1 | // Utilisation de SOPHYA pour faciliter les tests ... |
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2 | #include "sopnamsp.h" |
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3 | #include "machdefs.h" |
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4 | #include <dirent.h> |
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5 | #include <matharr.h> |
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6 | |
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7 | // include standard c/c++ |
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8 | #include <regex.h> |
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9 | #include <stdio.h> |
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10 | #include <stdlib.h> |
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11 | #include <limits> |
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12 | #include <iostream> |
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13 | #include <fstream> |
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14 | #include <string> |
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15 | #include <vector> |
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16 | #include <map> |
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17 | #include <functional> |
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18 | #include <algorithm> |
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19 | #include <numeric> |
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20 | #include <list> |
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21 | #include <exception> |
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22 | |
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23 | // include sophya mesure ressource CPU/memoire ... |
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24 | #include "resusage.h" |
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25 | #include "ctimer.h" |
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26 | #include "timing.h" |
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27 | #include "timestamp.h" |
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28 | #include "strutilxx.h" |
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29 | #include "ntuple.h" |
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30 | #include "fioarr.h" |
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31 | #include "tarrinit.h" |
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32 | #include "histinit.h" |
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33 | #include "fitsioserver.h" |
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34 | #include "fiosinit.h" |
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35 | #include "ppersist.h" |
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36 | |
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37 | //----------------------------------------------- |
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38 | //Usage |
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39 | // |
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40 | //./Objs/mergeAnaFiles -act meanRawDiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src NGC4383 -ppfFile dataRaw -debug 1000 -mxcycles 10 |
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41 | //./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log |
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42 | // |
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43 | // |
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44 | //----------------------------------------------- |
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45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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49 | //Input parameters |
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50 | struct Param { |
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51 | int debuglev_; //debug |
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52 | string inPath_; //root directory of the input files |
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53 | string outPath_; //output files are located here |
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54 | string sourceName_; //source name & subdirectory of the input files |
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55 | string ppfFile_; //generic name of the input files |
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56 | int nSliceInFreq_; //used by reduceSpectra() fnc |
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57 | string calibFreq_; //freq. value used for calibration |
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58 | r_4 rcalibFreq_; //float version |
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59 | string calibBandFreq_; //band of freq. used for calibration |
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60 | r_4 rcalibBandFreq_; //float version |
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61 | int maxNumberCycles_;//maximum number of cycles to be treated |
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62 | } para; |
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63 | //-------------------------------------------------------------- |
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64 | //Utility functions |
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65 | // template <class T> |
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66 | // void MeanSigma(TArray<T> const & a, T & mean, T & sig){ |
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67 | // if (a.NbDimensions() < 1) |
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68 | // throw RangeCheckError("MathArray<T>::MeanSigma(TArray<T> const & a..) Not Allocated Array a !"); |
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69 | // const T * pe; |
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70 | // sa_size_t j,k; |
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71 | // mean=0.; |
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72 | // sig = 0.; |
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73 | // T valok; |
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74 | // if (a.AvgStep() > 0) { // regularly spaced elements |
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75 | // sa_size_t step = a.AvgStep(); |
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76 | // sa_size_t maxx = a.Size()*step; |
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77 | // pe = a.Data(); |
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78 | // for(k=0; k<maxx; k+=step ) { |
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79 | // valok = pe[k]; |
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80 | // mean += valok; sig += valok*valok; |
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81 | // } |
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82 | // } |
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83 | // else { // Non regular data spacing ... |
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84 | // int_4 ka = a.MaxSizeKA(); |
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85 | // sa_size_t step = a.Step(ka); |
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86 | // sa_size_t gpas = a.Size(ka)*step; |
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87 | // sa_size_t naxa = a.Size()/a.Size(ka); |
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88 | // for(j=0; j<naxa; j++) { |
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89 | // pe = a.DataBlock().Begin()+a.Offset(ka,j); |
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90 | // for(k=0; k<gpas; k+=step) { |
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91 | // valok = pe[k]; |
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92 | // mean += valok; sig += valok*valok; |
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93 | // } |
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94 | // } |
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95 | // } |
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96 | // T dsz = (T)(a.Size()); |
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97 | // mean /= dsz; |
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98 | // if (dsz > 1.5) { |
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99 | // sig = sig/dsz - mean*mean; |
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100 | // sig *= (dsz/(dsz-1)); |
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101 | // if (sig >= 0.) sig = sqrt(sig); |
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102 | // } |
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103 | // else sig = 0.; |
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104 | // } |
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105 | |
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106 | |
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107 | sa_size_t freqToChan(r_4 f){ |
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108 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
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109 | } |
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110 | //-------- |
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111 | //COMPUTE the mean value on a freq. range for all channels |
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112 | //-------- |
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113 | void meanInRange(const TMatrix<r_4> mtx, |
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114 | sa_size_t chLow, |
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115 | sa_size_t chHigh, |
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116 | TVector<r_4>& vec){ |
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117 | |
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118 | sa_size_t nr = mtx.NRows(); |
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119 | |
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120 | for (sa_size_t ir=0; ir<nr; ir++){ |
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121 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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122 | r_8 mean, sigma; |
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123 | MeanSigma(tmp,mean,sigma); |
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124 | vec(ir) = mean; |
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125 | } |
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126 | } |
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127 | //--------- |
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128 | class median_of_empty_list_exception:public std::exception{ |
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129 | virtual const char* what() const throw() { |
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130 | return "Attempt to take the median of an empty list of numbers. " |
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131 | "The median of an empty list is undefined."; |
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132 | } |
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133 | }; |
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134 | template<class RandAccessIter> |
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135 | double median(RandAccessIter begin, RandAccessIter end) |
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136 | throw(median_of_empty_list_exception){ |
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137 | if(begin == end){ throw median_of_empty_list_exception(); } |
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138 | std::size_t size = end - begin; |
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139 | std::size_t middleIdx = size/2; |
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140 | RandAccessIter target = begin + middleIdx; |
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141 | std::nth_element(begin, target, end); |
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142 | |
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143 | if(size % 2 != 0){ //Odd number of elements |
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144 | return *target; |
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145 | }else{ //Even number of elements |
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146 | double a = *target; |
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147 | RandAccessIter targetNeighbor= target-1; |
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148 | std::nth_element(begin, targetNeighbor, end); |
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149 | return (a+*targetNeighbor)/2.0; |
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150 | } |
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151 | } |
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152 | |
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153 | //------------- |
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154 | //JEC 25/10/11 Perform a median filtering with a sliding window of "halfwidth" half width |
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155 | // It takes care of the edges and is based on the median function (above) |
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156 | void medianFiltering(const TMatrix<r_4> mtx, |
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157 | sa_size_t halfwidth, |
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158 | TMatrix<r_4>& vec) { |
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159 | |
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160 | sa_size_t nr = mtx.NRows(); |
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161 | sa_size_t nc = mtx.NCols(); |
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162 | sa_size_t chMin = 0; |
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163 | sa_size_t chMax = nc-1; |
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164 | |
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165 | for (sa_size_t ir=0; ir<nr; ir++){ |
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166 | for (sa_size_t ic=0; ic<nc; ic++) { |
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167 | sa_size_t chLow = ic-halfwidth; |
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168 | chLow = (chLow >= chMin) ? chLow : chMin; |
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169 | sa_size_t chHigh = ic+halfwidth; |
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170 | chHigh = ( chHigh <= chMax ) ? chHigh : chMax; |
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171 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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172 | vector<r_4> val; |
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173 | tmp.FillTo(val); |
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174 | vec(ir,ic) = median(val.begin(),val.end()); |
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175 | } |
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176 | } |
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177 | } |
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178 | //------------- |
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179 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
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180 | // Skip delimiters at beginning. |
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181 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
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182 | // Find first "non-delimiter". |
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183 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
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184 | |
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185 | while (string::npos != pos || string::npos != lastPos) |
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186 | { |
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187 | // Found a token, add it to the vector. |
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188 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
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189 | // Skip delimiters. Note the "not_of" |
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190 | lastPos = str.find_first_not_of(delimiters, pos); |
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191 | // Find next "non-delimiter" |
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192 | pos = str.find_first_of(delimiters, lastPos); |
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193 | } |
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194 | } |
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195 | //-------------------------------------------------------------- |
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196 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
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197 | int i, w=0, len; |
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198 | char *word = NULL; |
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199 | regex_t rgT; |
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200 | regmatch_t match; |
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201 | regcomp(&rgT,patrn,REG_EXTENDED); |
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202 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
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203 | *begin = (int)match.rm_so; |
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204 | *end = (int)match.rm_eo; |
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205 | len = *end-*begin; |
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206 | word=(char*)malloc(len+1); |
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207 | for (i=*begin; i<*end; i++) { |
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208 | word[w] = string[i]; |
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209 | w++; } |
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210 | word[w]=0; |
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211 | } |
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212 | regfree(&rgT); |
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213 | return word; |
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214 | } |
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215 | //------- |
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216 | sa_size_t round_sa(r_4 r) { |
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217 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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218 | } |
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219 | //----- |
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220 | string StringToLower(string strToConvert){ |
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221 | //change each element of the string to lower case |
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222 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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223 | strToConvert[i] = tolower(strToConvert[i]); |
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224 | } |
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225 | return strToConvert;//return the converted string |
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226 | } |
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227 | //----- |
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228 | bool stringCompare( const string &left, const string &right ){ |
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229 | if( left.size() < right.size() ) |
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230 | return true; |
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231 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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232 | if( tolower( *lit ) < tolower( *rit ) ) |
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233 | return true; |
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234 | else if( tolower( *lit ) > tolower( *rit ) ) |
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235 | return false; |
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236 | return false; |
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237 | } |
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238 | //----- |
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239 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
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240 | list<string> theList; |
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241 | |
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242 | |
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243 | DIR *dip; |
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244 | struct dirent *dit; |
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245 | string msg; string fileName; |
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246 | string fullFileName; |
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247 | size_t found; |
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248 | |
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249 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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250 | msg = "opendir failed on directory "+dir; |
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251 | throw msg; |
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252 | } |
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253 | while ( (dit = readdir(dip)) != NULL ) { |
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254 | fileName = dit->d_name; |
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255 | found=fileName.find(filePettern); |
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256 | if (found != string::npos) { |
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257 | fullFileName = dir + "/"; |
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258 | fullFileName += fileName; |
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259 | theList.push_back(fullFileName); |
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260 | } |
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261 | }//eo while |
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262 | if (closedir(dip) == -1) { |
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263 | msg = "closedir failed on directory "+dir; |
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264 | throw msg; |
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265 | } |
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266 | |
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267 | theList.sort(stringCompare); |
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268 | |
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269 | return theList; |
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270 | |
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271 | } |
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272 | // |
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273 | class StringMatch : public unary_function<string,bool> { |
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274 | public: |
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275 | StringMatch(const string& pattern): pattern_(pattern){} |
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276 | bool operator()(const string& aStr) const { |
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277 | |
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278 | |
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279 | int b,e; |
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280 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
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281 | |
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282 | // cout << "investigate " << aStr << " to find " << pattern_ |
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283 | // << "[" <<b<<","<<e<<"]" |
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284 | // << endl; |
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285 | |
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286 | |
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287 | if (b != 0) return false; |
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288 | if (e != (int)aStr.size()) return false; |
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289 | return true; |
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290 | |
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291 | } |
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292 | private: |
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293 | string pattern_; |
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294 | }; |
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295 | //------------------------------------------------------- |
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296 | //Rebin in frequence + compute mean and sigma |
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297 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
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298 | TMatrix<r_4>& meanMtx, |
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299 | TMatrix<r_4>& sigmaMtx) { |
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300 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
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301 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
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302 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
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303 | sa_size_t freqLow= iSlice*deltaFreq; |
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304 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
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305 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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306 | TVector<r_4> reducedRow; |
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307 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
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308 | double mean; |
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309 | double sigma; |
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310 | MeanSigma(reducedRow,mean,sigma); |
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311 | meanMtx(iCh,iSlice) = mean; |
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312 | sigmaMtx(iCh,iSlice) = sigma; |
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313 | }//eo loop on channels |
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314 | }//eo loop on slices |
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315 | } |
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316 | |
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317 | //AST 18/11/11 |
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318 | //------------------------------------------------------- |
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319 | //Make n-tuple with calibration coefficients |
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320 | // |
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321 | void calibCoeffNtp() throw(string) { |
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322 | list<string> listOfFiles; |
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323 | string directoryName; |
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324 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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325 | |
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326 | //Make the listing of the directory |
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327 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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328 | |
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329 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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330 | iFileEnd = listOfFiles.end(); |
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331 | |
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332 | static const int NINFO=19; |
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333 | char* calibTupleName[NINFO]={"date","run","cycle" |
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334 | ,"meancoeffoff0","meancoeffoff1" |
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335 | ,"meancoeffon0","meancoeffon1" |
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336 | ,"coeffoff0","coeffoff1" |
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337 | ,"coeffon0","coeffon1" |
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338 | ,"invmeancoeffoff0","invmeancoeffoff1" |
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339 | ,"invmeancoeffon0","invmeancoeffon1" |
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340 | ,"invcoeffoff0","invcoeffoff1" |
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341 | ,"invcoeffon0","invcoeffon1" |
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342 | }; |
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343 | NTuple calibcoeffs(NINFO,calibTupleName); |
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344 | r_4 xnt[NINFO]; |
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345 | |
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346 | int totalNumberRuns=0; //total number of runs |
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347 | int totalNumberCycles=0; //total number of cycles for normalisation |
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348 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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349 | if (para.debuglev_>90){ |
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350 | cout << "load file <" << *iFile << ">" << endl; |
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351 | } |
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352 | |
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353 | vector<string> tokens; |
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354 | split(*iFile,"_",tokens); |
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355 | string dateOfRun = tokens[1]; |
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356 | r_4 rdateOfRun = atoi(dateOfRun.c_str()) - 2011*1.e4; |
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357 | |
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358 | if (para.debuglev_>90){ |
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359 | cout << "date <" << dateOfRun << ">" << endl; |
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360 | cout << "rdate <" << rdateOfRun << ">" << endl; |
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361 | } |
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362 | vector<string> tokens2; |
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363 | split(tokens[2],".",tokens2); |
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364 | string srcLower = tokens2[0]; |
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365 | |
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366 | PInPersist fin(*iFile); |
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367 | vector<string> vec = fin.GetNameTags(); |
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368 | |
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369 | vector<string> modeList; |
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370 | modeList.push_back("On"); |
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371 | modeList.push_back("Off"); |
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372 | vector<string>::const_iterator iMode; |
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373 | |
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374 | map<string, list<int> > cycleModeCollect; |
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375 | |
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376 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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377 | list<string> listOfSpectra; |
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378 | //Keep only required PPF objects |
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379 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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380 | std::remove_copy_if( |
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381 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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382 | not1(StringMatch(matchstr)) |
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383 | ); |
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384 | |
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385 | listOfSpectra.sort(stringCompare); |
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386 | iSpecEnd = listOfSpectra.end(); |
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387 | |
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388 | matchstr = "[0-9]+"; |
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389 | //Loop of spectra matrix |
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390 | list<int> listOfCycles; |
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391 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
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392 | int b,e; |
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393 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
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394 | if (para.debuglev_>90){ |
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395 | cout << " spectra <" << *iSpec << ">" << endl; |
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396 | cout << " cycle " << iSpec->substr(b) << endl; |
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397 | } |
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398 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
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399 | }//end loop spectra |
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400 | cycleModeCollect[*iMode] = listOfCycles; |
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401 | }//end of mode |
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402 | |
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403 | //Take the Intersection of the list Of cycles in mode Off and On |
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404 | list<int> commonCycles; |
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405 | set_intersection(cycleModeCollect["On"].begin(), |
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406 | cycleModeCollect["On"].end(), |
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407 | cycleModeCollect["Off"].begin(), |
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408 | cycleModeCollect["Off"].end(), |
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409 | back_inserter(commonCycles) |
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410 | ); |
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411 | |
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412 | if (para.debuglev_>90){ |
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413 | cout << "Liste of cycles common to On & Off: <"; |
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414 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
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415 | cout << *i << " "; |
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416 | } |
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417 | cout << ">" << endl; |
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418 | } |
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419 | |
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420 | // |
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421 | //Load BAO Calibration factors "per Cycle and Channels" |
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422 | //Compute the mean per Cycle to |
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423 | // fill factors "per Run and Channels" with the same cycle list |
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424 | // |
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425 | // |
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426 | //TODO improve the code.... |
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427 | |
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428 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
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429 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
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430 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
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431 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
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432 | |
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433 | string calibFileName; |
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434 | ifstream ifs; |
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435 | sa_size_t nr,nc; //values read |
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436 | |
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437 | //OFF Cycle per Channel |
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438 | calibFileName = directoryName + "/" |
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439 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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440 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
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441 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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442 | ifs.open(calibFileName.c_str()); |
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443 | if ( ! ifs.is_open() ) { |
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444 | throw calibFileName + " cannot be opened..."; |
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445 | } |
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446 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
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447 | if(para.debuglev_>9){ |
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448 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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449 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
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450 | cout << endl; |
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451 | } |
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452 | |
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453 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
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454 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
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455 | {//Compute the mean |
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456 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
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457 | double mean,sigma; |
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458 | MeanSigma(coef,mean,sigma); |
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459 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
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460 | } |
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461 | if(para.debuglev_>9){ |
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462 | cout << "Fill calib. with mean value " << endl; |
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463 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
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464 | cout << endl; |
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465 | } |
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466 | |
---|
467 | TMatrix<r_4> invcalibBAOfactors_Off_Cycle_Ch0(nr,nc); |
---|
468 | invcalibBAOfactors_Off_Cycle_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
469 | {//Compute the inverse value |
---|
470 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
471 | invcalibBAOfactors_Off_Cycle_Ch0.Column(1).SetCst(1); |
---|
472 | invcalibBAOfactors_Off_Cycle_Ch0.Column(1).Div(coef); |
---|
473 | if(para.debuglev_>9){ |
---|
474 | cout << "Fill calib. with inverse value " << endl; |
---|
475 | invcalibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
476 | cout << endl; |
---|
477 | } |
---|
478 | } |
---|
479 | TMatrix<r_4> invcalibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
480 | invcalibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
481 | {//Compute the inverse mean |
---|
482 | TVector<r_4> coef(invcalibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
483 | double mean,sigma; |
---|
484 | MeanSigma(coef,mean,sigma); |
---|
485 | invcalibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
486 | } |
---|
487 | if(para.debuglev_>9){ |
---|
488 | cout << "Fill calib. with inverse mean value " << endl; |
---|
489 | invcalibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
490 | cout << endl; |
---|
491 | } |
---|
492 | ifs.close(); |
---|
493 | // |
---|
494 | calibFileName = directoryName + "/" |
---|
495 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
496 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
497 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
498 | ifs.open(calibFileName.c_str()); |
---|
499 | if ( ! ifs.is_open() ) { |
---|
500 | |
---|
501 | throw calibFileName + " cannot be opened..."; |
---|
502 | } |
---|
503 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
504 | if(para.debuglev_>9){ |
---|
505 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
506 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
507 | cout << endl; |
---|
508 | } |
---|
509 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
510 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
511 | {//Compute the mean |
---|
512 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
513 | double mean,sigma; |
---|
514 | MeanSigma(coef,mean,sigma); |
---|
515 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
516 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
517 | } |
---|
518 | if(para.debuglev_>9){ |
---|
519 | cout << "Fill calib. with mean value " << endl; |
---|
520 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
521 | cout << endl; |
---|
522 | } |
---|
523 | TMatrix<r_4> invcalibBAOfactors_Off_Cycle_Ch1(nr,nc); |
---|
524 | invcalibBAOfactors_Off_Cycle_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
525 | {//Compute the inverse value |
---|
526 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
527 | invcalibBAOfactors_Off_Cycle_Ch1.Column(1).SetCst(1); |
---|
528 | invcalibBAOfactors_Off_Cycle_Ch1.Column(1).Div(coef); |
---|
529 | if(para.debuglev_>9){ |
---|
530 | cout << "Fill calib. with inverse value " << endl; |
---|
531 | invcalibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
532 | cout << endl; |
---|
533 | } |
---|
534 | } |
---|
535 | TMatrix<r_4> invcalibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
536 | invcalibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
537 | {//Compute the inverse mean |
---|
538 | TVector<r_4> coef(invcalibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
539 | double mean,sigma; |
---|
540 | MeanSigma(coef,mean,sigma); |
---|
541 | invcalibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
542 | } |
---|
543 | if(para.debuglev_>9){ |
---|
544 | cout << "Fill calib. with inverse mean value " << endl; |
---|
545 | invcalibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
546 | cout << endl; |
---|
547 | } |
---|
548 | ifs.close(); |
---|
549 | |
---|
550 | //ON Cycle per Channel |
---|
551 | calibFileName = directoryName + "/" |
---|
552 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
553 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
554 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
555 | ifs.open(calibFileName.c_str()); |
---|
556 | if ( ! ifs.is_open() ) { |
---|
557 | |
---|
558 | throw calibFileName + " cannot be opened..."; |
---|
559 | } |
---|
560 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
561 | if(para.debuglev_>9){ |
---|
562 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
563 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
564 | cout << endl; |
---|
565 | } |
---|
566 | |
---|
567 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
568 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
569 | {//Compute the mean |
---|
570 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
571 | double mean,sigma; |
---|
572 | MeanSigma(coef,mean,sigma); |
---|
573 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
574 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
575 | } |
---|
576 | if(para.debuglev_>9){ |
---|
577 | cout << "Fill calib. with mean value " << endl; |
---|
578 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
579 | cout << endl; |
---|
580 | } |
---|
581 | |
---|
582 | TMatrix<r_4> invcalibBAOfactors_On_Cycle_Ch0(nr,nc); |
---|
583 | invcalibBAOfactors_On_Cycle_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
584 | {//Compute the inverse value |
---|
585 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
586 | invcalibBAOfactors_On_Cycle_Ch0.Column(1).SetCst(1); |
---|
587 | invcalibBAOfactors_On_Cycle_Ch0.Column(1).Div(coef); |
---|
588 | if(para.debuglev_>9){ |
---|
589 | cout << "Fill calib. with inverse value " << endl; |
---|
590 | invcalibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
591 | cout << endl; |
---|
592 | } |
---|
593 | } |
---|
594 | TMatrix<r_4> invcalibBAOfactors_On_Run_Ch0(nr,nc); |
---|
595 | invcalibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
596 | {//Compute the inverse mean |
---|
597 | TVector<r_4> coef(invcalibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
598 | double mean,sigma; |
---|
599 | MeanSigma(coef,mean,sigma); |
---|
600 | invcalibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
601 | } |
---|
602 | if(para.debuglev_>9){ |
---|
603 | cout << "Fill calib. with inverse mean value " << endl; |
---|
604 | invcalibBAOfactors_On_Run_Ch0.Print(cout); |
---|
605 | cout << endl; |
---|
606 | } |
---|
607 | ifs.close(); |
---|
608 | |
---|
609 | calibFileName = directoryName + "/" |
---|
610 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
611 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
612 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
613 | ifs.open(calibFileName.c_str()); |
---|
614 | if ( ! ifs.is_open() ) { |
---|
615 | throw calibFileName + " cannot be opened..."; |
---|
616 | } |
---|
617 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
618 | if(para.debuglev_>9){ |
---|
619 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
620 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
621 | cout << endl; |
---|
622 | } |
---|
623 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
624 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
625 | {//Compute the mean |
---|
626 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
627 | double mean,sigma; |
---|
628 | MeanSigma(coef,mean,sigma); |
---|
629 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
630 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
631 | } |
---|
632 | if(para.debuglev_>9){ |
---|
633 | cout << "Fill calib. with mean value " << endl; |
---|
634 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
635 | cout << endl; |
---|
636 | } |
---|
637 | |
---|
638 | TMatrix<r_4> invcalibBAOfactors_On_Cycle_Ch1(nr,nc); |
---|
639 | invcalibBAOfactors_On_Cycle_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
640 | {//Compute the inverse value |
---|
641 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
642 | invcalibBAOfactors_On_Cycle_Ch1.Column(1).SetCst(1); |
---|
643 | invcalibBAOfactors_On_Cycle_Ch1.Column(1).Div(coef); |
---|
644 | if(para.debuglev_>9){ |
---|
645 | cout << "Fill calib. with inverse value " << endl; |
---|
646 | invcalibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
647 | cout << endl; |
---|
648 | } |
---|
649 | } |
---|
650 | TMatrix<r_4> invcalibBAOfactors_On_Run_Ch1(nr,nc); |
---|
651 | invcalibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
652 | {//Compute the inverse mean |
---|
653 | TVector<r_4> coef(invcalibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
654 | double mean,sigma; |
---|
655 | MeanSigma(coef,mean,sigma); |
---|
656 | invcalibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
657 | } |
---|
658 | if(para.debuglev_>9){ |
---|
659 | cout << "Fill calib. with inverse mean value " << endl; |
---|
660 | invcalibBAOfactors_On_Run_Ch1.Print(cout); |
---|
661 | cout << endl; |
---|
662 | } |
---|
663 | ifs.close(); |
---|
664 | //link <cycle> - <calibration coefficient> |
---|
665 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
666 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
667 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
668 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
669 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
670 | |
---|
671 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
672 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
673 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
674 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
675 | |
---|
676 | map<int,r_4> invcalibBAO_Off_Run_Ch0; |
---|
677 | map<int,r_4> invcalibBAO_Off_Run_Ch1; |
---|
678 | map<int,r_4> invcalibBAO_On_Run_Ch0; |
---|
679 | map<int,r_4> invcalibBAO_On_Run_Ch1; |
---|
680 | |
---|
681 | map<int,r_4> invcalibBAO_Off_Cycle_Ch0; |
---|
682 | map<int,r_4> invcalibBAO_Off_Cycle_Ch1; |
---|
683 | map<int,r_4> invcalibBAO_On_Cycle_Ch0; |
---|
684 | map<int,r_4> invcalibBAO_On_Cycle_Ch1; |
---|
685 | |
---|
686 | //per Run based BAO coefficients |
---|
687 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
688 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
689 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
690 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
691 | |
---|
692 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
693 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
694 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
695 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
696 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
697 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
698 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
699 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
700 | |
---|
701 | invcalibBAO_Off_Run_Ch0[(int)invcalibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
702 | = invcalibBAOfactors_Off_Run_Ch0(ir,1); |
---|
703 | invcalibBAO_Off_Cycle_Ch0[(int)invcalibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
704 | = invcalibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
705 | invcalibBAO_Off_Run_Ch1[(int)invcalibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
706 | = invcalibBAOfactors_Off_Run_Ch1(ir,1); |
---|
707 | invcalibBAO_Off_Cycle_Ch1[(int)invcalibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
708 | = invcalibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
709 | }//eo loop on coef Off |
---|
710 | |
---|
711 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
712 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
713 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
714 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
715 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
716 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
717 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
718 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
719 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
720 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
721 | |
---|
722 | invcalibBAO_On_Run_Ch0[(int)invcalibBAOfactors_On_Run_Ch0(ir,0)] |
---|
723 | = invcalibBAOfactors_On_Run_Ch0(ir,1); |
---|
724 | invcalibBAO_On_Cycle_Ch0[(int)invcalibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
725 | = invcalibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
726 | invcalibBAO_On_Run_Ch1[(int)invcalibBAOfactors_On_Run_Ch1(ir,0)] |
---|
727 | = invcalibBAOfactors_On_Run_Ch1(ir,1); |
---|
728 | invcalibBAO_On_Cycle_Ch1[(int)invcalibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
729 | = invcalibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
730 | }//eo loop on coef On |
---|
731 | |
---|
732 | //Loop on cyles |
---|
733 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
734 | |
---|
735 | //Look if the cycle has been calibrated... |
---|
736 | bool isCycleCalibrated = |
---|
737 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
738 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
739 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
740 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
741 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
742 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
743 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
744 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
745 | |
---|
746 | if(para.debuglev_>9) { |
---|
747 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
748 | if (isCycleCalibrated) { |
---|
749 | cout << "Cycle calibrated " << endl; |
---|
750 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
751 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
752 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
753 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
754 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
755 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
756 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
757 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
758 | } else { |
---|
759 | cout << "Cycle NOT calibrated " << endl; |
---|
760 | } |
---|
761 | }//debug |
---|
762 | |
---|
763 | if ( ! isCycleCalibrated ) continue; |
---|
764 | |
---|
765 | totalNumberCycles++; |
---|
766 | //Fill NTuple |
---|
767 | xnt[0] = rdateOfRun; |
---|
768 | xnt[1] = totalNumberRuns; |
---|
769 | xnt[2] = totalNumberCycles; |
---|
770 | xnt[3] = calibBAO_Off_Run_Ch0[*ic]; |
---|
771 | xnt[4] = calibBAO_Off_Run_Ch1[*ic]; |
---|
772 | xnt[5] = calibBAO_On_Run_Ch0[*ic]; |
---|
773 | xnt[6] = calibBAO_On_Run_Ch1[*ic]; |
---|
774 | xnt[7] = calibBAO_Off_Cycle_Ch0[*ic]; |
---|
775 | xnt[8] = calibBAO_Off_Cycle_Ch1[*ic]; |
---|
776 | xnt[9] = calibBAO_On_Cycle_Ch0[*ic]; |
---|
777 | xnt[10] = calibBAO_On_Cycle_Ch1[*ic]; |
---|
778 | xnt[11] = invcalibBAO_Off_Run_Ch0[*ic]; |
---|
779 | xnt[12] = invcalibBAO_Off_Run_Ch1[*ic]; |
---|
780 | xnt[13] = invcalibBAO_On_Run_Ch0[*ic]; |
---|
781 | xnt[14] = invcalibBAO_On_Run_Ch1[*ic]; |
---|
782 | xnt[15] = invcalibBAO_Off_Cycle_Ch0[*ic]; |
---|
783 | xnt[16] = invcalibBAO_Off_Cycle_Ch1[*ic]; |
---|
784 | xnt[17] = invcalibBAO_On_Cycle_Ch0[*ic]; |
---|
785 | xnt[18] = invcalibBAO_On_Cycle_Ch1[*ic]; |
---|
786 | |
---|
787 | calibcoeffs.Fill(xnt); |
---|
788 | |
---|
789 | //Quit if enough |
---|
790 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
791 | |
---|
792 | }//eo loop on cycles |
---|
793 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
794 | totalNumberRuns++; |
---|
795 | }//eo loop on spectra in a file |
---|
796 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
797 | |
---|
798 | {//save the results |
---|
799 | stringstream tmp; |
---|
800 | tmp << totalNumberCycles; |
---|
801 | string fileName = para.outPath_+"/calibcoeffTuple_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
802 | |
---|
803 | POutPersist fos(fileName); |
---|
804 | cout << "Save output in " << fileName << endl; |
---|
805 | |
---|
806 | string tag = "calib"; |
---|
807 | fos << PPFNameTag(tag) << calibcoeffs; |
---|
808 | |
---|
809 | }//end of save |
---|
810 | } |
---|
811 | |
---|
812 | //------------------------------------------------------- |
---|
813 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
---|
814 | // |
---|
815 | void meanCalibBAODiffOnOffCycles() throw(string) { |
---|
816 | |
---|
817 | list<string> listOfFiles; |
---|
818 | string directoryName; |
---|
819 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
820 | |
---|
821 | //Make the listing of the directory |
---|
822 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
823 | |
---|
824 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
825 | iFileEnd = listOfFiles.end(); |
---|
826 | |
---|
827 | //mean ON-OFF over the list of cycles |
---|
828 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
829 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
830 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
831 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
832 | static const int NINFO=25; |
---|
833 | char* onffTupleName[NINFO]={"cycle" |
---|
834 | ,"onoffRaw0","onoffRaw1" |
---|
835 | ,"onoffRun0","onoffRun1" |
---|
836 | ,"onoffCycle0","onoffCycle1" |
---|
837 | ,"onoffRaw01420","onoffRaw11420" |
---|
838 | ,"onoffRun01420","onoffRun11420" |
---|
839 | ,"onoffCycle01420","onoffCycle11420" |
---|
840 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
841 | ,"onoffRun01420side","onoffRun11420side" |
---|
842 | ,"onoffCycle01420side","onoffCycle11420side" |
---|
843 | ,"onoffRaw0f14101415","onoffRaw1f14101415" |
---|
844 | ,"offRaw0f14101415","offRaw1f14101415" |
---|
845 | ,"onRaw0f14101415","onRaw1f14101415" |
---|
846 | }; |
---|
847 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
848 | r_4 xnt[NINFO]; |
---|
849 | |
---|
850 | //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up |
---|
851 | sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
---|
852 | sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
---|
853 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
---|
854 | sa_size_t ch1420Low = freqToChan(1420.4-0.2); |
---|
855 | sa_size_t ch1420High = freqToChan(1420.4+0.2); |
---|
856 | |
---|
857 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
858 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
859 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
860 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
861 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
862 | |
---|
863 | //1400-1420Mhz |
---|
864 | sa_size_t ch1400 = freqToChan(1400); |
---|
865 | // sa_size_t ch1405 = freqToChan(1400); |
---|
866 | sa_size_t ch1410 = freqToChan(1410); |
---|
867 | sa_size_t ch1415 = freqToChan(1415); |
---|
868 | sa_size_t ch1420 = freqToChan(1420); |
---|
869 | |
---|
870 | if (para.debuglev_>0){ |
---|
871 | cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl; |
---|
872 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
873 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
874 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
875 | } |
---|
876 | |
---|
877 | //Loop on files/run |
---|
878 | |
---|
879 | int totalNumberCycles=0; //total number of cycles for normalisation |
---|
880 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
881 | if (para.debuglev_>90){ |
---|
882 | cout << "load file <" << *iFile << ">" << endl; |
---|
883 | } |
---|
884 | |
---|
885 | vector<string> tokens; |
---|
886 | split(*iFile,"_",tokens); |
---|
887 | string dateOfRun = tokens[1]; |
---|
888 | if (para.debuglev_>90){ |
---|
889 | cout << "date <" << dateOfRun << ">" << endl; |
---|
890 | } |
---|
891 | vector<string> tokens2; |
---|
892 | split(tokens[2],".",tokens2); |
---|
893 | string srcLower = tokens2[0]; |
---|
894 | |
---|
895 | PInPersist fin(*iFile); |
---|
896 | vector<string> vec = fin.GetNameTags(); |
---|
897 | |
---|
898 | vector<string> modeList; |
---|
899 | modeList.push_back("On"); |
---|
900 | modeList.push_back("Off"); |
---|
901 | vector<string>::const_iterator iMode; |
---|
902 | |
---|
903 | map<string, list<int> > cycleModeCollect; |
---|
904 | |
---|
905 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
906 | list<string> listOfSpectra; |
---|
907 | //Keep only required PPF objects |
---|
908 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
909 | std::remove_copy_if( |
---|
910 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
911 | not1(StringMatch(matchstr)) |
---|
912 | ); |
---|
913 | |
---|
914 | listOfSpectra.sort(stringCompare); |
---|
915 | iSpecEnd = listOfSpectra.end(); |
---|
916 | |
---|
917 | matchstr = "[0-9]+"; |
---|
918 | //Loop of spectra matrix |
---|
919 | list<int> listOfCycles; |
---|
920 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
921 | int b,e; |
---|
922 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
923 | if (para.debuglev_>90){ |
---|
924 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
925 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
926 | } |
---|
927 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
928 | }//end loop spectra |
---|
929 | cycleModeCollect[*iMode] = listOfCycles; |
---|
930 | }//end of mode |
---|
931 | |
---|
932 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
933 | list<int> commonCycles; |
---|
934 | set_intersection(cycleModeCollect["On"].begin(), |
---|
935 | cycleModeCollect["On"].end(), |
---|
936 | cycleModeCollect["Off"].begin(), |
---|
937 | cycleModeCollect["Off"].end(), |
---|
938 | back_inserter(commonCycles) |
---|
939 | ); |
---|
940 | |
---|
941 | if (para.debuglev_>90){ |
---|
942 | cout << "Liste of cycles common to On & Off: <"; |
---|
943 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
944 | cout << *i << " "; |
---|
945 | } |
---|
946 | cout << ">" << endl; |
---|
947 | } |
---|
948 | |
---|
949 | // |
---|
950 | //Load BAO Calibration factors "per Cycle and Channels" |
---|
951 | //Compute the mean per Cycle to |
---|
952 | // fill factors "per Run and Channels" with the same cycle list |
---|
953 | // |
---|
954 | // |
---|
955 | //TODO improve the code.... |
---|
956 | |
---|
957 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
---|
958 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
---|
959 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
---|
960 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
---|
961 | |
---|
962 | string calibFileName; |
---|
963 | ifstream ifs; |
---|
964 | sa_size_t nr,nc; //values read |
---|
965 | |
---|
966 | //OFF Cycle per Channel |
---|
967 | calibFileName = directoryName + "/" |
---|
968 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
969 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
970 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
971 | ifs.open(calibFileName.c_str()); |
---|
972 | if ( ! ifs.is_open() ) { |
---|
973 | |
---|
974 | throw calibFileName + " cannot be opened..."; |
---|
975 | } |
---|
976 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
977 | if(para.debuglev_>9){ |
---|
978 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
979 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
980 | cout << endl; |
---|
981 | } |
---|
982 | |
---|
983 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
984 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
985 | {//Compute the mean |
---|
986 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
987 | double mean,sigma; |
---|
988 | MeanSigma(coef,mean,sigma); |
---|
989 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
990 | } |
---|
991 | if(para.debuglev_>9){ |
---|
992 | cout << "Fill calib. with mean value " << endl; |
---|
993 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
994 | cout << endl; |
---|
995 | } |
---|
996 | ifs.close(); |
---|
997 | |
---|
998 | // |
---|
999 | calibFileName = directoryName + "/" |
---|
1000 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
1001 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
1002 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1003 | ifs.open(calibFileName.c_str()); |
---|
1004 | if ( ! ifs.is_open() ) { |
---|
1005 | |
---|
1006 | throw calibFileName + " cannot be opened..."; |
---|
1007 | } |
---|
1008 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
1009 | if(para.debuglev_>9){ |
---|
1010 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1011 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
1012 | cout << endl; |
---|
1013 | } |
---|
1014 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
1015 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
1016 | {//Compute the mean |
---|
1017 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
1018 | double mean,sigma; |
---|
1019 | MeanSigma(coef,mean,sigma); |
---|
1020 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1021 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
1022 | } |
---|
1023 | if(para.debuglev_>9){ |
---|
1024 | cout << "Fill calib. with mean value " << endl; |
---|
1025 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
1026 | cout << endl; |
---|
1027 | } |
---|
1028 | ifs.close(); |
---|
1029 | |
---|
1030 | //ON Cycle per Channel |
---|
1031 | calibFileName = directoryName + "/" |
---|
1032 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
1033 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
1034 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1035 | ifs.open(calibFileName.c_str()); |
---|
1036 | if ( ! ifs.is_open() ) { |
---|
1037 | |
---|
1038 | throw calibFileName + " cannot be opened..."; |
---|
1039 | } |
---|
1040 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
1041 | if(para.debuglev_>9){ |
---|
1042 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1043 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
1044 | cout << endl; |
---|
1045 | } |
---|
1046 | |
---|
1047 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
1048 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
1049 | {//Compute the mean |
---|
1050 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
1051 | double mean,sigma; |
---|
1052 | MeanSigma(coef,mean,sigma); |
---|
1053 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1054 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
1055 | } |
---|
1056 | if(para.debuglev_>9){ |
---|
1057 | cout << "Fill calib. with mean value " << endl; |
---|
1058 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
1059 | cout << endl; |
---|
1060 | } |
---|
1061 | ifs.close(); |
---|
1062 | |
---|
1063 | |
---|
1064 | calibFileName = directoryName + "/" |
---|
1065 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
1066 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
1067 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1068 | ifs.open(calibFileName.c_str()); |
---|
1069 | if ( ! ifs.is_open() ) { |
---|
1070 | throw calibFileName + " cannot be opened..."; |
---|
1071 | } |
---|
1072 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
1073 | if(para.debuglev_>9){ |
---|
1074 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1075 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
1076 | cout << endl; |
---|
1077 | } |
---|
1078 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
1079 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
1080 | {//Compute the mean |
---|
1081 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
1082 | double mean,sigma; |
---|
1083 | MeanSigma(coef,mean,sigma); |
---|
1084 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1085 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
1086 | } |
---|
1087 | if(para.debuglev_>9){ |
---|
1088 | cout << "Fill calib. with mean value " << endl; |
---|
1089 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
1090 | cout << endl; |
---|
1091 | } |
---|
1092 | |
---|
1093 | ifs.close(); |
---|
1094 | |
---|
1095 | //link <cycle> - <calibration coefficient> |
---|
1096 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
1097 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
1098 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
1099 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
1100 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
1101 | |
---|
1102 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
1103 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
1104 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
1105 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
1106 | |
---|
1107 | //per Run based BAO coefficients |
---|
1108 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
1109 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
1110 | cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
1111 | << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
1112 | |
---|
1113 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
1114 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
1115 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
1116 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
1117 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
1118 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
1119 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
1120 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
1121 | }//eo loop on coef Off |
---|
1122 | |
---|
1123 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
1124 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
1125 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
1126 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
1127 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
1128 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
1129 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
1130 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
1131 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
1132 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
1133 | }//eo loop on coef On |
---|
1134 | |
---|
1135 | //Loop on cyles |
---|
1136 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
1137 | |
---|
1138 | //Look if the cycle has been calibrated... |
---|
1139 | bool isCycleCalibrated = |
---|
1140 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
1141 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
1142 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
1143 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
1144 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
1145 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
1146 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
1147 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
1148 | |
---|
1149 | if(para.debuglev_>9) { |
---|
1150 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
1151 | if (isCycleCalibrated) { |
---|
1152 | cout << "Cycle calibrated " << endl; |
---|
1153 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
1154 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
1155 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
1156 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
1157 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
1158 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
1159 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
1160 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
1161 | } else { |
---|
1162 | cout << "Cycle << " << *ic <<" NOT calibrated for file " << *iFile << endl; |
---|
1163 | } |
---|
1164 | }//debug |
---|
1165 | |
---|
1166 | |
---|
1167 | if ( ! isCycleCalibrated ) continue; |
---|
1168 | |
---|
1169 | string ppftag; |
---|
1170 | //load ON phase |
---|
1171 | stringstream cycle; |
---|
1172 | cycle << *ic; |
---|
1173 | |
---|
1174 | ppftag = "specRawOn"+cycle.str(); |
---|
1175 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1176 | fin.GetObject(aSpecOn,ppftag); |
---|
1177 | |
---|
1178 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
1179 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
1180 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
1181 | |
---|
1182 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
1183 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
1184 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
1185 | |
---|
1186 | //Load OFF phase |
---|
1187 | ppftag = "specRawOff"+cycle.str(); |
---|
1188 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1189 | fin.GetObject(aSpecOff,ppftag); |
---|
1190 | |
---|
1191 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
1192 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
1193 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
1194 | |
---|
1195 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
1196 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
1197 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
1198 | |
---|
1199 | |
---|
1200 | //Perform the difference ON-OFF with the different calibration options |
---|
1201 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
1202 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
1203 | |
---|
1204 | //JEC 29/10/11 add ON-OFF/OFF |
---|
1205 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
1206 | TMatrix<r_4> aSpecOffFiltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1207 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
1208 | medianFiltering(aSpecOff,halfWidth,aSpecOffFiltered); |
---|
1209 | |
---|
1210 | diffOnOffOvOff_noCalib.Div(aSpecOffFiltered); //division in place |
---|
1211 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
1212 | |
---|
1213 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
1214 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
1215 | |
---|
1216 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
1217 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
1218 | |
---|
1219 | totalNumberCycles++; |
---|
1220 | |
---|
1221 | //Fill NTuple |
---|
1222 | xnt[0] = totalNumberCycles; |
---|
1223 | |
---|
1224 | //Follow up arround the Calibration Freq. |
---|
1225 | TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1226 | meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib); |
---|
1227 | xnt[1] = meanInRange_CalibFreq_noCalib(0); |
---|
1228 | xnt[2] = meanInRange_CalibFreq_noCalib(1); |
---|
1229 | |
---|
1230 | TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
1231 | meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib); |
---|
1232 | xnt[3] = meanInRange_CalibFreq_perRunCalib(0); |
---|
1233 | xnt[4] = meanInRange_CalibFreq_perRunCalib(1); |
---|
1234 | |
---|
1235 | TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
1236 | meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib); |
---|
1237 | xnt[5] = meanInRange_CalibFreq_perCycleCalib(0); |
---|
1238 | xnt[6] = meanInRange_CalibFreq_perCycleCalib(1); |
---|
1239 | |
---|
1240 | |
---|
1241 | //Follow up arround the 1420.4MHz Freq. |
---|
1242 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1243 | meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
1244 | xnt[7] = meanInRange_1420Freq_noCalib(0); |
---|
1245 | xnt[8] = meanInRange_1420Freq_noCalib(1); |
---|
1246 | |
---|
1247 | TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
1248 | meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib); |
---|
1249 | xnt[9] = meanInRange_1420Freq_perRunCalib(0); |
---|
1250 | xnt[10] = meanInRange_1420Freq_perRunCalib(1); |
---|
1251 | |
---|
1252 | TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
1253 | meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib); |
---|
1254 | xnt[11] = meanInRange_1420Freq_perCycleCalib(0); |
---|
1255 | xnt[12] = meanInRange_1420Freq_perCycleCalib(1); |
---|
1256 | |
---|
1257 | |
---|
1258 | //Follow up below the 1420.4MHz Freq. |
---|
1259 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1260 | meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
1261 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1262 | meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
1263 | |
---|
1264 | xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
1265 | xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
1266 | |
---|
1267 | |
---|
1268 | TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS); |
---|
1269 | meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun); |
---|
1270 | TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS); |
---|
1271 | meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun); |
---|
1272 | |
---|
1273 | xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.; |
---|
1274 | xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.; |
---|
1275 | |
---|
1276 | |
---|
1277 | TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
1278 | meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle); |
---|
1279 | TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
1280 | meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle); |
---|
1281 | |
---|
1282 | xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.; |
---|
1283 | xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.; |
---|
1284 | |
---|
1285 | |
---|
1286 | //JEC 25/10/11 follow 1400-1420 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
1287 | TVector<r_4> meanInRange_1400a1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1288 | meanInRange(diffOnOff_noCalib,ch1400,ch1420,meanInRange_1400a1420Freq_noCalib); |
---|
1289 | xnt[19] = meanInRange_1400a1420Freq_noCalib(0); |
---|
1290 | xnt[20] = meanInRange_1400a1420Freq_noCalib(1); |
---|
1291 | |
---|
1292 | //JEC 18/11/11 follow up the 1400-1420MHz OFF only |
---|
1293 | TMatrix<r_4> aSpecOffovOff(aSpecOff,false); |
---|
1294 | aSpecOffovOff.Div(aSpecOffFiltered); |
---|
1295 | |
---|
1296 | TVector<r_4> meanInRange_1410a1415Freq_OFF_noCalib(NUMBER_OF_CHANNELS); |
---|
1297 | // meanInRange(aSpecOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1298 | meanInRange(aSpecOffovOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1299 | |
---|
1300 | xnt[21] = meanInRange_1410a1415Freq_OFF_noCalib(0); |
---|
1301 | xnt[22] = meanInRange_1410a1415Freq_OFF_noCalib(1); |
---|
1302 | |
---|
1303 | TMatrix<r_4> aSpecOnovOff(aSpecOn,false); |
---|
1304 | aSpecOnovOff.Div(aSpecOffFiltered); |
---|
1305 | |
---|
1306 | TVector<r_4> meanInRange_1410a1415Freq_ON_noCalib(NUMBER_OF_CHANNELS); |
---|
1307 | //meanInRange(aSpecOn,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1308 | meanInRange(aSpecOnovOff,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1309 | |
---|
1310 | xnt[23] = meanInRange_1410a1415Freq_ON_noCalib(0); |
---|
1311 | xnt[24] = meanInRange_1410a1415Freq_ON_noCalib(1); |
---|
1312 | |
---|
1313 | //store infos to Ntuple |
---|
1314 | onoffevolution.Fill(xnt); |
---|
1315 | |
---|
1316 | //Quit if enough |
---|
1317 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1318 | |
---|
1319 | }//eo loop on cycles |
---|
1320 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1321 | |
---|
1322 | }//eo loop on spectra in a file |
---|
1323 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
1324 | //Normalisation |
---|
1325 | if(totalNumberCycles > 0){ |
---|
1326 | //JEC 29/10 add ON-OFF/OFF |
---|
1327 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1328 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1329 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
1330 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
1331 | } |
---|
1332 | |
---|
1333 | //Compute the reduced version of the mean and sigma |
---|
1334 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1335 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1336 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
1337 | |
---|
1338 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1339 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1340 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
1341 | |
---|
1342 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1343 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1344 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
1345 | |
---|
1346 | {//save the results |
---|
1347 | stringstream tmp; |
---|
1348 | tmp << totalNumberCycles; |
---|
1349 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1350 | |
---|
1351 | POutPersist fos(fileName); |
---|
1352 | cout << "Save output in " << fileName << endl; |
---|
1353 | |
---|
1354 | string tag = "meanNoCalib"; |
---|
1355 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
1356 | |
---|
1357 | //JEC 29/10/11 |
---|
1358 | tag = "meanOvOffNoCalib"; |
---|
1359 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
1360 | |
---|
1361 | tag = "meanPerRunCalib"; |
---|
1362 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
1363 | tag = "meanPerCycleCalib"; |
---|
1364 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
1365 | |
---|
1366 | tag = "redmeanNoCalib"; |
---|
1367 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
1368 | tag = "redsigmaNoCalib"; |
---|
1369 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
1370 | |
---|
1371 | tag = "redmeanPerRunCalib"; |
---|
1372 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
1373 | tag = "redsigmaPerRunCalib"; |
---|
1374 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
1375 | |
---|
1376 | tag = "redmeanPerCycleCalib"; |
---|
1377 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
1378 | tag = "redsigmaPerCycleCalib"; |
---|
1379 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
1380 | |
---|
1381 | tag = "onoffevol"; |
---|
1382 | fos << PPFNameTag(tag) << onoffevolution; |
---|
1383 | |
---|
1384 | }//end of save |
---|
1385 | |
---|
1386 | |
---|
1387 | } |
---|
1388 | //JEC 14/11/11 New meanRawDiffOnOffCycles START |
---|
1389 | //------------------------------------------------------- |
---|
1390 | //Compute the mean of Diff ON-OFF/OFF from Raw spectra |
---|
1391 | //Used like: |
---|
1392 | // |
---|
1393 | void meanRawDiffOnOffCycles() throw(string) { |
---|
1394 | list<string> listOfFiles; |
---|
1395 | string directoryName; |
---|
1396 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
1397 | |
---|
1398 | //Make the listing of the directory |
---|
1399 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1400 | |
---|
1401 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1402 | iFileEnd = listOfFiles.end(); |
---|
1403 | |
---|
1404 | //mean ON-OFF over the list of cycles |
---|
1405 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/GAIN |
---|
1406 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/Filtered_OFF |
---|
1407 | TMatrix<r_4> meanONovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // ON/Filtered_OFF |
---|
1408 | TMatrix<r_4> meanOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // OFF/Filtered_OFF |
---|
1409 | //Tuple only for RAW things to follow |
---|
1410 | static const int NINFO=11; |
---|
1411 | char* onffTupleName[NINFO]={"cycle" |
---|
1412 | ,"onoffRaw01420","onoffRaw11420" |
---|
1413 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
1414 | ,"onoffRaw0f14101415","onoffRaw1f14101415" |
---|
1415 | ,"offRaw0f14101415","offRaw1f14101415" |
---|
1416 | ,"onRaw0f14101415","onRaw1f14101415" |
---|
1417 | }; |
---|
1418 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
1419 | r_4 xnt[NINFO]; |
---|
1420 | |
---|
1421 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
---|
1422 | sa_size_t ch1420Low = freqToChan(1420.4-0.2); |
---|
1423 | sa_size_t ch1420High = freqToChan(1420.4+0.2); |
---|
1424 | |
---|
1425 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
1426 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
1427 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
1428 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
1429 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
1430 | |
---|
1431 | //1400-1420Mhz |
---|
1432 | sa_size_t ch1400 = freqToChan(1400); |
---|
1433 | // sa_size_t ch1405 = freqToChan(1400); |
---|
1434 | sa_size_t ch1410 = freqToChan(1410); |
---|
1435 | sa_size_t ch1415 = freqToChan(1415); |
---|
1436 | sa_size_t ch1420 = freqToChan(1420); |
---|
1437 | |
---|
1438 | if (para.debuglev_>0){ |
---|
1439 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
1440 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
1441 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
1442 | } |
---|
1443 | |
---|
1444 | int totalNumberCycles=0; //total number of cycles |
---|
1445 | |
---|
1446 | //Loop on files |
---|
1447 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1448 | if (para.debuglev_>90){ |
---|
1449 | cout << "load file <" << *iFile << ">" << endl; |
---|
1450 | } |
---|
1451 | |
---|
1452 | vector<string> tokens; |
---|
1453 | split(*iFile,"_",tokens); |
---|
1454 | string dateOfRun = tokens[1]; |
---|
1455 | if (para.debuglev_>90){ |
---|
1456 | cout << "date <" << dateOfRun << ">" << endl; |
---|
1457 | } |
---|
1458 | vector<string> tokens2; |
---|
1459 | split(tokens[2],".",tokens2); |
---|
1460 | string srcLower = tokens2[0]; |
---|
1461 | |
---|
1462 | PInPersist fin(*iFile); |
---|
1463 | vector<string> vec = fin.GetNameTags(); |
---|
1464 | |
---|
1465 | vector<string> modeList; |
---|
1466 | modeList.push_back("On"); |
---|
1467 | modeList.push_back("Off"); |
---|
1468 | vector<string>::const_iterator iMode; |
---|
1469 | |
---|
1470 | map<string, list<int> > cycleModeCollect; |
---|
1471 | |
---|
1472 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
1473 | list<string> listOfSpectra; |
---|
1474 | //Keep only required PPF objects |
---|
1475 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
1476 | std::remove_copy_if( |
---|
1477 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
1478 | not1(StringMatch(matchstr)) |
---|
1479 | ); |
---|
1480 | |
---|
1481 | listOfSpectra.sort(stringCompare); |
---|
1482 | iSpecEnd = listOfSpectra.end(); |
---|
1483 | |
---|
1484 | matchstr = "[0-9]+"; |
---|
1485 | //Loop of spectra matrix |
---|
1486 | list<int> listOfCycles; |
---|
1487 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
1488 | int b,e; |
---|
1489 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
1490 | if (para.debuglev_>90){ |
---|
1491 | cout << " spectra <" << *iSpec << ">" << endl; |
---|
1492 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
1493 | } |
---|
1494 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
1495 | }//end loop spectra |
---|
1496 | cycleModeCollect[*iMode] = listOfCycles; |
---|
1497 | }//end of mode |
---|
1498 | |
---|
1499 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
1500 | list<int> commonCycles; |
---|
1501 | set_intersection(cycleModeCollect["On"].begin(), |
---|
1502 | cycleModeCollect["On"].end(), |
---|
1503 | cycleModeCollect["Off"].begin(), |
---|
1504 | cycleModeCollect["Off"].end(), |
---|
1505 | back_inserter(commonCycles) |
---|
1506 | ); |
---|
1507 | |
---|
1508 | if (para.debuglev_>90){ |
---|
1509 | cout << "Liste of cycles common to On & Off: <"; |
---|
1510 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
1511 | cout << *i << " "; |
---|
1512 | } |
---|
1513 | cout << ">" << endl; |
---|
1514 | } |
---|
1515 | |
---|
1516 | //Loop on cyles |
---|
1517 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
1518 | |
---|
1519 | // AST 28.11.11 remove non-calibrated cycles for Abell1205 and Abell2440 |
---|
1520 | if ( *ic == 1 && srcLower == "abell1205" ) { |
---|
1521 | if ( dateOfRun == "20110502" || dateOfRun == "20110607" || dateOfRun == "20110818" ) { |
---|
1522 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1523 | continue; |
---|
1524 | } |
---|
1525 | } else if ( *ic == 1 && srcLower == "abell2440" ) { |
---|
1526 | if ( dateOfRun == "20110516" ) { |
---|
1527 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1528 | continue; |
---|
1529 | } |
---|
1530 | } else if ( *ic == 3 && srcLower == "abell1205" ) { |
---|
1531 | if ( dateOfRun == "20110810" ) { |
---|
1532 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1533 | continue; |
---|
1534 | } |
---|
1535 | } |
---|
1536 | |
---|
1537 | string ppftag; |
---|
1538 | //load ON phase |
---|
1539 | stringstream cycle; |
---|
1540 | cycle << *ic; |
---|
1541 | ppftag = "specRawOn"+cycle.str(); |
---|
1542 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1543 | fin.GetObject(aSpecOn,ppftag); |
---|
1544 | |
---|
1545 | //Load OFF phase |
---|
1546 | ppftag = "specRawOff"+cycle.str(); |
---|
1547 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1548 | fin.GetObject(aSpecOff,ppftag); |
---|
1549 | |
---|
1550 | //Perform the difference ON-OFF |
---|
1551 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
1552 | |
---|
1553 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
1554 | |
---|
1555 | //JEC 29/10/11 add ON-OFF/OFF |
---|
1556 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
1557 | TMatrix<r_4> aSpecOffFiltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1558 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
1559 | medianFiltering(aSpecOff,halfWidth,aSpecOffFiltered); |
---|
1560 | |
---|
1561 | diffOnOffOvOff_noCalib.Div(aSpecOffFiltered); //division in place |
---|
1562 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
1563 | |
---|
1564 | //JEC 15/11/11 add ON/OFF and OFF/OFF |
---|
1565 | TMatrix<r_4> onOvOff(aSpecOn,false); |
---|
1566 | onOvOff.Div(aSpecOffFiltered); |
---|
1567 | meanONovOFF_noCalib += onOvOff; |
---|
1568 | |
---|
1569 | TMatrix<r_4> offOvOff(aSpecOff,false); |
---|
1570 | offOvOff.Div(aSpecOffFiltered); |
---|
1571 | meanOFFovOFF_noCalib += offOvOff; |
---|
1572 | |
---|
1573 | totalNumberCycles++; |
---|
1574 | |
---|
1575 | //Fill NTuple |
---|
1576 | xnt[0] = totalNumberCycles; |
---|
1577 | |
---|
1578 | //Follow up arround the 1420.4MHz Freq. |
---|
1579 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1580 | meanInRange(diffOnOffOvOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
1581 | xnt[1] = meanInRange_1420Freq_noCalib(0); |
---|
1582 | xnt[2] = meanInRange_1420Freq_noCalib(1); |
---|
1583 | |
---|
1584 | |
---|
1585 | //Follow up below the 1420.4MHz Freq. |
---|
1586 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1587 | meanInRange(diffOnOffOvOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
1588 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1589 | meanInRange(diffOnOffOvOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
1590 | |
---|
1591 | xnt[3] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
1592 | xnt[4] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
1593 | |
---|
1594 | |
---|
1595 | //JEC 25/10/11 follow 1410-1415 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
1596 | TVector<r_4> meanInRange_1410a1415Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1597 | meanInRange(diffOnOffOvOff_noCalib,ch1410,ch1415,meanInRange_1410a1415Freq_noCalib); |
---|
1598 | xnt[5] = meanInRange_1410a1415Freq_noCalib(0); |
---|
1599 | xnt[6] = meanInRange_1410a1415Freq_noCalib(1); |
---|
1600 | |
---|
1601 | //JEC 18/11/11 follow up the 1410-1415MHz OFF only |
---|
1602 | TMatrix<r_4> aSpecOffovOff(aSpecOff,false); |
---|
1603 | aSpecOffovOff.Div(aSpecOffFiltered); |
---|
1604 | |
---|
1605 | TVector<r_4> meanInRange_1410a1415Freq_OFF_noCalib(NUMBER_OF_CHANNELS); |
---|
1606 | meanInRange(aSpecOffovOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1607 | |
---|
1608 | xnt[7] = meanInRange_1410a1415Freq_OFF_noCalib(0); |
---|
1609 | xnt[8] = meanInRange_1410a1415Freq_OFF_noCalib(1); |
---|
1610 | |
---|
1611 | TMatrix<r_4> aSpecOnovOff(aSpecOn,false); |
---|
1612 | aSpecOnovOff.Div(aSpecOffFiltered); |
---|
1613 | |
---|
1614 | TVector<r_4> meanInRange_1410a1415Freq_ON_noCalib(NUMBER_OF_CHANNELS); |
---|
1615 | meanInRange(aSpecOnovOff,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1616 | |
---|
1617 | xnt[9] = meanInRange_1410a1415Freq_ON_noCalib(0); |
---|
1618 | xnt[10] = meanInRange_1410a1415Freq_ON_noCalib(1); |
---|
1619 | |
---|
1620 | //store infos to Ntuple |
---|
1621 | onoffevolution.Fill(xnt); |
---|
1622 | |
---|
1623 | //Quit if enough |
---|
1624 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1625 | }//end of cycles |
---|
1626 | |
---|
1627 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1628 | |
---|
1629 | }//end files |
---|
1630 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
1631 | //Normalisation |
---|
1632 | if(totalNumberCycles > 0){ |
---|
1633 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1634 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1635 | meanONovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1636 | meanOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1637 | } |
---|
1638 | |
---|
1639 | {//save results |
---|
1640 | stringstream tmp; |
---|
1641 | tmp << totalNumberCycles; |
---|
1642 | string fileName = para.outPath_+"/rawOnOffDiff_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1643 | |
---|
1644 | POutPersist fos(fileName); |
---|
1645 | cout << "Save output in " << fileName << endl; |
---|
1646 | |
---|
1647 | string tag = "meanNoCalib"; |
---|
1648 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
1649 | |
---|
1650 | tag = "meanOvOffNoCalib"; |
---|
1651 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
1652 | |
---|
1653 | tag = "meanOnovOffNoCalib"; |
---|
1654 | fos << PPFNameTag(tag) << meanONovOFF_noCalib; |
---|
1655 | |
---|
1656 | tag = "meanOffovOffNoCalib"; |
---|
1657 | fos << PPFNameTag(tag) << meanOFFovOFF_noCalib; |
---|
1658 | |
---|
1659 | tag = "onoffevol"; |
---|
1660 | fos << PPFNameTag(tag) << onoffevolution; |
---|
1661 | |
---|
1662 | }//end save |
---|
1663 | |
---|
1664 | |
---|
1665 | } |
---|
1666 | //JEC 14/11/11 New meanRawDiffOnOffCycles END |
---|
1667 | //------------------------------------------------------- |
---|
1668 | //JEC 14/11/11 Obsolete START |
---|
1669 | //------------------------------------------------------- |
---|
1670 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
1671 | //Used like: |
---|
1672 | // |
---|
1673 | // void meanRawDiffOnOffCycles() throw(string) { |
---|
1674 | // list<string> listOfFiles; |
---|
1675 | // string directoryName; |
---|
1676 | // directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
1677 | |
---|
1678 | // //Make the listing of the directory |
---|
1679 | // listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1680 | |
---|
1681 | // list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1682 | // iFileEnd = listOfFiles.end(); |
---|
1683 | |
---|
1684 | // StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
1685 | // TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1686 | // uint_4 nSpectra=0; |
---|
1687 | // //Loop on files |
---|
1688 | // for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1689 | // if (para.debuglev_>90){ |
---|
1690 | // cout << "load file <" << *iFile << ">" << endl; |
---|
1691 | // } |
---|
1692 | // PInPersist fin(*iFile); |
---|
1693 | // vector<string> vec = fin.GetNameTags(); |
---|
1694 | // list<string> listOfSpectra; |
---|
1695 | // //Keep only required PPF objects |
---|
1696 | // std::remove_copy_if( |
---|
1697 | // vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
1698 | // not1(match) |
---|
1699 | // ); |
---|
1700 | |
---|
1701 | // listOfSpectra.sort(stringCompare); |
---|
1702 | // iSpecEnd = listOfSpectra.end(); |
---|
1703 | // //Loop of spectra matrix |
---|
1704 | // for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
1705 | // if (para.debuglev_>90){ |
---|
1706 | // cout << " spactra <" << *iSpec << ">" << endl; |
---|
1707 | // } |
---|
1708 | // TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1709 | // fin.GetObject(aSpec,*iSpec); |
---|
1710 | // //How to see if the GetObject is ok?? Ask Reza |
---|
1711 | // nSpectra++; |
---|
1712 | // meanOfSpectra+=aSpec; |
---|
1713 | // }//eo loop on spectra in a file |
---|
1714 | // }//eo loop on files |
---|
1715 | |
---|
1716 | // //Normalisation |
---|
1717 | // if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
1718 | |
---|
1719 | // //Compute the reduced version of the mean and sigma |
---|
1720 | // TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1721 | // TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1722 | // reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
1723 | |
---|
1724 | // {//Save the result |
---|
1725 | // stringstream tmp; |
---|
1726 | // tmp << nSpectra; |
---|
1727 | // string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1728 | // cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
1729 | // POutPersist fos(fileName); |
---|
1730 | |
---|
1731 | // string tag = "mean"; |
---|
1732 | // fos << PPFNameTag(tag) << meanOfSpectra; |
---|
1733 | // tag = "meanred"; |
---|
1734 | // fos << PPFNameTag(tag) << meanRedMtx; |
---|
1735 | // tag = "sigmared"; |
---|
1736 | // fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
1737 | // } |
---|
1738 | // } |
---|
1739 | //JEC 14/11/11 Obsolete END |
---|
1740 | //------------------------------------------------------- |
---|
1741 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
1742 | //Used like: |
---|
1743 | // |
---|
1744 | void medianRawDiffOnOffCycles() throw(string) { |
---|
1745 | list<string> listOfFiles; |
---|
1746 | string directoryName; |
---|
1747 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
1748 | |
---|
1749 | //Make the listing of the directory |
---|
1750 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1751 | |
---|
1752 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1753 | iFileEnd = listOfFiles.end(); |
---|
1754 | |
---|
1755 | |
---|
1756 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
1757 | |
---|
1758 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
1759 | uint_4 nSpectra=0; |
---|
1760 | //Loop on files |
---|
1761 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1762 | if (para.debuglev_>90){ |
---|
1763 | cout << "load file <" << *iFile << ">" << endl; |
---|
1764 | } |
---|
1765 | PInPersist fin(*iFile); |
---|
1766 | vector<string> vec = fin.GetNameTags(); |
---|
1767 | list<string> listOfSpectra; |
---|
1768 | //Keep only required PPF objects |
---|
1769 | std::remove_copy_if( |
---|
1770 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
1771 | not1(match) |
---|
1772 | ); |
---|
1773 | |
---|
1774 | listOfSpectra.sort(stringCompare); |
---|
1775 | iSpecEnd = listOfSpectra.end(); |
---|
1776 | //Loop of spectra matrix |
---|
1777 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
1778 | if (para.debuglev_>90){ |
---|
1779 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
1780 | } |
---|
1781 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1782 | fin.GetObject(aSpec,*iSpec); |
---|
1783 | |
---|
1784 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
1785 | |
---|
1786 | nSpectra++; |
---|
1787 | }//eo loop on spectra in a file |
---|
1788 | }//eo loop on files |
---|
1789 | |
---|
1790 | |
---|
1791 | |
---|
1792 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1793 | //Compute the median for each freq. and Channel |
---|
1794 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
1795 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
1796 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
1797 | vector<r_4> tmp; |
---|
1798 | tmp0.FillTo(tmp); |
---|
1799 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
1800 | } |
---|
1801 | } |
---|
1802 | |
---|
1803 | |
---|
1804 | //Compute the reduced version of the mean and sigma |
---|
1805 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1806 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1807 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
1808 | |
---|
1809 | |
---|
1810 | sa_size_t f1320=freqToChan(1320.); |
---|
1811 | sa_size_t f1345=freqToChan(1345.); |
---|
1812 | sa_size_t f1355=freqToChan(1355.); |
---|
1813 | sa_size_t f1380=freqToChan(1380.); |
---|
1814 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
1815 | if (para.debuglev_>9){ |
---|
1816 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
1817 | } |
---|
1818 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
1819 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1820 | double meanMed1; |
---|
1821 | double sigmaMed1; |
---|
1822 | TVector<r_4> band1; |
---|
1823 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
1824 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
1825 | double meanMed2; |
---|
1826 | double sigmaMed2; |
---|
1827 | TVector<r_4> band2; |
---|
1828 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
1829 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
1830 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
1831 | } |
---|
1832 | meanMed.Print(cout); |
---|
1833 | cout << endl; |
---|
1834 | |
---|
1835 | |
---|
1836 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
1837 | if (para.debuglev_>9){ |
---|
1838 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
1839 | } |
---|
1840 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
1841 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
1842 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
1843 | |
---|
1844 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1845 | double meanSigma; |
---|
1846 | double sigmaSigma; |
---|
1847 | TVector<r_4> band; |
---|
1848 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
1849 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
1850 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
1851 | sigmaMed(iCh) = meanSigma; |
---|
1852 | } |
---|
1853 | sigmaMed.Print(cout); |
---|
1854 | cout << endl; |
---|
1855 | |
---|
1856 | |
---|
1857 | |
---|
1858 | if (para.debuglev_>9){ |
---|
1859 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
1860 | } |
---|
1861 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
1862 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1863 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
1864 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
1865 | } |
---|
1866 | |
---|
1867 | |
---|
1868 | |
---|
1869 | {//Save the result |
---|
1870 | stringstream tmp; |
---|
1871 | tmp << nSpectra; |
---|
1872 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1873 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
1874 | POutPersist fos(fileName); |
---|
1875 | |
---|
1876 | string tag = "median"; |
---|
1877 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
1878 | |
---|
1879 | tag = "medianNorm"; |
---|
1880 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
1881 | |
---|
1882 | |
---|
1883 | tag = "meanmedred"; |
---|
1884 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
1885 | tag = "sigmamedred"; |
---|
1886 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
1887 | tag = "cycleVsfreq"; |
---|
1888 | |
---|
1889 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
1890 | fos << PPFNameTag(tag) << tarr; |
---|
1891 | } |
---|
1892 | } |
---|
1893 | |
---|
1894 | //------------------------------------------------------- |
---|
1895 | int main(int narg, char* arg[]) { |
---|
1896 | |
---|
1897 | int rc = 0; //return code |
---|
1898 | string msg; //message used in Exceptions |
---|
1899 | |
---|
1900 | |
---|
1901 | |
---|
1902 | //default value for initial parameters (see Para structure on top of the file) |
---|
1903 | string debuglev = "0"; |
---|
1904 | string action = "meanDiffOnOff"; |
---|
1905 | string inputPath = "."; |
---|
1906 | string outputPath = "."; |
---|
1907 | string sourceName = "Abell85"; |
---|
1908 | string ppfFile; |
---|
1909 | string nSliceInFreq = "32"; |
---|
1910 | string typeOfCalib="perRun"; |
---|
1911 | string calibFreq = "1346"; |
---|
1912 | string calibBandFreq="6.25"; |
---|
1913 | string mxcycles; |
---|
1914 | |
---|
1915 | // bool okarg=false; |
---|
1916 | int ka=1; |
---|
1917 | while (ka<narg) { |
---|
1918 | if (strcmp(arg[ka],"-h")==0) { |
---|
1919 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
1920 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
---|
1921 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
1922 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
1923 | << " -src [Abell85]\n" |
---|
1924 | << " -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
1925 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
1926 | << " -outPath [.]|<dir of the output> \n" |
---|
1927 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
1928 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
1929 | << " -debug <level> " |
---|
1930 | << endl; |
---|
1931 | return 0; |
---|
1932 | } |
---|
1933 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
1934 | debuglev=arg[ka+1]; |
---|
1935 | ka+=2; |
---|
1936 | } |
---|
1937 | else if (strcmp(arg[ka],"-act")==0) { |
---|
1938 | action=arg[ka+1]; |
---|
1939 | ka+=2; |
---|
1940 | } |
---|
1941 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
1942 | calibFreq=arg[ka+1]; |
---|
1943 | ka+=2; |
---|
1944 | } |
---|
1945 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
1946 | calibBandFreq=arg[ka+1]; |
---|
1947 | ka+=2; |
---|
1948 | } |
---|
1949 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
1950 | mxcycles=arg[ka+1]; |
---|
1951 | ka+=2; |
---|
1952 | } |
---|
1953 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
1954 | inputPath=arg[ka+1]; |
---|
1955 | ka+=2; |
---|
1956 | } |
---|
1957 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
1958 | outputPath=arg[ka+1]; |
---|
1959 | ka+=2; |
---|
1960 | } |
---|
1961 | else if (strcmp(arg[ka],"-src")==0) { |
---|
1962 | sourceName=arg[ka+1]; |
---|
1963 | ka+=2; |
---|
1964 | } |
---|
1965 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
1966 | ppfFile=arg[ka+1]; |
---|
1967 | ka+=2; |
---|
1968 | } |
---|
1969 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
1970 | nSliceInFreq=arg[ka+1]; |
---|
1971 | ka+=2; |
---|
1972 | } |
---|
1973 | else ka++; |
---|
1974 | }//eo while |
---|
1975 | |
---|
1976 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
1977 | para.inPath_ = inputPath; |
---|
1978 | para.outPath_ = outputPath; |
---|
1979 | para.sourceName_ = sourceName; |
---|
1980 | para.ppfFile_ = ppfFile; |
---|
1981 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
1982 | para.calibFreq_ = calibFreq; |
---|
1983 | para.calibBandFreq_ = calibBandFreq; |
---|
1984 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
1985 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
1986 | if (mxcycles != "") { |
---|
1987 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
1988 | } else { |
---|
1989 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
1990 | } |
---|
1991 | |
---|
1992 | cout << "Dump Initial parameters ............" << endl; |
---|
1993 | cout << " action = " << action << "\n" |
---|
1994 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
1995 | << " inputPath = " << para.inPath_ << "\n" |
---|
1996 | << " outputPath = " << para.outPath_ << "\n" |
---|
1997 | << " sourceName = " << para.sourceName_ << "\n" |
---|
1998 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
1999 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
2000 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
2001 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
2002 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
2003 | cout << "...................................." << endl; |
---|
2004 | |
---|
2005 | if ( "" == ppfFile ) { |
---|
2006 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
2007 | << endl; |
---|
2008 | return 999; |
---|
2009 | } |
---|
2010 | |
---|
2011 | |
---|
2012 | try { |
---|
2013 | |
---|
2014 | // int b,e; |
---|
2015 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
2016 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
2017 | |
---|
2018 | if ( action == "meanRawDiffOnOff" ) { |
---|
2019 | meanRawDiffOnOffCycles(); |
---|
2020 | } else if (action == "medianRawDiffOnOff") { |
---|
2021 | medianRawDiffOnOffCycles(); |
---|
2022 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
2023 | meanCalibBAODiffOnOffCycles(); |
---|
2024 | } else { |
---|
2025 | msg = "Unknown action " + action; |
---|
2026 | throw msg; |
---|
2027 | } |
---|
2028 | |
---|
2029 | |
---|
2030 | } catch (std::exception& sex) { |
---|
2031 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
2032 | << "\n msg= " << sex.what() << endl; |
---|
2033 | rc = 78; |
---|
2034 | } |
---|
2035 | catch ( string str ) { |
---|
2036 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
2037 | } |
---|
2038 | catch (...) { |
---|
2039 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
2040 | rc = 79; |
---|
2041 | } |
---|
2042 | |
---|
2043 | return 0; |
---|
2044 | |
---|
2045 | } |
---|