| 1 | #!/bin/sh -xvf |
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| 2 | #Basic tuning of system fuction used. |
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| 3 | AWK=/bin/awk |
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| 4 | SED=/bin/sed |
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| 5 | GREP=/bin/grep |
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| 6 | WC=/usr/bin/wc |
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| 7 | RM=/bin/rm |
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| 8 | CAT=/bin/cat |
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| 9 | TOUCH=/bin/touch |
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| 10 | DATE=/bin/date |
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| 11 | ECHO=/bin/echo |
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| 12 | LS=/bin/ls |
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| 13 | MKDIR=/bin/mkdir |
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| 14 | TR=/usr/bin/tr |
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| 15 | FIND=/usr/bin/find |
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| 16 | PRINTF=/usr/bin/printf |
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| 17 | XARGS=/usr/bin/xargs |
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| 18 | SORT=/bin/sort |
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| 19 | QSUB=qsub |
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| 20 | |
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| 21 | DefaultIFS=$' \t\n' |
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| 22 | IFS=$DefaultIFS |
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| 23 | |
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| 24 | |
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| 25 | scriptName="`basename $0`" |
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| 26 | $ECHO "Processing script ${scriptName} at `date`" |
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| 27 | ###### |
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| 28 | # Local functions |
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| 29 | ###### |
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| 30 | usage() { |
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| 31 | echo "usage: $scriptName <source> <YYYYMMDD-directory> <type of process>" |
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| 32 | echo " -<source> as Abell85" |
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| 33 | echo " -<YYYYMMDD-directory> as 20110428" |
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| 34 | echo " -<type of process> as GAIN|CALIBON|CALIBOFF|ON|OFF" |
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| 35 | } |
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| 36 | ###### |
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| 37 | # argument test |
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| 38 | ###### |
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| 39 | |
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| 40 | #Process cmd line args: the -src option is mandatory (source name as Abell85) |
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| 41 | sourceRadio= |
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| 42 | dateSelected= |
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| 43 | typeofproc= |
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| 44 | #use -sim option to simulate processing (debug the script as if...) |
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| 45 | simulationMode=Off |
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| 46 | # |
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| 47 | #first and last cycle to process |
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| 48 | # |
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| 49 | firstCycle= |
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| 50 | lastCycle= |
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| 51 | while [ $# -gt 0 ] |
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| 52 | do |
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| 53 | case "$1" in |
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| 54 | -src) sourceRadio=$2; shift;; |
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| 55 | -date) dateSelected=$2; shift;; |
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| 56 | -type) typeofproc=$2; shift;; |
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| 57 | -fcycle) firstCycle=$2; shift;; |
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| 58 | -lcycle) lastCycle=$2; shift;; |
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| 59 | -sim) simulationMode=On;; |
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| 60 | -h) |
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| 61 | echo >&2 \ |
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| 62 | "usage: $0 -src souce -date YYYYMMDD -type type [-fcycle firstCycle] [-lcycle lastCycle] [-sim to trig simulation mode]" |
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| 63 | exit 1;; |
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| 64 | *) break;; # terminate while loop |
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| 65 | esac |
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| 66 | shift |
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| 67 | done |
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| 68 | |
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| 69 | #Check input |
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| 70 | |
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| 71 | if [ "<${sourceRadio}>" = "<>" ]; then |
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| 72 | $ECHO "FATAL: You have forgotten to select the source option (-src)" |
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| 73 | exit 1 |
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| 74 | fi |
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| 75 | |
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| 76 | if [ "<${dateSelected}>" = "<>" ]; then |
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| 77 | $ECHO "FATAL: You have forgotten to select the date option (-date)" |
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| 78 | exit 1 |
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| 79 | fi |
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| 80 | |
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| 81 | if [ "<${typeofproc}>" = "<>" ]; then |
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| 82 | $ECHO "FATAL: You have forgotten to select the type option (-type)" |
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| 83 | exit 1 |
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| 84 | fi |
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| 85 | |
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| 86 | |
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| 87 | |
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| 88 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" ` |
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| 89 | |
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| 90 | |
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| 91 | #Path to public backupable path |
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| 92 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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| 93 | |
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| 94 | #temporary files to synchronize scripts |
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| 95 | tmppublicpath=${TMPPUBLICPATH} |
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| 96 | $LS -l ${tmppublicpath} > /dev/null |
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| 97 | |
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| 98 | |
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| 99 | #Path where the job will do temporary IO |
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| 100 | if [ ${ENVIRONMENT} = "INTERACTIVE" ]; then |
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| 101 | iojobpath="/sps/baoradio/AmasNancay/JEC" |
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| 102 | $MKDIR -p $iojobpath |
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| 103 | elif [ ${ENVIRONMENT} = "BATCH" ] ; then |
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| 104 | iojobpath=${TMPBATCH} |
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| 105 | else |
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| 106 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed" |
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| 107 | touch ${tmppublicpath}/proc_script.finished |
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| 108 | exit 1 |
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| 109 | fi |
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| 110 | cd ${iojobpath} |
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| 111 | |
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| 112 | localpath="${sourceRadio}/${dateSelected}${srclower}" |
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| 113 | $MKDIR -p ./${localpath} |
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| 114 | cd ./${localpath} |
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| 115 | mainDirectory=`pwd` |
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| 116 | |
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| 117 | |
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| 118 | #Path of the utility scripts |
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| 119 | scriptpath="/afs/in2p3.fr/home/c/campagne/private/work/AmasNancay" |
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| 120 | |
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| 121 | |
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| 122 | #select file per cycle |
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| 123 | #$ECHO "Select files process..." |
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| 124 | #keep only lines with structure: cycle_number first,last,step |
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| 125 | #Get sca files |
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| 126 | $ECHO "DEBUG (${scriptName}): START call getscafiles.sh ${sourceRadio} ${dateSelected}" |
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| 127 | OUT1=./getScaStatus.$$ |
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| 128 | #JEC 29/9/11 avoid finished stuff |
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| 129 | #$RM -f ${tmppublicpath}/getscafiles.finished |
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| 130 | ${scriptpath}/getscafiles.sh ${sourceRadio} ${dateSelected} > ${OUT1} 2>&1 |
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| 131 | #while [ ! -f "${tmppublicpath}/getscafiles.finished" ]; do |
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| 132 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getscafiles.finished" |
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| 133 | # date +%T |
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| 134 | # sleep 30 |
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| 135 | #done |
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| 136 | #$RM -f ${tmppublicpath}/getscafiles.finished |
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| 137 | $ECHO "DEBUG (${scriptName}): END" |
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| 138 | |
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| 139 | |
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| 140 | getScaStatus=`$GREP "^\(FATAL\|ERROR\)" ${OUT1}` |
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| 141 | |
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| 142 | if [ "<${getScaStatus}>" != "<>" ]; then |
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| 143 | $ECHO "FATAL (${scriptName}): error to get sca file for $sourceRadio $dateSelected" |
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| 144 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}" |
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| 145 | $CAT ${OUT1} |
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| 146 | $ECHO "DEBUG (${scriptName}): END" |
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| 147 | #JEC 29/9/11 avoid finished stuff |
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| 148 | # touch ${tmppublicpath}/proc_script.finished |
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| 149 | exit 1 |
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| 150 | fi |
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| 151 | |
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| 152 | |
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| 153 | scaFileSummarized=`$FIND . -name "sca*.sum" -print` |
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| 154 | if [ "<${scaFileSummarized}>" = "<>" ]; then |
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| 155 | $ECHO "FATAL (${scriptName}): strange sca file summarized not available: $sourceRadio $dateSelected" |
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| 156 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}" |
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| 157 | $CAT ${OUT1} |
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| 158 | $ECHO "DEBUG (${scriptName}): END" |
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| 159 | #JEC 29/9/11 avoid finished stuff |
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| 160 | # touch ${tmppublicpath}/proc_script.finished |
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| 161 | exit 1 |
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| 162 | fi |
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| 163 | $RM ${OUT1} |
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| 164 | |
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| 165 | scaFileSummarized=`basename $scaFileSummarized` |
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| 166 | |
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| 167 | #set Irods environment |
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| 168 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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| 169 | #download header files to be used for signal files selction |
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| 170 | $MKDIR -p ./Fiber1 |
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| 171 | dirFiberfile=`pwd`/Fiber1 |
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| 172 | |
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| 173 | dirIrods="/baoradio/data/AmasNancay/${sourceRadio}/${dateSelected}${srclower}/Fiber1" |
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| 174 | |
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| 175 | listOfFiles=( `ils ${dirIrods} | $GREP -i "header" | $XARGS -i basename {} | $SORT -k1.7n` ) |
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| 176 | IFS=' |
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| 177 | ' |
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| 178 | listOfFiles=( $( $PRINTF "%s\n" "${listOfFiles[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 179 | IFS=$DefaultIFS |
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| 180 | |
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| 181 | # |
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| 182 | $ECHO "DEBUG (${scriptName}): Download if necessary the headers" |
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| 183 | # |
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| 184 | for ifile in ${listOfFiles[@]} |
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| 185 | do |
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| 186 | #test if the headers have not yet been downloaded |
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| 187 | if [ ! -e ${dirFiberfile}/${ifile} ]; then |
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| 188 | OUT2=./getheaders.$$ |
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| 189 | iget -f -K ${dirIrods}/${ifile} ${dirFiberfile} >${OUT2} 2>&1 |
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| 190 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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| 191 | if [ "<$igetStatus>" != "<>" ]; then |
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| 192 | $ECHO "FATAL (${scriptName}): error while iget:" |
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| 193 | $ECHO $igetStatus |
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| 194 | #JEC 29/9/11 avoid finished stuff |
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| 195 | # touch ${tmppublicpath}/proc_script.finished |
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| 196 | exit 1 |
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| 197 | fi |
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| 198 | $RM -f $OUT2 |
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| 199 | fi |
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| 200 | done |
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| 201 | # |
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| 202 | $ECHO "DEBUG (${scriptName}): START call select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc}" |
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| 203 | # |
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| 204 | #Get list of file to process |
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| 205 | headerFileSelected=./selectSignal.$$ |
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| 206 | #JEC 29/9/11 avoid finished stuff |
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| 207 | #$RM -f ${tmppublicpath}/select.finished |
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| 208 | ${scriptpath}/select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc} | $GREP "^#[0-9]" | $SED "s/^#//" > $headerFileSelected |
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| 209 | #while [ ! -f "${tmppublicpath}/select.finished" ]; do |
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| 210 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/select.finished" |
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| 211 | # date +%T |
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| 212 | # sleep 30 |
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| 213 | #done |
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| 214 | #$RM ${tmppublicpath}/select.finished |
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| 215 | # |
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| 216 | $ECHO "DEBUG (${scriptName}): END" |
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| 217 | # |
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| 218 | $ECHO "DEBUG (${scriptName}): START filling cycleArray, filesArray" |
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| 219 | # |
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| 220 | declare -a cycleArray |
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| 221 | declare -a filesArray |
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| 222 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>" |
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| 223 | IFS=$DefaultIFS |
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| 224 | $ECHO "DEBUG (${scriptName}): START cat $headerFileSelected" |
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| 225 | $CAT $headerFileSelected |
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| 226 | $ECHO "DEBUG (${scriptName}): END cat $headerFileSelected" |
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| 227 | |
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| 228 | while read v1 v2 |
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| 229 | do |
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| 230 | cycleArray[${#cycleArray[*]}]=$v1 |
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| 231 | filesArray[${#filesArray[*]}]=$v2 |
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| 232 | done < $headerFileSelected |
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| 233 | |
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| 234 | if [ ${#cycleArray[*]} -eq 0 -o ${#filesArray[*]} -eq 0 ]; then |
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| 235 | $ECHO "FATAL (${scriptName}): no header file selected (${#cycleArray[*]}, ${#filesArray[*]})" |
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| 236 | #JEC 29/9/11 avoid finished stuff |
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| 237 | # touch ${tmppublicpath}/proc_script.finished |
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| 238 | exit 1 |
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| 239 | else |
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| 240 | $ECHO "DEBUG (${scriptName}): non zero elements found for cycleArray and filesArray" |
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| 241 | fi |
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| 242 | |
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| 243 | # |
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| 244 | $ECHO "DEBUG (${scriptName}): number of elements <${#cycleArray[*]}> <${#filesArray[*]}>" |
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| 245 | $ECHO "DEBUG (${scriptName}): END" |
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| 246 | # |
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| 247 | # (timeShift) |
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| 248 | #Add 3sec to start ON / OFF |
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| 249 | #Substract 4sec to start DAB ON / OFF |
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| 250 | # |
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| 251 | #Take care: Cycle numbering starts at 1 in SCAFiles while Arrays index start at 0 |
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| 252 | # |
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| 253 | #for GAIN the reference cycle takes the middle of the run |
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| 254 | # |
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| 255 | #nwinmean donne le nombre de fenetre tspwin utilise pour faire calculer la moyenne des medianes de chaque fenetre |
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| 256 | #This is the nimber of paquets of the time window which change according to processing type |
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| 257 | $ECHO "DEBUG (${scriptName}): START switch on $typeofproc" |
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| 258 | # |
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| 259 | case "$typeofproc" in |
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| 260 | GAIN) |
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| 261 | $ECHO "process signal files for GAIN phase" |
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| 262 | ingain="" |
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| 263 | freqfilter="-freqfilter -" |
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| 264 | nwinmean="1" |
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| 265 | tspwin="5120" |
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| 266 | dirName="Off" |
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| 267 | cyclebasename="gaincycle" |
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| 268 | indexStartHour="6" |
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| 269 | timeShift="-4" |
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| 270 | timeDuration="14" |
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| 271 | firstCycleId=`expr ${#cycleArray[*]} / 2` |
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| 272 | firstCycleId=`expr ${firstCycleId} - 1` |
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| 273 | lastp1CycleId=`expr ${firstCycleId} + 1` |
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| 274 | ;; |
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| 275 | ON) |
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| 276 | $ECHO "process signal files for ON phases" |
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| 277 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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| 278 | freqfilter="-freqfilter 16" |
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| 279 | nwinmean="5" |
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| 280 | tspwin="5120" |
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| 281 | dirName="On" |
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| 282 | cyclebasename="datacycle" |
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| 283 | indexStartHour="4" |
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| 284 | timeShift="3" |
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| 285 | timeDuration="30" |
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| 286 | firstCycleId="0" |
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| 287 | lastp1CycleId="${#cycleArray[@]}" |
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| 288 | ;; |
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| 289 | OFF) |
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| 290 | $ECHO "process signal files for OFF phases" |
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| 291 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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| 292 | freqfilter="-freqfilter 16" |
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| 293 | nwinmean="5" |
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| 294 | tspwin="5120" |
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| 295 | dirName="Off" |
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| 296 | cyclebasename="datacycle" |
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| 297 | indexStartHour="8" |
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| 298 | timeShift="3" |
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| 299 | timeDuration="30" |
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| 300 | firstCycleId="0" |
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| 301 | lastp1CycleId="${#cycleArray[@]}" |
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| 302 | ;; |
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| 303 | CALIBON) |
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| 304 | $ECHO "process signal files for CALIBRATION ON phases" |
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| 305 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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| 306 | freqfilter="-freqfilter 16" |
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| 307 | nwinmean="1" |
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| 308 | tspwin="1024" |
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| 309 | dirName="On" |
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| 310 | cyclebasename="calibcycle" |
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| 311 | indexStartHour="2" |
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| 312 | timeShift="-4" |
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| 313 | timeDuration="14" |
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| 314 | firstCycleId="0" |
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| 315 | lastp1CycleId="${#cycleArray[@]}" |
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| 316 | ;; |
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| 317 | CALIBOFF) |
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| 318 | $ECHO "process signal files for CALIBRATION OFF phases" |
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| 319 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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| 320 | freqfilter="-freqfilter 16" |
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| 321 | nwinmean="1" |
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| 322 | tspwin="1024" |
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| 323 | dirName="Off" |
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| 324 | cyclebasename="calibcycle" |
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| 325 | indexStartHour="6" |
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| 326 | timeShift="-4" |
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| 327 | timeDuration="14" |
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| 328 | firstCycleId="0" |
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| 329 | lastp1CycleId="${#cycleArray[@]}" |
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| 330 | ;; |
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| 331 | *) |
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| 332 | $ECHO "FATAL (${scriptName}): type of processing" |
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| 333 | usage |
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| 334 | #JEC 29/9/11 avoid finished stuff |
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| 335 | # touch ${tmppublicpath}/proc_script.finished |
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| 336 | exit 1 |
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| 337 | ;; |
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| 338 | esac |
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| 339 | # |
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| 340 | $ECHO "DEBUG (${scriptName}): END" |
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| 341 | # |
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| 342 | # |
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| 343 | #Compute time windows (Warning usage of GMT date) |
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| 344 | # |
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| 345 | $ECHO "DEBUG (${scriptName}): START compute time windows" |
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| 346 | OUT=./baotiming.$$ |
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| 347 | ${AWK} -v datesys=${DATE} -v type=${indexStartHour} -v shift=${timeShift} ' |
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| 348 | BEGIN {FS=","} |
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| 349 | { |
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| 350 | phaseStart=$type |
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| 351 | cmd=sprintf("%s +%%s -d \"%s\" ",datesys,phaseStart); |
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| 352 | (cmd | getline phstart); |
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| 353 | close(cmd); |
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| 354 | newstart = phstart+shift; |
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| 355 | cmd=sprintf("%s +%%T -d \"1970-01-01 %s sec GMT\"",datesys,newstart); |
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| 356 | (cmd | getline newStart); |
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| 357 | close(cmd); |
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| 358 | print $1,newStart,phaseStart; |
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| 359 | } |
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| 360 | ' ${scaFileSummarized} > ${OUT} |
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| 361 | # |
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| 362 | $ECHO "DEBUG (${scriptName}): END" |
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| 363 | # |
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| 364 | $ECHO "DEBUG (${scriptName}): START cat ${OUT}" |
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| 365 | $CAT ${OUT} |
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| 366 | $ECHO "DEBUG (${scriptName}): END cat ${OUT}" |
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| 367 | # |
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| 368 | $ECHO "DEBUG (${scriptName}): START filling cylceArrayBis timeArray" |
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| 369 | # |
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| 370 | declare -a cycleArrayBis |
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| 371 | declare -a timeArray |
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| 372 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>" |
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| 373 | IFS=$DefaultIFS |
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| 374 | #select the selected cycles |
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| 375 | idtofind="0" |
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| 376 | while read v1 v2 v3 |
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| 377 | do |
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| 378 | if [ ${idtofind} -lt ${#cycleArray[*]} ]; then |
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| 379 | if [ ${v1} = ${cycleArray[${idtofind}]} ]; then |
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| 380 | cycleArrayBis[${#cycleArrayBis[*]}]=$v1 |
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| 381 | timeArray[${#timeArray[*]}]=$v2 |
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| 382 | idtofind=`expr ${idtofind} + 1` |
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| 383 | fi |
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| 384 | fi |
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| 385 | done < ${OUT} |
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| 386 | $ECHO "DEBUG (${scriptName}): number of elements ${#cycleArrayBis[*]} ${#timeArray[*]}" |
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| 387 | $ECHO "DEBUG (${scriptName}): END" |
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| 388 | |
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| 389 | |
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| 390 | ######################### |
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| 391 | # specmfib exe |
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| 392 | ######################### |
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| 393 | prg="/afs/in2p3.fr/throng/baoradio/Library/Progs/TAcq/Objs/specmfib" |
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| 394 | if [ ! -e $prg ]; then |
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| 395 | $ECHO "FATAL (${scriptName}): $prg not found" |
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| 396 | #JEC 29/9/11 avoid finished stuff |
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| 397 | # touch ${tmppublicpath}/proc_script.finished |
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| 398 | exit 1 |
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| 399 | fi |
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| 400 | |
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| 401 | |
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| 402 | dirFiberfile=${iojobpath}/${localpath} |
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| 403 | |
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| 404 | curDir=`pwd` |
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| 405 | # |
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| 406 | $ECHO "DEBUG (${scriptName}): in principle $dirFiberfile == $curDir " |
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| 407 | # |
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| 408 | #force single channel |
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| 409 | forceSingle="-singlechan" |
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| 410 | #debug |
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| 411 | prtlevel="1" |
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| 412 | |
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| 413 | |
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| 414 | #Loop on cycles |
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| 415 | ## |
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| 416 | $ECHO "DEBUG (${scriptName}): START loop on cycles Ids ${firstCycleId} to ${lastp1CycleId}" |
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| 417 | |
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| 418 | #write the script to be send to Batch |
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| 419 | #get gain file if necessary |
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| 420 | if [ ${typeofproc} != "GAIN" ]; then |
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| 421 | OUT2=./igetStatus.$$ |
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| 422 | iget /baoradio/data/AmasNancay/${localpath}/gain_${dateSelected}_${srclower}.fits >${OUT2} 2>&1 |
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| 423 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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| 424 | if [ "<${igetStatus}>" != "<>" ]; then |
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| 425 | $ECHO "FATAL (${scriptName}): error while iget:" |
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| 426 | $ECHO $igetStatus |
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| 427 | #JEC 29/9/11 avoid finished stuff |
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| 428 | # touch ${tmppublicpath}/${jobBatchName}.finished |
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| 429 | exit 1 |
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| 430 | fi |
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| 431 | $RM ${OUT2} |
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| 432 | fi |
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| 433 | |
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| 434 | |
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| 435 | for ((i=${firstCycleId};i<${lastp1CycleId};i++)); do |
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| 436 | # |
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| 437 | |
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| 438 | #### |
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| 439 | # Check daq status |
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| 440 | #JEC 1/10/11 Use generic baodaqstatus name |
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| 441 | #### |
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| 442 | #get the daq current irod status |
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| 443 | #tag=`${DATE} +%F` |
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| 444 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt |
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| 445 | OUT1=${publicpath}/baodaqstatus-current.txt |
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| 446 | |
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| 447 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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| 448 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem" |
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| 449 | exit 1 |
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| 450 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2min..." |
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| 451 | #JEC 29/9/11 avoid finished stuff |
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| 452 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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| 453 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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| 454 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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| 455 | # sleep 30 |
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| 456 | # done |
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| 457 | # $RM ${tmppublicpath}/statusdaq.finished |
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| 458 | #protect against remove/rewriting |
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| 459 | # $CHMOD -v 444 ${OUT1} |
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| 460 | fi |
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| 461 | |
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| 462 | #time window selection |
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| 463 | tmproc="-tmproc ${timeArray[${i}]},${timeDuration}" |
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| 464 | #cycle <number> |
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| 465 | cycle="${cycleArray[${i}]}" |
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| 466 | if [ "<${firstCycle}>" != "<>" -a "<${lastCycle}>" != "<>" ]; then |
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| 467 | if [ ${cycle} -lt ${firstCycle} -o ${cycle} -gt ${lastCycle} ]; then |
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| 468 | continue |
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| 469 | fi |
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| 470 | fi |
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| 471 | $ECHO "DEBUG (${scriptName}): process cycle $cycle" |
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| 472 | |
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| 473 | #cycle <name><number> |
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| 474 | cycle="${cyclebasename}${cycleArray[${i}]}" |
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| 475 | #signal files selection |
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| 476 | infiles="${filesArray[${i}]}" |
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| 477 | # |
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| 478 | #Prepare BQS parameters: MEMORY, CPU...# |
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| 479 | infilesArray=( `$ECHO $infiles | $AWK 'BEGIN {FS=","} {for(i=1;i<NF;i++)print $i;}'` ) |
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| 480 | IFS=' |
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| 481 | ' |
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| 482 | infilesArray=( $( printf "%s\n" "${infilesArray[@]}" | awk 'x[$0]++ == 0' ) ) |
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| 483 | IFS=$DefaultIFS |
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| 484 | firstFile=${infilesArray[0]} |
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| 485 | lastFile=${infilesArray[1]} |
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| 486 | # |
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| 487 | # |
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| 488 | # |
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| 489 | #get signals files |
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| 490 | OUT3=./getsignals.$$ |
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| 491 | #JEC 29/9/11 avoid finished stuff |
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| 492 | # $RM -f ${tmppublicpath}/getsignalfiles.finished |
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| 493 | ${scriptpath}/getsignalfiles.sh ${sourceRadio} ${dateSelected} ${firstFile} ${lastFile} > ${OUT3} 2>&1 |
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| 494 | # while [ ! -f "${tmppublicpath}/getsignalfiles.finished" ]; do |
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| 495 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getsignalfiles.finished" |
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| 496 | # date +%T |
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| 497 | # sleep 30 |
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| 498 | # done |
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| 499 | # $RM ${tmppublicpath}/getsignalfiles.finished |
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| 500 | |
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| 501 | getSignals=`$GREP "^FATAL" ${OUT3}` |
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| 502 | if [ "<$getSignals>" != "<>" ]; then |
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| 503 | $ECHO "FATAL (${scriptName}): error while get signals" |
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| 504 | $ECHO $getSignals |
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| 505 | #JEC 29/9/11 avoid finished stuff |
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| 506 | # touch ${tmppublicpath}/${jobBatchName}.finished |
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| 507 | exit 1 |
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| 508 | fi |
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| 509 | $RM ${OUT3} |
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| 510 | |
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| 511 | #location of the signal file |
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| 512 | fibfile="${curDir} 1,2" |
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| 513 | # |
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| 514 | outDir=${curDir}/${dirName}/${cycle} |
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| 515 | $MKDIR -p ${outDir} |
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| 516 | |
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| 517 | # |
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| 518 | # where ami... |
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| 519 | # |
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| 520 | $ECHO "We are here `pwd`" |
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| 521 | $LS -lrth |
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| 522 | $FIND . -name "igetStatus.*" | $XARGS -i $CAT {} |
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| 523 | $LS ./Fiber1 | $WC -l |
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| 524 | $LS ./Fiber2 | $WC -l |
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| 525 | $LS -lR ${outDir} |
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| 526 | |
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| 527 | #Note: here act=gain means only that specmfib will use median-like algorithms (not only for gains...) |
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| 528 | $prg -act gain $forceSingle $freqfilter -prt $prtlevel -out ${outDir} -nmean $nwinmean $ingain $tmproc -tspwin ${tspwin},0,0 -in $infiles ${fibfile} |
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| 529 | |
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| 530 | $ECHO ${outDir} |
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| 531 | $LS -lrt ${outDir} |
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| 532 | |
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| 533 | #save results to Irods (use option -f ONLY to force override) |
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| 534 | iput -v -K -r ${curDir}/${dirName} /baoradio/data/AmasNancay/${localpath} |
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| 535 | # |
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| 536 | #clean the signal files which can at the end of the day fill completly the scratch directory of the batch work/AmasNancayer |
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| 537 | $RM -rf ${iojobpath}/${localpath}/Fiber1 |
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| 538 | $RM -rf ${iojobpath}/${localpath}/Fiber2 |
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| 539 | $RM -rf ${iojobpath}/${localpath}/${typeofproc} |
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| 540 | |
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| 541 | # |
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| 542 | # |
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| 543 | |
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| 544 | #end loop on cycles |
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| 545 | done |
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| 546 | # |
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| 547 | $ECHO "DEBUG (${scriptName}): END loop on cycles" |
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| 548 | # |
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| 549 | #JEC 29/9/11 avoid finished stuff |
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| 550 | #touch ${tmppublicpath}/proc_script.finished |
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| 551 | exit 0 |
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