| 1 | #!/bin/sh |
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| 2 | #Perform the ON-OFF analysis |
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| 3 | DATE=/bin/date |
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| 4 | GREP=/bin/grep |
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| 5 | AWK=/bin/awk |
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| 6 | ECHO=/bin/echo |
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| 7 | WC=/usr/bin/wc |
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| 8 | CAT=/bin/cat |
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| 9 | PRINTF=/usr/bin/printf |
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| 10 | FIND=/usr/bin/find |
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| 11 | MKDIR=/bin/mkdir |
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| 12 | XARGS=/usr/bin/xargs |
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| 13 | SORT=/bin/sort |
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| 14 | RM=/bin/rm |
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| 15 | TR=/usr/bin/tr |
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| 16 | CP=/bin/cp |
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| 17 | LS=/bin/ls |
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| 18 | CHMOD=/bin/chmod |
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| 19 | |
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| 20 | DefaultIFS=$' \t\n' |
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| 21 | IFS=$DefaultIFS |
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| 22 | |
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| 23 | #set Irods environment |
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| 24 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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| 25 | |
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| 26 | scriptName="`basename $0`" |
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| 27 | $ECHO "Processing script ${scriptName} at `date`" |
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| 28 | #which source to analyse |
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| 29 | |
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| 30 | #Process cmd line args: the -src option is mandatory (source name as Abell85) |
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| 31 | sourceRadio= |
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| 32 | dateSelected= |
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| 33 | #use -sim option to simulate processing (debug the script as if...) |
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| 34 | simulationMode=Off |
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| 35 | while [ $# -gt 0 ] |
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| 36 | do |
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| 37 | case "$1" in |
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| 38 | -src) sourceRadio=$2; shift;; |
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| 39 | -date) dateSelected=$2; shift;; |
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| 40 | -sim) simulationMode=On;; |
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| 41 | -h) |
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| 42 | echo >&2 \ |
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| 43 | "usage: $0 -src souce -date YYYYMMDD [-freq freq in MHz (default ${freqBAOCalib})] [-sim to trig simulation mode]" |
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| 44 | exit 1;; |
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| 45 | *) break;; # terminate while loop |
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| 46 | esac |
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| 47 | shift |
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| 48 | done |
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| 49 | |
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| 50 | if [ ${simulationMode} = "On" ]; then |
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| 51 | $ECHO "INFO ${scriptName} running in SIMUL mode" |
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| 52 | fi |
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| 53 | |
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| 54 | if [ "<${sourceRadio}>" = "<>" ]; then |
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| 55 | $ECHO "FATAL: You have forgotten to select the source option (-src)" |
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| 56 | exit 1 |
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| 57 | fi |
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| 58 | |
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| 59 | case ${sourceRadio} in |
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| 60 | Abell85) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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| 61 | Abell2440) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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| 62 | Abell1205) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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| 63 | *) ECHO "FATAL (${scriptName}): process ${sourceRadio} not yet foreseen" |
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| 64 | exit 1;; |
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| 65 | esac |
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| 66 | |
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| 67 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" ` |
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| 68 | |
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| 69 | #Path to public backupable path |
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| 70 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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| 71 | |
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| 72 | |
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| 73 | #temporary files to synchronize scripts |
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| 74 | tmppublicpath=${TMPPUBLICPATH} |
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| 75 | #wakeup the NFS disk |
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| 76 | $LS -l ${tmppublicpath} > /dev/null |
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| 77 | #clean previous spurious files |
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| 78 | $RM -f ${tmppublicpath}/*.finished |
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| 79 | |
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| 80 | #Path where the job will do temporary IO |
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| 81 | . ${SCRIPTPATH}/isInteractive.sh |
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| 82 | isInteractive=$(isInteractive) |
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| 83 | if [ ${isInteractive} == "1" ]; then |
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| 84 | $ECHO "Usage in INTERACTIVE may be destructive... To be used with great care !!!!" |
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| 85 | exit 0; |
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| 86 | fi |
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| 87 | |
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| 88 | . ${SCRIPTPATH}/set_iojobpath.sh |
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| 89 | iojobpath=$(set_iojobpath) |
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| 90 | cd ${iojobpath} |
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| 91 | |
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| 92 | localpath="${sourceRadio}" |
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| 93 | $MKDIR -p ./${localpath} |
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| 94 | cd ./${localpath} |
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| 95 | |
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| 96 | #save the top directory |
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| 97 | topDir=`pwd` |
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| 98 | |
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| 99 | #Path of the utility scripts |
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| 100 | scriptpath=${SCRIPTPATH} |
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| 101 | |
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| 102 | #get the daq current irod status |
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| 103 | #tag=`${DATE} +%F` |
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| 104 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt |
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| 105 | ####JEC 1/10/11 tag=`${DATE} +%F` |
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| 106 | #Use generic baodaqstatus name |
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| 107 | OUT1=${publicpath}/baodaqstatus-current.txt |
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| 108 | |
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| 109 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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| 110 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem" |
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| 111 | exit 1 |
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| 112 | #JEC 29/9/11 avoid finished stuff |
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| 113 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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| 114 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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| 115 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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| 116 | # sleep 30 |
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| 117 | # done |
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| 118 | # $RM ${tmppublicpath}/statusdaq.finished |
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| 119 | #protect against remove/rewriting |
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| 120 | # $CHMOD -v 444 ${OUT1} |
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| 121 | fi |
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| 122 | |
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| 123 | |
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| 124 | |
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| 125 | |
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| 126 | #Nb: if we want to implement a loop on sources we have to take care of srclower... |
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| 127 | |
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| 128 | $ECHO "You have selected sourceRadio = ${sourceRadio} [date = ${dateSelected}]" |
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| 129 | tableau=( `$GREP -i "${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` ) |
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| 130 | IFS=' |
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| 131 | ' |
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| 132 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 133 | IFS=$DefaultIFS |
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| 134 | |
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| 135 | |
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| 136 | for i in ${tableau[@]} |
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| 137 | do |
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| 138 | # |
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| 139 | # start a "fresh" session |
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| 140 | cd ${topDir} |
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| 141 | $LS | $XARGS -i $RM -rf {} |
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| 142 | |
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| 143 | $ECHO "DEBUG: (${scriptName}) irods root dir $i" |
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| 144 | dateDAQ=`$ECHO ${i} | $AWK '{split($0,a,"/"); print a[6];}' | $AWK "{sub(/${srclower}/,\"\"); print}"` |
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| 145 | |
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| 146 | $ECHO "DEBUG: (${scriptName}): we are in directory `pwd` the topDir=${topDir}" |
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| 147 | $LS -lrt |
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| 148 | |
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| 149 | #JEC 1/10/11 Use generic baodaqstatus name |
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| 150 | #Look if the date has changed since beginning of the job! |
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| 151 | # curtag=`${DATE} +%F` |
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| 152 | # if [ "<${curtag}>" != "<${tag}>" ]; then |
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| 153 | # tag=${curtag} |
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| 154 | #it is necessary to update the daq status as the day has changed during the processing... (batch can take a long time...) |
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| 155 | # OUT1=${publicpath}/baodaqstatus-${curtag}.txt |
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| 156 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..." |
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| 157 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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| 158 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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| 159 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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| 160 | # sleep 30 |
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| 161 | # done |
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| 162 | # $RM ${tmppublicpath}/statusdaq.finished |
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| 163 | #protect against remove/rewriting |
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| 164 | # $CHMOD -v 444 ${OUT1} |
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| 165 | # fi |
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| 166 | # |
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| 167 | # look if the gain & calibration files exist |
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| 168 | # |
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| 169 | gainDone=`ils ${i} 2>&1 | $GREP -i "gain_.*\.fits" | $WC -l` |
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| 170 | if [ ! ${gainDone} -gt 0 ]; then |
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| 171 | $ECHO "FATAL (${scriptName}): gain file DOES NOT exist skip `basename $i` " |
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| 172 | continue |
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| 173 | fi |
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| 174 | |
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| 175 | # |
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| 176 | somethingTodo=1 |
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| 177 | input4dataOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n` |
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| 178 | input4dataOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n` |
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| 179 | # |
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| 180 | if [ "<${input4dataOff}>" != "<>" -a "<${input4dataOn}>" != "<>" ]; then |
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| 181 | #look at the content of the datacycle directory as may be the previous batch job has crashed |
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| 182 | tableauOff=( `$ECHO ${input4dataOff}` ) |
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| 183 | IFS=' |
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| 184 | ' |
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| 185 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 186 | IFS=$DefaultIFS |
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| 187 | # |
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| 188 | nTotFilesOff=0 |
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| 189 | for j in ${tableauOff[@]} |
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| 190 | do |
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| 191 | nFiles=`ils ${i}/Off/${j} | $GREP -i "medfiltmtx" | $WC -l` |
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| 192 | nTotFilesOff=`expr ${nTotFilesOff} + ${nFiles}` |
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| 193 | done |
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| 194 | # |
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| 195 | tableauOn=( `$ECHO ${input4dataOn}` ) |
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| 196 | IFS=' |
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| 197 | ' |
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| 198 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 199 | IFS=$DefaultIFS |
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| 200 | # |
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| 201 | nTotFilesOn=0 |
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| 202 | for j in ${tableauOn[@]} |
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| 203 | do |
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| 204 | nFiles=`ils ${i}/On/${j} | $GREP -i "medfiltmtx" | $WC -l` |
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| 205 | nTotFilesOn=`expr ${nTotFilesOn} + ${nFiles}` |
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| 206 | done |
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| 207 | diffOnOff=`expr ${nTotFilesOff} - ${nTotFilesOn}` |
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| 208 | if [ ${diffOnOff} -lt 0 ]; then |
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| 209 | zero=0 |
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| 210 | diffOnOff=`expr ${zero} - ${diffOnOff}` |
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| 211 | fi |
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| 212 | #allow files differences but non zero |
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| 213 | if [ ${nTotFilesOff} -gt 0 -a ${nTotFilesOn} -gt 0 ]; then |
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| 214 | somethingTodo=0 |
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| 215 | $ECHO "DEBUG (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files but OK" |
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| 216 | else |
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| 217 | $ECHO "INFO (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files => one should rebuild has something is wrong" |
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| 218 | fi |
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| 219 | # |
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| 220 | #look at consecutive cycles |
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| 221 | |
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| 222 | rmDirectory=0 |
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| 223 | |
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| 224 | cycleIdOff=`$ECHO $input4dataOff | sed 's/datacycle//g'` |
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| 225 | tableauOff=( `$ECHO ${cycleIdOff}` ) |
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| 226 | IFS=' |
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| 227 | ' |
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| 228 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 229 | IFS=$DefaultIFS |
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| 230 | |
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| 231 | lastIdOff=`expr ${#tableauOff[*]} - 1` |
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| 232 | ncycleOff=`expr ${tableauOff[${lastIdOff}]} - ${tableauOff[0]} + 1` |
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| 233 | ncycleOffVerif=${#tableauOff[*]} |
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| 234 | if [ "<${ncycleOff}>" != "<${ncycleOffVerif}>" ]; then |
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| 235 | $ECHO "$sourceRadio $dateDAQ: There is a lack of OFF cycles in the sequence: ${tableauOff[@]}" |
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| 236 | rmDirectory=1 |
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| 237 | somethingTodo=1 |
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| 238 | else |
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| 239 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive OFF cycles: ${tableauOff[@]}" |
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| 240 | fi |
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| 241 | |
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| 242 | cycleIdOn=`$ECHO $input4dataOn | sed 's/datacycle//g'` |
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| 243 | tableauOn=( `$ECHO ${cycleIdOn}` ) |
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| 244 | IFS=' |
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| 245 | ' |
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| 246 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 247 | IFS=$DefaultIFS |
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| 248 | |
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| 249 | lastIdOn=`expr ${#tableauOn[*]} - 1` |
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| 250 | ncycleOn=`expr ${tableauOn[${lastIdOn}]} - ${tableauOn[0]} + 1` |
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| 251 | ncycleOnVerif=${#tableauOn[*]} |
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| 252 | if [ "<${ncycleOn}>" != "<${ncycleOnVerif}>" ]; then |
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| 253 | $ECHO "$sourceRadio $dateDAQ: There is a lack of ON cycles in the sequence: ${tableauOn[@]}" |
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| 254 | rmDirectory=1 |
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| 255 | somethingTodo=1 |
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| 256 | else |
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| 257 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive ON cycles: ${tableauOn[@]}" |
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| 258 | fi |
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| 259 | |
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| 260 | if [ "<${cycleIdOff}>" != "<${cycleIdOn}>" ]; then |
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| 261 | $ECHO "$sourceRadio $dateDAQ: cycles seq. missmatch ON and OFF" |
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| 262 | rmDirectory=1 |
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| 263 | somethingTodo=1 |
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| 264 | fi |
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| 265 | # |
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| 266 | fi |
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| 267 | ######## |
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| 268 | if [ ${somethingTodo} -eq 1 ]; then |
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| 269 | # |
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| 270 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ANALOFF" |
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| 271 | |
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| 272 | if [ ${rmDirectory} -eq 1 ]; then |
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| 273 | #delete datacycle Off |
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| 274 | dirToRmOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'` |
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| 275 | tableauOff=( `$ECHO ${dirToRmOff}` ) |
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| 276 | IFS=' |
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| 277 | ' |
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| 278 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 279 | IFS=$DefaultIFS |
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| 280 | for j in ${tableauOff[@]} |
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| 281 | do |
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| 282 | irm -f -r -v ${j} |
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| 283 | done |
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| 284 | #delete datacycle On |
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| 285 | dirToRmOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'` |
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| 286 | tableauOn=( `$ECHO ${dirToRmOn}` ) |
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| 287 | IFS=' |
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| 288 | ' |
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| 289 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 290 | IFS=$DefaultIFS |
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| 291 | for j in ${tableauOn[@]} |
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| 292 | do |
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| 293 | irm -f -r -v ${j} |
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| 294 | done |
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| 295 | fi |
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| 296 | |
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| 297 | $RM -f ${tmppublicpath}/proc_script.finished |
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| 298 | if [ ${simulationMode} = "On" ]; then |
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| 299 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF" |
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| 300 | else |
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| 301 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF |
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| 302 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do |
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| 303 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished" |
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| 304 | date +%T |
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| 305 | sleep 60 |
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| 306 | done |
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| 307 | fi |
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| 308 | $ECHO "INFO (${scriptName}): proc_script has finished" |
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| 309 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ OFF" |
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| 310 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ON" |
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| 311 | $RM ${tmppublicpath}/proc_script.finished |
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| 312 | |
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| 313 | if [ ${simulationMode} = "On" ]; then |
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| 314 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON" |
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| 315 | else |
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| 316 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON |
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| 317 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do |
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| 318 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished" |
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| 319 | date +%T |
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| 320 | sleep 60 |
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| 321 | done |
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| 322 | fi |
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| 323 | $ECHO "INFO (${scriptName}): proc_script has finished" |
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| 324 | $RM ${tmppublicpath}/proc_script.finished |
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| 325 | #Todo see if there is errors in the log file before copy |
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| 326 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ ON" |
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| 327 | fi |
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| 328 | done |
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| 329 | |
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| 330 | exit 0 |
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