1 | #!/bin/sh |
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2 | #Status de l'etat de la production des fichiers INPUT de calibrations |
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3 | GREP=/bin/grep |
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4 | AWK=/bin/awk |
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5 | ECHO=/bin/echo |
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6 | MKDIR=/bin/mkdir |
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7 | CAT=/bin/cat |
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8 | PRINTF=/usr/bin/printf |
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9 | RM=/bin/rm |
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10 | SORT=/bin/sort |
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11 | XARGS=/usr/bin/xargs |
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12 | WC=/usr/bin/wc |
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13 | DefaultIFS=$' \t\n' |
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14 | IFS=$DefaultIFS |
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15 | |
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16 | # Irods environment settings |
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17 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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18 | |
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19 | scriptName="`basename $0`" |
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20 | $ECHO "Processing script ${scriptName} at `date`" |
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21 | |
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22 | #Path to public backupable path |
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23 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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24 | |
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25 | #Path where the job will do temporary IO |
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26 | if [ ${ENVIRONMENT} == "INTERACTIVE" ]; then |
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27 | iojobpath="/sps/baoradio/AmasNancay/JEC" |
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28 | $MKDIR -p $iojobpath |
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29 | elif [ ${ENVIRONMENT} == "BATCH" ] ; then |
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30 | iojobpath=${TMPBATCH} |
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31 | else |
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32 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed" |
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33 | exit 1 |
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34 | fi |
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35 | cd ${iojobpath} |
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36 | |
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37 | |
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38 | OUT1=./baoils.$$ |
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39 | ils /baoradio/data/AmasNancay/ > ${OUT1} |
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40 | OUT2=./baoawk1.$$ |
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41 | $AWK '($1=="C-") {print $2}' ${OUT1} > ${OUT2} |
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42 | $RM $OUT1 |
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43 | #Sequence |
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44 | listeSources=( `$CAT $OUT2 | $AWK '{print $1}'` ) |
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45 | IFS=' |
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46 | ' |
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47 | listeSources=( $( $PRINTF "%s\n" "${listeSources[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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48 | IFS=$DefaultIFS |
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49 | $RM $OUT2 |
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50 | |
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51 | for i in ${listeSources[@]} |
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52 | do |
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53 | #nb: $i contains the full path |
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54 | $ECHO "source ${i}" |
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55 | sourceName=`basename ${i}` |
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56 | listeDates=( `ils $i | $AWK '($1=="C-"){print $2}'`) |
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57 | IFS=' |
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58 | ' |
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59 | listeDates=( $( $PRINTF "%s\n" "${listeDates[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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60 | IFS=$DefaultIFS |
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61 | |
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62 | for j in ${listeDates[@]} |
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63 | do |
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64 | #nb: $j contains the full path |
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65 | # $ECHO "run ${j}" |
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66 | # |
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67 | #Off directory |
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68 | # |
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69 | dateField=`basename ${j}` |
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70 | sourceDate="${sourceName}-${dateField}" |
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71 | #look if final calibration files exist |
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72 | calibOk=`ils ${j} | $GREP -i "calib_" | $WC -l` |
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73 | |
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74 | offDirExist=`ils ${j} | $GREP -i "Off" | $WC -l` |
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75 | if [ ${offDirExist} != 0 ]; then |
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76 | listeCyclesOff=( `ils ${j}/Off | $GREP -i "calibcycle" | $AWK '($1=="C-"){print $2}' | $XARGS -i basename {} | $SORT -k1.11n` ) |
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77 | IFS=' |
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78 | ' |
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79 | listeCyclesOff=( $( $PRINTF "%s\n" "${listeCyclesOff[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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80 | IFS=$DefaultIFS |
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81 | |
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82 | if [ ${#listeCyclesOff[*]} != 0 ]; then |
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83 | for c in ${listeCyclesOff[@]} |
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84 | do |
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85 | #nb: $c has the format of calibcycle<number> |
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86 | nFiles=`ils ${j}/Off/${c} | $GREP -i "medfiltmtx" | $WC -l` |
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87 | if [ ${nFiles} != 0 ]; then |
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88 | $ECHO "${sourceDate}/Off/${c}: ${nFiles} spectra (${calibOk} calib)" |
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89 | else |
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90 | $ECHO "${sourceDate}/Off/${c}: Calibration failed" |
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91 | fi |
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92 | #end of loop on cycles |
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93 | done |
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94 | else |
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95 | $ECHO "${sourceDate} : No Calibration done for Off Diectory" |
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96 | fi |
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97 | #end of Off exist |
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98 | else |
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99 | $ECHO "${sourceDate} : No Off Diectory" |
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100 | fi |
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101 | # |
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102 | #On directory |
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103 | # |
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104 | dateField=`basename ${j}` |
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105 | sourceDate="${sourceName}-${dateField}" |
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106 | #look if final calibration files exist |
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107 | calibOk=`ils ${j} | $GREP -i "calib_" | $WC -l` |
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108 | onDirExist=`ils ${j} | $GREP -i "On" | $WC -l` |
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109 | if [ ${onDirExist} != 0 ]; then |
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110 | listeCyclesOn=( `ils ${j}/On | $GREP -i "calibcycle" | $AWK '($1=="C-"){print $2}' | $XARGS -i basename {} | $SORT -k1.11n` ) |
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111 | IFS=' |
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112 | ' |
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113 | listeCyclesOn=( $( $PRINTF "%s\n" "${listeCyclesOn[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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114 | IFS=$DefaultIFS |
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115 | |
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116 | if [ ${#listeCyclesOn[*]} != 0 ]; then |
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117 | for c in ${listeCyclesOn[@]} |
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118 | do |
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119 | #nb: $c has the format of calibcycle<number> |
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120 | nFiles=`ils ${j}/On/${c} | $GREP -i "medfiltmtx" | $WC -l` |
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121 | if [ ${nFiles} != 0 ]; then |
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122 | $ECHO "${sourceDate}/On/${c}: ${nFiles} spectra (${calibOk} calib)" |
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123 | else |
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124 | $ECHO "${sourceDate}/On/${c}: Calibration failed" |
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125 | fi |
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126 | #end of loop on cycles |
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127 | done |
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128 | else |
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129 | $ECHO "${sourceDate} : No Calibration done for On Diectory" |
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130 | fi |
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131 | #end of On exist |
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132 | else |
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133 | $ECHO "${sourceDate} : No On Diectory" |
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134 | fi |
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135 | #end of loop on dates |
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136 | done |
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137 | #end of loop on sources |
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138 | done |
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