source: BAORadio/AmasNancay/v4/mergeAnaFiles.cc@ 654

Last change on this file since 654 was 577, checked in by campagne, 14 years ago

improve analysis (jec)
File size: 39.4 KB
Line 
1// Utilisation de SOPHYA pour faciliter les tests ...
2#include "sopnamsp.h"
3#include "machdefs.h"
4#include <dirent.h>
5#include <matharr.h>
6
7// include standard c/c++
8#include <regex.h>
9#include <stdio.h>
10#include <stdlib.h>
11#include <limits>
12#include <iostream>
13#include <fstream>
14#include <string>
15#include <vector>
16#include <map>
17#include <functional>
18#include <algorithm>
19#include <numeric>
20#include <list>
21#include <exception>
22
23// include sophya mesure ressource CPU/memoire ...
24#include "resusage.h"
25#include "ctimer.h"
26#include "timing.h"
27#include "timestamp.h"
28#include "strutilxx.h"
29#include "ntuple.h"
30#include "fioarr.h"
31#include "tarrinit.h"
32#include "histinit.h"
33#include "fitsioserver.h"
34#include "fiosinit.h"
35#include "ppersist.h"
36
37//-----------------------------------------------
38//Usage
39//
40//./Objs/mergeAnaFiles -act meanCalibBAODiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src Abell85 -ppfFile dataRaw -debug 1 -mxcycles 500
41//./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log
42//
43//
44//-----------------------------------------------
45const sa_size_t NUMBER_OF_CHANNELS = 2;
46const sa_size_t NUMBER_OF_FREQ = 8192;
47const r_4 LOWER_FREQUENCY = 1250.0; //MHz
48const r_4 TOTAL_BANDWIDTH = 250.0; //MHz
49//Input parameters
50struct Param {
51 int debuglev_; //debug
52 string inPath_; //root directory of the input files
53 string outPath_; //output files are located here
54 string sourceName_; //source name & subdirectory of the input files
55 string ppfFile_; //generic name of the input files
56 int nSliceInFreq_; //used by reduceSpectra() fnc
57 string calibFreq_; //freq. value used for calibration
58 r_4 rcalibFreq_; //float version
59 string calibBandFreq_; //band of freq. used for calibration
60 r_4 rcalibBandFreq_; //float version
61 int maxNumberCycles_;//maximum number of cycles to be treated
62} para;
63//--------------------------------------------------------------
64//Utility functions
65
66sa_size_t freqToChan(r_4 f){
67 return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ);
68}
69//--------
70//COMPUTE the mean value on a freq. range for all channels
71//--------
72void meanInRange(const TMatrix<r_4> mtx,
73 sa_size_t chLow,
74 sa_size_t chHigh,
75 TVector<r_4>& vec){
76
77 sa_size_t nr = mtx.NRows();
78
79 for (sa_size_t ir=0; ir<nr; ir++){
80 TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false);
81 double mean, sigma;
82 MeanSigma(tmp,mean,sigma);
83 vec(ir) = mean;
84 }
85}
86//---------
87class median_of_empty_list_exception:public std::exception{
88 virtual const char* what() const throw() {
89 return "Attempt to take the median of an empty list of numbers. "
90 "The median of an empty list is undefined.";
91 }
92 };
93 template<class RandAccessIter>
94 double median(RandAccessIter begin, RandAccessIter end)
95 throw(median_of_empty_list_exception){
96 if(begin == end){ throw median_of_empty_list_exception(); }
97 std::size_t size = end - begin;
98 std::size_t middleIdx = size/2;
99 RandAccessIter target = begin + middleIdx;
100 std::nth_element(begin, target, end);
101
102 if(size % 2 != 0){ //Odd number of elements
103 return *target;
104 }else{ //Even number of elements
105 double a = *target;
106 RandAccessIter targetNeighbor= target-1;
107 std::nth_element(begin, targetNeighbor, end);
108 return (a+*targetNeighbor)/2.0;
109 }
110 }
111
112//-------------
113void split(const string& str, const string& delimiters , vector<string>& tokens) {
114 // Skip delimiters at beginning.
115 string::size_type lastPos = str.find_first_not_of(delimiters, 0);
116 // Find first "non-delimiter".
117 string::size_type pos = str.find_first_of(delimiters, lastPos);
118
119 while (string::npos != pos || string::npos != lastPos)
120 {
121 // Found a token, add it to the vector.
122 tokens.push_back(str.substr(lastPos, pos - lastPos));
123 // Skip delimiters. Note the "not_of"
124 lastPos = str.find_first_not_of(delimiters, pos);
125 // Find next "non-delimiter"
126 pos = str.find_first_of(delimiters, lastPos);
127 }
128}
129//--------------------------------------------------------------
130char *regexp (const char *string, const char *patrn, int *begin, int *end) {
131 int i, w=0, len;
132 char *word = NULL;
133 regex_t rgT;
134 regmatch_t match;
135 regcomp(&rgT,patrn,REG_EXTENDED);
136 if ((regexec(&rgT,string,1,&match,0)) == 0) {
137 *begin = (int)match.rm_so;
138 *end = (int)match.rm_eo;
139 len = *end-*begin;
140 word=(char*)malloc(len+1);
141 for (i=*begin; i<*end; i++) {
142 word[w] = string[i];
143 w++; }
144 word[w]=0;
145 }
146 regfree(&rgT);
147 return word;
148}
149//-------
150sa_size_t round_sa(r_4 r) {
151 return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5));
152}
153//-----
154string StringToLower(string strToConvert){
155 //change each element of the string to lower case
156 for(unsigned int i=0;i<strToConvert.length();i++) {
157 strToConvert[i] = tolower(strToConvert[i]);
158 }
159 return strToConvert;//return the converted string
160}
161//-----
162bool stringCompare( const string &left, const string &right ){
163 if( left.size() < right.size() )
164 return true;
165 for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit )
166 if( tolower( *lit ) < tolower( *rit ) )
167 return true;
168 else if( tolower( *lit ) > tolower( *rit ) )
169 return false;
170 return false;
171}
172//-----
173list<string> ListOfFileInDir(string dir, string filePettern) throw(string) {
174 list<string> theList;
175
176
177 DIR *dip;
178 struct dirent *dit;
179 string msg; string fileName;
180 string fullFileName;
181 size_t found;
182
183 if ((dip=opendir(dir.c_str())) == NULL ) {
184 msg = "opendir failed on directory "+dir;
185 throw msg;
186 }
187 while ( (dit = readdir(dip)) != NULL ) {
188 fileName = dit->d_name;
189 found=fileName.find(filePettern);
190 if (found != string::npos) {
191 fullFileName = dir + "/";
192 fullFileName += fileName;
193 theList.push_back(fullFileName);
194 }
195 }//eo while
196 if (closedir(dip) == -1) {
197 msg = "closedir failed on directory "+dir;
198 throw msg;
199 }
200
201 theList.sort(stringCompare);
202
203 return theList;
204
205}
206//
207class StringMatch : public unary_function<string,bool> {
208public:
209 StringMatch(const string& pattern): pattern_(pattern){}
210 bool operator()(const string& aStr) const {
211
212
213 int b,e;
214 regexp(aStr.c_str(),pattern_.c_str(),&b,&e);
215
216// cout << "investigate " << aStr << " to find " << pattern_
217// << "[" <<b<<","<<e<<"]"
218// << endl;
219
220
221 if (b != 0) return false;
222 if (e != (int)aStr.size()) return false;
223 return true;
224
225 }
226private:
227 string pattern_;
228};
229//-------------------------------------------------------
230//Rebin in frequence + compute mean and sigma
231void reduceSpectra(const TMatrix<r_4>& specMtxInPut,
232 TMatrix<r_4>& meanMtx,
233 TMatrix<r_4>& sigmaMtx) {
234 sa_size_t nSliceFreq = para.nSliceInFreq_;
235 sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq;
236 for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){
237 sa_size_t freqLow= iSlice*deltaFreq;
238 sa_size_t freqHigh= freqLow + deltaFreq -1;
239 for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){
240 TVector<r_4> reducedRow;
241 reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions();
242 double mean;
243 double sigma;
244 MeanSigma(reducedRow,mean,sigma);
245 meanMtx(iCh,iSlice) = mean;
246 sigmaMtx(iCh,iSlice) = sigma;
247 }//eo loop on channels
248 }//eo loop on slices
249}
250//-------------------------------------------------------
251//Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra
252//
253void meanCalibBAODiffOnOffCycles() throw(string) {
254
255 list<string> listOfFiles;
256 string directoryName;
257 directoryName = para.inPath_ + "/" + para.sourceName_;
258
259 //Make the listing of the directory
260 listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_);
261
262 list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd;
263 iFileEnd = listOfFiles.end();
264
265 //mean ON-OFF over the list of cycles
266 TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0
267 TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0
268 TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0
269 static const int NINFO=19;
270 char* onffTupleName[NINFO]={"cycle"
271 ,"onoffRaw0","onoffRaw1"
272 ,"onoffRun0","onoffRun1"
273 ,"onoffCycle0","onoffCycle1"
274 ,"onoffRaw01420","onoffRaw11420"
275 ,"onoffRun01420","onoffRun11420"
276 ,"onoffCycle01420","onoffCycle11420"
277 ,"onoffRaw01420side","onoffRaw11420side"
278 ,"onoffRun01420side","onoffRun11420side"
279 ,"onoffCycle01420side","onoffCycle11420side"
280 };
281 NTuple onoffevolution(NINFO,onffTupleName);
282 r_4 xnt[NINFO];
283
284 //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up
285 sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5));
286 sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5));
287 //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up
288 sa_size_t ch1420Low = freqToChan(1420);
289 sa_size_t ch1420High = freqToChan(1421);
290
291 //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up
292 sa_size_t ch1420aLow = freqToChan(1418);
293 sa_size_t ch1420aHigh = freqToChan(1419);
294 sa_size_t ch1420bLow = freqToChan(1422);
295 sa_size_t ch1420bHigh = freqToChan(1423);
296
297
298 if (para.debuglev_>90){
299 cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl;
300 cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl;
301 }
302
303 //Loop on files/run
304
305 int totalNumberCycles=0; //total number of cycles for normalisation
306 for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) {
307 if (para.debuglev_>90){
308 cout << "load file <" << *iFile << ">" << endl;
309 }
310
311 vector<string> tokens;
312 split(*iFile,"_",tokens);
313 string dateOfRun = tokens[1];
314 if (para.debuglev_>90){
315 cout << "date <" << dateOfRun << ">" << endl;
316 }
317 vector<string> tokens2;
318 split(tokens[2],".",tokens2);
319 string srcLower = tokens2[0];
320
321
322
323 PInPersist fin(*iFile);
324 vector<string> vec = fin.GetNameTags();
325
326 vector<string> modeList;
327 modeList.push_back("On");
328 modeList.push_back("Off");
329 vector<string>::const_iterator iMode;
330
331 map<string, list<int> > cycleModeCollect;
332
333 for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) {
334 list<string> listOfSpectra;
335 //Keep only required PPF objects
336 string matchstr = "specRaw"+(*iMode)+"[0-9]+";
337 std::remove_copy_if(
338 vec.begin(), vec.end(), back_inserter(listOfSpectra),
339 not1(StringMatch(matchstr))
340 );
341
342 listOfSpectra.sort(stringCompare);
343 iSpecEnd = listOfSpectra.end();
344
345 matchstr = "[0-9]+";
346 //Loop of spectra matrix
347 list<int> listOfCycles;
348 for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){
349 int b,e;
350 regexp(iSpec->c_str(),matchstr.c_str(),&b,&e);
351 if (para.debuglev_>90){
352 cout << " spactra <" << *iSpec << ">" << endl;
353 cout << " cycle " << iSpec->substr(b) << endl;
354 }
355 listOfCycles.push_back(atoi((iSpec->substr(b)).c_str()));
356 }//end loop spectra
357 cycleModeCollect[*iMode] = listOfCycles;
358 }//end of mode
359
360 //Take the Intersection of the list Of cycles in mode Off and On
361 list<int> commonCycles;
362 set_intersection(cycleModeCollect["On"].begin(),
363 cycleModeCollect["On"].end(),
364 cycleModeCollect["Off"].begin(),
365 cycleModeCollect["Off"].end(),
366 back_inserter(commonCycles)
367 );
368
369 if (para.debuglev_>90){
370 cout << "Liste of cycles common to On & Off: <";
371 for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){
372 cout << *i << " ";
373 }
374 cout << ">" << endl;
375 }
376
377 //
378 //Load BAO Calibration factors "per Cycle and Channels"
379 //Compute the mean per Cycle to
380 // fill factors "per Run and Channels" with the same cycle list
381 //
382 //
383 //TODO improve the code....
384
385 TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0;
386 TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1;
387 TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0;
388 TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1;
389
390 string calibFileName;
391 ifstream ifs;
392 sa_size_t nr,nc; //values read
393
394 //OFF Cycle per Channel
395 calibFileName = directoryName + "/"
396 + "calib_" + dateOfRun + "_" + srcLower + "_Off_"
397 + para.calibFreq_ +"MHz-Ch0Cycles.txt";
398 if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl;
399 ifs.open(calibFileName.c_str());
400 if ( ! ifs.is_open() ) {
401
402 throw calibFileName + " cannot be opened...";
403 }
404 calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc);
405 if(para.debuglev_>9){
406 cout << "(nr,nc): "<< nr << "," << nc << endl;
407 calibBAOfactors_Off_Cycle_Ch0.Print(cout);
408 cout << endl;
409 }
410
411 TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc);
412 calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0);
413 {//Compute the mean
414 TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false);
415 double mean,sigma;
416 MeanSigma(coef,mean,sigma);
417 calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean);
418 }
419 if(para.debuglev_>9){
420 cout << "Fill calib. with mean value " << endl;
421 calibBAOfactors_Off_Run_Ch0.Print(cout);
422 cout << endl;
423 }
424 ifs.close();
425
426 //
427 calibFileName = directoryName + "/"
428 + "calib_" + dateOfRun + "_" + srcLower + "_Off_"
429 + para.calibFreq_ +"MHz-Ch1Cycles.txt";
430 if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl;
431 ifs.open(calibFileName.c_str());
432 if ( ! ifs.is_open() ) {
433
434 throw calibFileName + " cannot be opened...";
435 }
436 calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc);
437 if(para.debuglev_>9){
438 cout << "(nr,nc): "<< nr << "," << nc << endl;
439 calibBAOfactors_Off_Cycle_Ch1.Print(cout);
440 cout << endl;
441 }
442 TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc);
443 calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0);
444 {//Compute the mean
445 TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false);
446 double mean,sigma;
447 MeanSigma(coef,mean,sigma);
448 // cout << "Mean: " << mean << " sigma " << sigma << endl;
449 calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean);
450 }
451 if(para.debuglev_>9){
452 cout << "Fill calib. with mean value " << endl;
453 calibBAOfactors_Off_Run_Ch1.Print(cout);
454 cout << endl;
455 }
456 ifs.close();
457
458 //ON Cycle per Channel
459 calibFileName = directoryName + "/"
460 + "calib_" + dateOfRun + "_" + srcLower + "_On_"
461 + para.calibFreq_ +"MHz-Ch0Cycles.txt";
462 if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl;
463 ifs.open(calibFileName.c_str());
464 if ( ! ifs.is_open() ) {
465
466 throw calibFileName + " cannot be opened...";
467 }
468 calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc);
469 if(para.debuglev_>9){
470 cout << "(nr,nc): "<< nr << "," << nc << endl;
471 calibBAOfactors_On_Cycle_Ch0.Print(cout);
472 cout << endl;
473 }
474
475 TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc);
476 calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0);
477 {//Compute the mean
478 TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false);
479 double mean,sigma;
480 MeanSigma(coef,mean,sigma);
481 // cout << "Mean: " << mean << " sigma " << sigma << endl;
482 calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean);
483 }
484 if(para.debuglev_>9){
485 cout << "Fill calib. with mean value " << endl;
486 calibBAOfactors_On_Run_Ch0.Print(cout);
487 cout << endl;
488 }
489 ifs.close();
490
491
492 calibFileName = directoryName + "/"
493 + "calib_" + dateOfRun + "_" + srcLower + "_On_"
494 + para.calibFreq_ +"MHz-Ch1Cycles.txt";
495 if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl;
496 ifs.open(calibFileName.c_str());
497 if ( ! ifs.is_open() ) {
498 throw calibFileName + " cannot be opened...";
499 }
500 calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc);
501 if(para.debuglev_>9){
502 cout << "(nr,nc): "<< nr << "," << nc << endl;
503 calibBAOfactors_On_Cycle_Ch1.Print(cout);
504 cout << endl;
505 }
506 TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc);
507 calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0);
508 {//Compute the mean
509 TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false);
510 double mean,sigma;
511 MeanSigma(coef,mean,sigma);
512 // cout << "Mean: " << mean << " sigma " << sigma << endl;
513 calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean);
514 }
515 if(para.debuglev_>9){
516 cout << "Fill calib. with mean value " << endl;
517 calibBAOfactors_On_Run_Ch1.Print(cout);
518 cout << endl;
519 }
520
521 ifs.close();
522
523 //link <cycle> - <calibration coefficient>
524 //We cannot rely on identical cycle list of the OFF and ON calibration
525 map<int,r_4> calibBAO_Off_Run_Ch0;
526 map<int,r_4> calibBAO_Off_Run_Ch1;
527 map<int,r_4> calibBAO_On_Run_Ch0;
528 map<int,r_4> calibBAO_On_Run_Ch1;
529
530 map<int,r_4> calibBAO_Off_Cycle_Ch0;
531 map<int,r_4> calibBAO_Off_Cycle_Ch1;
532 map<int,r_4> calibBAO_On_Cycle_Ch0;
533 map<int,r_4> calibBAO_On_Cycle_Ch1;
534
535 //per Run based BAO coefficients
536 nr = calibBAOfactors_Off_Run_Ch0.NRows();
537 for (sa_size_t ir=0; ir<nr; ++ir){
538// cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val "
539// << calibBAOfactors_Off_Run_Ch0(ir,1) << endl;
540
541 calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)]
542 = calibBAOfactors_Off_Run_Ch0(ir,1);
543 calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)]
544 = calibBAOfactors_Off_Cycle_Ch0(ir,1);
545 calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)]
546 = calibBAOfactors_Off_Run_Ch1(ir,1);
547 calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)]
548 = calibBAOfactors_Off_Cycle_Ch1(ir,1);
549 }//eo loop on coef Off
550
551 nr = calibBAOfactors_On_Run_Ch0.NRows();
552 for (sa_size_t ir=0; ir<nr; ++ir){
553 calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)]
554 = calibBAOfactors_On_Run_Ch0(ir,1);
555 calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)]
556 = calibBAOfactors_On_Cycle_Ch0(ir,1);
557 calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)]
558 = calibBAOfactors_On_Run_Ch1(ir,1);
559 calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)]
560 = calibBAOfactors_On_Cycle_Ch1(ir,1);
561 }//eo loop on coef On
562
563 //Loop on cyles
564 for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){
565
566 //Look if the cycle has been calibrated...
567 bool isCycleCalibrated =
568 ( calibBAO_On_Run_Ch0.count(*ic) *
569 calibBAO_On_Run_Ch1.count(*ic) *
570 calibBAO_Off_Run_Ch0.count(*ic) *
571 calibBAO_Off_Run_Ch1.count(*ic) *
572 calibBAO_On_Cycle_Ch0.count(*ic) *
573 calibBAO_On_Cycle_Ch1.count(*ic) *
574 calibBAO_Off_Cycle_Ch0.count(*ic) *
575 calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false;
576
577 if(para.debuglev_>9) {
578 cout << "Calibration coefficients for cycle "<<*ic << endl;
579 if (isCycleCalibrated) {
580 cout << "Cycle calibrated " << endl;
581 cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " "
582 << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n"
583 << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " "
584 << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n"
585 << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " "
586 << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n"
587 << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " "
588 << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl;
589 } else {
590 cout << "Cycle NOT calibrated " << endl;
591 }
592 }//debug
593
594
595 if ( ! isCycleCalibrated ) continue;
596
597 string ppftag;
598 //load ON phase
599 stringstream cycle;
600 cycle << *ic;
601
602 ppftag = "specRawOn"+cycle.str();
603 TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
604 fin.GetObject(aSpecOn,ppftag);
605
606 TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false);
607 aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic];
608 aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic];
609
610 TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false);
611 aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic];
612 aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic];
613
614 ppftag = "specRawOff"+cycle.str();
615 TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
616 fin.GetObject(aSpecOff,ppftag);
617
618 TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false);
619 aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic];
620 aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic];
621
622 TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false);
623 aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic];
624 aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic];
625
626
627 //Perform the difference ON-OFF with the different calibration options
628 TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff;
629 meanDiffONOFF_noCalib += diffOnOff_noCalib;
630
631 TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun;
632 meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib;
633
634 TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle;
635 meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib;
636
637 //
638 totalNumberCycles++;
639 //Fill NTuple
640 xnt[0] = totalNumberCycles;
641
642 //Follow up arround the Calibration Freq.
643 TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS);
644 meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib);
645 xnt[1] = meanInRange_CalibFreq_noCalib(0);
646 xnt[2] = meanInRange_CalibFreq_noCalib(1);
647
648 TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS);
649 meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib);
650 xnt[3] = meanInRange_CalibFreq_perRunCalib(0);
651 xnt[4] = meanInRange_CalibFreq_perRunCalib(1);
652
653 TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS);
654 meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib);
655 xnt[5] = meanInRange_CalibFreq_perCycleCalib(0);
656 xnt[6] = meanInRange_CalibFreq_perCycleCalib(1);
657
658
659 //Follow up arround the 1420.4MHz Freq.
660 TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS);
661 meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib);
662 xnt[7] = meanInRange_1420Freq_noCalib(0);
663 xnt[8] = meanInRange_1420Freq_noCalib(1);
664
665 TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS);
666 meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib);
667 xnt[9] = meanInRange_1420Freq_perRunCalib(0);
668 xnt[10] = meanInRange_1420Freq_perRunCalib(1);
669
670 TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS);
671 meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib);
672 xnt[11] = meanInRange_1420Freq_perCycleCalib(0);
673 xnt[12] = meanInRange_1420Freq_perCycleCalib(1);
674
675
676 //Follow up below the 1420.4MHz Freq.
677 TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS);
678 meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib);
679 TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS);
680 meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib);
681
682 xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.;
683 xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.;
684
685
686 TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS);
687 meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun);
688 TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS);
689 meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun);
690
691 xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.;
692 xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.;
693
694
695 TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS);
696 meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle);
697 TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS);
698 meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle);
699
700 xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.;
701 xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.;
702
703
704 //store infos to Ntuple
705 onoffevolution.Fill(xnt);
706
707 //Quit if enough
708 if (totalNumberCycles >= para.maxNumberCycles_) break;
709
710 }//eo loop on cycles
711 if (totalNumberCycles >= para.maxNumberCycles_) break;
712
713 }//eo loop on spectra in a file
714 cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl;
715 //Normalisation
716 if(totalNumberCycles > 0){
717 meanDiffONOFF_noCalib /= (r_4)totalNumberCycles;
718 meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles;
719 meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles;
720 }
721
722 //Compute the reduced version of the mean and sigma
723 TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
724 TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
725 reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib);
726
727 TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
728 TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
729 reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib);
730
731 TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
732 TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
733 reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib);
734
735 {//save the results
736 stringstream tmp;
737 tmp << totalNumberCycles;
738 string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf";
739
740 POutPersist fos(fileName);
741 cout << "Save output in " << fileName << endl;
742
743 string tag = "meanNoCalib";
744 fos << PPFNameTag(tag) << meanDiffONOFF_noCalib;
745 tag = "meanPerRunCalib";
746 fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib;
747 tag = "meanPerCycleCalib";
748 fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib;
749
750 tag = "redmeanNoCalib";
751 fos << PPFNameTag(tag) << meanRedMtx_noCalib;
752 tag = "redsigmaNoCalib";
753 fos << PPFNameTag(tag) << sigmaRedMtx_noCalib;
754
755 tag = "redmeanPerRunCalib";
756 fos << PPFNameTag(tag) << meanRedMtx_perRunCalib;
757 tag = "redsigmaPerRunCalib";
758 fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib;
759
760 tag = "redmeanPerCycleCalib";
761 fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib;
762 tag = "redsigmaPerCycleCalib";
763 fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib;
764
765 tag = "onoffevol";
766 fos << PPFNameTag(tag) << onoffevolution;
767 }//end of save
768}
769//-------------------------------------------------------
770//Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra
771//Used like:
772//
773void meanRawDiffOnOffCycles() throw(string) {
774 list<string> listOfFiles;
775 string directoryName;
776 directoryName = para.inPath_ + "/" + para.sourceName_;
777
778 //Make the listing of the directory
779 listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_);
780
781 list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd;
782 iFileEnd = listOfFiles.end();
783
784 StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects
785 TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
786 uint_4 nSpectra=0;
787 //Loop on files
788 for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) {
789 if (para.debuglev_>90){
790 cout << "load file <" << *iFile << ">" << endl;
791 }
792 PInPersist fin(*iFile);
793 vector<string> vec = fin.GetNameTags();
794 list<string> listOfSpectra;
795 //Keep only required PPF objects
796 std::remove_copy_if(
797 vec.begin(), vec.end(), back_inserter(listOfSpectra),
798 not1(match)
799 );
800
801 listOfSpectra.sort(stringCompare);
802 iSpecEnd = listOfSpectra.end();
803 //Loop of spectra matrix
804 for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){
805 if (para.debuglev_>90){
806 cout << " spactra <" << *iSpec << ">" << endl;
807 }
808 TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
809 fin.GetObject(aSpec,*iSpec);
810 //How to see if the GetObject is ok?? Ask Reza
811 nSpectra++;
812 meanOfSpectra+=aSpec;
813 }//eo loop on spectra in a file
814 }//eo loop on files
815
816 //Normalisation
817 if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra);
818
819 //Compute the reduced version of the mean and sigma
820 TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
821 TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
822 reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx);
823
824 {//Save the result
825 stringstream tmp;
826 tmp << nSpectra;
827 string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf";
828 cout << "Save mean based on " << nSpectra << " cycles " << endl;
829 POutPersist fos(fileName);
830
831 string tag = "mean";
832 fos << PPFNameTag(tag) << meanOfSpectra;
833 tag = "meanred";
834 fos << PPFNameTag(tag) << meanRedMtx;
835 tag = "sigmared";
836 fos << PPFNameTag(tag) << sigmaRedMtx;
837 }
838}
839//-------------------------------------------------------
840//Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra
841//Used like:
842//
843void medianRawDiffOnOffCycles() throw(string) {
844 list<string> listOfFiles;
845 string directoryName;
846 directoryName = para.inPath_ + "/" + para.sourceName_;
847
848 //Make the listing of the directory
849 listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_);
850
851 list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd;
852 iFileEnd = listOfFiles.end();
853
854
855 TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough...
856
857 StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects
858 uint_4 nSpectra=0;
859 //Loop on files
860 for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) {
861 if (para.debuglev_>90){
862 cout << "load file <" << *iFile << ">" << endl;
863 }
864 PInPersist fin(*iFile);
865 vector<string> vec = fin.GetNameTags();
866 list<string> listOfSpectra;
867 //Keep only required PPF objects
868 std::remove_copy_if(
869 vec.begin(), vec.end(), back_inserter(listOfSpectra),
870 not1(match)
871 );
872
873 listOfSpectra.sort(stringCompare);
874 iSpecEnd = listOfSpectra.end();
875 //Loop of spectra matrix
876 for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){
877 if (para.debuglev_>90){
878 cout << " spactra <" << *iSpec << ">" << endl;
879 }
880 TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
881 fin.GetObject(aSpec,*iSpec);
882
883 tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec;
884
885 nSpectra++;
886 }//eo loop on spectra in a file
887 }//eo loop on files
888
889
890
891 TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ);
892 //Compute the median for each freq. and Channel
893 for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){
894 for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){
895 TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions());
896 vector<r_4> tmp;
897 tmp0.FillTo(tmp);
898 medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end());
899 }
900 }
901
902
903 //Compute the reduced version of the mean and sigma
904 TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
905 TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_);
906 reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx);
907
908
909 sa_size_t f1320=freqToChan(1320.);
910 sa_size_t f1345=freqToChan(1345.);
911 sa_size_t f1355=freqToChan(1355.);
912 sa_size_t f1380=freqToChan(1380.);
913 //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]
914 if (para.debuglev_>9){
915 cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl;
916 }
917 TVector<r_4>meanMed(NUMBER_OF_CHANNELS);
918 for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){
919 double meanMed1;
920 double sigmaMed1;
921 TVector<r_4> band1;
922 band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions();
923 MeanSigma(band1,meanMed1,sigmaMed1);
924 double meanMed2;
925 double sigmaMed2;
926 TVector<r_4> band2;
927 band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions();
928 MeanSigma(band2,meanMed2,sigmaMed2);
929 meanMed(iCh) = (meanMed1+meanMed2)*0.5;
930 }
931 meanMed.Print(cout);
932 cout << endl;
933
934
935 //Compute the sigma in the range 1320MHz-1380MHz
936 if (para.debuglev_>9){
937 cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl;
938 }
939 TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS);
940 sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_);
941 sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_);
942
943 for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){
944 double meanSigma;
945 double sigmaSigma;
946 TVector<r_4> band;
947 band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions();
948 MeanSigma(band,meanSigma,sigmaSigma);
949 meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra
950 sigmaMed(iCh) = meanSigma;
951 }
952 sigmaMed.Print(cout);
953 cout << endl;
954
955
956
957 if (para.debuglev_>9){
958 cout << "Compute medianOfSpectraNorm" << endl;
959 }
960 TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data...
961 for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){
962 medianOfSpectraNorm.Row(iCh) -= meanMed(iCh);
963 medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh);
964 }
965
966
967
968 {//Save the result
969 stringstream tmp;
970 tmp << nSpectra;
971 string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf";
972 cout << "Save median based on " << nSpectra << " cycles " << endl;
973 POutPersist fos(fileName);
974
975 string tag = "median";
976 fos << PPFNameTag(tag) << medianOfSpectra;
977
978 tag = "medianNorm";
979 fos << PPFNameTag(tag) << medianOfSpectraNorm;
980
981
982 tag = "meanmedred";
983 fos << PPFNameTag(tag) << meanRedMtx;
984 tag = "sigmamedred";
985 fos << PPFNameTag(tag) << sigmaRedMtx;
986 tag = "cycleVsfreq";
987
988 TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1)));
989 fos << PPFNameTag(tag) << tarr;
990 }
991}
992
993//-------------------------------------------------------
994int main(int narg, char* arg[]) {
995
996 int rc = 0; //return code
997 string msg; //message used in Exceptions
998
999
1000
1001 //default value for initial parameters (see Para structure on top of the file)
1002 string debuglev = "0";
1003 string action = "meanDiffOnOff";
1004 string inputPath = ".";
1005 string outputPath = ".";
1006 string sourceName = "Abell85";
1007 string ppfFile;
1008 string nSliceInFreq = "32";
1009 string typeOfCalib="perRun";
1010 string calibFreq = "1346";
1011 string calibBandFreq="6.25";
1012 string mxcycles;
1013
1014 // bool okarg=false;
1015 int ka=1;
1016 while (ka<narg) {
1017 if (strcmp(arg[ka],"-h")==0) {
1018 cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n"
1019 << " -mxcycles <number> (max. number of cycles to be treated)\n"
1020 << " -calibfreq <number> (cf. freq. used by calibration operation)\n"
1021 << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n"
1022 << " -src [Abell85]\n"
1023 << " -inPath [.]|<top_root_dir of the ppf file>\n"
1024 << " (ex. /sps/baoradio/AmasNancay/JEC/\n "
1025 << " -outPath [.]|<dir of the output> \n"
1026 << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n"
1027 << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n"
1028 << " -debug <level> "
1029 << endl;
1030 return 0;
1031 }
1032 else if (strcmp(arg[ka],"-debug")==0) {
1033 debuglev=arg[ka+1];
1034 ka+=2;
1035 }
1036 else if (strcmp(arg[ka],"-act")==0) {
1037 action=arg[ka+1];
1038 ka+=2;
1039 }
1040 else if (strcmp(arg[ka],"-calibfreq")==0) {
1041 calibFreq=arg[ka+1];
1042 ka+=2;
1043 }
1044 else if (strcmp(arg[ka],"-calibbandfreq")==0) {
1045 calibBandFreq=arg[ka+1];
1046 ka+=2;
1047 }
1048 else if (strcmp(arg[ka],"-mxcycles")==0) {
1049 mxcycles=arg[ka+1];
1050 ka+=2;
1051 }
1052 else if (strcmp(arg[ka],"-inPath")==0) {
1053 inputPath=arg[ka+1];
1054 ka+=2;
1055 }
1056 else if (strcmp(arg[ka],"-outPath")==0) {
1057 outputPath=arg[ka+1];
1058 ka+=2;
1059 }
1060 else if (strcmp(arg[ka],"-src")==0) {
1061 sourceName=arg[ka+1];
1062 ka+=2;
1063 }
1064 else if (strcmp(arg[ka],"-ppfFile")==0) {
1065 ppfFile=arg[ka+1];
1066 ka+=2;
1067 }
1068 else if (strcmp(arg[ka],"-nSliceInFreq")==0) {
1069 nSliceInFreq=arg[ka+1];
1070 ka+=2;
1071 }
1072 else ka++;
1073 }//eo while
1074
1075 para.debuglev_ = atoi(debuglev.c_str());
1076 para.inPath_ = inputPath;
1077 para.outPath_ = outputPath;
1078 para.sourceName_ = sourceName;
1079 para.ppfFile_ = ppfFile;
1080 para.nSliceInFreq_ = atoi(nSliceInFreq.c_str());
1081 para.calibFreq_ = calibFreq;
1082 para.calibBandFreq_ = calibBandFreq;
1083 para.rcalibFreq_ = atof(calibFreq.c_str());
1084 para.rcalibBandFreq_ = atof(calibBandFreq.c_str());
1085 if (mxcycles != "") {
1086 para.maxNumberCycles_ = atoi(mxcycles.c_str());
1087 } else {
1088 para.maxNumberCycles_ = std::numeric_limits<int>::max();
1089 }
1090
1091 cout << "Dump Initial parameters ............" << endl;
1092 cout << " action = " << action << "\n"
1093 << " maxNumberCycles = " << para.maxNumberCycles_ << "\n"
1094 << " inputPath = " << para.inPath_ << "\n"
1095 << " outputPath = " << para.outPath_ << "\n"
1096 << " sourceName = " << para.sourceName_ << "\n"
1097 << " ppfFile = " << para.ppfFile_ << "\n"
1098 << " nSliceInFreq = " << para.nSliceInFreq_ << "\n"
1099 << " calibFreq = " << para.calibFreq_ << "\n"
1100 << " calibBandFreq = " << para.calibBandFreq_ << "\n"
1101 << " debuglev = " << para.debuglev_ << "\n";
1102 cout << "...................................." << endl;
1103
1104 if ( "" == ppfFile ) {
1105 cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option"
1106 << endl;
1107 return 999;
1108 }
1109
1110
1111 try {
1112
1113// int b,e;
1114// char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e);
1115// printf("->%s<-\n(b=%d e=%d)\n",match,b,e);
1116
1117 if ( action == "meanRawDiffOnOff" ) {
1118 meanRawDiffOnOffCycles();
1119 } else if (action == "medianRawDiffOnOff") {
1120 medianRawDiffOnOffCycles();
1121 } else if (action == "meanCalibBAODiffOnOff") {
1122 meanCalibBAODiffOnOffCycles();
1123 } else {
1124 msg = "Unknown action " + action;
1125 throw msg;
1126 }
1127
1128
1129 } catch (std::exception& sex) {
1130 cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name()
1131 << "\n msg= " << sex.what() << endl;
1132 rc = 78;
1133 }
1134 catch ( string str ) {
1135 cerr << "mergeRawOnOff.cc Exception raised: " << str << endl;
1136 }
1137 catch (...) {
1138 cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl;
1139 rc = 79;
1140 }
1141
1142 return 0;
1143
1144}
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