1 | // Utilisation de SOPHYA pour faciliter les tests ... |
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2 | #include "sopnamsp.h" |
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3 | #include "machdefs.h" |
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4 | #include <dirent.h> |
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5 | #include <matharr.h> |
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6 | |
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7 | // include standard c/c++ |
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8 | #include <regex.h> |
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9 | #include <stdio.h> |
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10 | #include <stdlib.h> |
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11 | #include <limits> |
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12 | #include <iostream> |
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13 | #include <fstream> |
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14 | #include <string> |
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15 | #include <vector> |
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16 | #include <map> |
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17 | #include <functional> |
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18 | #include <algorithm> |
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19 | #include <numeric> |
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20 | #include <list> |
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21 | #include <exception> |
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22 | |
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23 | // include sophya mesure ressource CPU/memoire ... |
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24 | #include "resusage.h" |
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25 | #include "ctimer.h" |
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26 | #include "timing.h" |
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27 | #include "timestamp.h" |
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28 | #include "strutilxx.h" |
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29 | #include "ntuple.h" |
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30 | #include "fioarr.h" |
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31 | #include "tarrinit.h" |
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32 | #include "histinit.h" |
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33 | #include "fitsioserver.h" |
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34 | #include "fiosinit.h" |
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35 | #include "ppersist.h" |
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36 | |
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37 | //----------------------------------------------- |
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38 | //Usage |
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39 | // |
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40 | //./Objs/mergeAnaFiles -act meanCalibBAODiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src Abell85 -ppfFile dataRaw -debug 1 -mxcycles 500 |
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41 | //./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log |
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42 | // |
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43 | // |
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44 | //----------------------------------------------- |
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45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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49 | //Input parameters |
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50 | struct Param { |
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51 | int debuglev_; //debug |
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52 | string inPath_; //root directory of the input files |
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53 | string outPath_; //output files are located here |
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54 | string sourceName_; //source name & subdirectory of the input files |
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55 | string ppfFile_; //generic name of the input files |
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56 | int nSliceInFreq_; //used by reduceSpectra() fnc |
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57 | string calibFreq_; //freq. value used for calibration |
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58 | r_4 rcalibFreq_; //float version |
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59 | string calibBandFreq_; //band of freq. used for calibration |
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60 | r_4 rcalibBandFreq_; //float version |
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61 | int maxNumberCycles_;//maximum number of cycles to be treated |
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62 | } para; |
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63 | //-------------------------------------------------------------- |
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64 | //Utility functions |
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65 | |
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66 | sa_size_t freqToChan(r_4 f){ |
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67 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
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68 | } |
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69 | //-------- |
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70 | //COMPUTE the mean value on a freq. range for all channels |
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71 | //-------- |
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72 | void meanInRange(const TMatrix<r_4> mtx, |
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73 | sa_size_t chLow, |
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74 | sa_size_t chHigh, |
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75 | TVector<r_4>& vec){ |
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76 | |
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77 | sa_size_t nr = mtx.NRows(); |
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78 | |
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79 | for (sa_size_t ir=0; ir<nr; ir++){ |
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80 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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81 | double mean, sigma; |
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82 | MeanSigma(tmp,mean,sigma); |
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83 | vec(ir) = mean; |
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84 | } |
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85 | } |
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86 | //--------- |
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87 | class median_of_empty_list_exception:public std::exception{ |
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88 | virtual const char* what() const throw() { |
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89 | return "Attempt to take the median of an empty list of numbers. " |
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90 | "The median of an empty list is undefined."; |
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91 | } |
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92 | }; |
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93 | template<class RandAccessIter> |
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94 | double median(RandAccessIter begin, RandAccessIter end) |
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95 | throw(median_of_empty_list_exception){ |
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96 | if(begin == end){ throw median_of_empty_list_exception(); } |
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97 | std::size_t size = end - begin; |
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98 | std::size_t middleIdx = size/2; |
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99 | RandAccessIter target = begin + middleIdx; |
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100 | std::nth_element(begin, target, end); |
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101 | |
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102 | if(size % 2 != 0){ //Odd number of elements |
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103 | return *target; |
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104 | }else{ //Even number of elements |
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105 | double a = *target; |
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106 | RandAccessIter targetNeighbor= target-1; |
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107 | std::nth_element(begin, targetNeighbor, end); |
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108 | return (a+*targetNeighbor)/2.0; |
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109 | } |
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110 | } |
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111 | |
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112 | //------------- |
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113 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
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114 | // Skip delimiters at beginning. |
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115 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
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116 | // Find first "non-delimiter". |
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117 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
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118 | |
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119 | while (string::npos != pos || string::npos != lastPos) |
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120 | { |
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121 | // Found a token, add it to the vector. |
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122 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
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123 | // Skip delimiters. Note the "not_of" |
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124 | lastPos = str.find_first_not_of(delimiters, pos); |
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125 | // Find next "non-delimiter" |
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126 | pos = str.find_first_of(delimiters, lastPos); |
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127 | } |
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128 | } |
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129 | //-------------------------------------------------------------- |
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130 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
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131 | int i, w=0, len; |
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132 | char *word = NULL; |
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133 | regex_t rgT; |
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134 | regmatch_t match; |
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135 | regcomp(&rgT,patrn,REG_EXTENDED); |
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136 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
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137 | *begin = (int)match.rm_so; |
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138 | *end = (int)match.rm_eo; |
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139 | len = *end-*begin; |
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140 | word=(char*)malloc(len+1); |
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141 | for (i=*begin; i<*end; i++) { |
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142 | word[w] = string[i]; |
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143 | w++; } |
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144 | word[w]=0; |
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145 | } |
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146 | regfree(&rgT); |
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147 | return word; |
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148 | } |
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149 | //------- |
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150 | sa_size_t round_sa(r_4 r) { |
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151 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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152 | } |
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153 | //----- |
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154 | string StringToLower(string strToConvert){ |
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155 | //change each element of the string to lower case |
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156 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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157 | strToConvert[i] = tolower(strToConvert[i]); |
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158 | } |
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159 | return strToConvert;//return the converted string |
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160 | } |
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161 | //----- |
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162 | bool stringCompare( const string &left, const string &right ){ |
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163 | if( left.size() < right.size() ) |
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164 | return true; |
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165 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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166 | if( tolower( *lit ) < tolower( *rit ) ) |
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167 | return true; |
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168 | else if( tolower( *lit ) > tolower( *rit ) ) |
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169 | return false; |
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170 | return false; |
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171 | } |
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172 | //----- |
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173 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
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174 | list<string> theList; |
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175 | |
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176 | |
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177 | DIR *dip; |
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178 | struct dirent *dit; |
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179 | string msg; string fileName; |
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180 | string fullFileName; |
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181 | size_t found; |
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182 | |
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183 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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184 | msg = "opendir failed on directory "+dir; |
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185 | throw msg; |
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186 | } |
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187 | while ( (dit = readdir(dip)) != NULL ) { |
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188 | fileName = dit->d_name; |
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189 | found=fileName.find(filePettern); |
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190 | if (found != string::npos) { |
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191 | fullFileName = dir + "/"; |
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192 | fullFileName += fileName; |
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193 | theList.push_back(fullFileName); |
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194 | } |
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195 | }//eo while |
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196 | if (closedir(dip) == -1) { |
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197 | msg = "closedir failed on directory "+dir; |
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198 | throw msg; |
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199 | } |
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200 | |
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201 | theList.sort(stringCompare); |
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202 | |
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203 | return theList; |
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204 | |
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205 | } |
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206 | // |
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207 | class StringMatch : public unary_function<string,bool> { |
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208 | public: |
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209 | StringMatch(const string& pattern): pattern_(pattern){} |
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210 | bool operator()(const string& aStr) const { |
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211 | |
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212 | |
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213 | int b,e; |
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214 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
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215 | |
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216 | // cout << "investigate " << aStr << " to find " << pattern_ |
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217 | // << "[" <<b<<","<<e<<"]" |
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218 | // << endl; |
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219 | |
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220 | |
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221 | if (b != 0) return false; |
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222 | if (e != (int)aStr.size()) return false; |
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223 | return true; |
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224 | |
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225 | } |
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226 | private: |
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227 | string pattern_; |
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228 | }; |
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229 | //------------------------------------------------------- |
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230 | //Rebin in frequence + compute mean and sigma |
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231 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
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232 | TMatrix<r_4>& meanMtx, |
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233 | TMatrix<r_4>& sigmaMtx) { |
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234 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
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235 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
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236 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
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237 | sa_size_t freqLow= iSlice*deltaFreq; |
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238 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
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239 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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240 | TVector<r_4> reducedRow; |
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241 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
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242 | double mean; |
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243 | double sigma; |
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244 | MeanSigma(reducedRow,mean,sigma); |
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245 | meanMtx(iCh,iSlice) = mean; |
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246 | sigmaMtx(iCh,iSlice) = sigma; |
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247 | }//eo loop on channels |
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248 | }//eo loop on slices |
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249 | } |
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250 | //------------------------------------------------------- |
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251 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
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252 | // |
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253 | void meanCalibBAODiffOnOffCycles() throw(string) { |
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254 | |
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255 | list<string> listOfFiles; |
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256 | string directoryName; |
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257 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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258 | |
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259 | //Make the listing of the directory |
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260 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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261 | |
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262 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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263 | iFileEnd = listOfFiles.end(); |
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264 | |
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265 | //mean ON-OFF over the list of cycles |
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266 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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267 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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268 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
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269 | static const int NINFO=19; |
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270 | char* onffTupleName[NINFO]={"cycle" |
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271 | ,"onoffRaw0","onoffRaw1" |
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272 | ,"onoffRun0","onoffRun1" |
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273 | ,"onoffCycle0","onoffCycle1" |
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274 | ,"onoffRaw01420","onoffRaw11420" |
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275 | ,"onoffRun01420","onoffRun11420" |
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276 | ,"onoffCycle01420","onoffCycle11420" |
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277 | ,"onoffRaw01420side","onoffRaw11420side" |
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278 | ,"onoffRun01420side","onoffRun11420side" |
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279 | ,"onoffCycle01420side","onoffCycle11420side" |
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280 | }; |
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281 | NTuple onoffevolution(NINFO,onffTupleName); |
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282 | r_4 xnt[NINFO]; |
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283 | |
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284 | //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up |
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285 | sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
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286 | sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
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287 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
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288 | sa_size_t ch1420Low = freqToChan(1420); |
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289 | sa_size_t ch1420High = freqToChan(1421); |
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290 | |
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291 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
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292 | sa_size_t ch1420aLow = freqToChan(1418); |
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293 | sa_size_t ch1420aHigh = freqToChan(1419); |
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294 | sa_size_t ch1420bLow = freqToChan(1422); |
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295 | sa_size_t ch1420bHigh = freqToChan(1423); |
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296 | |
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297 | |
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298 | if (para.debuglev_>90){ |
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299 | cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl; |
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300 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
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301 | } |
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302 | |
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303 | //Loop on files/run |
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304 | |
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305 | int totalNumberCycles=0; //total number of cycles for normalisation |
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306 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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307 | if (para.debuglev_>90){ |
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308 | cout << "load file <" << *iFile << ">" << endl; |
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309 | } |
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310 | |
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311 | vector<string> tokens; |
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312 | split(*iFile,"_",tokens); |
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313 | string dateOfRun = tokens[1]; |
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314 | if (para.debuglev_>90){ |
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315 | cout << "date <" << dateOfRun << ">" << endl; |
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316 | } |
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317 | vector<string> tokens2; |
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318 | split(tokens[2],".",tokens2); |
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319 | string srcLower = tokens2[0]; |
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320 | |
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321 | |
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322 | |
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323 | PInPersist fin(*iFile); |
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324 | vector<string> vec = fin.GetNameTags(); |
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325 | |
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326 | vector<string> modeList; |
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327 | modeList.push_back("On"); |
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328 | modeList.push_back("Off"); |
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329 | vector<string>::const_iterator iMode; |
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330 | |
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331 | map<string, list<int> > cycleModeCollect; |
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332 | |
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333 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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334 | list<string> listOfSpectra; |
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335 | //Keep only required PPF objects |
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336 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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337 | std::remove_copy_if( |
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338 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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339 | not1(StringMatch(matchstr)) |
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340 | ); |
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341 | |
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342 | listOfSpectra.sort(stringCompare); |
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343 | iSpecEnd = listOfSpectra.end(); |
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344 | |
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345 | matchstr = "[0-9]+"; |
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346 | //Loop of spectra matrix |
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347 | list<int> listOfCycles; |
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348 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
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349 | int b,e; |
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350 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
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351 | if (para.debuglev_>90){ |
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352 | cout << " spactra <" << *iSpec << ">" << endl; |
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353 | cout << " cycle " << iSpec->substr(b) << endl; |
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354 | } |
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355 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
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356 | }//end loop spectra |
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357 | cycleModeCollect[*iMode] = listOfCycles; |
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358 | }//end of mode |
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359 | |
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360 | //Take the Intersection of the list Of cycles in mode Off and On |
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361 | list<int> commonCycles; |
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362 | set_intersection(cycleModeCollect["On"].begin(), |
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363 | cycleModeCollect["On"].end(), |
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364 | cycleModeCollect["Off"].begin(), |
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365 | cycleModeCollect["Off"].end(), |
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366 | back_inserter(commonCycles) |
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367 | ); |
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368 | |
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369 | if (para.debuglev_>90){ |
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370 | cout << "Liste of cycles common to On & Off: <"; |
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371 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
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372 | cout << *i << " "; |
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373 | } |
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374 | cout << ">" << endl; |
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375 | } |
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376 | |
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377 | // |
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378 | //Load BAO Calibration factors "per Cycle and Channels" |
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379 | //Compute the mean per Cycle to |
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380 | // fill factors "per Run and Channels" with the same cycle list |
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381 | // |
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382 | // |
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383 | //TODO improve the code.... |
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384 | |
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385 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
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386 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
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387 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
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388 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
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389 | |
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390 | string calibFileName; |
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391 | ifstream ifs; |
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392 | sa_size_t nr,nc; //values read |
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393 | |
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394 | //OFF Cycle per Channel |
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395 | calibFileName = directoryName + "/" |
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396 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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397 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
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398 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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399 | ifs.open(calibFileName.c_str()); |
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400 | if ( ! ifs.is_open() ) { |
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401 | |
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402 | throw calibFileName + " cannot be opened..."; |
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403 | } |
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404 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
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405 | if(para.debuglev_>9){ |
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406 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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407 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
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408 | cout << endl; |
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409 | } |
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410 | |
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411 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
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412 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
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413 | {//Compute the mean |
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414 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
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415 | double mean,sigma; |
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416 | MeanSigma(coef,mean,sigma); |
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417 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
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418 | } |
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419 | if(para.debuglev_>9){ |
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420 | cout << "Fill calib. with mean value " << endl; |
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421 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
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422 | cout << endl; |
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423 | } |
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424 | ifs.close(); |
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425 | |
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426 | // |
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427 | calibFileName = directoryName + "/" |
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428 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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429 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
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430 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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431 | ifs.open(calibFileName.c_str()); |
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432 | if ( ! ifs.is_open() ) { |
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433 | |
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434 | throw calibFileName + " cannot be opened..."; |
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435 | } |
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436 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
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437 | if(para.debuglev_>9){ |
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438 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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439 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
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440 | cout << endl; |
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441 | } |
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442 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
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443 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
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444 | {//Compute the mean |
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445 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
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446 | double mean,sigma; |
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447 | MeanSigma(coef,mean,sigma); |
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448 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
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449 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
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450 | } |
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451 | if(para.debuglev_>9){ |
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452 | cout << "Fill calib. with mean value " << endl; |
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453 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
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454 | cout << endl; |
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455 | } |
---|
456 | ifs.close(); |
---|
457 | |
---|
458 | //ON Cycle per Channel |
---|
459 | calibFileName = directoryName + "/" |
---|
460 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
461 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
462 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
463 | ifs.open(calibFileName.c_str()); |
---|
464 | if ( ! ifs.is_open() ) { |
---|
465 | |
---|
466 | throw calibFileName + " cannot be opened..."; |
---|
467 | } |
---|
468 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
469 | if(para.debuglev_>9){ |
---|
470 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
471 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
472 | cout << endl; |
---|
473 | } |
---|
474 | |
---|
475 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
476 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
477 | {//Compute the mean |
---|
478 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
479 | double mean,sigma; |
---|
480 | MeanSigma(coef,mean,sigma); |
---|
481 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
482 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
483 | } |
---|
484 | if(para.debuglev_>9){ |
---|
485 | cout << "Fill calib. with mean value " << endl; |
---|
486 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
487 | cout << endl; |
---|
488 | } |
---|
489 | ifs.close(); |
---|
490 | |
---|
491 | |
---|
492 | calibFileName = directoryName + "/" |
---|
493 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
494 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
495 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
496 | ifs.open(calibFileName.c_str()); |
---|
497 | if ( ! ifs.is_open() ) { |
---|
498 | throw calibFileName + " cannot be opened..."; |
---|
499 | } |
---|
500 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
501 | if(para.debuglev_>9){ |
---|
502 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
503 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
504 | cout << endl; |
---|
505 | } |
---|
506 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
507 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
508 | {//Compute the mean |
---|
509 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
510 | double mean,sigma; |
---|
511 | MeanSigma(coef,mean,sigma); |
---|
512 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
513 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
514 | } |
---|
515 | if(para.debuglev_>9){ |
---|
516 | cout << "Fill calib. with mean value " << endl; |
---|
517 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
518 | cout << endl; |
---|
519 | } |
---|
520 | |
---|
521 | ifs.close(); |
---|
522 | |
---|
523 | //link <cycle> - <calibration coefficient> |
---|
524 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
525 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
526 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
527 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
528 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
529 | |
---|
530 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
531 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
532 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
533 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
534 | |
---|
535 | //per Run based BAO coefficients |
---|
536 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
537 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
538 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
539 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
540 | |
---|
541 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
542 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
543 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
544 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
545 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
546 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
547 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
548 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
549 | }//eo loop on coef Off |
---|
550 | |
---|
551 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
552 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
553 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
554 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
555 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
556 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
557 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
558 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
559 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
560 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
561 | }//eo loop on coef On |
---|
562 | |
---|
563 | //Loop on cyles |
---|
564 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
565 | |
---|
566 | //Look if the cycle has been calibrated... |
---|
567 | bool isCycleCalibrated = |
---|
568 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
569 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
570 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
571 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
572 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
573 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
574 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
575 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
576 | |
---|
577 | if(para.debuglev_>9) { |
---|
578 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
579 | if (isCycleCalibrated) { |
---|
580 | cout << "Cycle calibrated " << endl; |
---|
581 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
582 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
583 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
584 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
585 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
586 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
587 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
588 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
589 | } else { |
---|
590 | cout << "Cycle NOT calibrated " << endl; |
---|
591 | } |
---|
592 | }//debug |
---|
593 | |
---|
594 | |
---|
595 | if ( ! isCycleCalibrated ) continue; |
---|
596 | |
---|
597 | string ppftag; |
---|
598 | //load ON phase |
---|
599 | stringstream cycle; |
---|
600 | cycle << *ic; |
---|
601 | |
---|
602 | ppftag = "specRawOn"+cycle.str(); |
---|
603 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
604 | fin.GetObject(aSpecOn,ppftag); |
---|
605 | |
---|
606 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
607 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
608 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
609 | |
---|
610 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
611 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
612 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
613 | |
---|
614 | ppftag = "specRawOff"+cycle.str(); |
---|
615 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
616 | fin.GetObject(aSpecOff,ppftag); |
---|
617 | |
---|
618 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
619 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
620 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
621 | |
---|
622 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
623 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
624 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
625 | |
---|
626 | |
---|
627 | //Perform the difference ON-OFF with the different calibration options |
---|
628 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
629 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
630 | |
---|
631 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
632 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
633 | |
---|
634 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
635 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
636 | |
---|
637 | // |
---|
638 | totalNumberCycles++; |
---|
639 | //Fill NTuple |
---|
640 | xnt[0] = totalNumberCycles; |
---|
641 | |
---|
642 | //Follow up arround the Calibration Freq. |
---|
643 | TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
644 | meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib); |
---|
645 | xnt[1] = meanInRange_CalibFreq_noCalib(0); |
---|
646 | xnt[2] = meanInRange_CalibFreq_noCalib(1); |
---|
647 | |
---|
648 | TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
649 | meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib); |
---|
650 | xnt[3] = meanInRange_CalibFreq_perRunCalib(0); |
---|
651 | xnt[4] = meanInRange_CalibFreq_perRunCalib(1); |
---|
652 | |
---|
653 | TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
654 | meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib); |
---|
655 | xnt[5] = meanInRange_CalibFreq_perCycleCalib(0); |
---|
656 | xnt[6] = meanInRange_CalibFreq_perCycleCalib(1); |
---|
657 | |
---|
658 | |
---|
659 | //Follow up arround the 1420.4MHz Freq. |
---|
660 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
661 | meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
662 | xnt[7] = meanInRange_1420Freq_noCalib(0); |
---|
663 | xnt[8] = meanInRange_1420Freq_noCalib(1); |
---|
664 | |
---|
665 | TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
666 | meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib); |
---|
667 | xnt[9] = meanInRange_1420Freq_perRunCalib(0); |
---|
668 | xnt[10] = meanInRange_1420Freq_perRunCalib(1); |
---|
669 | |
---|
670 | TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
671 | meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib); |
---|
672 | xnt[11] = meanInRange_1420Freq_perCycleCalib(0); |
---|
673 | xnt[12] = meanInRange_1420Freq_perCycleCalib(1); |
---|
674 | |
---|
675 | |
---|
676 | //Follow up below the 1420.4MHz Freq. |
---|
677 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
678 | meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
679 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
680 | meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
681 | |
---|
682 | xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
683 | xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
684 | |
---|
685 | |
---|
686 | TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS); |
---|
687 | meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun); |
---|
688 | TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS); |
---|
689 | meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun); |
---|
690 | |
---|
691 | xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.; |
---|
692 | xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.; |
---|
693 | |
---|
694 | |
---|
695 | TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
696 | meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle); |
---|
697 | TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
698 | meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle); |
---|
699 | |
---|
700 | xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.; |
---|
701 | xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.; |
---|
702 | |
---|
703 | |
---|
704 | //store infos to Ntuple |
---|
705 | onoffevolution.Fill(xnt); |
---|
706 | |
---|
707 | //Quit if enough |
---|
708 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
709 | |
---|
710 | }//eo loop on cycles |
---|
711 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
712 | |
---|
713 | }//eo loop on spectra in a file |
---|
714 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
715 | //Normalisation |
---|
716 | if(totalNumberCycles > 0){ |
---|
717 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
718 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
719 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
720 | } |
---|
721 | |
---|
722 | //Compute the reduced version of the mean and sigma |
---|
723 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
724 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
725 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
726 | |
---|
727 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
728 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
729 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
730 | |
---|
731 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
732 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
733 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
734 | |
---|
735 | {//save the results |
---|
736 | stringstream tmp; |
---|
737 | tmp << totalNumberCycles; |
---|
738 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
739 | |
---|
740 | POutPersist fos(fileName); |
---|
741 | cout << "Save output in " << fileName << endl; |
---|
742 | |
---|
743 | string tag = "meanNoCalib"; |
---|
744 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
745 | tag = "meanPerRunCalib"; |
---|
746 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
747 | tag = "meanPerCycleCalib"; |
---|
748 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
749 | |
---|
750 | tag = "redmeanNoCalib"; |
---|
751 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
752 | tag = "redsigmaNoCalib"; |
---|
753 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
754 | |
---|
755 | tag = "redmeanPerRunCalib"; |
---|
756 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
757 | tag = "redsigmaPerRunCalib"; |
---|
758 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
759 | |
---|
760 | tag = "redmeanPerCycleCalib"; |
---|
761 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
762 | tag = "redsigmaPerCycleCalib"; |
---|
763 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
764 | |
---|
765 | tag = "onoffevol"; |
---|
766 | fos << PPFNameTag(tag) << onoffevolution; |
---|
767 | }//end of save |
---|
768 | } |
---|
769 | //------------------------------------------------------- |
---|
770 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
771 | //Used like: |
---|
772 | // |
---|
773 | void meanRawDiffOnOffCycles() throw(string) { |
---|
774 | list<string> listOfFiles; |
---|
775 | string directoryName; |
---|
776 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
777 | |
---|
778 | //Make the listing of the directory |
---|
779 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
780 | |
---|
781 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
782 | iFileEnd = listOfFiles.end(); |
---|
783 | |
---|
784 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
785 | TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
786 | uint_4 nSpectra=0; |
---|
787 | //Loop on files |
---|
788 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
789 | if (para.debuglev_>90){ |
---|
790 | cout << "load file <" << *iFile << ">" << endl; |
---|
791 | } |
---|
792 | PInPersist fin(*iFile); |
---|
793 | vector<string> vec = fin.GetNameTags(); |
---|
794 | list<string> listOfSpectra; |
---|
795 | //Keep only required PPF objects |
---|
796 | std::remove_copy_if( |
---|
797 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
798 | not1(match) |
---|
799 | ); |
---|
800 | |
---|
801 | listOfSpectra.sort(stringCompare); |
---|
802 | iSpecEnd = listOfSpectra.end(); |
---|
803 | //Loop of spectra matrix |
---|
804 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
805 | if (para.debuglev_>90){ |
---|
806 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
807 | } |
---|
808 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
809 | fin.GetObject(aSpec,*iSpec); |
---|
810 | //How to see if the GetObject is ok?? Ask Reza |
---|
811 | nSpectra++; |
---|
812 | meanOfSpectra+=aSpec; |
---|
813 | }//eo loop on spectra in a file |
---|
814 | }//eo loop on files |
---|
815 | |
---|
816 | //Normalisation |
---|
817 | if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
818 | |
---|
819 | //Compute the reduced version of the mean and sigma |
---|
820 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
821 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
822 | reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
823 | |
---|
824 | {//Save the result |
---|
825 | stringstream tmp; |
---|
826 | tmp << nSpectra; |
---|
827 | string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
828 | cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
829 | POutPersist fos(fileName); |
---|
830 | |
---|
831 | string tag = "mean"; |
---|
832 | fos << PPFNameTag(tag) << meanOfSpectra; |
---|
833 | tag = "meanred"; |
---|
834 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
835 | tag = "sigmared"; |
---|
836 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
837 | } |
---|
838 | } |
---|
839 | //------------------------------------------------------- |
---|
840 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
841 | //Used like: |
---|
842 | // |
---|
843 | void medianRawDiffOnOffCycles() throw(string) { |
---|
844 | list<string> listOfFiles; |
---|
845 | string directoryName; |
---|
846 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
847 | |
---|
848 | //Make the listing of the directory |
---|
849 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
850 | |
---|
851 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
852 | iFileEnd = listOfFiles.end(); |
---|
853 | |
---|
854 | |
---|
855 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
856 | |
---|
857 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
858 | uint_4 nSpectra=0; |
---|
859 | //Loop on files |
---|
860 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
861 | if (para.debuglev_>90){ |
---|
862 | cout << "load file <" << *iFile << ">" << endl; |
---|
863 | } |
---|
864 | PInPersist fin(*iFile); |
---|
865 | vector<string> vec = fin.GetNameTags(); |
---|
866 | list<string> listOfSpectra; |
---|
867 | //Keep only required PPF objects |
---|
868 | std::remove_copy_if( |
---|
869 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
870 | not1(match) |
---|
871 | ); |
---|
872 | |
---|
873 | listOfSpectra.sort(stringCompare); |
---|
874 | iSpecEnd = listOfSpectra.end(); |
---|
875 | //Loop of spectra matrix |
---|
876 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
877 | if (para.debuglev_>90){ |
---|
878 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
879 | } |
---|
880 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
881 | fin.GetObject(aSpec,*iSpec); |
---|
882 | |
---|
883 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
884 | |
---|
885 | nSpectra++; |
---|
886 | }//eo loop on spectra in a file |
---|
887 | }//eo loop on files |
---|
888 | |
---|
889 | |
---|
890 | |
---|
891 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
892 | //Compute the median for each freq. and Channel |
---|
893 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
894 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
895 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
896 | vector<r_4> tmp; |
---|
897 | tmp0.FillTo(tmp); |
---|
898 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
899 | } |
---|
900 | } |
---|
901 | |
---|
902 | |
---|
903 | //Compute the reduced version of the mean and sigma |
---|
904 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
905 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
906 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
907 | |
---|
908 | |
---|
909 | sa_size_t f1320=freqToChan(1320.); |
---|
910 | sa_size_t f1345=freqToChan(1345.); |
---|
911 | sa_size_t f1355=freqToChan(1355.); |
---|
912 | sa_size_t f1380=freqToChan(1380.); |
---|
913 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
914 | if (para.debuglev_>9){ |
---|
915 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
916 | } |
---|
917 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
918 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
919 | double meanMed1; |
---|
920 | double sigmaMed1; |
---|
921 | TVector<r_4> band1; |
---|
922 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
923 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
924 | double meanMed2; |
---|
925 | double sigmaMed2; |
---|
926 | TVector<r_4> band2; |
---|
927 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
928 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
929 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
930 | } |
---|
931 | meanMed.Print(cout); |
---|
932 | cout << endl; |
---|
933 | |
---|
934 | |
---|
935 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
936 | if (para.debuglev_>9){ |
---|
937 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
938 | } |
---|
939 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
940 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
941 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
942 | |
---|
943 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
944 | double meanSigma; |
---|
945 | double sigmaSigma; |
---|
946 | TVector<r_4> band; |
---|
947 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
948 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
949 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
950 | sigmaMed(iCh) = meanSigma; |
---|
951 | } |
---|
952 | sigmaMed.Print(cout); |
---|
953 | cout << endl; |
---|
954 | |
---|
955 | |
---|
956 | |
---|
957 | if (para.debuglev_>9){ |
---|
958 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
959 | } |
---|
960 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
961 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
962 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
963 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
964 | } |
---|
965 | |
---|
966 | |
---|
967 | |
---|
968 | {//Save the result |
---|
969 | stringstream tmp; |
---|
970 | tmp << nSpectra; |
---|
971 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
972 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
973 | POutPersist fos(fileName); |
---|
974 | |
---|
975 | string tag = "median"; |
---|
976 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
977 | |
---|
978 | tag = "medianNorm"; |
---|
979 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
980 | |
---|
981 | |
---|
982 | tag = "meanmedred"; |
---|
983 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
984 | tag = "sigmamedred"; |
---|
985 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
986 | tag = "cycleVsfreq"; |
---|
987 | |
---|
988 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
989 | fos << PPFNameTag(tag) << tarr; |
---|
990 | } |
---|
991 | } |
---|
992 | |
---|
993 | //------------------------------------------------------- |
---|
994 | int main(int narg, char* arg[]) { |
---|
995 | |
---|
996 | int rc = 0; //return code |
---|
997 | string msg; //message used in Exceptions |
---|
998 | |
---|
999 | |
---|
1000 | |
---|
1001 | //default value for initial parameters (see Para structure on top of the file) |
---|
1002 | string debuglev = "0"; |
---|
1003 | string action = "meanDiffOnOff"; |
---|
1004 | string inputPath = "."; |
---|
1005 | string outputPath = "."; |
---|
1006 | string sourceName = "Abell85"; |
---|
1007 | string ppfFile; |
---|
1008 | string nSliceInFreq = "32"; |
---|
1009 | string typeOfCalib="perRun"; |
---|
1010 | string calibFreq = "1346"; |
---|
1011 | string calibBandFreq="6.25"; |
---|
1012 | string mxcycles; |
---|
1013 | |
---|
1014 | // bool okarg=false; |
---|
1015 | int ka=1; |
---|
1016 | while (ka<narg) { |
---|
1017 | if (strcmp(arg[ka],"-h")==0) { |
---|
1018 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
1019 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
---|
1020 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
1021 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
1022 | << " -src [Abell85]\n" |
---|
1023 | << " -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
1024 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
1025 | << " -outPath [.]|<dir of the output> \n" |
---|
1026 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
1027 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
1028 | << " -debug <level> " |
---|
1029 | << endl; |
---|
1030 | return 0; |
---|
1031 | } |
---|
1032 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
1033 | debuglev=arg[ka+1]; |
---|
1034 | ka+=2; |
---|
1035 | } |
---|
1036 | else if (strcmp(arg[ka],"-act")==0) { |
---|
1037 | action=arg[ka+1]; |
---|
1038 | ka+=2; |
---|
1039 | } |
---|
1040 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
1041 | calibFreq=arg[ka+1]; |
---|
1042 | ka+=2; |
---|
1043 | } |
---|
1044 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
1045 | calibBandFreq=arg[ka+1]; |
---|
1046 | ka+=2; |
---|
1047 | } |
---|
1048 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
1049 | mxcycles=arg[ka+1]; |
---|
1050 | ka+=2; |
---|
1051 | } |
---|
1052 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
1053 | inputPath=arg[ka+1]; |
---|
1054 | ka+=2; |
---|
1055 | } |
---|
1056 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
1057 | outputPath=arg[ka+1]; |
---|
1058 | ka+=2; |
---|
1059 | } |
---|
1060 | else if (strcmp(arg[ka],"-src")==0) { |
---|
1061 | sourceName=arg[ka+1]; |
---|
1062 | ka+=2; |
---|
1063 | } |
---|
1064 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
1065 | ppfFile=arg[ka+1]; |
---|
1066 | ka+=2; |
---|
1067 | } |
---|
1068 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
1069 | nSliceInFreq=arg[ka+1]; |
---|
1070 | ka+=2; |
---|
1071 | } |
---|
1072 | else ka++; |
---|
1073 | }//eo while |
---|
1074 | |
---|
1075 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
1076 | para.inPath_ = inputPath; |
---|
1077 | para.outPath_ = outputPath; |
---|
1078 | para.sourceName_ = sourceName; |
---|
1079 | para.ppfFile_ = ppfFile; |
---|
1080 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
1081 | para.calibFreq_ = calibFreq; |
---|
1082 | para.calibBandFreq_ = calibBandFreq; |
---|
1083 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
1084 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
1085 | if (mxcycles != "") { |
---|
1086 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
1087 | } else { |
---|
1088 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
1089 | } |
---|
1090 | |
---|
1091 | cout << "Dump Initial parameters ............" << endl; |
---|
1092 | cout << " action = " << action << "\n" |
---|
1093 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
1094 | << " inputPath = " << para.inPath_ << "\n" |
---|
1095 | << " outputPath = " << para.outPath_ << "\n" |
---|
1096 | << " sourceName = " << para.sourceName_ << "\n" |
---|
1097 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
1098 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
1099 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
1100 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
1101 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
1102 | cout << "...................................." << endl; |
---|
1103 | |
---|
1104 | if ( "" == ppfFile ) { |
---|
1105 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
1106 | << endl; |
---|
1107 | return 999; |
---|
1108 | } |
---|
1109 | |
---|
1110 | |
---|
1111 | try { |
---|
1112 | |
---|
1113 | // int b,e; |
---|
1114 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
1115 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
1116 | |
---|
1117 | if ( action == "meanRawDiffOnOff" ) { |
---|
1118 | meanRawDiffOnOffCycles(); |
---|
1119 | } else if (action == "medianRawDiffOnOff") { |
---|
1120 | medianRawDiffOnOffCycles(); |
---|
1121 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
1122 | meanCalibBAODiffOnOffCycles(); |
---|
1123 | } else { |
---|
1124 | msg = "Unknown action " + action; |
---|
1125 | throw msg; |
---|
1126 | } |
---|
1127 | |
---|
1128 | |
---|
1129 | } catch (std::exception& sex) { |
---|
1130 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
1131 | << "\n msg= " << sex.what() << endl; |
---|
1132 | rc = 78; |
---|
1133 | } |
---|
1134 | catch ( string str ) { |
---|
1135 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
1136 | } |
---|
1137 | catch (...) { |
---|
1138 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
1139 | rc = 79; |
---|
1140 | } |
---|
1141 | |
---|
1142 | return 0; |
---|
1143 | |
---|
1144 | } |
---|