1 | #!/bin/sh -xvf |
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2 | #Basic tuning of system fuction used. |
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3 | AWK=/bin/awk |
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4 | SED=/bin/sed |
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5 | GREP=/bin/grep |
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6 | WC=/usr/bin/wc |
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7 | RM=/bin/rm |
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8 | CAT=/bin/cat |
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9 | TOUCH=/bin/touch |
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10 | DATE=/bin/date |
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11 | ECHO=/bin/echo |
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12 | LS=/bin/ls |
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13 | MKDIR=/bin/mkdir |
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14 | TR=/usr/bin/tr |
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15 | FIND=/usr/bin/find |
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16 | PRINTF=/usr/bin/printf |
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17 | XARGS=/usr/bin/xargs |
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18 | SORT=/bin/sort |
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19 | QSUB=qsub |
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20 | |
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21 | DefaultIFS=$' \t\n' |
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22 | IFS=$DefaultIFS |
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23 | |
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24 | |
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25 | scriptName="`basename $0`" |
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26 | $ECHO "Processing script ${scriptName} at `date`" |
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27 | ###### |
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28 | # Local functions |
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29 | ###### |
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30 | usage() { |
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31 | echo "usage: $scriptName <source> <YYYYMMDD-directory> <type of process>" |
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32 | echo " -<source> as Abell85" |
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33 | echo " -<YYYYMMDD-directory> as 20110428" |
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34 | echo " -<type of process> as GAIN|CALIBON|CALIBOFF|ON|OFF" |
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35 | } |
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36 | ###### |
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37 | # argument test |
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38 | ###### |
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39 | |
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40 | #Process cmd line args: the -src option is mandatory (source name as Abell85) |
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41 | #action: gain|mspec (gain: gain-like doucble median filtering |
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42 | # mspec: mean+sigma wo filetring) |
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43 | action="gain" |
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44 | sourceRadio= |
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45 | dateSelected= |
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46 | typeofproc= |
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47 | #use -sim option to simulate processing (debug the script as if...) |
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48 | simulationMode=Off |
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49 | # |
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50 | #first and last cycle to process |
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51 | # |
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52 | firstCycle= |
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53 | lastCycle= |
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54 | while [ $# -gt 0 ] |
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55 | do |
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56 | case "$1" in |
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57 | -act) action=$2; shift;; |
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58 | -src) sourceRadio=$2; shift;; |
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59 | -date) dateSelected=$2; shift;; |
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60 | -type) typeofproc=$2; shift;; |
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61 | -fcycle) firstCycle=$2; shift;; |
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62 | -lcycle) lastCycle=$2; shift;; |
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63 | -sim) simulationMode=On;; |
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64 | -h) |
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65 | echo >&2 \ |
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66 | "usage: $0 [-act <action> ] -src souce -date YYYYMMDD -type type [-fcycle firstCycle] [-lcycle lastCycle] [-sim to trig simulation mode]" |
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67 | exit 1;; |
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68 | *) break;; # terminate while loop |
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69 | esac |
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70 | shift |
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71 | done |
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72 | |
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73 | #Check input |
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74 | |
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75 | if [ "<${sourceRadio}>" = "<>" ]; then |
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76 | $ECHO "FATAL: You have forgotten to select the source option (-src)" |
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77 | exit 1 |
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78 | fi |
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79 | |
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80 | if [ "<${dateSelected}>" = "<>" ]; then |
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81 | $ECHO "FATAL: You have forgotten to select the date option (-date)" |
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82 | exit 1 |
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83 | fi |
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84 | |
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85 | if [ "<${typeofproc}>" = "<>" ]; then |
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86 | $ECHO "FATAL: You have forgotten to select the type option (-type)" |
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87 | exit 1 |
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88 | |
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89 | fi |
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90 | #else |
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91 | # offtype=`$ECHO ${typeofproc} | $GREP -i OFF | $WC -l` |
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92 | # ontype=`$ECHO ${typeofproc} | $GREP -i ON | $WC -l` |
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93 | # if [ "<${offtype}>" = "<1>" -a "<${ontype}>" = "<0>" ]; then |
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94 | # datatype="OFF" |
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95 | # elif [ "<${offtype}>" = "<0>" -a "<${ontype}>" = "<1>" ]; then |
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96 | # datatype="ON" |
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97 | # else |
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98 | # $ECHO "FATAL: not supported: -type ${typeofproc}" |
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99 | # exit 1 |
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100 | # fi |
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101 | #fi |
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102 | |
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103 | |
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104 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" ` |
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105 | |
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106 | |
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107 | #Path to public backupable path |
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108 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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109 | |
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110 | #temporary files to synchronize scripts |
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111 | tmppublicpath=${TMPPUBLICPATH} |
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112 | $LS -l ${tmppublicpath} > /dev/null |
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113 | |
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114 | |
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115 | #Path where the job will do temporary IO |
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116 | . ${SCRIPTPATH}/set_iojobpath.sh |
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117 | iojobpath=$(set_iojobpath) |
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118 | cd ${iojobpath} |
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119 | |
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120 | localpath="${sourceRadio}/${dateSelected}${srclower}" |
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121 | $MKDIR -p ./${localpath} |
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122 | cd ./${localpath} |
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123 | mainDirectory=`pwd` |
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124 | |
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125 | |
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126 | #Path of the utility scripts |
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127 | scriptpath=${SCRIPTPATH} |
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128 | |
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129 | |
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130 | #select file per cycle |
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131 | #$ECHO "Select files process..." |
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132 | #keep only lines with structure: cycle_number first,last,step |
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133 | #Get sca files |
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134 | $ECHO "DEBUG (${scriptName}): START call getscafiles.sh ${sourceRadio} ${dateSelected}" |
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135 | OUT1=./getScaStatus.$$ |
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136 | #JEC 29/9/11 avoid finished stuff |
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137 | #$RM -f ${tmppublicpath}/getscafiles.finished |
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138 | ${scriptpath}/getscafiles.sh ${sourceRadio} ${dateSelected} > ${OUT1} 2>&1 |
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139 | #while [ ! -f "${tmppublicpath}/getscafiles.finished" ]; do |
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140 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getscafiles.finished" |
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141 | # date +%T |
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142 | # sleep 30 |
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143 | #done |
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144 | #$RM -f ${tmppublicpath}/getscafiles.finished |
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145 | $ECHO "DEBUG (${scriptName}): END" |
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146 | |
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147 | |
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148 | getScaStatus=`$GREP "^\(FATAL\|ERROR\)" ${OUT1}` |
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149 | |
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150 | if [ "<${getScaStatus}>" != "<>" ]; then |
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151 | $ECHO "FATAL (${scriptName}): error to get sca file for $sourceRadio $dateSelected" |
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152 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}" |
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153 | $CAT ${OUT1} |
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154 | $ECHO "DEBUG (${scriptName}): END" |
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155 | exit 1 |
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156 | fi |
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157 | |
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158 | |
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159 | scaFileSummarized=`$FIND . -name "sca*.sum" -print` |
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160 | if [ "<${scaFileSummarized}>" = "<>" ]; then |
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161 | $ECHO "FATAL (${scriptName}): strange sca file summarized not available: $sourceRadio $dateSelected" |
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162 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}" |
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163 | $CAT ${OUT1} |
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164 | $ECHO "DEBUG (${scriptName}): END" |
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165 | exit 1 |
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166 | fi |
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167 | $RM ${OUT1} |
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168 | |
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169 | scaFileSummarized=`basename $scaFileSummarized` |
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170 | |
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171 | #set Irods environment |
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172 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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173 | #download header files to be used for signal files selction |
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174 | $MKDIR -p ./Fiber1 |
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175 | dirFiberfile=`pwd`/Fiber1 |
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176 | |
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177 | dirIrods="/baoradio/data/AmasNancay/${sourceRadio}/${dateSelected}${srclower}/Fiber1" |
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178 | |
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179 | listOfFiles=( `ils ${dirIrods} | $GREP -i "header" | $XARGS -i basename {} | $SORT -k1.7n` ) |
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180 | IFS=' |
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181 | ' |
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182 | listOfFiles=( $( $PRINTF "%s\n" "${listOfFiles[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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183 | IFS=$DefaultIFS |
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184 | |
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185 | # |
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186 | $ECHO "DEBUG (${scriptName}): Download if necessary the headers" |
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187 | # |
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188 | for ifile in ${listOfFiles[@]} |
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189 | do |
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190 | #test if the headers have not yet been downloaded |
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191 | if [ ! -e ${dirFiberfile}/${ifile} ]; then |
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192 | OUT2=./getheaders.$$ |
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193 | iget -f -K ${dirIrods}/${ifile} ${dirFiberfile} >${OUT2} 2>&1 |
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194 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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195 | if [ "<$igetStatus>" != "<>" ]; then |
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196 | $ECHO "FATAL (${scriptName}): error while iget:" |
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197 | $ECHO $igetStatus |
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198 | exit 1 |
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199 | fi |
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200 | $RM -f $OUT2 |
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201 | fi |
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202 | done |
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203 | # |
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204 | $ECHO "DEBUG (${scriptName}): START call select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc}" |
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205 | # |
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206 | #Get list of file to process |
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207 | headerFileSelected=./selectSignal.$$ |
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208 | #JEC 29/9/11 avoid finished stuff |
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209 | #$RM -f ${tmppublicpath}/select.finished |
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210 | ${scriptpath}/select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc} | $GREP "^#[0-9]" | $SED "s/^#//" > $headerFileSelected |
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211 | #while [ ! -f "${tmppublicpath}/select.finished" ]; do |
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212 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/select.finished" |
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213 | # date +%T |
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214 | # sleep 30 |
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215 | #done |
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216 | #$RM ${tmppublicpath}/select.finished |
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217 | # |
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218 | $ECHO "DEBUG (${scriptName}): END" |
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219 | # |
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220 | $ECHO "DEBUG (${scriptName}): START filling cycleArray, filesArray" |
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221 | # |
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222 | declare -a cycleArray |
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223 | declare -a filesArray |
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224 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>" |
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225 | IFS=$DefaultIFS |
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226 | $ECHO "DEBUG (${scriptName}): START cat $headerFileSelected" |
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227 | $CAT $headerFileSelected |
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228 | $ECHO "DEBUG (${scriptName}): END cat $headerFileSelected" |
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229 | |
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230 | while read v1 v2 |
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231 | do |
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232 | cycleArray[${#cycleArray[*]}]=$v1 |
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233 | filesArray[${#filesArray[*]}]=$v2 |
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234 | done < $headerFileSelected |
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235 | |
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236 | if [ ${#cycleArray[*]} -eq 0 -o ${#filesArray[*]} -eq 0 ]; then |
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237 | $ECHO "FATAL (${scriptName}): no header file selected (${#cycleArray[*]}, ${#filesArray[*]})" |
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238 | exit 1 |
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239 | else |
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240 | $ECHO "DEBUG (${scriptName}): non zero elements found for cycleArray and filesArray" |
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241 | fi |
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242 | |
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243 | # |
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244 | $ECHO "DEBUG (${scriptName}): number of elements <${#cycleArray[*]}> <${#filesArray[*]}>" |
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245 | $ECHO "DEBUG (${scriptName}): END" |
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246 | # |
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247 | # (timeShift) |
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248 | #Add 3sec to start ON / OFF |
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249 | #Substract 4sec to start DAB ON / OFF |
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250 | # |
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251 | #Take care: Cycle numbering starts at 1 in SCAFiles while Arrays index start at 0 |
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252 | # |
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253 | #for GAIN the reference cycle takes the middle of the run |
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254 | # |
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255 | #nwinmean donne le nombre de fenetre tspwin utilise pour faire calculer la moyenne des medianes de chaque fenetre |
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256 | #This is the nimber of paquets of the time window which change according to processing type |
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257 | $ECHO "DEBUG (${scriptName}): START switch on $typeofproc" |
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258 | # |
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259 | case "$typeofproc" in |
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260 | GAIN) |
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261 | $ECHO "process signal files for GAIN phase" |
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262 | ingain="" |
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263 | freqfilter="-freqfilter -" |
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264 | nwinmean="1" |
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265 | tspwin="5120" |
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266 | dirName="Off" |
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267 | cyclebasename="gaincycle" |
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268 | indexStartHour="6" |
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269 | timeShift="-4" |
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270 | timeDuration="14" |
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271 | firstCycleId=`expr ${#cycleArray[*]} / 2` |
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272 | firstCycleId=`expr ${firstCycleId} - 1` |
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273 | lastp1CycleId=`expr ${firstCycleId} + 1` |
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274 | ;; |
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275 | GAINNF) |
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276 | $ECHO "process signal files for GAIN phase wo Freq FILTERING" |
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277 | ingain="" |
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278 | freqfilter="-freqfilter 4" |
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279 | nwinmean="1" |
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280 | tspwin="5120" |
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281 | dirName="Off" |
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282 | cyclebasename="gainf4cycle" |
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283 | indexStartHour="6" |
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284 | timeShift="-4" |
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285 | timeDuration="14" |
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286 | firstCycleId=`expr ${#cycleArray[*]} / 2` |
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287 | firstCycleId=`expr ${firstCycleId} - 1` |
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288 | lastp1CycleId=`expr ${firstCycleId} + 1` |
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289 | ;; |
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290 | ON) |
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291 | $ECHO "process signal files for ON phases" |
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292 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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293 | freqfilter="" |
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294 | nwinmean="5" |
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295 | tspwin="5120" |
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296 | dirName="On" |
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297 | cyclebasename="datacycle" |
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298 | indexStartHour="4" |
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299 | timeShift="3" |
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300 | timeDuration="30" |
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301 | firstCycleId="0" |
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302 | lastp1CycleId="${#cycleArray[@]}" |
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303 | ;; |
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304 | OFF) |
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305 | $ECHO "process signal files for OFF phases" |
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306 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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307 | freqfilter="" |
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308 | nwinmean="5" |
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309 | tspwin="5120" |
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310 | dirName="Off" |
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311 | cyclebasename="datacycle" |
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312 | indexStartHour="8" |
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313 | timeShift="3" |
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314 | timeDuration="30" |
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315 | firstCycleId="0" |
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316 | lastp1CycleId="${#cycleArray[@]}" |
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317 | ;; |
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318 | MEANOFF) |
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319 | $ECHO "process signal files for OFF phases (MEAN)" |
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320 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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321 | freqfilter="" |
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322 | nwinmean="25000" |
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323 | tspwin="0" |
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324 | dirName="Off" |
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325 | cyclebasename="meancycle" |
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326 | indexStartHour="8" |
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327 | timeShift="3" |
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328 | timeDuration="30" |
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329 | firstCycleId="0" |
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330 | lastp1CycleId="${#cycleArray[@]}" |
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331 | ;; |
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332 | MEANON) |
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333 | $ECHO "process signal files for ON phases (MEAN)" |
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334 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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335 | freqfilter="" |
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336 | nwinmean="25000" |
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337 | tspwin="0" |
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338 | dirName="On" |
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339 | cyclebasename="meancycle" |
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340 | indexStartHour="4" |
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341 | timeShift="3" |
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342 | timeDuration="30" |
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343 | firstCycleId="0" |
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344 | lastp1CycleId="${#cycleArray[@]}" |
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345 | ;; |
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346 | CALIBON) |
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347 | $ECHO "process signal files for CALIBRATION ON phases" |
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348 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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349 | freqfilter="-freqfilter -" |
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350 | nwinmean="1" |
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351 | tspwin="1024" |
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352 | dirName="On" |
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353 | cyclebasename="calibcycle" |
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354 | indexStartHour="2" |
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355 | timeShift="-4" |
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356 | timeDuration="14" |
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357 | firstCycleId="0" |
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358 | lastp1CycleId="${#cycleArray[@]}" |
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359 | ;; |
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360 | CALIBOFF) |
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361 | $ECHO "process signal files for CALIBRATION OFF phases" |
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362 | ingain="-gain gain_${dateSelected}_${srclower}.fits" |
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363 | freqfilter="-freqfilter -" |
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364 | nwinmean="1" |
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365 | tspwin="1024" |
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366 | dirName="Off" |
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367 | cyclebasename="calibcycle" |
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368 | indexStartHour="6" |
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369 | timeShift="-4" |
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370 | timeDuration="14" |
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371 | firstCycleId="0" |
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372 | lastp1CycleId="${#cycleArray[@]}" |
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373 | ;; |
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374 | *) |
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375 | $ECHO "FATAL (${scriptName}): type of processing" |
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376 | usage |
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377 | exit 1 |
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378 | ;; |
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379 | esac |
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380 | # |
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381 | $ECHO "DEBUG (${scriptName}): END" |
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382 | # |
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383 | # |
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384 | #Compute time windows (Warning usage of GMT date) |
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385 | # |
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386 | $ECHO "DEBUG (${scriptName}): START compute time windows" |
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387 | OUT=./baotiming.$$ |
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388 | ${AWK} -v datesys=${DATE} -v type=${indexStartHour} -v shift=${timeShift} ' |
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389 | BEGIN {FS=","} |
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390 | { |
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391 | phaseStart=$type |
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392 | cmd=sprintf("%s +%%s -d \"%s\" ",datesys,phaseStart); |
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393 | (cmd | getline phstart); |
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394 | close(cmd); |
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395 | newstart = phstart+shift; |
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396 | cmd=sprintf("%s +%%T -d \"1970-01-01 %s sec GMT\"",datesys,newstart); |
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397 | (cmd | getline newStart); |
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398 | close(cmd); |
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399 | print $1,newStart,phaseStart; |
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400 | } |
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401 | ' ${scaFileSummarized} > ${OUT} |
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402 | # |
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403 | $ECHO "DEBUG (${scriptName}): END" |
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404 | # |
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405 | $ECHO "DEBUG (${scriptName}): START cat ${OUT}" |
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406 | $CAT ${OUT} |
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407 | $ECHO "DEBUG (${scriptName}): END cat ${OUT}" |
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408 | # |
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409 | $ECHO "DEBUG (${scriptName}): START filling cycleArrayBis timeArray" |
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410 | # |
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411 | declare -a cycleArrayBis |
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412 | declare -a timeArray |
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413 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>" |
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414 | IFS=$DefaultIFS |
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415 | #select the selected cycles |
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416 | idtofind="0" |
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417 | while read v1 v2 v3 |
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418 | do |
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419 | if [ ${idtofind} -lt ${#cycleArray[*]} ]; then |
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420 | if [ ${v1} = ${cycleArray[${idtofind}]} ]; then |
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421 | cycleArrayBis[${#cycleArrayBis[*]}]=$v1 |
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422 | timeArray[${#timeArray[*]}]=$v2 |
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423 | idtofind=`expr ${idtofind} + 1` |
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424 | fi |
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425 | fi |
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426 | done < ${OUT} |
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427 | $ECHO "DEBUG (${scriptName}): number of elements ${#cycleArrayBis[*]} ${#timeArray[*]}" |
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428 | $ECHO "DEBUG (${scriptName}): END" |
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429 | |
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430 | |
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431 | ######################### |
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432 | # specmfib exe |
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433 | ######################### |
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434 | prg="/afs/in2p3.fr/throng/baoradio/Library/Progs/TAcq/Objs/specmfib" |
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435 | if [ ! -e $prg ]; then |
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436 | $ECHO "FATAL (${scriptName}): $prg not found" |
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437 | exit 1 |
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438 | fi |
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439 | |
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440 | |
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441 | dirFiberfile=${iojobpath}/${localpath} |
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442 | |
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443 | curDir=`pwd` |
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444 | # |
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445 | $ECHO "DEBUG (${scriptName}): in principle $dirFiberfile == $curDir " |
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446 | # |
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447 | #force single channel |
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448 | forceSingle="-singlechan" |
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449 | #debug |
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450 | prtlevel="1" |
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451 | |
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452 | |
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453 | #Loop on cycles |
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454 | ## |
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455 | $ECHO "DEBUG (${scriptName}): START loop on cycles Ids ${firstCycleId} to ${lastp1CycleId}" |
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456 | |
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457 | #write the script to be send to Batch |
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458 | #get gain file if necessary |
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459 | if [ ${typeofproc} != "GAIN" ]; then |
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460 | OUT2=./igetStatus.$$ |
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461 | iget /baoradio/data/AmasNancay/${localpath}/gain_${dateSelected}_${srclower}.fits >${OUT2} 2>&1 |
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462 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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463 | if [ "<${igetStatus}>" != "<>" ]; then |
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464 | $ECHO "FATAL (${scriptName}): error while iget:" |
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465 | $ECHO $igetStatus |
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466 | exit 1 |
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467 | fi |
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468 | $RM ${OUT2} |
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469 | fi |
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470 | |
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471 | |
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472 | for ((i=${firstCycleId};i<${lastp1CycleId};i++)); do |
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473 | # |
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474 | |
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475 | #### |
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476 | # Check daq status |
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477 | #JEC 1/10/11 Use generic baodaqstatus name |
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478 | #### |
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479 | #get the daq current irod status |
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480 | #tag=`${DATE} +%F` |
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481 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt |
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482 | OUT1=${publicpath}/baodaqstatus-current.txt |
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483 | |
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484 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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485 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem" |
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486 | exit 1 |
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487 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2min..." |
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488 | #JEC 29/9/11 avoid finished stuff |
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489 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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490 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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491 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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492 | # sleep 30 |
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493 | # done |
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494 | # $RM ${tmppublicpath}/statusdaq.finished |
---|
495 | #protect against remove/rewriting |
---|
496 | # $CHMOD -v 444 ${OUT1} |
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497 | fi |
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498 | |
---|
499 | #time window selection |
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500 | tmproc="-tmproc ${timeArray[${i}]},${timeDuration}" |
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501 | #cycle <number> |
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502 | cycle="${cycleArray[${i}]}" |
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503 | if [ "<${firstCycle}>" != "<>" -a "<${lastCycle}>" != "<>" ]; then |
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504 | if [ ${cycle} -lt ${firstCycle} -o ${cycle} -gt ${lastCycle} ]; then |
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505 | continue |
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506 | fi |
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507 | fi |
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508 | $ECHO "DEBUG (${scriptName}): process cycle $cycle" |
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509 | |
---|
510 | #cycle <name><number> |
---|
511 | cycle="${cyclebasename}${cycleArray[${i}]}" |
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512 | #signal files selection |
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513 | infiles="${filesArray[${i}]}" |
---|
514 | # |
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515 | #Prepare BQS parameters: MEMORY, CPU...# |
---|
516 | infilesArray=( `$ECHO $infiles | $AWK 'BEGIN {FS=","} {for(i=1;i<NF;i++)print $i;}'` ) |
---|
517 | IFS=' |
---|
518 | ' |
---|
519 | infilesArray=( $( printf "%s\n" "${infilesArray[@]}" | awk 'x[$0]++ == 0' ) ) |
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520 | IFS=$DefaultIFS |
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521 | firstFile=${infilesArray[0]} |
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522 | lastFile=${infilesArray[1]} |
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523 | # |
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524 | # |
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525 | # |
---|
526 | #get signals files |
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527 | OUT3=./getsignals.$$ |
---|
528 | #JEC 29/9/11 avoid finished stuff |
---|
529 | # $RM -f ${tmppublicpath}/getsignalfiles.finished |
---|
530 | ${scriptpath}/getsignalfiles.sh ${sourceRadio} ${dateSelected} ${firstFile} ${lastFile} > ${OUT3} 2>&1 |
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531 | # while [ ! -f "${tmppublicpath}/getsignalfiles.finished" ]; do |
---|
532 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getsignalfiles.finished" |
---|
533 | # date +%T |
---|
534 | # sleep 30 |
---|
535 | # done |
---|
536 | # $RM ${tmppublicpath}/getsignalfiles.finished |
---|
537 | |
---|
538 | getSignals=`$GREP "^FATAL" ${OUT3}` |
---|
539 | if [ "<$getSignals>" != "<>" ]; then |
---|
540 | $ECHO "FATAL (${scriptName}): error while get signals" |
---|
541 | $ECHO $getSignals |
---|
542 | exit 1 |
---|
543 | fi |
---|
544 | $RM ${OUT3} |
---|
545 | |
---|
546 | #location of the signal file |
---|
547 | fibfile="${curDir} 1,2" |
---|
548 | # |
---|
549 | outDir=${curDir}/${dirName}/${cycle} |
---|
550 | $MKDIR -p ${outDir} |
---|
551 | |
---|
552 | # |
---|
553 | # where ami... |
---|
554 | # |
---|
555 | $ECHO "We are here `pwd`" |
---|
556 | $LS -lrth |
---|
557 | $FIND . -name "igetStatus.*" | $XARGS -i $CAT {} |
---|
558 | $LS ./Fiber1 | $WC -l |
---|
559 | $LS ./Fiber2 | $WC -l |
---|
560 | $LS -lR ${outDir} |
---|
561 | |
---|
562 | #Note: here act=gain means only that specmfib will use median-like algorithms (not only for gains...) |
---|
563 | $prg -act ${action} $forceSingle $freqfilter -prt $prtlevel -out ${outDir} -nmean $nwinmean $ingain $tmproc -tspwin ${tspwin},0,0 -in $infiles ${fibfile} |
---|
564 | |
---|
565 | $ECHO ${outDir} |
---|
566 | $LS -lrt ${outDir} |
---|
567 | |
---|
568 | #save results to Irods (use option -f ONLY to force override) |
---|
569 | emptydir=`$FIND ${outDir} -maxdepth 1 -type f | $WC -l` |
---|
570 | if [ "<${emptydir}>" != "<0>" ]; then |
---|
571 | iput -v -K -r -f ${curDir}/${dirName} /baoradio/data/AmasNancay/${localpath} |
---|
572 | else |
---|
573 | $ECHO "DEBUG (${scriptName}): directory ${outDir} is empty" |
---|
574 | fi |
---|
575 | # |
---|
576 | #clean the signal files which can at the end of the day fill completly the scratch directory of the batch work/AmasNancayer |
---|
577 | $RM -rf ${iojobpath}/${localpath}/Fiber1 |
---|
578 | $RM -rf ${iojobpath}/${localpath}/Fiber2 |
---|
579 | # $RM -rf ${iojobpath}/${localpath}/${typeofproc} JEC 25/10/11 |
---|
580 | $RM -rf ${curDir}/${dirName} |
---|
581 | # |
---|
582 | # |
---|
583 | |
---|
584 | #end loop on cycles |
---|
585 | done |
---|
586 | # |
---|
587 | $ECHO "DEBUG (${scriptName}): END loop on cycles" |
---|
588 | |
---|
589 | exit 0 |
---|