1 | // Utilisation de SOPHYA pour faciliter les tests ... |
---|
2 | #include "sopnamsp.h" |
---|
3 | #include "machdefs.h" |
---|
4 | #include <dirent.h> |
---|
5 | #include <matharr.h> |
---|
6 | |
---|
7 | // include standard c/c++ |
---|
8 | #include <regex.h> |
---|
9 | #include <stdio.h> |
---|
10 | #include <stdlib.h> |
---|
11 | #include <limits> |
---|
12 | #include <iostream> |
---|
13 | #include <fstream> |
---|
14 | #include <string> |
---|
15 | #include <vector> |
---|
16 | #include <map> |
---|
17 | #include <functional> |
---|
18 | #include <algorithm> |
---|
19 | #include <numeric> |
---|
20 | #include <list> |
---|
21 | #include <exception> |
---|
22 | |
---|
23 | // include sophya mesure ressource CPU/memoire ... |
---|
24 | #include "resusage.h" |
---|
25 | #include "ctimer.h" |
---|
26 | #include "timing.h" |
---|
27 | #include "timestamp.h" |
---|
28 | #include "strutilxx.h" |
---|
29 | #include "ntuple.h" |
---|
30 | #include "fioarr.h" |
---|
31 | #include "tarrinit.h" |
---|
32 | #include "histinit.h" |
---|
33 | #include "fitsioserver.h" |
---|
34 | #include "fiosinit.h" |
---|
35 | #include "ppersist.h" |
---|
36 | |
---|
37 | //----------------------------------------------- |
---|
38 | //Usage |
---|
39 | // |
---|
40 | //./Objs/mergeAnaFiles -act meanCalibBAODiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src Abell85 -ppfFile dataRaw -debug 1 -mxcycles 500 |
---|
41 | //./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log |
---|
42 | // |
---|
43 | // |
---|
44 | //----------------------------------------------- |
---|
45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
---|
46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
---|
47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
---|
48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
---|
49 | //Input parameters |
---|
50 | struct Param { |
---|
51 | int debuglev_; //debug |
---|
52 | string inPath_; //root directory of the input files |
---|
53 | string outPath_; //output files are located here |
---|
54 | string sourceName_; //source name & subdirectory of the input files |
---|
55 | string ppfFile_; //generic name of the input files |
---|
56 | int nSliceInFreq_; //used by reduceSpectra() fnc |
---|
57 | string calibFreq_; //freq. value used for calibration |
---|
58 | r_4 rcalibFreq_; //float version |
---|
59 | string calibBandFreq_; //band of freq. used for calibration |
---|
60 | r_4 rcalibBandFreq_; //float version |
---|
61 | int maxNumberCycles_;//maximum number of cycles to be treated |
---|
62 | } para; |
---|
63 | //-------------------------------------------------------------- |
---|
64 | //Utility functions |
---|
65 | |
---|
66 | sa_size_t freqToChan(r_4 f){ |
---|
67 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
---|
68 | } |
---|
69 | //-------- |
---|
70 | //COMPUTE the mean value on a freq. range for all channels |
---|
71 | //-------- |
---|
72 | void meanInRange(const TMatrix<r_4> mtx, |
---|
73 | sa_size_t chLow, |
---|
74 | sa_size_t chHigh, |
---|
75 | TVector<r_4>& vec){ |
---|
76 | |
---|
77 | sa_size_t nr = mtx.NRows(); |
---|
78 | |
---|
79 | for (sa_size_t ir=0; ir<nr; ir++){ |
---|
80 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
---|
81 | double mean, sigma; |
---|
82 | MeanSigma(tmp,mean,sigma); |
---|
83 | vec(ir) = mean; |
---|
84 | } |
---|
85 | } |
---|
86 | //--------- |
---|
87 | class median_of_empty_list_exception:public std::exception{ |
---|
88 | virtual const char* what() const throw() { |
---|
89 | return "Attempt to take the median of an empty list of numbers. " |
---|
90 | "The median of an empty list is undefined."; |
---|
91 | } |
---|
92 | }; |
---|
93 | template<class RandAccessIter> |
---|
94 | double median(RandAccessIter begin, RandAccessIter end) |
---|
95 | throw(median_of_empty_list_exception){ |
---|
96 | if(begin == end){ throw median_of_empty_list_exception(); } |
---|
97 | std::size_t size = end - begin; |
---|
98 | std::size_t middleIdx = size/2; |
---|
99 | RandAccessIter target = begin + middleIdx; |
---|
100 | std::nth_element(begin, target, end); |
---|
101 | |
---|
102 | if(size % 2 != 0){ //Odd number of elements |
---|
103 | return *target; |
---|
104 | }else{ //Even number of elements |
---|
105 | double a = *target; |
---|
106 | RandAccessIter targetNeighbor= target-1; |
---|
107 | std::nth_element(begin, targetNeighbor, end); |
---|
108 | return (a+*targetNeighbor)/2.0; |
---|
109 | } |
---|
110 | } |
---|
111 | |
---|
112 | //------------- |
---|
113 | //JEC 25/10/11 Perform a median filtering with a sliding window of "halfwidth" half width |
---|
114 | // It takes care of the edges and is based on the median function (above) |
---|
115 | void medianFiltering(const TMatrix<r_4> mtx, |
---|
116 | sa_size_t halfwidth, |
---|
117 | TMatrix<r_4>& vec) { |
---|
118 | |
---|
119 | sa_size_t nr = mtx.NRows(); |
---|
120 | sa_size_t nc = mtx.NCols(); |
---|
121 | sa_size_t chMin = 0; |
---|
122 | sa_size_t chMax = nc-1; |
---|
123 | |
---|
124 | for (sa_size_t ir=0; ir<nr; ir++){ |
---|
125 | for (sa_size_t ic=0; ic<nc; ic++) { |
---|
126 | sa_size_t chLow = ic-halfwidth; |
---|
127 | chLow = (chLow >= chMin) ? chLow : chMin; |
---|
128 | sa_size_t chHigh = ic+halfwidth; |
---|
129 | chHigh = ( chHigh <= chMax ) ? chHigh : chMax; |
---|
130 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
---|
131 | vector<r_4> val; |
---|
132 | tmp.FillTo(val); |
---|
133 | vec(ir,ic) = median(val.begin(),val.end()); |
---|
134 | } |
---|
135 | } |
---|
136 | } |
---|
137 | //------------- |
---|
138 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
---|
139 | // Skip delimiters at beginning. |
---|
140 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
---|
141 | // Find first "non-delimiter". |
---|
142 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
---|
143 | |
---|
144 | while (string::npos != pos || string::npos != lastPos) |
---|
145 | { |
---|
146 | // Found a token, add it to the vector. |
---|
147 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
---|
148 | // Skip delimiters. Note the "not_of" |
---|
149 | lastPos = str.find_first_not_of(delimiters, pos); |
---|
150 | // Find next "non-delimiter" |
---|
151 | pos = str.find_first_of(delimiters, lastPos); |
---|
152 | } |
---|
153 | } |
---|
154 | //-------------------------------------------------------------- |
---|
155 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
---|
156 | int i, w=0, len; |
---|
157 | char *word = NULL; |
---|
158 | regex_t rgT; |
---|
159 | regmatch_t match; |
---|
160 | regcomp(&rgT,patrn,REG_EXTENDED); |
---|
161 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
---|
162 | *begin = (int)match.rm_so; |
---|
163 | *end = (int)match.rm_eo; |
---|
164 | len = *end-*begin; |
---|
165 | word=(char*)malloc(len+1); |
---|
166 | for (i=*begin; i<*end; i++) { |
---|
167 | word[w] = string[i]; |
---|
168 | w++; } |
---|
169 | word[w]=0; |
---|
170 | } |
---|
171 | regfree(&rgT); |
---|
172 | return word; |
---|
173 | } |
---|
174 | //------- |
---|
175 | sa_size_t round_sa(r_4 r) { |
---|
176 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
---|
177 | } |
---|
178 | //----- |
---|
179 | string StringToLower(string strToConvert){ |
---|
180 | //change each element of the string to lower case |
---|
181 | for(unsigned int i=0;i<strToConvert.length();i++) { |
---|
182 | strToConvert[i] = tolower(strToConvert[i]); |
---|
183 | } |
---|
184 | return strToConvert;//return the converted string |
---|
185 | } |
---|
186 | //----- |
---|
187 | bool stringCompare( const string &left, const string &right ){ |
---|
188 | if( left.size() < right.size() ) |
---|
189 | return true; |
---|
190 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
---|
191 | if( tolower( *lit ) < tolower( *rit ) ) |
---|
192 | return true; |
---|
193 | else if( tolower( *lit ) > tolower( *rit ) ) |
---|
194 | return false; |
---|
195 | return false; |
---|
196 | } |
---|
197 | //----- |
---|
198 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
---|
199 | list<string> theList; |
---|
200 | |
---|
201 | |
---|
202 | DIR *dip; |
---|
203 | struct dirent *dit; |
---|
204 | string msg; string fileName; |
---|
205 | string fullFileName; |
---|
206 | size_t found; |
---|
207 | |
---|
208 | if ((dip=opendir(dir.c_str())) == NULL ) { |
---|
209 | msg = "opendir failed on directory "+dir; |
---|
210 | throw msg; |
---|
211 | } |
---|
212 | while ( (dit = readdir(dip)) != NULL ) { |
---|
213 | fileName = dit->d_name; |
---|
214 | found=fileName.find(filePettern); |
---|
215 | if (found != string::npos) { |
---|
216 | fullFileName = dir + "/"; |
---|
217 | fullFileName += fileName; |
---|
218 | theList.push_back(fullFileName); |
---|
219 | } |
---|
220 | }//eo while |
---|
221 | if (closedir(dip) == -1) { |
---|
222 | msg = "closedir failed on directory "+dir; |
---|
223 | throw msg; |
---|
224 | } |
---|
225 | |
---|
226 | theList.sort(stringCompare); |
---|
227 | |
---|
228 | return theList; |
---|
229 | |
---|
230 | } |
---|
231 | // |
---|
232 | class StringMatch : public unary_function<string,bool> { |
---|
233 | public: |
---|
234 | StringMatch(const string& pattern): pattern_(pattern){} |
---|
235 | bool operator()(const string& aStr) const { |
---|
236 | |
---|
237 | |
---|
238 | int b,e; |
---|
239 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
---|
240 | |
---|
241 | // cout << "investigate " << aStr << " to find " << pattern_ |
---|
242 | // << "[" <<b<<","<<e<<"]" |
---|
243 | // << endl; |
---|
244 | |
---|
245 | |
---|
246 | if (b != 0) return false; |
---|
247 | if (e != (int)aStr.size()) return false; |
---|
248 | return true; |
---|
249 | |
---|
250 | } |
---|
251 | private: |
---|
252 | string pattern_; |
---|
253 | }; |
---|
254 | //------------------------------------------------------- |
---|
255 | //Rebin in frequence + compute mean and sigma |
---|
256 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
---|
257 | TMatrix<r_4>& meanMtx, |
---|
258 | TMatrix<r_4>& sigmaMtx) { |
---|
259 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
---|
260 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
---|
261 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
---|
262 | sa_size_t freqLow= iSlice*deltaFreq; |
---|
263 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
---|
264 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
265 | TVector<r_4> reducedRow; |
---|
266 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
---|
267 | double mean; |
---|
268 | double sigma; |
---|
269 | MeanSigma(reducedRow,mean,sigma); |
---|
270 | meanMtx(iCh,iSlice) = mean; |
---|
271 | sigmaMtx(iCh,iSlice) = sigma; |
---|
272 | }//eo loop on channels |
---|
273 | }//eo loop on slices |
---|
274 | } |
---|
275 | //------------------------------------------------------- |
---|
276 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
---|
277 | // |
---|
278 | void meanCalibBAODiffOnOffCycles() throw(string) { |
---|
279 | |
---|
280 | list<string> listOfFiles; |
---|
281 | string directoryName; |
---|
282 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
283 | |
---|
284 | //Make the listing of the directory |
---|
285 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
286 | |
---|
287 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
288 | iFileEnd = listOfFiles.end(); |
---|
289 | |
---|
290 | //mean ON-OFF over the list of cycles |
---|
291 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
292 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
293 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
294 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
295 | static const int NINFO=21; |
---|
296 | char* onffTupleName[NINFO]={"cycle" |
---|
297 | ,"onoffRaw0","onoffRaw1" |
---|
298 | ,"onoffRun0","onoffRun1" |
---|
299 | ,"onoffCycle0","onoffCycle1" |
---|
300 | ,"onoffRaw01420","onoffRaw11420" |
---|
301 | ,"onoffRun01420","onoffRun11420" |
---|
302 | ,"onoffCycle01420","onoffCycle11420" |
---|
303 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
304 | ,"onoffRun01420side","onoffRun11420side" |
---|
305 | ,"onoffCycle01420side","onoffCycle11420side" |
---|
306 | ,"onoffRaw0f14001420","onoffRaw1f14001420" |
---|
307 | }; |
---|
308 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
309 | r_4 xnt[NINFO]; |
---|
310 | |
---|
311 | //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up |
---|
312 | sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
---|
313 | sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
---|
314 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
---|
315 | sa_size_t ch1420Low = freqToChan(1420.4-0.2); |
---|
316 | sa_size_t ch1420High = freqToChan(1420.4+0.2); |
---|
317 | |
---|
318 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
319 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
320 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
321 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
322 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
323 | |
---|
324 | //25/10/11 follow 1400-1420Mhz |
---|
325 | sa_size_t ch1420 = freqToChan(1420); |
---|
326 | sa_size_t ch1400 = freqToChan(1400); |
---|
327 | |
---|
328 | if (para.debuglev_>0){ |
---|
329 | cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl; |
---|
330 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
331 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
332 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
333 | } |
---|
334 | |
---|
335 | //Loop on files/run |
---|
336 | |
---|
337 | int totalNumberCycles=0; //total number of cycles for normalisation |
---|
338 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
339 | if (para.debuglev_>90){ |
---|
340 | cout << "load file <" << *iFile << ">" << endl; |
---|
341 | } |
---|
342 | |
---|
343 | vector<string> tokens; |
---|
344 | split(*iFile,"_",tokens); |
---|
345 | string dateOfRun = tokens[1]; |
---|
346 | if (para.debuglev_>90){ |
---|
347 | cout << "date <" << dateOfRun << ">" << endl; |
---|
348 | } |
---|
349 | vector<string> tokens2; |
---|
350 | split(tokens[2],".",tokens2); |
---|
351 | string srcLower = tokens2[0]; |
---|
352 | |
---|
353 | |
---|
354 | |
---|
355 | PInPersist fin(*iFile); |
---|
356 | vector<string> vec = fin.GetNameTags(); |
---|
357 | |
---|
358 | vector<string> modeList; |
---|
359 | modeList.push_back("On"); |
---|
360 | modeList.push_back("Off"); |
---|
361 | vector<string>::const_iterator iMode; |
---|
362 | |
---|
363 | map<string, list<int> > cycleModeCollect; |
---|
364 | |
---|
365 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
366 | list<string> listOfSpectra; |
---|
367 | //Keep only required PPF objects |
---|
368 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
369 | std::remove_copy_if( |
---|
370 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
371 | not1(StringMatch(matchstr)) |
---|
372 | ); |
---|
373 | |
---|
374 | listOfSpectra.sort(stringCompare); |
---|
375 | iSpecEnd = listOfSpectra.end(); |
---|
376 | |
---|
377 | matchstr = "[0-9]+"; |
---|
378 | //Loop of spectra matrix |
---|
379 | list<int> listOfCycles; |
---|
380 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
381 | int b,e; |
---|
382 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
383 | if (para.debuglev_>90){ |
---|
384 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
385 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
386 | } |
---|
387 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
388 | }//end loop spectra |
---|
389 | cycleModeCollect[*iMode] = listOfCycles; |
---|
390 | }//end of mode |
---|
391 | |
---|
392 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
393 | list<int> commonCycles; |
---|
394 | set_intersection(cycleModeCollect["On"].begin(), |
---|
395 | cycleModeCollect["On"].end(), |
---|
396 | cycleModeCollect["Off"].begin(), |
---|
397 | cycleModeCollect["Off"].end(), |
---|
398 | back_inserter(commonCycles) |
---|
399 | ); |
---|
400 | |
---|
401 | if (para.debuglev_>90){ |
---|
402 | cout << "Liste of cycles common to On & Off: <"; |
---|
403 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
404 | cout << *i << " "; |
---|
405 | } |
---|
406 | cout << ">" << endl; |
---|
407 | } |
---|
408 | |
---|
409 | // |
---|
410 | //Load BAO Calibration factors "per Cycle and Channels" |
---|
411 | //Compute the mean per Cycle to |
---|
412 | // fill factors "per Run and Channels" with the same cycle list |
---|
413 | // |
---|
414 | // |
---|
415 | //TODO improve the code.... |
---|
416 | |
---|
417 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
---|
418 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
---|
419 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
---|
420 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
---|
421 | |
---|
422 | string calibFileName; |
---|
423 | ifstream ifs; |
---|
424 | sa_size_t nr,nc; //values read |
---|
425 | |
---|
426 | //OFF Cycle per Channel |
---|
427 | calibFileName = directoryName + "/" |
---|
428 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
429 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
430 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
431 | ifs.open(calibFileName.c_str()); |
---|
432 | if ( ! ifs.is_open() ) { |
---|
433 | |
---|
434 | throw calibFileName + " cannot be opened..."; |
---|
435 | } |
---|
436 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
437 | if(para.debuglev_>9){ |
---|
438 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
439 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
440 | cout << endl; |
---|
441 | } |
---|
442 | |
---|
443 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
444 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
445 | {//Compute the mean |
---|
446 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
447 | double mean,sigma; |
---|
448 | MeanSigma(coef,mean,sigma); |
---|
449 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
450 | } |
---|
451 | if(para.debuglev_>9){ |
---|
452 | cout << "Fill calib. with mean value " << endl; |
---|
453 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
454 | cout << endl; |
---|
455 | } |
---|
456 | ifs.close(); |
---|
457 | |
---|
458 | // |
---|
459 | calibFileName = directoryName + "/" |
---|
460 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
461 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
462 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
463 | ifs.open(calibFileName.c_str()); |
---|
464 | if ( ! ifs.is_open() ) { |
---|
465 | |
---|
466 | throw calibFileName + " cannot be opened..."; |
---|
467 | } |
---|
468 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
469 | if(para.debuglev_>9){ |
---|
470 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
471 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
472 | cout << endl; |
---|
473 | } |
---|
474 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
475 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
476 | {//Compute the mean |
---|
477 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
478 | double mean,sigma; |
---|
479 | MeanSigma(coef,mean,sigma); |
---|
480 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
481 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
482 | } |
---|
483 | if(para.debuglev_>9){ |
---|
484 | cout << "Fill calib. with mean value " << endl; |
---|
485 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
486 | cout << endl; |
---|
487 | } |
---|
488 | ifs.close(); |
---|
489 | |
---|
490 | //ON Cycle per Channel |
---|
491 | calibFileName = directoryName + "/" |
---|
492 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
493 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
494 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
495 | ifs.open(calibFileName.c_str()); |
---|
496 | if ( ! ifs.is_open() ) { |
---|
497 | |
---|
498 | throw calibFileName + " cannot be opened..."; |
---|
499 | } |
---|
500 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
501 | if(para.debuglev_>9){ |
---|
502 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
503 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
504 | cout << endl; |
---|
505 | } |
---|
506 | |
---|
507 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
508 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
509 | {//Compute the mean |
---|
510 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
511 | double mean,sigma; |
---|
512 | MeanSigma(coef,mean,sigma); |
---|
513 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
514 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
515 | } |
---|
516 | if(para.debuglev_>9){ |
---|
517 | cout << "Fill calib. with mean value " << endl; |
---|
518 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
519 | cout << endl; |
---|
520 | } |
---|
521 | ifs.close(); |
---|
522 | |
---|
523 | |
---|
524 | calibFileName = directoryName + "/" |
---|
525 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
526 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
527 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
528 | ifs.open(calibFileName.c_str()); |
---|
529 | if ( ! ifs.is_open() ) { |
---|
530 | throw calibFileName + " cannot be opened..."; |
---|
531 | } |
---|
532 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
533 | if(para.debuglev_>9){ |
---|
534 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
535 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
536 | cout << endl; |
---|
537 | } |
---|
538 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
539 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
540 | {//Compute the mean |
---|
541 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
542 | double mean,sigma; |
---|
543 | MeanSigma(coef,mean,sigma); |
---|
544 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
545 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
546 | } |
---|
547 | if(para.debuglev_>9){ |
---|
548 | cout << "Fill calib. with mean value " << endl; |
---|
549 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
550 | cout << endl; |
---|
551 | } |
---|
552 | |
---|
553 | ifs.close(); |
---|
554 | |
---|
555 | //link <cycle> - <calibration coefficient> |
---|
556 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
557 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
558 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
559 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
560 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
561 | |
---|
562 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
563 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
564 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
565 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
566 | |
---|
567 | //per Run based BAO coefficients |
---|
568 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
569 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
570 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
571 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
572 | |
---|
573 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
574 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
575 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
576 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
577 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
578 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
579 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
580 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
581 | }//eo loop on coef Off |
---|
582 | |
---|
583 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
584 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
585 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
586 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
587 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
588 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
589 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
590 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
591 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
592 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
593 | }//eo loop on coef On |
---|
594 | |
---|
595 | //Loop on cyles |
---|
596 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
597 | |
---|
598 | //Look if the cycle has been calibrated... |
---|
599 | bool isCycleCalibrated = |
---|
600 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
601 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
602 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
603 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
604 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
605 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
606 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
607 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
608 | |
---|
609 | if(para.debuglev_>9) { |
---|
610 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
611 | if (isCycleCalibrated) { |
---|
612 | cout << "Cycle calibrated " << endl; |
---|
613 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
614 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
615 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
616 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
617 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
618 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
619 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
620 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
621 | } else { |
---|
622 | cout << "Cycle NOT calibrated " << endl; |
---|
623 | } |
---|
624 | }//debug |
---|
625 | |
---|
626 | |
---|
627 | if ( ! isCycleCalibrated ) continue; |
---|
628 | |
---|
629 | string ppftag; |
---|
630 | //load ON phase |
---|
631 | stringstream cycle; |
---|
632 | cycle << *ic; |
---|
633 | |
---|
634 | ppftag = "specRawOn"+cycle.str(); |
---|
635 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
636 | fin.GetObject(aSpecOn,ppftag); |
---|
637 | |
---|
638 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
639 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
640 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
641 | |
---|
642 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
643 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
644 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
645 | |
---|
646 | ppftag = "specRawOff"+cycle.str(); |
---|
647 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
648 | fin.GetObject(aSpecOff,ppftag); |
---|
649 | |
---|
650 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
651 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
652 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
653 | |
---|
654 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
655 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
656 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
657 | |
---|
658 | |
---|
659 | //Perform the difference ON-OFF with the different calibration options |
---|
660 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
661 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
662 | |
---|
663 | //JEC 29/10/11 add ON-OFF/OFF |
---|
664 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
665 | TMatrix<r_4> aSpecOffFitltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
666 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
667 | medianFiltering(aSpecOff,halfWidth,aSpecOffFitltered); |
---|
668 | |
---|
669 | diffOnOffOvOff_noCalib.Div(aSpecOffFitltered); //division in place |
---|
670 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
671 | |
---|
672 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
673 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
674 | |
---|
675 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
676 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
677 | |
---|
678 | // |
---|
679 | totalNumberCycles++; |
---|
680 | //Fill NTuple |
---|
681 | xnt[0] = totalNumberCycles; |
---|
682 | |
---|
683 | //Follow up arround the Calibration Freq. |
---|
684 | TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
685 | meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib); |
---|
686 | xnt[1] = meanInRange_CalibFreq_noCalib(0); |
---|
687 | xnt[2] = meanInRange_CalibFreq_noCalib(1); |
---|
688 | |
---|
689 | TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
690 | meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib); |
---|
691 | xnt[3] = meanInRange_CalibFreq_perRunCalib(0); |
---|
692 | xnt[4] = meanInRange_CalibFreq_perRunCalib(1); |
---|
693 | |
---|
694 | TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
695 | meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib); |
---|
696 | xnt[5] = meanInRange_CalibFreq_perCycleCalib(0); |
---|
697 | xnt[6] = meanInRange_CalibFreq_perCycleCalib(1); |
---|
698 | |
---|
699 | |
---|
700 | //Follow up arround the 1420.4MHz Freq. |
---|
701 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
702 | meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
703 | xnt[7] = meanInRange_1420Freq_noCalib(0); |
---|
704 | xnt[8] = meanInRange_1420Freq_noCalib(1); |
---|
705 | |
---|
706 | TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
707 | meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib); |
---|
708 | xnt[9] = meanInRange_1420Freq_perRunCalib(0); |
---|
709 | xnt[10] = meanInRange_1420Freq_perRunCalib(1); |
---|
710 | |
---|
711 | TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
712 | meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib); |
---|
713 | xnt[11] = meanInRange_1420Freq_perCycleCalib(0); |
---|
714 | xnt[12] = meanInRange_1420Freq_perCycleCalib(1); |
---|
715 | |
---|
716 | |
---|
717 | //Follow up below the 1420.4MHz Freq. |
---|
718 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
719 | meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
720 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
721 | meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
722 | |
---|
723 | xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
724 | xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
725 | |
---|
726 | |
---|
727 | TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS); |
---|
728 | meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun); |
---|
729 | TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS); |
---|
730 | meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun); |
---|
731 | |
---|
732 | xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.; |
---|
733 | xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.; |
---|
734 | |
---|
735 | |
---|
736 | TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
737 | meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle); |
---|
738 | TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
739 | meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle); |
---|
740 | |
---|
741 | xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.; |
---|
742 | xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.; |
---|
743 | |
---|
744 | |
---|
745 | //JEC 25/10/11 follow 1400-1420 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
746 | TVector<r_4> meanInRange_1400a1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
747 | meanInRange(diffOnOff_noCalib,ch1400,ch1420,meanInRange_1400a1420Freq_noCalib); |
---|
748 | xnt[19] = meanInRange_1400a1420Freq_noCalib(0); |
---|
749 | xnt[20] = meanInRange_1400a1420Freq_noCalib(1); |
---|
750 | |
---|
751 | |
---|
752 | |
---|
753 | //store infos to Ntuple |
---|
754 | onoffevolution.Fill(xnt); |
---|
755 | |
---|
756 | //Quit if enough |
---|
757 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
758 | |
---|
759 | }//eo loop on cycles |
---|
760 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
761 | |
---|
762 | }//eo loop on spectra in a file |
---|
763 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
764 | //Normalisation |
---|
765 | if(totalNumberCycles > 0){ |
---|
766 | //JEC 29/10 add ON-OFF/OFF |
---|
767 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
768 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
769 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
770 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
771 | } |
---|
772 | |
---|
773 | //Compute the reduced version of the mean and sigma |
---|
774 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
775 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
776 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
777 | |
---|
778 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
779 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
780 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
781 | |
---|
782 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
783 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
784 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
785 | |
---|
786 | {//save the results |
---|
787 | stringstream tmp; |
---|
788 | tmp << totalNumberCycles; |
---|
789 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
790 | |
---|
791 | POutPersist fos(fileName); |
---|
792 | cout << "Save output in " << fileName << endl; |
---|
793 | |
---|
794 | string tag = "meanNoCalib"; |
---|
795 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
796 | |
---|
797 | //JEC 29/10/11 |
---|
798 | tag = "meanOvOffNoCalib"; |
---|
799 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
800 | |
---|
801 | tag = "meanPerRunCalib"; |
---|
802 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
803 | tag = "meanPerCycleCalib"; |
---|
804 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
805 | |
---|
806 | tag = "redmeanNoCalib"; |
---|
807 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
808 | tag = "redsigmaNoCalib"; |
---|
809 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
810 | |
---|
811 | tag = "redmeanPerRunCalib"; |
---|
812 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
813 | tag = "redsigmaPerRunCalib"; |
---|
814 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
815 | |
---|
816 | tag = "redmeanPerCycleCalib"; |
---|
817 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
818 | tag = "redsigmaPerCycleCalib"; |
---|
819 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
820 | |
---|
821 | tag = "onoffevol"; |
---|
822 | fos << PPFNameTag(tag) << onoffevolution; |
---|
823 | }//end of save |
---|
824 | } |
---|
825 | //------------------------------------------------------- |
---|
826 | //Compute the mean of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
827 | //Used like: |
---|
828 | // |
---|
829 | void meanRawDiffOnOffCycles() throw(string) { |
---|
830 | list<string> listOfFiles; |
---|
831 | string directoryName; |
---|
832 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
833 | |
---|
834 | //Make the listing of the directory |
---|
835 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
836 | |
---|
837 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
838 | iFileEnd = listOfFiles.end(); |
---|
839 | |
---|
840 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
841 | TMatrix<r_4> meanOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
842 | uint_4 nSpectra=0; |
---|
843 | //Loop on files |
---|
844 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
845 | if (para.debuglev_>90){ |
---|
846 | cout << "load file <" << *iFile << ">" << endl; |
---|
847 | } |
---|
848 | PInPersist fin(*iFile); |
---|
849 | vector<string> vec = fin.GetNameTags(); |
---|
850 | list<string> listOfSpectra; |
---|
851 | //Keep only required PPF objects |
---|
852 | std::remove_copy_if( |
---|
853 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
854 | not1(match) |
---|
855 | ); |
---|
856 | |
---|
857 | listOfSpectra.sort(stringCompare); |
---|
858 | iSpecEnd = listOfSpectra.end(); |
---|
859 | //Loop of spectra matrix |
---|
860 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd; ++iSpec){ |
---|
861 | if (para.debuglev_>90){ |
---|
862 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
863 | } |
---|
864 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
865 | fin.GetObject(aSpec,*iSpec); |
---|
866 | //How to see if the GetObject is ok?? Ask Reza |
---|
867 | nSpectra++; |
---|
868 | meanOfSpectra+=aSpec; |
---|
869 | }//eo loop on spectra in a file |
---|
870 | }//eo loop on files |
---|
871 | |
---|
872 | //Normalisation |
---|
873 | if(nSpectra>0)meanOfSpectra/=(r_4)(nSpectra); |
---|
874 | |
---|
875 | //Compute the reduced version of the mean and sigma |
---|
876 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
877 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
878 | reduceSpectra(meanOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
879 | |
---|
880 | {//Save the result |
---|
881 | stringstream tmp; |
---|
882 | tmp << nSpectra; |
---|
883 | string fileName = para.outPath_+"/meanDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
884 | cout << "Save mean based on " << nSpectra << " cycles " << endl; |
---|
885 | POutPersist fos(fileName); |
---|
886 | |
---|
887 | string tag = "mean"; |
---|
888 | fos << PPFNameTag(tag) << meanOfSpectra; |
---|
889 | tag = "meanred"; |
---|
890 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
891 | tag = "sigmared"; |
---|
892 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
893 | } |
---|
894 | } |
---|
895 | //------------------------------------------------------- |
---|
896 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
897 | //Used like: |
---|
898 | // |
---|
899 | void medianRawDiffOnOffCycles() throw(string) { |
---|
900 | list<string> listOfFiles; |
---|
901 | string directoryName; |
---|
902 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
903 | |
---|
904 | //Make the listing of the directory |
---|
905 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
906 | |
---|
907 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
908 | iFileEnd = listOfFiles.end(); |
---|
909 | |
---|
910 | |
---|
911 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
912 | |
---|
913 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
914 | uint_4 nSpectra=0; |
---|
915 | //Loop on files |
---|
916 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
917 | if (para.debuglev_>90){ |
---|
918 | cout << "load file <" << *iFile << ">" << endl; |
---|
919 | } |
---|
920 | PInPersist fin(*iFile); |
---|
921 | vector<string> vec = fin.GetNameTags(); |
---|
922 | list<string> listOfSpectra; |
---|
923 | //Keep only required PPF objects |
---|
924 | std::remove_copy_if( |
---|
925 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
926 | not1(match) |
---|
927 | ); |
---|
928 | |
---|
929 | listOfSpectra.sort(stringCompare); |
---|
930 | iSpecEnd = listOfSpectra.end(); |
---|
931 | //Loop of spectra matrix |
---|
932 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
933 | if (para.debuglev_>90){ |
---|
934 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
935 | } |
---|
936 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
937 | fin.GetObject(aSpec,*iSpec); |
---|
938 | |
---|
939 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
940 | |
---|
941 | nSpectra++; |
---|
942 | }//eo loop on spectra in a file |
---|
943 | }//eo loop on files |
---|
944 | |
---|
945 | |
---|
946 | |
---|
947 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
948 | //Compute the median for each freq. and Channel |
---|
949 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
950 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
951 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
952 | vector<r_4> tmp; |
---|
953 | tmp0.FillTo(tmp); |
---|
954 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
955 | } |
---|
956 | } |
---|
957 | |
---|
958 | |
---|
959 | //Compute the reduced version of the mean and sigma |
---|
960 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
961 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
962 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
963 | |
---|
964 | |
---|
965 | sa_size_t f1320=freqToChan(1320.); |
---|
966 | sa_size_t f1345=freqToChan(1345.); |
---|
967 | sa_size_t f1355=freqToChan(1355.); |
---|
968 | sa_size_t f1380=freqToChan(1380.); |
---|
969 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
970 | if (para.debuglev_>9){ |
---|
971 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
972 | } |
---|
973 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
974 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
975 | double meanMed1; |
---|
976 | double sigmaMed1; |
---|
977 | TVector<r_4> band1; |
---|
978 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
979 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
980 | double meanMed2; |
---|
981 | double sigmaMed2; |
---|
982 | TVector<r_4> band2; |
---|
983 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
984 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
985 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
986 | } |
---|
987 | meanMed.Print(cout); |
---|
988 | cout << endl; |
---|
989 | |
---|
990 | |
---|
991 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
992 | if (para.debuglev_>9){ |
---|
993 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
994 | } |
---|
995 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
996 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
997 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
998 | |
---|
999 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1000 | double meanSigma; |
---|
1001 | double sigmaSigma; |
---|
1002 | TVector<r_4> band; |
---|
1003 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
1004 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
1005 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
1006 | sigmaMed(iCh) = meanSigma; |
---|
1007 | } |
---|
1008 | sigmaMed.Print(cout); |
---|
1009 | cout << endl; |
---|
1010 | |
---|
1011 | |
---|
1012 | |
---|
1013 | if (para.debuglev_>9){ |
---|
1014 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
1015 | } |
---|
1016 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
1017 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1018 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
1019 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
1020 | } |
---|
1021 | |
---|
1022 | |
---|
1023 | |
---|
1024 | {//Save the result |
---|
1025 | stringstream tmp; |
---|
1026 | tmp << nSpectra; |
---|
1027 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1028 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
1029 | POutPersist fos(fileName); |
---|
1030 | |
---|
1031 | string tag = "median"; |
---|
1032 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
1033 | |
---|
1034 | tag = "medianNorm"; |
---|
1035 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
1036 | |
---|
1037 | |
---|
1038 | tag = "meanmedred"; |
---|
1039 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
1040 | tag = "sigmamedred"; |
---|
1041 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
1042 | tag = "cycleVsfreq"; |
---|
1043 | |
---|
1044 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
1045 | fos << PPFNameTag(tag) << tarr; |
---|
1046 | } |
---|
1047 | } |
---|
1048 | |
---|
1049 | //------------------------------------------------------- |
---|
1050 | int main(int narg, char* arg[]) { |
---|
1051 | |
---|
1052 | int rc = 0; //return code |
---|
1053 | string msg; //message used in Exceptions |
---|
1054 | |
---|
1055 | |
---|
1056 | |
---|
1057 | //default value for initial parameters (see Para structure on top of the file) |
---|
1058 | string debuglev = "0"; |
---|
1059 | string action = "meanDiffOnOff"; |
---|
1060 | string inputPath = "."; |
---|
1061 | string outputPath = "."; |
---|
1062 | string sourceName = "Abell85"; |
---|
1063 | string ppfFile; |
---|
1064 | string nSliceInFreq = "32"; |
---|
1065 | string typeOfCalib="perRun"; |
---|
1066 | string calibFreq = "1346"; |
---|
1067 | string calibBandFreq="6.25"; |
---|
1068 | string mxcycles; |
---|
1069 | |
---|
1070 | // bool okarg=false; |
---|
1071 | int ka=1; |
---|
1072 | while (ka<narg) { |
---|
1073 | if (strcmp(arg[ka],"-h")==0) { |
---|
1074 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
1075 | << " -mxcycles <number> (max. number of cycles to be treated)\n" |
---|
1076 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
1077 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
1078 | << " -src [Abell85]\n" |
---|
1079 | << " -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
1080 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
1081 | << " -outPath [.]|<dir of the output> \n" |
---|
1082 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
1083 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
1084 | << " -debug <level> " |
---|
1085 | << endl; |
---|
1086 | return 0; |
---|
1087 | } |
---|
1088 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
1089 | debuglev=arg[ka+1]; |
---|
1090 | ka+=2; |
---|
1091 | } |
---|
1092 | else if (strcmp(arg[ka],"-act")==0) { |
---|
1093 | action=arg[ka+1]; |
---|
1094 | ka+=2; |
---|
1095 | } |
---|
1096 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
1097 | calibFreq=arg[ka+1]; |
---|
1098 | ka+=2; |
---|
1099 | } |
---|
1100 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
1101 | calibBandFreq=arg[ka+1]; |
---|
1102 | ka+=2; |
---|
1103 | } |
---|
1104 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
1105 | mxcycles=arg[ka+1]; |
---|
1106 | ka+=2; |
---|
1107 | } |
---|
1108 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
1109 | inputPath=arg[ka+1]; |
---|
1110 | ka+=2; |
---|
1111 | } |
---|
1112 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
1113 | outputPath=arg[ka+1]; |
---|
1114 | ka+=2; |
---|
1115 | } |
---|
1116 | else if (strcmp(arg[ka],"-src")==0) { |
---|
1117 | sourceName=arg[ka+1]; |
---|
1118 | ka+=2; |
---|
1119 | } |
---|
1120 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
1121 | ppfFile=arg[ka+1]; |
---|
1122 | ka+=2; |
---|
1123 | } |
---|
1124 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
1125 | nSliceInFreq=arg[ka+1]; |
---|
1126 | ka+=2; |
---|
1127 | } |
---|
1128 | else ka++; |
---|
1129 | }//eo while |
---|
1130 | |
---|
1131 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
1132 | para.inPath_ = inputPath; |
---|
1133 | para.outPath_ = outputPath; |
---|
1134 | para.sourceName_ = sourceName; |
---|
1135 | para.ppfFile_ = ppfFile; |
---|
1136 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
1137 | para.calibFreq_ = calibFreq; |
---|
1138 | para.calibBandFreq_ = calibBandFreq; |
---|
1139 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
1140 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
1141 | if (mxcycles != "") { |
---|
1142 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
1143 | } else { |
---|
1144 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
1145 | } |
---|
1146 | |
---|
1147 | cout << "Dump Initial parameters ............" << endl; |
---|
1148 | cout << " action = " << action << "\n" |
---|
1149 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
1150 | << " inputPath = " << para.inPath_ << "\n" |
---|
1151 | << " outputPath = " << para.outPath_ << "\n" |
---|
1152 | << " sourceName = " << para.sourceName_ << "\n" |
---|
1153 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
1154 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
1155 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
1156 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
1157 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
1158 | cout << "...................................." << endl; |
---|
1159 | |
---|
1160 | if ( "" == ppfFile ) { |
---|
1161 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
1162 | << endl; |
---|
1163 | return 999; |
---|
1164 | } |
---|
1165 | |
---|
1166 | |
---|
1167 | try { |
---|
1168 | |
---|
1169 | // int b,e; |
---|
1170 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
1171 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
1172 | |
---|
1173 | if ( action == "meanRawDiffOnOff" ) { |
---|
1174 | meanRawDiffOnOffCycles(); |
---|
1175 | } else if (action == "medianRawDiffOnOff") { |
---|
1176 | medianRawDiffOnOffCycles(); |
---|
1177 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
1178 | meanCalibBAODiffOnOffCycles(); |
---|
1179 | } else { |
---|
1180 | msg = "Unknown action " + action; |
---|
1181 | throw msg; |
---|
1182 | } |
---|
1183 | |
---|
1184 | |
---|
1185 | } catch (std::exception& sex) { |
---|
1186 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
1187 | << "\n msg= " << sex.what() << endl; |
---|
1188 | rc = 78; |
---|
1189 | } |
---|
1190 | catch ( string str ) { |
---|
1191 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
1192 | } |
---|
1193 | catch (...) { |
---|
1194 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
1195 | rc = 79; |
---|
1196 | } |
---|
1197 | |
---|
1198 | return 0; |
---|
1199 | |
---|
1200 | } |
---|