| 1 | #!/bin/sh
|
|---|
| 2 | #Perform the ON-OFF analysis
|
|---|
| 3 | DATE=/bin/date
|
|---|
| 4 | GREP=/bin/grep
|
|---|
| 5 | AWK=/bin/awk
|
|---|
| 6 | ECHO=/bin/echo
|
|---|
| 7 | WC=/usr/bin/wc
|
|---|
| 8 | CAT=/bin/cat
|
|---|
| 9 | PRINTF=/usr/bin/printf
|
|---|
| 10 | FIND=/usr/bin/find
|
|---|
| 11 | MKDIR=/bin/mkdir
|
|---|
| 12 | XARGS=/usr/bin/xargs
|
|---|
| 13 | SORT=/bin/sort
|
|---|
| 14 | RM=/bin/rm
|
|---|
| 15 | TR=/usr/bin/tr
|
|---|
| 16 | CP=/bin/cp
|
|---|
| 17 | LS=/bin/ls
|
|---|
| 18 | CHMOD=/bin/chmod
|
|---|
| 19 |
|
|---|
| 20 | DefaultIFS=$' \t\n'
|
|---|
| 21 | IFS=$DefaultIFS
|
|---|
| 22 |
|
|---|
| 23 | #set Irods environment
|
|---|
| 24 | . /usr/local/shared/bin/irods_env.sh -noverbose
|
|---|
| 25 |
|
|---|
| 26 | scriptName="`basename $0`"
|
|---|
| 27 | $ECHO "Processing script ${scriptName} at `date`"
|
|---|
| 28 | #which source to analyse
|
|---|
| 29 |
|
|---|
| 30 | #Process cmd line args: the -src option is mandatory (source name as Abell85)
|
|---|
| 31 | sourceRadio=
|
|---|
| 32 | dateSelected=
|
|---|
| 33 | #use -sim option to simulate processing (debug the script as if...)
|
|---|
| 34 | simulationMode=Off
|
|---|
| 35 | while [ $# -gt 0 ]
|
|---|
| 36 | do
|
|---|
| 37 | case "$1" in
|
|---|
| 38 | -src) sourceRadio=$2; shift;;
|
|---|
| 39 | -date) dateSelected=$2; shift;;
|
|---|
| 40 | -sim) simulationMode=On;;
|
|---|
| 41 | -h)
|
|---|
| 42 | echo >&2 \
|
|---|
| 43 | "usage: $0 -src souce -date YYYYMMDD [-freq freq in MHz (default ${freqBAOCalib})] [-sim to trig simulation mode]"
|
|---|
| 44 | exit 1;;
|
|---|
| 45 | *) break;; # terminate while loop
|
|---|
| 46 | esac
|
|---|
| 47 | shift
|
|---|
| 48 | done
|
|---|
| 49 |
|
|---|
| 50 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 51 | $ECHO "INFO ${scriptName} running in SIMUL mode"
|
|---|
| 52 | fi
|
|---|
| 53 |
|
|---|
| 54 | if [ "<${sourceRadio}>" = "<>" ]; then
|
|---|
| 55 | $ECHO "FATAL: You have forgotten to select the source option (-src)"
|
|---|
| 56 | exit 1
|
|---|
| 57 | fi
|
|---|
| 58 |
|
|---|
| 59 | case ${sourceRadio} in
|
|---|
| 60 | Abell85) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 61 | Abell2440) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 62 | Abell1205) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 63 | *) ECHO "FATAL (${scriptName}): process ${sourceRadio} not yet foreseen"
|
|---|
| 64 | exit 1;;
|
|---|
| 65 | esac
|
|---|
| 66 |
|
|---|
| 67 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" `
|
|---|
| 68 |
|
|---|
| 69 | #Path to public backupable path
|
|---|
| 70 | publicpath="/afs/in2p3.fr/home/c/campagne/public"
|
|---|
| 71 |
|
|---|
| 72 |
|
|---|
| 73 | #temporary files to synchronize scripts
|
|---|
| 74 | tmppublicpath=${TMPPUBLICPATH}
|
|---|
| 75 | #wakeup the NFS disk
|
|---|
| 76 | $LS -l ${tmppublicpath} > /dev/null
|
|---|
| 77 | #clean previous spurious files
|
|---|
| 78 | $RM -f ${tmppublicpath}/*.finished
|
|---|
| 79 |
|
|---|
| 80 | #Path where the job will do temporary IO
|
|---|
| 81 | if [ ${ENVIRONMENT} = "INTERACTIVE" ]; then
|
|---|
| 82 | iojobpath="/sps/baoradio/AmasNancay/JEC"
|
|---|
| 83 | $MKDIR -p $iojobpath
|
|---|
| 84 | elif [ ${ENVIRONMENT} = "BATCH" ] ; then
|
|---|
| 85 | iojobpath=${TMPBATCH}
|
|---|
| 86 | else
|
|---|
| 87 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed"
|
|---|
| 88 | exit 1
|
|---|
| 89 | fi
|
|---|
| 90 | cd ${iojobpath}
|
|---|
| 91 |
|
|---|
| 92 | localpath="${sourceRadio}"
|
|---|
| 93 | $MKDIR -p ./${localpath}
|
|---|
| 94 | cd ./${localpath}
|
|---|
| 95 |
|
|---|
| 96 | #save the top directory
|
|---|
| 97 | topDir=`pwd`
|
|---|
| 98 |
|
|---|
| 99 | #Path of the utility scripts
|
|---|
| 100 | scriptpath="/afs/in2p3.fr/home/c/campagne/private/work/AmasNancay"
|
|---|
| 101 |
|
|---|
| 102 | #get the daq current irod status
|
|---|
| 103 | tag=`${DATE} +%F`
|
|---|
| 104 | OUT1=${publicpath}/baodaqstatus-${tag}.txt
|
|---|
| 105 |
|
|---|
| 106 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then
|
|---|
| 107 | $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
|
|---|
| 108 | $RM -f ${tmppublicpath}/statusdaq.finished
|
|---|
| 109 | ${scriptpath}/statusdaq.sh > ${OUT1}
|
|---|
| 110 | while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
|
|---|
| 111 | sleep 30
|
|---|
| 112 | done
|
|---|
| 113 | $RM ${tmppublicpath}/statusdaq.finished
|
|---|
| 114 | #protect against remove/rewriting
|
|---|
| 115 | $CHMOD -v 444 ${OUT1}
|
|---|
| 116 | fi
|
|---|
| 117 |
|
|---|
| 118 |
|
|---|
| 119 | #Nb: if we want to implement a loop on sources we have to take care of srclower...
|
|---|
| 120 |
|
|---|
| 121 | $ECHO "You have selected sourceRadio = ${sourceRadio} [date = ${dateSelected}]"
|
|---|
| 122 | tableau=( `$GREP -i "${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` )
|
|---|
| 123 | IFS='
|
|---|
| 124 | '
|
|---|
| 125 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 126 | IFS=$DefaultIFS
|
|---|
| 127 |
|
|---|
| 128 |
|
|---|
| 129 | for i in ${tableau[@]}
|
|---|
| 130 | do
|
|---|
| 131 | #
|
|---|
| 132 | # start a "fresh" session
|
|---|
| 133 | cd ${topDir}
|
|---|
| 134 | $LS | $XARGS -i $RM -rf {}
|
|---|
| 135 |
|
|---|
| 136 | $ECHO "DEBUG: (${scriptName}) irods root dir $i"
|
|---|
| 137 | dateDAQ=`$ECHO ${i} | $AWK '{split($0,a,"/"); print a[6];}' | $AWK "{sub(/${srclower}/,\"\"); print}"`
|
|---|
| 138 |
|
|---|
| 139 | $ECHO "DEBUG: (${scriptName}): we are in directory `pwd` the topDir=${topDir}"
|
|---|
| 140 | $LS -lrt
|
|---|
| 141 |
|
|---|
| 142 |
|
|---|
| 143 | #Look if the date has changed since beginning of the job!
|
|---|
| 144 | curtag=`${DATE} +%F`
|
|---|
| 145 | if [ "<${curtag}>" != "<${tag}>" ]; then
|
|---|
| 146 | tag=${curtag}
|
|---|
| 147 | #it is necessary to update the daq status as the day has changed during the processing... (batch can take a long time...)
|
|---|
| 148 | OUT1=${publicpath}/baodaqstatus-${curtag}.txt
|
|---|
| 149 | $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
|
|---|
| 150 | $RM -f ${tmppublicpath}/statusdaq.finished
|
|---|
| 151 | ${scriptpath}/statusdaq.sh > ${OUT1}
|
|---|
| 152 | while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
|
|---|
| 153 | sleep 30
|
|---|
| 154 | done
|
|---|
| 155 | $RM ${tmppublicpath}/statusdaq.finished
|
|---|
| 156 | #protect against remove/rewriting
|
|---|
| 157 | $CHMOD -v 444 ${OUT1}
|
|---|
| 158 | fi
|
|---|
| 159 | #
|
|---|
| 160 | # look if the gain & calibration files exist
|
|---|
| 161 | #
|
|---|
| 162 | gainDone=`ils ${i} 2>&1 | $GREP -i "gain_.*\.fits" | $WC -l`
|
|---|
| 163 | if [ ! ${gainDone} -gt 0 ]; then
|
|---|
| 164 | $ECHO "FATAL (${scriptName}): gain file DOES NOT exist skip `basename $i` "
|
|---|
| 165 | continue
|
|---|
| 166 | fi
|
|---|
| 167 |
|
|---|
| 168 | #
|
|---|
| 169 | somethingTodo=1
|
|---|
| 170 | input4dataOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
|
|---|
| 171 | input4dataOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
|
|---|
| 172 | #
|
|---|
| 173 | if [ "<${input4dataOff}>" != "<>" -a "<${input4dataOn}>" != "<>" ]; then
|
|---|
| 174 | #look at the content of the datacycle directory as may be the previous batch job has crashed
|
|---|
| 175 | tableauOff=( `$ECHO ${input4dataOff}` )
|
|---|
| 176 | IFS='
|
|---|
| 177 | '
|
|---|
| 178 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 179 | IFS=$DefaultIFS
|
|---|
| 180 | #
|
|---|
| 181 | nTotFilesOff=0
|
|---|
| 182 | for j in ${tableauOff[@]}
|
|---|
| 183 | do
|
|---|
| 184 | nFiles=`ils ${i}/Off/${j} | $GREP -i "medfiltmtx" | $WC -l`
|
|---|
| 185 | nTotFilesOff=`expr ${nTotFilesOff} + ${nFiles}`
|
|---|
| 186 | done
|
|---|
| 187 | #
|
|---|
| 188 | tableauOn=( `$ECHO ${input4dataOn}` )
|
|---|
| 189 | IFS='
|
|---|
| 190 | '
|
|---|
| 191 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 192 | IFS=$DefaultIFS
|
|---|
| 193 | #
|
|---|
| 194 | nTotFilesOn=0
|
|---|
| 195 | for j in ${tableauOn[@]}
|
|---|
| 196 | do
|
|---|
| 197 | nFiles=`ils ${i}/On/${j} | $GREP -i "medfiltmtx" | $WC -l`
|
|---|
| 198 | nTotFilesOn=`expr ${nTotFilesOn} + ${nFiles}`
|
|---|
| 199 | done
|
|---|
| 200 | diffOnOff=`expr ${nTotFilesOff} - ${nTotFilesOn}`
|
|---|
| 201 | if [ ${diffOnOff} -lt 0 ]; then
|
|---|
| 202 | zero=0
|
|---|
| 203 | diffOnOff=`expr ${zero} - ${diffOnOff}`
|
|---|
| 204 | fi
|
|---|
| 205 | #allow files differences but non zero
|
|---|
| 206 | if [ ${nTotFilesOff} -gt 0 -a ${nTotFilesOn} -gt 0 ]; then
|
|---|
| 207 | somethingTodo=0
|
|---|
| 208 | $ECHO "DEBUG (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files but OK"
|
|---|
| 209 | else
|
|---|
| 210 | $ECHO "INFO (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files => one should rebuild has something is wrong"
|
|---|
| 211 | fi
|
|---|
| 212 | #
|
|---|
| 213 | #look at consecutive cycles
|
|---|
| 214 |
|
|---|
| 215 | rmDirectory=0
|
|---|
| 216 |
|
|---|
| 217 | cycleIdOff=`$ECHO $input4dataOff | sed 's/datacycle//g'`
|
|---|
| 218 | tableauOff=( `$ECHO ${cycleIdOff}` )
|
|---|
| 219 | IFS='
|
|---|
| 220 | '
|
|---|
| 221 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 222 | IFS=$DefaultIFS
|
|---|
| 223 |
|
|---|
| 224 | lastIdOff=`expr ${#tableauOff[*]} - 1`
|
|---|
| 225 | ncycleOff=`expr ${tableauOff[${lastIdOff}]} - ${tableauOff[0]} + 1`
|
|---|
| 226 | ncycleOffVerif=${#tableauOff[*]}
|
|---|
| 227 | if [ "<${ncycleOff}>" != "<${ncycleOffVerif}>" ]; then
|
|---|
| 228 | $ECHO "$sourceRadio $dateDAQ: There is a lack of OFF cycles in the sequence: ${tableauOff[@]}"
|
|---|
| 229 | rmDirectory=1
|
|---|
| 230 | somethingTodo=1
|
|---|
| 231 | else
|
|---|
| 232 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive OFF cycles: ${tableauOff[@]}"
|
|---|
| 233 | fi
|
|---|
| 234 |
|
|---|
| 235 | cycleIdOn=`$ECHO $input4dataOn | sed 's/datacycle//g'`
|
|---|
| 236 | tableauOn=( `$ECHO ${cycleIdOn}` )
|
|---|
| 237 | IFS='
|
|---|
| 238 | '
|
|---|
| 239 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 240 | IFS=$DefaultIFS
|
|---|
| 241 |
|
|---|
| 242 | lastIdOn=`expr ${#tableauOn[*]} - 1`
|
|---|
| 243 | ncycleOn=`expr ${tableauOn[${lastIdOn}]} - ${tableauOn[0]} + 1`
|
|---|
| 244 | ncycleOnVerif=${#tableauOn[*]}
|
|---|
| 245 | if [ "<${ncycleOn}>" != "<${ncycleOnVerif}>" ]; then
|
|---|
| 246 | $ECHO "$sourceRadio $dateDAQ: There is a lack of ON cycles in the sequence: ${tableauOn[@]}"
|
|---|
| 247 | rmDirectory=1
|
|---|
| 248 | somethingTodo=1
|
|---|
| 249 | else
|
|---|
| 250 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive ON cycles: ${tableauOn[@]}"
|
|---|
| 251 | fi
|
|---|
| 252 |
|
|---|
| 253 | if [ "<${cycleIdOff}>" != "<${cycleIdOn}>" ]; then
|
|---|
| 254 | $ECHO "$sourceRadio $dateDAQ: cycles seq. missmatch ON and OFF"
|
|---|
| 255 | rmDirectory=1
|
|---|
| 256 | somethingTodo=1
|
|---|
| 257 | fi
|
|---|
| 258 | #
|
|---|
| 259 | fi
|
|---|
| 260 | ########
|
|---|
| 261 | if [ ${somethingTodo} -eq 1 ]; then
|
|---|
| 262 | #
|
|---|
| 263 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ANALOFF"
|
|---|
| 264 |
|
|---|
| 265 | if [ ${rmDirectory} -eq 1 ]; then
|
|---|
| 266 | #delete datacycle Off
|
|---|
| 267 | dirToRmOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'`
|
|---|
| 268 | tableauOff=( `$ECHO ${dirToRmOff}` )
|
|---|
| 269 | IFS='
|
|---|
| 270 | '
|
|---|
| 271 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 272 | IFS=$DefaultIFS
|
|---|
| 273 | for j in ${tableauOff[@]}
|
|---|
| 274 | do
|
|---|
| 275 | irm -f -r -v ${j}
|
|---|
| 276 | done
|
|---|
| 277 | #delete datacycle On
|
|---|
| 278 | dirToRmOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'`
|
|---|
| 279 | tableauOn=( `$ECHO ${dirToRmOn}` )
|
|---|
| 280 | IFS='
|
|---|
| 281 | '
|
|---|
| 282 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 283 | IFS=$DefaultIFS
|
|---|
| 284 | for j in ${tableauOn[@]}
|
|---|
| 285 | do
|
|---|
| 286 | irm -f -r -v ${j}
|
|---|
| 287 | done
|
|---|
| 288 | fi
|
|---|
| 289 |
|
|---|
| 290 | $RM -f ${tmppublicpath}/proc_script.finished
|
|---|
| 291 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 292 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF"
|
|---|
| 293 | else
|
|---|
| 294 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF
|
|---|
| 295 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
|
|---|
| 296 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
|
|---|
| 297 | date +%T
|
|---|
| 298 | sleep 60
|
|---|
| 299 | done
|
|---|
| 300 | fi
|
|---|
| 301 | $ECHO "INFO (${scriptName}): proc_script has finished"
|
|---|
| 302 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ OFF"
|
|---|
| 303 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ON"
|
|---|
| 304 | $RM ${tmppublicpath}/proc_script.finished
|
|---|
| 305 |
|
|---|
| 306 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 307 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON"
|
|---|
| 308 | else
|
|---|
| 309 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON
|
|---|
| 310 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
|
|---|
| 311 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
|
|---|
| 312 | date +%T
|
|---|
| 313 | sleep 60
|
|---|
| 314 | done
|
|---|
| 315 | fi
|
|---|
| 316 | $ECHO "INFO (${scriptName}): proc_script has finished"
|
|---|
| 317 | $RM ${tmppublicpath}/proc_script.finished
|
|---|
| 318 | #Todo see if there is errors in the log file before copy
|
|---|
| 319 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ ON"
|
|---|
| 320 | fi
|
|---|
| 321 | done
|
|---|
| 322 |
|
|---|
| 323 | exit 0
|
|---|
