[580] | 1 | #!/bin/sh -xv |
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| 2 | AWK=/bin/awk |
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| 3 | SED=/bin/sed |
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| 4 | GREP=/bin/grep |
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| 5 | WC=/usr/bin/wc |
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| 6 | RM=/bin/rm |
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| 7 | CAT=/bin/cat |
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| 8 | TOUCH=/bin/touch |
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| 9 | DATE=/bin/date |
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| 10 | ECHO=/bin/echo |
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| 11 | LS=/bin/ls |
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| 12 | MKDIR=/bin/mkdir |
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| 13 | TR=/usr/bin/tr |
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| 14 | FIND=/usr/bin/find |
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| 15 | PRINTF=/usr/bin/printf |
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| 16 | XARGS=/usr/bin/xargs |
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| 17 | SORT=/bin/sort |
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| 18 | QSUB=qsub |
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| 19 | |
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| 20 | DefaultIFS=$' \t\n' |
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| 21 | IFS=$DefaultIFS |
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| 22 | |
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| 23 | |
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| 24 | scriptName="`basename $0`" |
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| 25 | echo "Processing script ${scriptName} at `date`" |
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| 26 | |
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| 27 | #Process cmd line args: the -src option is mandatory (source name as Abell85) |
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| 28 | #action: gain|mspec (gain: gain-like doucble median filtering |
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| 29 | # mspec: mean+sigma wo filetring) |
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| 30 | action="-act gain" |
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| 31 | sourceRadio= |
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| 32 | dateSelected= |
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| 33 | typeofproc= |
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| 34 | #first and last cycle to process |
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| 35 | # |
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| 36 | firstCycle= |
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| 37 | lastCycle= |
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| 38 | #use -sim option to simulate processing (debug the script as if...) |
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| 39 | simulationMode="" |
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[626] | 40 | #drift scan option |
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[627] | 41 | drift="No" |
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[580] | 42 | while [ $# -gt 0 ] |
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| 43 | do |
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| 44 | case "$1" in |
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| 45 | -act) action="-act $2"; act=$2; shift;; |
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| 46 | -src) sourceRadio="$2"; shift;; |
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| 47 | -date) dateSelected="-date $2"; dateJob="$2"; shift;; |
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| 48 | -type) typeofproc="-type $2"; type=$2; shift;; |
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| 49 | -fcycle) firstCycle="-fcycle $2"; fcycle="$2"; shift;; |
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| 50 | -lcycle) lastCycle="-lcycle $2"; lcycle="$2"; shift;; |
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[627] | 51 | -drift) drift="Yes";; |
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[580] | 52 | -sim) |
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| 53 | simulationMode="-sim On" |
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| 54 | $ECHO "INFO ${scriptName} running in SIMUL mode";; |
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| 55 | -h) |
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| 56 | echo >&2 \ |
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[595] | 57 | "usage: $0 -src source -date YYYYMMDD -type type [-fcycle firstCycle] [-lcycle lastCycle] [-sim to trig simulation mode]" |
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[580] | 58 | exit 1;; |
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| 59 | *) break;; # terminate while loop |
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| 60 | esac |
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| 61 | shift |
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| 62 | done |
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| 63 | |
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| 64 | if [ "<${sourceRadio}>" = "<>" ]; then |
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| 65 | $ECHO "FATAL: You have forgotten to select the source option (-src)" |
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| 66 | exit 1 |
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| 67 | fi |
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| 68 | |
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| 69 | if [ "<${dateSelected}>" = "<>" ]; then |
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| 70 | $ECHO "FATAL: You have forgotten to select the date option (-date)" |
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| 71 | exit 1 |
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| 72 | fi |
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| 73 | |
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| 74 | if [ "<${typeofproc}>" = "<>" ]; then |
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| 75 | $ECHO "FATAL: You have forgotten to select the type option (-type)" |
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| 76 | exit 1 |
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| 77 | fi |
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| 78 | |
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| 79 | #Path to public backupable path |
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| 80 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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| 81 | #temporary files to synchronize scripts |
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| 82 | tmppublicpath=${TMPPUBLICPATH} |
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| 83 | #Path of the utility scripts |
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| 84 | scriptpath=${SCRIPTPATH} |
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| 85 | #get the daq current irod status |
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| 86 | #JEC 1/10/11 Use generic baodaqstatus name |
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| 87 | #### tag=`${DATE} +%F` |
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| 88 | OUT1=${publicpath}/baodaqstatus-current.txt |
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| 89 | |
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| 90 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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| 91 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem" |
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| 92 | exit 1 |
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| 93 | fi |
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| 94 | |
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[597] | 95 | #assume 2*10 files/cycles cf. 30sec/cycle et 3sec par signal et fact 2 margin |
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| 96 | # Test: assume for Abell1205, aout2011, 2*20 files |
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[635] | 97 | if [ "<${type}>" = "<GAIN>" -o "<${type}>" = "<GAINDS>" ]; then |
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| 98 | guessFiles=10 |
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| 99 | elif [ "<$drift>" != "<Yes>" ]; then |
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[626] | 100 | guessFiles=40 |
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| 101 | else |
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[635] | 102 | guessFiles=120 |
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[626] | 103 | fi |
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| 104 | |
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[580] | 105 | if [ "<${firstCycle}>" != "<>" -a "<${lastCycle}>" != "<>" ]; then |
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| 106 | jobBatchName="procspecmfib-${sourceRadio}${dateJob}${type}-${fcycle}-${lcycle}" |
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| 107 | nFiles=`expr ${lcycle} - ${fcycle} + 1` |
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[597] | 108 | nFiles=`expr ${nFiles} \* ${guessFiles}` |
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[580] | 109 | else |
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| 110 | jobBatchName="procspecmfib-${sourceRadio}${dateJob}${type}-All" |
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[635] | 111 | #assume 20 cycles maxi! |
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| 112 | nFiles=`expr ${guessFiles} \* 20` |
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[580] | 113 | |
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| 114 | fi |
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| 115 | |
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| 116 | jobLogName="${jobBatchName}.log.$$" |
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| 117 | |
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| 118 | #Nbre de paquets utilises pour 1 spectre |
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| 119 | tspwin="5120" |
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| 120 | #calcul du scratch sachant que l'on nettoie apres chaque cycle |
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[597] | 121 | nSpectra=`expr ${guessFiles} \* 25600 / ${tspwin}` |
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| 122 | scratchSize=`expr ${guessFiles} \* 500 + ${nSpectra} \* 200 / 1000 + 5` |
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[580] | 123 | |
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| 124 | #le cpu total tient compte de l'emsemble des ficheirs a traiter |
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| 125 | #cpu=`expr ${nFiles} \* 60 \* 50` # BQS estimation |
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| 126 | cpu=`expr ${nFiles} \* 60` |
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| 127 | |
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[598] | 128 | qsub -P P_baoradio -l sps=1,irods=1,ct=${cpu},vmem=1000M,fsize=${scratchSize}M -o ${PWD}/${jobLogName} -j yes -N $jobBatchName -m be -M ${LOGNAME}@lal.in2p3.fr -V <<EOF |
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[580] | 129 | |
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| 130 | ${SCRIPTPATH}/proc_specmfib.sh ${action} -src ${sourceRadio} ${dateSelected} ${typeofproc} ${firstCycle} ${lastCycle} ${simulationMode} |
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| 131 | EOF |
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