| 1 | Title: Status of the programs and scripts used for Amas@Nancay analysis at CCIN2P3
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| 2 | Revision: 11/10/11 (JEC)
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| 3 | Author: J.E Campagne 22/7/11
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| 4 | ----------------------------
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| 5 |
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| 6 | Intro:
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| 7 | All these tools are located for the while in J.E Campagne private directory, so they are not
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| 8 | yet available to public usage and this note is essentially for information and software tracking.
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| 9 |
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| 10 | -----------------------------------------------------------
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| 11 | Analysis program
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| 12 | ------------------------------------------------------------
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| 13 | o analysis.cc
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| 14 | - perfom
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| 15 | . gain spectra determination + monitoring
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| 16 | . ON-OFF spectra without calibration
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| 17 | . calibration coefficient determination + monitoring
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| 18 | . ON-OFF spectra determination (no RT calibration included)
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| 19 | - Todo
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| 20 | . include RT calibration, or a RT/BAO calibration using a calibrator source
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| 21 | - comments
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| 22 | . the STANDARD usage since end september 11 is GAIN + ON-OFF wo calibration
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| 23 |
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| 24 | -----------------------------------------------------------
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| 25 | Collection of Bourne SHELL script for analysis
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| 26 | ------------------------------------------------------------
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| 27 |
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| 28 | A) Utilitary scripts to follow the DAQ & Analysis progress
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| 29 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 30 | o mkarchive.sh
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| 31 | ---------------
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| 32 | - perform the archive of a processing in Irods
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| 33 | . create a <ppTag>Arch<apTag> directory
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| 34 | . move the cabli_*.txt files
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| 35 | . move the *.ppf / *.fits files results of the analysis
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| 36 | . for the gain...fits only a copy is done to keep a version
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| 37 | . move the Off and On directorys
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| 38 | . create new fresh On and Off directory
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| 39 |
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| 40 |
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| 41 | o statusdaq.sh
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| 42 | --------------
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| 43 | - perform
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| 44 | . scan all the /baoradio/data/AmamNancay to look at the directories and and make
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| 45 | a summary of the Data Acquisition
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| 46 |
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| 47 | o statusheader.sh
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| 48 | -----------------
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| 49 | - perform
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| 50 | . scan Irods directories to look at header fits files extraction progress
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| 51 |
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| 52 | o statusgain.sh
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| 53 | ---------------
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| 54 | - perform
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| 55 | . scan Irods directories to look at FINAL gain_* files production progress
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| 56 |
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| 57 | o statuscalib.sh
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| 58 | ----------------
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| 59 | - perform
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| 60 | . scan Irods directories to look at INTERMEDIATE calibcycle files production progress
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| 61 | - Todo
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| 62 | . scan also for FINAL calib_* files progress
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| 63 | o statusonoff.sh
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| 64 | ----------------
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| 65 | - perform
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| 66 | . scan Irods On and Off directories to look at datacycle<cycle> contents
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| 67 |
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| 68 | o statusCycles.sh
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| 69 | -----------------
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| 70 | - perform
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| 71 | . scan Irods directories to look at sca<>.sum files to count the number of cycles per run
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| 72 |
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| 73 | B) Utilitary scripts to send to BQS system high level task
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| 74 | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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| 75 | o submit2bqs-hdrfitsextractor.sh
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| 76 | --------------------------------
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| 77 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 78 | - send the hdrfitsextractor.sh script to BQS system
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| 79 | - Todo list
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| 80 | - TO MIGRATE TO NEW BATCH
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| 81 |
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| 82 | o submit2bqs-scaextractor.sh
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| 83 | --------------------------------
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| 84 | - SHOULD BE DONE BEFORE gain/calib/analysis
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| 85 | - send the scaextractor.sh script to BQS system
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| 86 | although this script is called by getscafiles lower level script
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| 87 | - Todo list
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| 88 | - TO MIGRATE TO NEW BATCH
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| 89 |
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| 90 | o submit2bqs-procspecmfib.sh
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| 91 | -----------------------------
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| 92 | - SHOULD BE DONE for processing signals for FFT/paquet median filtering
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| 93 | - GAIN/CALIB/ON, OFF...
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| 94 | - prepare and send in batch the proc_specmfib.sh to BQS
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| 95 | - exemple
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| 96 | ./submit2bqs-procspecmfib.sh -src Abell85 -date 20110422 -type CALIBOFF -fcycle 8 -lcycle 14
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| 97 | - Todo list
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| 98 | - TO MIGRATE TO NEW BATCH
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| 99 |
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| 100 | o submit2bqs-anagainmaker.sh
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| 101 | ----------------------------
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| 102 | - done after proc_specmfib
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| 103 | - prepare and send the analyse.cc prg for gain computation
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| 104 | - exemple
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| 105 | - Todo list
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| 106 | - TO MIGRATE TO NEW BATCH
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| 107 |
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| 108 | o submit2bqs-anacalibmaker.sh
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| 109 | ----------------------------
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| 110 | - done after proc_specmfib
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| 111 | - prepare and send the analyse.cc prg for calibration computation
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| 112 | - exemples:
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| 113 | > $./submit2bqs-anacalibmaker.sh -src Abell85 -date 20110410
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| 114 |
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| 115 |
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| 116 | - Todo list
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| 117 | - TO MIGRATE TO NEW BATCH
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| 118 |
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| 119 | o submit2qs-onoffmaker.sh (OBSOLETE ???)
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| 120 | --------------------------
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| 121 | - send the onoffmaker.sh script to BQS system
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| 122 | - Todo list
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| 123 | - TO MIGRATE TO NEW BATCH
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| 124 |
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| 125 | o submit2bqs-rawonoffmaker.sh (OBSOLETE ???)
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| 126 | -----------------------------
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| 127 | - used after the anagainmaker
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| 128 | - prepare and send in batch the proc_rawonoff.sh to BQS system
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| 129 | - exemple submit2bqs-rawonoffmaker.sh -src Abell85 -date 20110417 -fcycle 8 -lcycle 23 -type ON
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| 130 | - Todo list
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| 131 | - TO MIGRATE TO NEW BATCH
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| 132 |
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| 133 | o submit2qs-gainmaker.sh (OBSOLETE)
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| 134 | -------------------------
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| 135 | - send the gainmaker.sh script to BQS system
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| 136 | - Todo list
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| 137 | - TO MIGRATE TO NEW BATCH
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| 138 |
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| 139 | o submit2qs-calibmaker.sh (OBSOLETE)
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| 140 | --------------------------
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| 141 | - send the calibmaker.sh script to BQS system
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| 142 | - Todo list
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| 143 | - TO MIGRATE TO NEW BATCH
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| 144 |
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| 145 |
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| 146 | C) High level scripts
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| 147 | ++++++++++++++++++++++
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| 148 | o hdrfitsextractor.sh
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| 149 | ---------------------
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| 150 | - SHOULD BE DONE BEFORE ANYTHING
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| 151 | - perform
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| 152 | . extraction of the header part of the signalXYZ.fits files and
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| 153 | . put the results into Irods
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| 154 | - use
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| 155 | . statusdaq.sh
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| 156 |
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| 157 | o anagainmaker.sh
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| 158 | -----------------
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| 159 | - perform
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| 160 | . the analysis of the above fits files to determine the
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| 161 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 162 | . put the results into Irods
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| 163 | - use
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| 164 | - getscafiles.sh
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| 165 | - analysis.cc
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| 166 |
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| 167 | o anacalibmaker.sh
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| 168 | ------------------
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| 169 | - perfom
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| 170 | . prepare the analysis of the above fits files
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| 171 | . put calib_* files (monitoring + calibration files) into Irods
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| 172 | - use
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| 173 | - getscafiles.sh
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| 174 | - analysis.cc
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| 175 |
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| 176 |
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| 177 | o gainmaker.sh (OBOLETE)
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| 178 | ---------------
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| 179 | - perform
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| 180 | 1) the extraction of signalXYZ.fits files
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| 181 | concerned by the OFF-calibration time window
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| 182 | of the cycle located at the middle of the run
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| 183 | 2) . the analysis of the above fits files to determine the
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| 184 | gains of each channel: produce gain_* files (monitoring + gain files)
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| 185 | . put the results into Irods
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| 186 | - use
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| 187 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 188 | - analysis.cc
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| 189 |
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| 190 | o calibmaker.sh (OBSOLETE)
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| 191 | ---------------
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| 192 | - perfom
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| 193 | 1) several x-checks to see at which stage of the analysis process we are
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| 194 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 195 | 3) . prepare the analysis of the above fits files
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| 196 | . put calib_* files (monitoring + calibration files) into Irods
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| 197 | - use
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| 198 | - statusdaq.sh, proc_script.sh, getscafiles.sh
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| 199 | - analysis.cc
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| 200 |
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| 201 | o onoffmaker.sh (preliminary)
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| 202 | ----------------------------
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| 203 | - perform
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| 204 | 1) several x-checks to see at which stage of the analysis process we are
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| 205 | 2) trig the proc_script.sh script if necessary to create the spectra fits files via specmfib.cc prg
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| 206 | 3) prepare the analysis of the above fits files
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| 207 | 4) put dataRaw_* (raw spectra),
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| 208 | dataBAOCalib_* (after BAO calibration),
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| 209 | dataBAORTCalib_* (after BAO & RT calibration),
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| 210 | diffOnOff_* (ON-OFF spectra)
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| 211 |
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| 212 | D) Lower level scripts
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| 213 | ++++++++++++++++++++++
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| 214 |
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| 215 | o proc_specmfib.sh
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| 216 | ------------------
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| 217 | - perform all the preparation work to send in batch the "specmfib"
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| 218 | program which perform the FFT and median/mean spectra
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| 219 | for the GAIN/CALIB/ON-OFF... task
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| 220 | - use
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| 221 | - getscafiles.sh, select.sh, statusdaq.sh, getsignalfiles.sh
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| 222 | - comments
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| 223 | - this is the pre-processing of the data to be used before
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| 224 | anaXYZ script which are post-processing
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| 225 |
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| 226 |
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| 227 | o proc_rawonoff.sh (OBSOLETE)
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| 228 | ------------------
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| 229 | - this is the script to use to perform the "datacycle" contents
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| 230 | - perform all the preparation work to send in batch the "specmfib" program
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| 231 | which perform the FFT and median/mean spectra for the ON-OFF task
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| 232 | - use
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| 233 | - getscafiles.sh, select.sh, statusdaq.sh, getsignalfiles.sh
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| 234 | - comments
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| 235 | - contrary to proc_script (below) specmfib is activated in the same thread
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| 236 |
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| 237 | o proc_script.sh (OBSOLETE)
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| 238 | -----------------
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| 239 | - VERY BUSY script
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| 240 | - perform
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| 241 | 1) all the preparation work to send in batch the "specmfib" program
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| 242 | which perform the FFT and median/mean spectra for GAIN, CALIBRATION, ON-OFF task
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| 243 | 2) the script that is sent in batch put the results into Irods
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| 244 | - use
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| 245 | - getscafiles.sh, select.sh, getsignalfiles.sh
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| 246 | - Todo list
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| 247 | - TO MIGRATE TO NEW BATCH
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| 248 |
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| 249 |
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| 250 | o scaextractor.sh
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| 251 | -----------------
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| 252 | - perform
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| 253 | 1) extraction of the scaXYZ file
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| 254 | 2) if the scaXYZ.sum and the scaXYZ.sum.trans files do not exist
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| 255 | . create and put them into Irods
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| 256 | . scaXYZ.sum = summary of the SCA file
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| 257 | . scaXYZ.sum.trans = transformation of the date format of the scaXYZ.sum file
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| 258 | - use
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| 259 | - sca.sh, transdate.sh
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| 260 |
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| 261 | o sca.sh
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| 262 | --------
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| 263 | - perform
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| 264 | . produce the scaXYZ.sum (= summary of the SCA file) from a scaXYZ file
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| 265 |
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| 266 | o transdate.sh
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| 267 | --------------
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| 268 | - perform
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| 269 | . produce the scaXYZ.sum.trans (= transformation of the date format) from the scaXYZ.sum file
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| 270 |
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| 271 | o select.sh
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| 272 | -----------
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| 273 | -perform
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| 274 | . the selection of the signalXYZ.fits files according to the type of task requested
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| 275 | as ON, OFF, CALIBON, CALIBOFF, GAIN
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| 276 |
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| 277 | o getscafiles.sh
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| 278 | ----------------
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| 279 | - perform
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| 280 | . download from Irods the scaXYZ, scaXYZ.sum and scaXYZ.sum.trans files
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| 281 | - use
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| 282 | scaextractor.sh
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| 283 |
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| 284 | o getsignals.sh
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| 285 | ---------------
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| 286 | - perform
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| 287 | . download from Irods the signalXYZ.fits files
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| 288 |
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| 289 |
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| 290 |
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| 291 |
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