[535] | 1 | #!/bin/sh |
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| 2 | #liste des "sources" enregistrees sous Amas |
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| 3 | AWK=/bin/awk |
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| 4 | SED=/bin/sed |
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| 5 | GREP=/bin/grep |
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| 6 | WC=/usr/bin/wc |
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| 7 | RM=/bin/rm |
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| 8 | CAT=/bin/cat |
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| 9 | TOUCH=/bin/touch |
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| 10 | DATE=/bin/date |
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| 11 | ECHO=/bin/echo |
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| 12 | LS=/bin/ls |
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| 13 | MKDIR=/bin/mkdir |
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| 14 | TR=/usr/bin/tr |
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| 15 | FIND=/usr/bin/find |
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| 16 | PRINTF=/usr/bin/printf |
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| 17 | XARGS=/usr/bin/xargs |
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| 18 | SORT=/bin/sort |
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| 19 | QSUB=qsub |
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| 20 | |
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| 21 | DefaultIFS=$' \t\n' |
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| 22 | IFS=$DefaultIFS |
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| 23 | |
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| 24 | trim() { echo $1; } |
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| 25 | |
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| 26 | |
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| 27 | # Irods environment settings |
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| 28 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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| 29 | |
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| 30 | scriptName="`basename $0`" |
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| 31 | $ECHO "Processing script ${scriptName} at `date`" |
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| 32 | |
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| 33 | #Path to public backupable path |
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| 34 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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| 35 | |
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| 36 | |
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| 37 | #temporary files to synchronize scripts |
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| 38 | tmppublicpath=${TMPPUBLICPATH} |
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| 39 | $LS -l ${tmppublicpath} > /dev/null |
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| 40 | |
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| 41 | |
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| 42 | #Path where the job will do temporary IO |
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[579] | 43 | . ${SCRIPTPATH}/set_iojobpath.sh |
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| 44 | iojobpath=$(set_iojobpath) |
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[535] | 45 | cd ${iojobpath} |
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| 46 | |
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| 47 | |
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| 48 | OUT1=./baoils.$$ |
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| 49 | ils /baoradio/data/AmasNancay/ > ${OUT1} |
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| 50 | OUT2=./baoawk1.$$ |
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| 51 | $AWK '($1=="C-") {print $2}' ${OUT1} > ${OUT2} |
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| 52 | $RM $OUT1 |
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| 53 | #Sequence |
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| 54 | tableau=( `$CAT $OUT2 | $AWK '{print $1}'` ) |
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| 55 | IFS=' |
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| 56 | ' |
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| 57 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 58 | IFS=$DefaultIFS |
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| 59 | |
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| 60 | $RM $OUT2 |
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| 61 | |
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| 62 | for i in ${tableau[@]} |
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| 63 | do |
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| 64 | OUT2=./baodir.$$ |
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| 65 | $ECHO "source $i" |
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| 66 | listedate=( `ils $i | $AWK '($1=="C-"){print $2}'`) |
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| 67 | IFS=' |
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| 68 | ' |
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| 69 | listedate=( $( $PRINTF "%s\n" "${listedate[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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| 70 | IFS=$DefaultIFS |
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| 71 | |
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| 72 | for j in ${listedate[@]} |
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| 73 | do |
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| 74 | ils -l $j 2>&1 | $GREP -i "sca" > ${OUT2} |
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| 75 | #test if the SCA file has been already processed |
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| 76 | scatrans=`$GREP -i "sca.*\.sum\.trans" ${OUT2} | $AWK '{print $NF}'` |
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| 77 | #test if the file is empty due to previous processing dysfunction |
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| 78 | emptyfile=`$GREP -i "sca.*\.sum\.trans" ${OUT2} | $AWK '{print $4}'` |
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| 79 | # echo "scrutinize directory <$i>: [$nblines] [$scatrans]" |
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| 80 | if [ "<${scatrans}>" != "<>" ]; then |
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| 81 | scafile=`$GREP -i "sca.*\.sum\.trans" ${OUT2} | $AWK '{print $NF}'` |
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| 82 | if [ "<${scafile}>" = "<>" ]; then |
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| 83 | $ECHO "WARNING (${scriptName}): Cannot download a SCA file for $j" |
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| 84 | else |
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| 85 | #get sca file |
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| 86 | iget -r -f -K ${j}/${scafile} |
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| 87 | ncycle=`$CAT ${scafile} | $WC -l` |
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| 88 | $RM ${scafile} |
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| 89 | $ECHO ">>> $j ---> ${ncycle} cycles" |
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| 90 | fi |
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| 91 | else |
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| 92 | $ECHO ">>> $j ---> NO SCA summary" |
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| 93 | fi |
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| 94 | done |
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| 95 | $RM ${OUT2} |
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| 96 | done |
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| 97 | |
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| 98 | |
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| 99 | |
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