910 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
| 911 | |
---|
| 912 | string ppftag; |
---|
| 913 | //load ON phase |
---|
| 914 | stringstream cycle; |
---|
| 915 | cycle << *ic; |
---|
| 916 | ppftag = "specRawOn"+cycle.str(); |
---|
| 917 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 918 | fin.GetObject(aSpecOn,ppftag); |
---|
| 919 | |
---|
| 920 | //Load OFF phase |
---|
| 921 | ppftag = "specRawOff"+cycle.str(); |
---|
| 922 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 923 | fin.GetObject(aSpecOff,ppftag); |
---|
| 924 | |
---|
| 925 | //Perform the difference ON-OFF |
---|
| 926 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
| 927 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
| 928 | |
---|
| 929 | //JEC 29/10/11 add ON-OFF/OFF |
---|
| 930 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
| 931 | TMatrix<r_4> aSpecOffFitltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 932 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
| 933 | medianFiltering(aSpecOff,halfWidth,aSpecOffFitltered); |
---|
| 934 | |
---|
| 935 | diffOnOffOvOff_noCalib.Div(aSpecOffFitltered); //division in place |
---|
| 936 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
| 937 | |
---|
[604] | 938 | |
---|
| 939 | //JEC 15/11/11 add ON/OFF and OFF/OFF |
---|
| 940 | TMatrix<r_4> onOvOff(aSpecOn,false); |
---|
| 941 | onOvOff.Div(aSpecOffFitltered); |
---|
| 942 | meanONovOFF_noCalib += onOvOff; |
---|
| 943 | |
---|
| 944 | TMatrix<r_4> offOvOff(aSpecOff,false); |
---|
| 945 | offOvOff.Div(aSpecOffFitltered); |
---|
| 946 | meanOFFovOFF_noCalib += offOvOff; |
---|
| 947 | |
---|
[602] | 948 | totalNumberCycles++; |
---|
| 949 | |
---|
| 950 | //Quit if enough |
---|
| 951 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 952 | }//end of cycles |
---|
| 953 | |
---|
| 954 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
| 955 | |
---|
| 956 | }//end files |
---|
| 957 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
[542] | 958 | //Normalisation |
---|
[602] | 959 | if(totalNumberCycles > 0){ |
---|
| 960 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
| 961 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
[604] | 962 | meanONovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
| 963 | meanOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
[602] | 964 | } |
---|
[541] | 965 | |
---|
[602] | 966 | {//save results |
---|
| 967 | stringstream tmp; |
---|
| 968 | tmp << totalNumberCycles; |
---|
| 969 | string fileName = para.outPath_+"/rawOnOffDiff_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
[544] | 970 | |
---|
| 971 | POutPersist fos(fileName); |
---|
[602] | 972 | cout << "Save output in " << fileName << endl; |
---|
[544] | 973 | |
---|
[602] | 974 | string tag = "meanNoCalib"; |
---|
| 975 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
| 976 | |
---|
| 977 | tag = "meanOvOffNoCalib"; |
---|
| 978 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
[604] | 979 | |
---|
| 980 | tag = "meanOnovOffNoCalib"; |
---|
| 981 | fos << PPFNameTag(tag) << meanONovOFF_noCalib; |
---|
| 982 | |
---|
| 983 | tag = "meanOffovOffNoCalib"; |
---|
| 984 | fos << PPFNameTag(tag) << meanOFFovOFF_noCalib; |
---|
| 985 | |
---|
[602] | 986 | }//end save |
---|
[544] | 987 | } |
---|
[602] | 988 | //JEC 14/11/11 New meanRawDiffOnOffCycles END |
---|
[544] | 989 | //------------------------------------------------------- |
---|
[602] | 990 | //JEC 14/11/11 Obsolete START |
---|
| 991 | //------------------------------------------------------- |
---|
| 992 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
| 993 | //Used like: |
---|
| 994 | // |
---|
| 995 | // void meanRawDiffOnOffCycles() throw(string) { |
---|
| 996 | // list<string> listOfFiles; |
---|
| 997 | // string directoryName; |
---|
| 998 | // directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 999 | |
---|
| 1000 | // //Make the listing of the directory |
---|
| 1001 | // listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
| 1002 | |
---|
| 1003 | // list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
| 1004 | // iFileEnd = listOfFiles.end(); |
---|
| 1005 | |
---|
| 1006 | // StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
| 1007 | // TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1008 | // uint_4 nSpectra=0; |
---|
| 1009 | // //Loop on files |
---|
| 1010 | // for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1011 | // if (para.debuglev_>90){ |
---|
| 1012 | // cout << "load file <" << *iFile << ">" << endl; |
---|
| 1013 | // } |
---|
| 1014 | // PInPersist fin(*iFile); |
---|
| 1015 | // vector<string> vec = fin.GetNameTags(); |
---|
| 1016 | // list<string> listOfSpectra; |
---|
| 1017 | // //Keep only required PPF objects |
---|
| 1018 | // std::remove_copy_if( |
---|
| 1019 | // vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 1020 | // not1(match) |
---|
| 1021 | // ); |
---|
| 1022 | |
---|
| 1023 | // listOfSpectra.sort(stringCompare); |
---|
| 1024 | // iSpecEnd = listOfSpectra.end(); |
---|
| 1025 | // //Loop of spectra matrix |
---|
| 1026 | // for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
| 1027 | // if (para.debuglev_>90){ |
---|
| 1028 | // cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 1029 | // } |
---|
| 1030 | // TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1031 | // fin.GetObject(aSpec,*iSpec); |
---|
| 1032 | // //How to see if the GetObject is ok?? Ask Reza |
---|
| 1033 | // nSpectra++; |
---|
| 1034 | // meanOfSpectra+=aSpec; |
---|
| 1035 | // }//eo loop on spectra in a file |
---|
| 1036 | // }//eo loop on files |
---|
| 1037 | |
---|
| 1038 | // //Normalisation |
---|
| 1039 | // if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
| 1040 | |
---|
| 1041 | // //Compute the reduced version of the mean and sigma |
---|
| 1042 | // TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 1043 | // TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 1044 | // reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
| 1045 | |
---|
| 1046 | // {//Save the result |
---|
| 1047 | // stringstream tmp; |
---|
| 1048 | // tmp << nSpectra; |
---|
| 1049 | // string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
| 1050 | // cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
| 1051 | // POutPersist fos(fileName); |
---|
| 1052 | |
---|
| 1053 | // string tag = "mean"; |
---|
| 1054 | // fos << PPFNameTag(tag) << meanOfSpectra; |
---|
| 1055 | // tag = "meanred"; |
---|
| 1056 | // fos << PPFNameTag(tag) << meanRedMtx; |
---|
| 1057 | // tag = "sigmared"; |
---|
| 1058 | // fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
| 1059 | // } |
---|
| 1060 | // } |
---|
| 1061 | //JEC 14/11/11 Obsolete END |
---|
| 1062 | //------------------------------------------------------- |
---|
[560] | 1063 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
[544] | 1064 | //Used like: |
---|
| 1065 | // |
---|
[560] | 1066 | void medianRawDiffOnOffCycles() throw(string) { |
---|
[544] | 1067 | list<string> listOfFiles; |
---|
| 1068 | string directoryName; |
---|
| 1069 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
| 1070 | |
---|
| 1071 | //Make the listing of the directory |
---|
| 1072 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
| 1073 | |
---|
| 1074 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
| 1075 | iFileEnd = listOfFiles.end(); |
---|
| 1076 | |
---|
| 1077 | |
---|
[562] | 1078 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
[544] | 1079 | |
---|
| 1080 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
| 1081 | uint_4 nSpectra=0; |
---|
| 1082 | //Loop on files |
---|
| 1083 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1084 | if (para.debuglev_>90){ |
---|
| 1085 | cout << "load file <" << *iFile << ">" << endl; |
---|
| 1086 | } |
---|
| 1087 | PInPersist fin(*iFile); |
---|
| 1088 | vector<string> vec = fin.GetNameTags(); |
---|
| 1089 | list<string> listOfSpectra; |
---|
| 1090 | //Keep only required PPF objects |
---|
| 1091 | std::remove_copy_if( |
---|
| 1092 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
| 1093 | not1(match) |
---|
| 1094 | ); |
---|
| 1095 | |
---|
[560] | 1096 | listOfSpectra.sort(stringCompare); |
---|
[544] | 1097 | iSpecEnd = listOfSpectra.end(); |
---|
| 1098 | //Loop of spectra matrix |
---|
[562] | 1099 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
[544] | 1100 | if (para.debuglev_>90){ |
---|
| 1101 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
| 1102 | } |
---|
| 1103 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1104 | fin.GetObject(aSpec,*iSpec); |
---|
| 1105 | |
---|
[553] | 1106 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
| 1107 | |
---|
[544] | 1108 | nSpectra++; |
---|
| 1109 | }//eo loop on spectra in a file |
---|
| 1110 | }//eo loop on files |
---|
| 1111 | |
---|
| 1112 | |
---|
| 1113 | |
---|
| 1114 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1115 | //Compute the median for each freq. and Channel |
---|
| 1116 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 1117 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
[552] | 1118 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
[544] | 1119 | vector<r_4> tmp; |
---|
| 1120 | tmp0.FillTo(tmp); |
---|
[552] | 1121 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
[544] | 1122 | } |
---|
| 1123 | } |
---|
| 1124 | |
---|
| 1125 | |
---|
| 1126 | //Compute the reduced version of the mean and sigma |
---|
| 1127 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 1128 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
| 1129 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
| 1130 | |
---|
[553] | 1131 | |
---|
[562] | 1132 | sa_size_t f1320=freqToChan(1320.); |
---|
| 1133 | sa_size_t f1345=freqToChan(1345.); |
---|
| 1134 | sa_size_t f1355=freqToChan(1355.); |
---|
| 1135 | sa_size_t f1380=freqToChan(1380.); |
---|
[553] | 1136 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
| 1137 | if (para.debuglev_>9){ |
---|
| 1138 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
| 1139 | } |
---|
| 1140 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
| 1141 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 1142 | double meanMed1; |
---|
| 1143 | double sigmaMed1; |
---|
| 1144 | TVector<r_4> band1; |
---|
| 1145 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
| 1146 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
| 1147 | double meanMed2; |
---|
| 1148 | double sigmaMed2; |
---|
| 1149 | TVector<r_4> band2; |
---|
| 1150 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
| 1151 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
| 1152 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
| 1153 | } |
---|
| 1154 | meanMed.Print(cout); |
---|
[562] | 1155 | cout << endl; |
---|
| 1156 | |
---|
[553] | 1157 | |
---|
| 1158 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
| 1159 | if (para.debuglev_>9){ |
---|
| 1160 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
| 1161 | } |
---|
| 1162 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
[560] | 1163 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
| 1164 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
[553] | 1165 | |
---|
| 1166 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 1167 | double meanSigma; |
---|
| 1168 | double sigmaSigma; |
---|
| 1169 | TVector<r_4> band; |
---|
| 1170 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
| 1171 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
| 1172 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
| 1173 | sigmaMed(iCh) = meanSigma; |
---|
| 1174 | } |
---|
| 1175 | sigmaMed.Print(cout); |
---|
[562] | 1176 | cout << endl; |
---|
| 1177 | |
---|
[553] | 1178 | |
---|
| 1179 | |
---|
| 1180 | if (para.debuglev_>9){ |
---|
| 1181 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
| 1182 | } |
---|
| 1183 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
| 1184 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 1185 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
| 1186 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
| 1187 | } |
---|
| 1188 | |
---|
| 1189 | |
---|
| 1190 | |
---|
[544] | 1191 | {//Save the result |
---|
| 1192 | stringstream tmp; |
---|
| 1193 | tmp << nSpectra; |
---|
| 1194 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
[552] | 1195 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
[542] | 1196 | POutPersist fos(fileName); |
---|
[544] | 1197 | |
---|
| 1198 | string tag = "median"; |
---|
| 1199 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
[553] | 1200 | |
---|
| 1201 | tag = "medianNorm"; |
---|
| 1202 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
| 1203 | |
---|
| 1204 | |
---|
[544] | 1205 | tag = "meanmedred"; |
---|
| 1206 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
| 1207 | tag = "sigmamedred"; |
---|
| 1208 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
[552] | 1209 | tag = "cycleVsfreq"; |
---|
| 1210 | |
---|
| 1211 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
| 1212 | fos << PPFNameTag(tag) << tarr; |
---|
[540] | 1213 | } |
---|
| 1214 | } |
---|
[544] | 1215 | |
---|
[540] | 1216 | //------------------------------------------------------- |
---|
[544] | 1217 | int main(int narg, char* arg[]) { |
---|
[540] | 1218 | |
---|
| 1219 | int rc = 0; //return code |
---|
| 1220 | string msg; //message used in Exceptions |
---|
| 1221 | |
---|
| 1222 | |
---|
[544] | 1223 | |
---|
| 1224 | //default value for initial parameters (see Para structure on top of the file) |
---|
[540] | 1225 | string debuglev = "0"; |
---|
[544] | 1226 | string action = "meanDiffOnOff"; |
---|
[540] | 1227 | string inputPath = "."; |
---|
| 1228 | string outputPath = "."; |
---|
| 1229 | string sourceName = "Abell85"; |
---|
[541] | 1230 | string ppfFile; |
---|
[544] | 1231 | string nSliceInFreq = "32"; |
---|
[560] | 1232 | string typeOfCalib="perRun"; |
---|
[561] | 1233 | string calibFreq = "1346"; |
---|
[562] | 1234 | string calibBandFreq="6.25"; |
---|
| 1235 | string mxcycles; |
---|
| 1236 | |
---|
[540] | 1237 | // bool okarg=false; |
---|
| 1238 | int ka=1; |
---|
[554] | 1239 | while (ka<narg) { |
---|
[551] | 1240 | if (strcmp(arg[ka],"-h")==0) { |
---|
[560] | 1241 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
[562] | 1242 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
---|
[561] | 1243 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
[562] | 1244 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
[577] | 1245 | << " -src [Abell85]\n" |
---|
| 1246 | << " -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
[551] | 1247 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
| 1248 | << " -outPath [.]|<dir of the output> \n" |
---|
| 1249 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
[561] | 1250 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
[551] | 1251 | << " -debug <level> " |
---|
| 1252 | << endl; |
---|
| 1253 | return 0; |
---|
| 1254 | } |
---|
| 1255 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
[540] | 1256 | debuglev=arg[ka+1]; |
---|
| 1257 | ka+=2; |
---|
| 1258 | } |
---|
| 1259 | else if (strcmp(arg[ka],"-act")==0) { |
---|
| 1260 | action=arg[ka+1]; |
---|
| 1261 | ka+=2; |
---|
| 1262 | } |
---|
[561] | 1263 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
| 1264 | calibFreq=arg[ka+1]; |
---|
| 1265 | ka+=2; |
---|
| 1266 | } |
---|
[562] | 1267 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
| 1268 | calibBandFreq=arg[ka+1]; |
---|
| 1269 | ka+=2; |
---|
| 1270 | } |
---|
| 1271 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
| 1272 | mxcycles=arg[ka+1]; |
---|
| 1273 | ka+=2; |
---|
| 1274 | } |
---|
[540] | 1275 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
| 1276 | inputPath=arg[ka+1]; |
---|
| 1277 | ka+=2; |
---|
| 1278 | } |
---|
| 1279 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
| 1280 | outputPath=arg[ka+1]; |
---|
| 1281 | ka+=2; |
---|
| 1282 | } |
---|
[541] | 1283 | else if (strcmp(arg[ka],"-src")==0) { |
---|
[540] | 1284 | sourceName=arg[ka+1]; |
---|
| 1285 | ka+=2; |
---|
| 1286 | } |
---|
[541] | 1287 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
| 1288 | ppfFile=arg[ka+1]; |
---|
[540] | 1289 | ka+=2; |
---|
| 1290 | } |
---|
[544] | 1291 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
| 1292 | nSliceInFreq=arg[ka+1]; |
---|
| 1293 | ka+=2; |
---|
| 1294 | } |
---|
[540] | 1295 | else ka++; |
---|
| 1296 | }//eo while |
---|
| 1297 | |
---|
[544] | 1298 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
| 1299 | para.inPath_ = inputPath; |
---|
| 1300 | para.outPath_ = outputPath; |
---|
[540] | 1301 | para.sourceName_ = sourceName; |
---|
[544] | 1302 | para.ppfFile_ = ppfFile; |
---|
| 1303 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
[561] | 1304 | para.calibFreq_ = calibFreq; |
---|
[562] | 1305 | para.calibBandFreq_ = calibBandFreq; |
---|
| 1306 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
| 1307 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
| 1308 | if (mxcycles != "") { |
---|
| 1309 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
| 1310 | } else { |
---|
| 1311 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
| 1312 | } |
---|
[540] | 1313 | |
---|
| 1314 | cout << "Dump Initial parameters ............" << endl; |
---|
| 1315 | cout << " action = " << action << "\n" |
---|
[562] | 1316 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
[544] | 1317 | << " inputPath = " << para.inPath_ << "\n" |
---|
| 1318 | << " outputPath = " << para.outPath_ << "\n" |
---|
| 1319 | << " sourceName = " << para.sourceName_ << "\n" |
---|
| 1320 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
| 1321 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
[561] | 1322 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
[562] | 1323 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
[544] | 1324 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
[540] | 1325 | cout << "...................................." << endl; |
---|
| 1326 | |
---|
[541] | 1327 | if ( "" == ppfFile ) { |
---|
[560] | 1328 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
[541] | 1329 | << endl; |
---|
| 1330 | return 999; |
---|
| 1331 | } |
---|
| 1332 | |
---|
| 1333 | |
---|
[540] | 1334 | try { |
---|
| 1335 | |
---|
[542] | 1336 | // int b,e; |
---|
| 1337 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
| 1338 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
[540] | 1339 | |
---|
[560] | 1340 | if ( action == "meanRawDiffOnOff" ) { |
---|
| 1341 | meanRawDiffOnOffCycles(); |
---|
| 1342 | } else if (action == "medianRawDiffOnOff") { |
---|
| 1343 | medianRawDiffOnOffCycles(); |
---|
| 1344 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
| 1345 | meanCalibBAODiffOnOffCycles(); |
---|
[544] | 1346 | } else { |
---|
| 1347 | msg = "Unknown action " + action; |
---|
| 1348 | throw msg; |
---|
[540] | 1349 | } |
---|
| 1350 | |
---|
[544] | 1351 | |
---|
[540] | 1352 | } catch (std::exception& sex) { |
---|
| 1353 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
| 1354 | << "\n msg= " << sex.what() << endl; |
---|
| 1355 | rc = 78; |
---|
| 1356 | } |
---|
| 1357 | catch ( string str ) { |
---|
| 1358 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
| 1359 | } |
---|
| 1360 | catch (...) { |
---|
| 1361 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
| 1362 | rc = 79; |
---|
| 1363 | } |
---|
| 1364 | |
---|
| 1365 | return 0; |
---|
| 1366 | |
---|
| 1367 | } |
---|