1 | #!/bin/sh |
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2 | # |
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3 | #Script sh d'extraction de fichiers d'irod |
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4 | # Auteur: JE Campagne (LAL Orsay) |
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5 | # Creation: 2 mai 2011 |
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6 | # adaptation pour le CC 17 juin 2011 |
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7 | DATE=/bin/date |
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8 | GREP=/bin/grep |
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9 | AWK=/bin/awk |
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10 | ECHO=/bin/echo |
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11 | TR=/usr/bin/tr |
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12 | MKDIR=/bin/mkdir |
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13 | CAT=/bin/cat |
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14 | RM=/bin/rm |
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15 | LS=/bin/ls |
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16 | DefaultIFS=$' \t\n' |
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17 | IFS=$DefaultIFS |
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18 | |
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19 | scriptName="`basename $0`" |
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20 | $ECHO "Processing script ${scriptName} at `date`" |
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21 | |
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22 | |
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23 | |
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24 | if [ ! $# = 4 ]; then |
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25 | $ECHO "usage: ${scriptName} <source:ex. Abell85> <date:YYYYMMDD> first last" |
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26 | #JEC 29/9/11 avoid finished stuff |
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27 | # touch ${tmppublicpath}/getsignalfiles.finished |
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28 | exit 0 |
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29 | fi |
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30 | |
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31 | # Irods environment settings |
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32 | #export PATH=$PATH:/home/bao/irods2.5_LinuxSL5 |
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33 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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34 | |
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35 | sourceRadio=$1 |
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36 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" ` |
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37 | dateDAQ=$2 |
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38 | |
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39 | #Path to public backupable path |
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40 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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41 | |
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42 | #temporary files to synchronize scripts |
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43 | tmppublicpath=${TMPPUBLICPATH} |
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44 | $LS -l ${tmppublicpath} > /dev/null |
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45 | |
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46 | |
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47 | #Path where the job will do temporary IO |
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48 | if [ ${ENVIRONMENT} == "INTERACTIVE" ]; then |
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49 | iojobpath="/sps/baoradio/AmasNancay/JEC" |
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50 | $MKDIR -p $iojobpath |
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51 | elif [ ${ENVIRONMENT} == "BATCH" ] ; then |
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52 | iojobpath=${TMPBATCH} |
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53 | else |
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54 | $ECHO "FATAL (${scriptName}): environment is ${ENVIRONMENT} not allowed" |
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55 | #JEC 29/9/11 avoid finished stuff |
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56 | # touch ${tmppublicpath}/getsignalfiles.finished |
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57 | exit 1 |
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58 | fi |
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59 | cd ${iojobpath} |
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60 | |
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61 | localpath="${sourceRadio}/${dateDAQ}${srclower}" |
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62 | $MKDIR -p ./${localpath} |
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63 | cd ./${localpath} |
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64 | |
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65 | #Path of the utility scripts |
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66 | scriptpath=${SCRIPTPATH} |
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67 | |
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68 | |
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69 | #determine the sequence of signal files to download |
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70 | #JEC 1/10/11 Use generic baodaqstatus name |
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71 | #get the daq current irod status |
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72 | #tag=`${DATE} +%F` |
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73 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt |
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74 | OUT1=${publicpath}/baodaqstatus-current.txt |
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75 | |
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76 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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77 | # $ECHO "We should bring the DAQ status more up to date, this take few |
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78 | # sec..." |
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79 | # $RM -f ${tmppublicpath}/statusdaq.finished |
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80 | # ${scriptpath}/statusdaq.sh > ${OUT1} |
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81 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do |
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82 | # $ECHO "INFO (${scriptName}); waiting for ${tmppublicpath}/statusdaq.finished" |
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83 | # date +%T |
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84 | # sleep 30 |
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85 | # done |
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86 | # $RM ${tmppublicpath}/statusdaq.finished |
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87 | $ECHO "FATAL (${scriptName}): ${OUT1} is missing or not readable..." |
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88 | #JEC 29/9/11 avoid finished stuff |
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89 | # touch ${tmppublicpath}/getsignalfiles.finished |
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90 | exit 1 |
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91 | fi |
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92 | |
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93 | nfiles=`${GREP} "${sourceRadio}.*${dateDAQ}" ${OUT1} | ${AWK} '(NF==4){print $4}'` |
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94 | if [ "<${nfiles}>" == "<>" ]; then |
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95 | $ECHO "FATAL (${scriptName}): No run found for <${sourceRadio}> and date <${dateDAQ}>" |
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96 | $CAT $OUT1 |
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97 | #JEC 29/9/11 avoid finished stuff |
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98 | # touch ${tmppublicpath}/getsignalfiles.finished |
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99 | exit 1 |
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100 | fi |
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101 | |
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102 | |
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103 | firstFile=$3 |
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104 | if [ ${firstFile} -gt ${nfiles} ]; then |
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105 | $ECHO "FATAL (${scriptName}): ${firstFile} > ${nfiles}" |
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106 | #JEC 29/9/11 avoid finished stuff |
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107 | # touch ${tmppublicpath}/getsignalfiles.finished |
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108 | exit 1 |
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109 | fi |
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110 | |
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111 | |
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112 | lastFile=$4 |
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113 | if [ ${lastFile} -gt ${nfiles} ]; then |
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114 | $ECHO "FATAL (${scriptName}): ${lastFile} > ${nfiles}" |
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115 | #JEC 29/9/11 avoid finished stuff |
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116 | # touch ${tmppublicpath}/getsignalfiles.finished |
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117 | exit 1 |
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118 | fi |
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119 | |
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120 | if [ ${firstFile} -gt ${lastFile} ]; then |
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121 | $ECHO "FATAL (${scriptName}): ${firstFile} > ${lastFile}" |
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122 | #JEC 29/9/11 avoid finished stuff |
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123 | # touch ${tmppublicpath}/getsignalfiles.finished |
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124 | exit 1 |
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125 | fi |
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126 | |
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127 | |
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128 | dirIrod="/baoradio/data/AmasNancay/${sourceRadio}/${dateDAQ}${srclower}" |
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129 | dirLocal="." |
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130 | |
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131 | ##$ECHO "Ready to download [${firstFile},${lastFile}] in $dirLocal from $dirIrod" |
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132 | #Nb we are in the localpath |
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133 | $MKDIR -p Fiber1 |
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134 | $MKDIR -p Fiber2 |
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135 | |
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136 | OUT2=./igetStatus.$$ |
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137 | |
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138 | n=$firstFile |
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139 | while [[ $n -le $lastFile ]]; do |
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140 | iget -r -f -v -K ${dirIrod}/Fiber1/signal$n.fits ${dirLocal}/Fiber1 >${OUT2} 2>&1 |
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141 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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142 | if [ "<$igetStatus>" != "<>" ]; then |
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143 | $ECHO "FATAL (${scriptName}): error while iget:" |
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144 | $ECHO $igetStatus |
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145 | #JEC 29/9/11 avoid finished stuff |
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146 | # touch ${tmppublicpath}/getsignalfiles.finished |
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147 | exit 1 |
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148 | fi |
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149 | iget -r -f -v -K ${dirIrod}/Fiber2/signal$n.fits ${dirLocal}/Fiber2 >${OUT2} 2>&1 |
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150 | igetStatus=`$GREP "^ERROR" ${OUT2}` |
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151 | if [ "<$igetStatus>" != "<>" ]; then |
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152 | $ECHO "FATAL (${scriptName}): error while iget:" |
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153 | $ECHO $igetStatus |
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154 | #JEC 29/9/11 avoid finished stuff |
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155 | # touch ${tmppublicpath}/getsignalfiles.finished |
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156 | exit 1 |
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157 | fi |
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158 | n=$(($n+1)) |
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159 | done |
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160 | |
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161 | #JEC 29/9/11 avoid finished stuff |
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162 | #touch ${tmppublicpath}/getsignalfiles.finished |
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163 | exit 0 |
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