| 1 | #!/bin/sh -xvf
|
|---|
| 2 | #Perform the ON-OFF analysis
|
|---|
| 3 | DATE=/bin/date
|
|---|
| 4 | GREP=/bin/grep
|
|---|
| 5 | AWK=/bin/awk
|
|---|
| 6 | ECHO=/bin/echo
|
|---|
| 7 | WC=/usr/bin/wc
|
|---|
| 8 | CAT=/bin/cat
|
|---|
| 9 | PRINTF=/usr/bin/printf
|
|---|
| 10 | FIND=/usr/bin/find
|
|---|
| 11 | MKDIR=/bin/mkdir
|
|---|
| 12 | XARGS=/usr/bin/xargs
|
|---|
| 13 | SORT=/bin/sort
|
|---|
| 14 | RM=/bin/rm
|
|---|
| 15 | TR=/usr/bin/tr
|
|---|
| 16 | CP=/bin/cp
|
|---|
| 17 | LS=/bin/ls
|
|---|
| 18 | CHMOD=/bin/chmod
|
|---|
| 19 |
|
|---|
| 20 | DefaultIFS=$' \t\n'
|
|---|
| 21 | IFS=$DefaultIFS
|
|---|
| 22 |
|
|---|
| 23 | #set Irods environment
|
|---|
| 24 | . /usr/local/shared/bin/irods_env.sh -noverbose
|
|---|
| 25 |
|
|---|
| 26 | scriptName="`basename $0`"
|
|---|
| 27 | $ECHO "Processing script ${scriptName} at `date`"
|
|---|
| 28 | #which source to analyse
|
|---|
| 29 |
|
|---|
| 30 | #Process cmd line args: the -src option is mandatory (source name as Abell85)
|
|---|
| 31 | sourceRadio=
|
|---|
| 32 | dateSelected=
|
|---|
| 33 | freqBAOCalib=1346
|
|---|
| 34 | #use -sim option to simulate processing (debug the script as if...)
|
|---|
| 35 | simulationMode=Off
|
|---|
| 36 | while [ $# -gt 0 ]
|
|---|
| 37 | do
|
|---|
| 38 | case "$1" in
|
|---|
| 39 | -src) sourceRadio=$2; shift;;
|
|---|
| 40 | -date) dateSelected=$2; shift;;
|
|---|
| 41 | -freq) freqBAOCalib=$2; shift;;
|
|---|
| 42 | -sim) simulationMode=On;;
|
|---|
| 43 | -h)
|
|---|
| 44 | echo >&2 \
|
|---|
| 45 | "usage: $0 -src souce -date YYYYMMDD [-freq freq in MHz (default ${freqBAOCalib})] [-sim to trig simulation mode]"
|
|---|
| 46 | exit 1;;
|
|---|
| 47 | *) break;; # terminate while loop
|
|---|
| 48 | esac
|
|---|
| 49 | shift
|
|---|
| 50 | done
|
|---|
| 51 |
|
|---|
| 52 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 53 | $ECHO "INFO ${scriptName} running in SIMUL mode"
|
|---|
| 54 | fi
|
|---|
| 55 |
|
|---|
| 56 | if [ "<${sourceRadio}>" = "<>" ]; then
|
|---|
| 57 | $ECHO "FATAL: You have forgotten to select the source option (-src)"
|
|---|
| 58 | exit 1
|
|---|
| 59 | fi
|
|---|
| 60 |
|
|---|
| 61 | case ${sourceRadio} in
|
|---|
| 62 | Abell85) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 63 | Abell2440) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 64 | Abell1205) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
|
|---|
| 65 | *) ECHO "FATAL (${scriptName}): process ${sourceRadio} not yet foreseen"
|
|---|
| 66 | exit 1;;
|
|---|
| 67 | esac
|
|---|
| 68 |
|
|---|
| 69 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" `
|
|---|
| 70 |
|
|---|
| 71 | #Path to public backupable path
|
|---|
| 72 | publicpath="/afs/in2p3.fr/home/c/campagne/public"
|
|---|
| 73 |
|
|---|
| 74 |
|
|---|
| 75 | #temporary files to synchronize scripts
|
|---|
| 76 | tmppublicpath=${TMPPUBLICPATH}
|
|---|
| 77 | #wakeup the NFS disk
|
|---|
| 78 | $LS -l ${tmppublicpath} > /dev/null
|
|---|
| 79 | #clean previous spurious files
|
|---|
| 80 | $RM -f ${tmppublicpath}/*.finished
|
|---|
| 81 |
|
|---|
| 82 | #Path where the job will do temporary IO
|
|---|
| 83 | . ${SCRIPTPATH}/isInteractive.sh
|
|---|
| 84 | isInteractive=$(isInteractive)
|
|---|
| 85 | if [ ${isInteractive} == "1" ]; then
|
|---|
| 86 | $ECHO "Usage in INTERACTIVE may be destructive... To be used with great care !!!!"
|
|---|
| 87 | exit 0;
|
|---|
| 88 | fi
|
|---|
| 89 |
|
|---|
| 90 | . ${SCRIPTPATH}/set_iojobpath.sh
|
|---|
| 91 | iojobpath=$(set_iojobpath)
|
|---|
| 92 | cd ${iojobpath}
|
|---|
| 93 |
|
|---|
| 94 | localpath="${sourceRadio}"
|
|---|
| 95 | $MKDIR -p ./${localpath}
|
|---|
| 96 | cd ./${localpath}
|
|---|
| 97 |
|
|---|
| 98 | #save the top directory
|
|---|
| 99 | topDir=`pwd`
|
|---|
| 100 |
|
|---|
| 101 | #Path of the utility scripts
|
|---|
| 102 | scriptpath=${SCRIPTPATH}
|
|---|
| 103 |
|
|---|
| 104 | #JEC 1/10/11 Use generic baodaqstatus name
|
|---|
| 105 | #get the daq current irod status
|
|---|
| 106 | #tag=`${DATE} +%F`
|
|---|
| 107 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt
|
|---|
| 108 | OUT1=${publicpath}/baodaqstatus-current.txt
|
|---|
| 109 |
|
|---|
| 110 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then
|
|---|
| 111 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem"
|
|---|
| 112 | exit 1
|
|---|
| 113 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
|
|---|
| 114 | # $RM -f ${tmppublicpath}/statusdaq.finished
|
|---|
| 115 | # ${scriptpath}/statusdaq.sh > ${OUT1}
|
|---|
| 116 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
|
|---|
| 117 | # sleep 30
|
|---|
| 118 | # done
|
|---|
| 119 | # $RM ${tmppublicpath}/statusdaq.finished
|
|---|
| 120 | #protect against remove/rewriting
|
|---|
| 121 | # $CHMOD -v 444 ${OUT1}
|
|---|
| 122 | fi
|
|---|
| 123 |
|
|---|
| 124 |
|
|---|
| 125 | #Nb: if we want to implement a loop on sources we have to take care of srclower...
|
|---|
| 126 |
|
|---|
| 127 | $ECHO "You have selected sourceRadio = ${sourceRadio} [date = ${dateSelected}]"
|
|---|
| 128 | tableau=( `$GREP -i "${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` )
|
|---|
| 129 | IFS='
|
|---|
| 130 | '
|
|---|
| 131 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 132 | IFS=$DefaultIFS
|
|---|
| 133 |
|
|---|
| 134 |
|
|---|
| 135 | for i in ${tableau[@]}
|
|---|
| 136 | do
|
|---|
| 137 | #
|
|---|
| 138 | # start a "fresh" session
|
|---|
| 139 | cd ${topDir}
|
|---|
| 140 | $LS | $XARGS -i $RM -rf {}
|
|---|
| 141 |
|
|---|
| 142 | $ECHO "DEBUG: (${scriptName}) irods root dir $i"
|
|---|
| 143 | dateDAQ=`$ECHO ${i} | $AWK '{split($0,a,"/"); print a[6];}' | $AWK "{sub(/${srclower}/,\"\"); print}"`
|
|---|
| 144 |
|
|---|
| 145 | $ECHO "DEBUG: (${scriptName}): we are in directory `pwd` the topDir=${topDir}"
|
|---|
| 146 | $LS -lrt
|
|---|
| 147 |
|
|---|
| 148 |
|
|---|
| 149 | #JEC 1/10/11 Use generic baodaqstatus name
|
|---|
| 150 | #Look if the date has changed since beginning of the job!
|
|---|
| 151 | # curtag=`${DATE} +%F`
|
|---|
| 152 | # if [ "<${curtag}>" != "<${tag}>" ]; then
|
|---|
| 153 | # tag=${curtag}
|
|---|
| 154 | #it is necessary to update the daq status as the day has changed during the processing... (batch can take a long time...)
|
|---|
| 155 | # OUT1=${publicpath}/baodaqstatus-${curtag}.txt
|
|---|
| 156 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
|
|---|
| 157 | # $RM -f ${tmppublicpath}/statusdaq.finished
|
|---|
| 158 | # ${scriptpath}/statusdaq.sh > ${OUT1}
|
|---|
| 159 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
|
|---|
| 160 | # sleep 30
|
|---|
| 161 | # done
|
|---|
| 162 | # $RM ${tmppublicpath}/statusdaq.finished
|
|---|
| 163 | #protect against remove/rewriting
|
|---|
| 164 | # $CHMOD -v 444 ${OUT1}
|
|---|
| 165 | # fi
|
|---|
| 166 | #
|
|---|
| 167 | # look if the gain & calibration files exist
|
|---|
| 168 | #
|
|---|
| 169 | gainDone=`ils ${i} 2>&1 | $GREP -i "gain_.*\.fits" | $WC -l`
|
|---|
| 170 | if [ ! ${gainDone} -gt 0 ]; then
|
|---|
| 171 | $ECHO "FATAL (${scriptName}): gain file DOES NOT exist skip `basename $i` "
|
|---|
| 172 | continue
|
|---|
| 173 | fi
|
|---|
| 174 |
|
|---|
| 175 | calibDone=`ils ${i} 2>&1 | $GREP -i "calib_.*\.txt" | $WC -l`
|
|---|
| 176 | if [ ! ${calibDone} -gt 0 ]; then
|
|---|
| 177 | $ECHO "FATAL (${scriptName}): calibration files DO NOT exist skip `basename $i` "
|
|---|
| 178 | continue
|
|---|
| 179 | fi
|
|---|
| 180 | #
|
|---|
| 181 | somethingTodo=1
|
|---|
| 182 | input4dataOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
|
|---|
| 183 | input4dataOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
|
|---|
| 184 | #
|
|---|
| 185 | if [ "<${input4dataOff}>" != "<>" -a "<${input4dataOn}>" != "<>" ]; then
|
|---|
| 186 | #look at the content of the datacycle directory as may be the previous batch job has crashed
|
|---|
| 187 | tableauOff=( `$ECHO ${input4dataOff}` )
|
|---|
| 188 | IFS='
|
|---|
| 189 | '
|
|---|
| 190 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 191 | IFS=$DefaultIFS
|
|---|
| 192 | #
|
|---|
| 193 | nTotFilesOff=0
|
|---|
| 194 | for j in ${tableauOff[@]}
|
|---|
| 195 | do
|
|---|
| 196 | nFiles=`ils ${i}/Off/${j} | $GREP -i "medfiltmtx" | $WC -l`
|
|---|
| 197 | nTotFilesOff=`expr ${nTotFilesOff} + ${nFiles}`
|
|---|
| 198 | done
|
|---|
| 199 | #
|
|---|
| 200 | tableauOn=( `$ECHO ${input4dataOn}` )
|
|---|
| 201 | IFS='
|
|---|
| 202 | '
|
|---|
| 203 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 204 | IFS=$DefaultIFS
|
|---|
| 205 | #
|
|---|
| 206 | nTotFilesOn=0
|
|---|
| 207 | for j in ${tableauOn[@]}
|
|---|
| 208 | do
|
|---|
| 209 | nFiles=`ils ${i}/On/${j} | $GREP -i "medfiltmtx" | $WC -l`
|
|---|
| 210 | nTotFilesOn=`expr ${nTotFilesOn} + ${nFiles}`
|
|---|
| 211 | done
|
|---|
| 212 | diffOnOff=`expr ${nTotFilesOff} - ${nTotFilesOn}`
|
|---|
| 213 | if [ ${diffOnOff} -lt 0 ]; then
|
|---|
| 214 | zero=0
|
|---|
| 215 | diffOnOff=`expr ${zero} - ${diffOnOff}`
|
|---|
| 216 | fi
|
|---|
| 217 | #allow files differences
|
|---|
| 218 | if [ ${nTotFilesOff} -gt 0 -a ${nTotFilesOn} -gt 0 ]; then
|
|---|
| 219 | somethingTodo=0
|
|---|
| 220 | $ECHO "DEBUG (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files but OK"
|
|---|
| 221 | else
|
|---|
| 222 | $ECHO "INFO (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files => one should rebuild has something is wrong"
|
|---|
| 223 | fi
|
|---|
| 224 | #
|
|---|
| 225 | fi
|
|---|
| 226 | if [ ${somethingTodo} -eq 1 ]; then
|
|---|
| 227 | #
|
|---|
| 228 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ANALOFF"
|
|---|
| 229 | $RM -f ${tmppublicpath}/proc_script.finished
|
|---|
| 230 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 231 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF"
|
|---|
| 232 | else
|
|---|
| 233 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF
|
|---|
| 234 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
|
|---|
| 235 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
|
|---|
| 236 | date +%T
|
|---|
| 237 | sleep 60
|
|---|
| 238 | done
|
|---|
| 239 | fi
|
|---|
| 240 | $ECHO "INFO (${scriptName}): proc_script has finished"
|
|---|
| 241 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ OFF"
|
|---|
| 242 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ON"
|
|---|
| 243 | $RM ${tmppublicpath}/proc_script.finished
|
|---|
| 244 |
|
|---|
| 245 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 246 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON"
|
|---|
| 247 | else
|
|---|
| 248 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON
|
|---|
| 249 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
|
|---|
| 250 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
|
|---|
| 251 | date +%T
|
|---|
| 252 | sleep 60
|
|---|
| 253 | done
|
|---|
| 254 | fi
|
|---|
| 255 | $ECHO "INFO (${scriptName}): proc_script has finished"
|
|---|
| 256 | $RM ${tmppublicpath}/proc_script.finished
|
|---|
| 257 | #Todo see if there is errors in the log file before copy
|
|---|
| 258 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ ON"
|
|---|
| 259 | ######
|
|---|
| 260 | else
|
|---|
| 261 | ######
|
|---|
| 262 | $ECHO ">>>>>>>>>>>>> ANALYSIS Part of ${sourceRadio} ${dateDAQ}"
|
|---|
| 263 | #go to the .../source/date-sourcelowercase directory
|
|---|
| 264 | #download Off/datacycle<> and On/datacycle<> directories
|
|---|
| 265 | $MKDIR -p ${topDir}/${dateDAQ}${srclower}
|
|---|
| 266 | cd ${topDir}/${dateDAQ}${srclower}
|
|---|
| 267 | aboveOnOffDir=`pwd`
|
|---|
| 268 | $ECHO "DEBUG (${scriptName}): we are in directory: <`pwd`>"
|
|---|
| 269 | #
|
|---|
| 270 | mode="Off"
|
|---|
| 271 | $ECHO "DEBUG (${scriptName}): START download the ${mode} data fits files"
|
|---|
| 272 | inFileDirectory="./${mode}"
|
|---|
| 273 | $MKDIR -p ${inFileDirectory}
|
|---|
| 274 | listOfDataCycle=( `ils ${i}/${mode} 2>&1 | $GREP -i "datacycle"|$AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n` )
|
|---|
| 275 | IFS='
|
|---|
| 276 | '
|
|---|
| 277 | listOfDataCycle=( $( $PRINTF "%s\n" "${listOfDataCycle[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 278 | IFS=$DefaultIFS
|
|---|
| 279 |
|
|---|
| 280 | firstCycleOff=`$ECHO ${listOfDataCycle[0]} | $AWK '{match($0,"[0-9]+",arr); print arr[0]}'`
|
|---|
| 281 | nCyclesOff=`expr ${#listOfDataCycle[*]} - 1`
|
|---|
| 282 |
|
|---|
| 283 | lastCycleOff=`$ECHO ${listOfDataCycle[${nCyclesOff}]} | $AWK '{match($0,"[0-9]+",arr); print arr[0]}'`
|
|---|
| 284 |
|
|---|
| 285 | listOfDataCycle=( "${listOfDataCycle[@]/#/${i}/${mode}/}" )
|
|---|
| 286 |
|
|---|
| 287 |
|
|---|
| 288 | for j in ${listOfDataCycle[@]}
|
|---|
| 289 | do
|
|---|
| 290 | irodsDownDir="${j}"
|
|---|
| 291 | OUT=./getInFits.$$
|
|---|
| 292 | iget -r -f -K ${irodsDownDir} ${inFileDirectory} > ${OUT} 2>&1
|
|---|
| 293 | igetStatus=`$GREP "^ERROR" ${OUT}`
|
|---|
| 294 | if [ "<$igetStatus>" != "<>" ]; then
|
|---|
| 295 | $ECHO "FATAL (${scriptName}): error while iget fits files:"
|
|---|
| 296 | $ECHO $igetStatus
|
|---|
| 297 | $ECHO " ==> skip this run $sourceRadio $dateDAQ"
|
|---|
| 298 | continue
|
|---|
| 299 | fi
|
|---|
| 300 | $RM -f ${OUT}
|
|---|
| 301 | done
|
|---|
| 302 | $ECHO "DEBUG (${scriptName}): END download the ${mode} data fits files"
|
|---|
| 303 | #
|
|---|
| 304 | mode="On"
|
|---|
| 305 | $ECHO "DEBUG (${scriptName}): START download the ${mode} data fits files"
|
|---|
| 306 | inFileDirectory="./${mode}"
|
|---|
| 307 | $MKDIR -p ${inFileDirectory}
|
|---|
| 308 |
|
|---|
| 309 | listOfDataCycle=( `ils ${i}/${mode} 2>&1 | $GREP -i "datacycle" |$AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n` )
|
|---|
| 310 | IFS='
|
|---|
| 311 | '
|
|---|
| 312 | listOfDataCycle=( $( $PRINTF "%s\n" "${listOfDataCycle[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 313 | IFS=$DefaultIFS
|
|---|
| 314 |
|
|---|
| 315 | firstCycleOn=`$ECHO ${listOfDataCycle[0]} | $AWK '{match($0,"[0-9]+",arr); print arr[0]}'`
|
|---|
| 316 | nCyclesOn=`expr ${#listOfDataCycle[*]} - 1`
|
|---|
| 317 |
|
|---|
| 318 | lastCycleOn=`$ECHO ${listOfDataCycle[${nCyclesOn}]} | $AWK '{match($0,"[0-9]+",arr); print arr[0]}'`
|
|---|
| 319 |
|
|---|
| 320 | listOfDataCycle=( "${listOfDataCycle[@]/#/${i}/${mode}/}" )
|
|---|
| 321 |
|
|---|
| 322 |
|
|---|
| 323 | #
|
|---|
| 324 | #Check if there is the same number of cycles in Off and On mode
|
|---|
| 325 | #
|
|---|
| 326 | #first cycle = max(firstCycleOn, firstCycleOff)
|
|---|
| 327 | #last cycle = min(lastCycleOn,lastCycleOff)
|
|---|
| 328 |
|
|---|
| 329 | if [ ${firstCycleOn} -eq ${firstCycleOff} -a ${lastCycleOn} -eq ${lastCycleOff} ]; then
|
|---|
| 330 | firstCycle=${firstCycleOff}
|
|---|
| 331 | lastCycle=${lastCycleOff}
|
|---|
| 332 | else
|
|---|
| 333 | $ECHO "INFO (${scriptName}): missmatch between Off and On mode"
|
|---|
| 334 | $ECHO "${firstCycleOn} != ${firstCycleOff} OR ${lastCycleOn} != ${lastCycleOff}"
|
|---|
| 335 | firstCycle=${firstCycleOff}
|
|---|
| 336 | if [ ${firstCycleOn} -gt ${firstCycle} ]; then
|
|---|
| 337 | firstCycle=${firstCycleOn}
|
|---|
| 338 | fi
|
|---|
| 339 | lastCycle=${lastCycleOff}
|
|---|
| 340 | if [ ${lastCycleOn} -lt ${lastCycle} ]; then
|
|---|
| 341 | lastCycle=${lastCycleOn}
|
|---|
| 342 | fi
|
|---|
| 343 | fi
|
|---|
| 344 | $ECHO "INFO (${scriptName}): use cycles [${firstCycle}, ${lastCycle}]"
|
|---|
| 345 |
|
|---|
| 346 |
|
|---|
| 347 | for j in ${listOfDataCycle[@]}
|
|---|
| 348 | do
|
|---|
| 349 | irodsDownDir="${j}"
|
|---|
| 350 | OUT=./getInFits.$$
|
|---|
| 351 | iget -r -f -K ${irodsDownDir} ${inFileDirectory} > ${OUT} 2>&1
|
|---|
| 352 | igetStatus=`$GREP "^ERROR" ${OUT}`
|
|---|
| 353 | if [ "<$igetStatus>" != "<>" ]; then
|
|---|
| 354 | $ECHO "FATAL (${scriptName}): error while iget fits files:"
|
|---|
| 355 | $ECHO $igetStatus
|
|---|
| 356 | $ECHO " ==> skip this run $sourceRadio $dateDAQ"
|
|---|
| 357 | continue
|
|---|
| 358 | fi
|
|---|
| 359 | $RM -f ${OUT}
|
|---|
| 360 | done
|
|---|
| 361 | $ECHO "DEBUG (${scriptName}): END download the ${mode} data fits files"
|
|---|
| 362 | #Get sca file
|
|---|
| 363 | $ECHO "DEBUG (${scriptName}): START call getscafiles.sh ${sourceRadio} ${dateDAQ}"
|
|---|
| 364 | OUT1=./getScaStatus.$$
|
|---|
| 365 | $RM -f ${tmppublicpath}/getscafiles.finished
|
|---|
| 366 | ${scriptpath}/getscafiles.sh ${sourceRadio} ${dateDAQ} > ${OUT1} 2>&1
|
|---|
| 367 | while [ ! -f "${tmppublicpath}/getscafiles.finished" ]; do
|
|---|
| 368 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getscafiles.finished"
|
|---|
| 369 | date +%T
|
|---|
| 370 | sleep 30
|
|---|
| 371 | done
|
|---|
| 372 | $RM ${tmppublicpath}/getscafiles.finished
|
|---|
| 373 | $ECHO "DEBUG (${scriptName}): END"
|
|---|
| 374 | #
|
|---|
| 375 | getScaStatus=`$GREP "^\(FATAL\|ERROR\)" ${OUT1}`
|
|---|
| 376 | #
|
|---|
| 377 | if [ "<${getScaStatus}>" != "<>" ]; then
|
|---|
| 378 | $ECHO "FATAL (${scriptName}): error to get sca file for $sourceRadio $dateDAQ"
|
|---|
| 379 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}"
|
|---|
| 380 | $CAT ${OUT1}
|
|---|
| 381 | $ECHO "DEBUG (${scriptName}): END"
|
|---|
| 382 | continue
|
|---|
| 383 | fi
|
|---|
| 384 | $RM -f ${OUT1}
|
|---|
| 385 |
|
|---|
| 386 | scaFile=`$FIND . -name "sca*.sum.trans" | $XARGS -i basename {}`
|
|---|
| 387 |
|
|---|
| 388 |
|
|---|
| 389 | #Get the calibration files
|
|---|
| 390 | OUT2=./calibFiles.$$
|
|---|
| 391 | ils ${i} | ${GREP} -i "calib.*\.txt" > ${OUT2}
|
|---|
| 392 | listeOfCalib=( `$CAT ${OUT2}` )
|
|---|
| 393 | IFS='
|
|---|
| 394 | '
|
|---|
| 395 | listeOfCalib=( $( $PRINTF "%s\n" "${listeOfCalib[@]}" | $AWK 'x[$0]++ == 0' ) )
|
|---|
| 396 | IFS=$DefaultIFS
|
|---|
| 397 | $RM $OUT2
|
|---|
| 398 | for fcal in ${listeOfCalib[@]}
|
|---|
| 399 | do
|
|---|
| 400 | OUT3=./getCalib.$$
|
|---|
| 401 | iget -f -K -v ${i}/${fcal} ${aboveOnOffDir}> ${OUT3} 2>&1
|
|---|
| 402 | igetStatus=`$GREP "^ERROR" ${OUT3}`
|
|---|
| 403 | if [ "<$igetStatus>" != "<>" ]; then
|
|---|
| 404 | $ECHO "FATAL (${scriptName}): error while iget calib files:"
|
|---|
| 405 | $ECHO $igetStatus
|
|---|
| 406 | exit 1
|
|---|
| 407 | fi
|
|---|
| 408 | $RM -f ${OUT3}
|
|---|
| 409 | done
|
|---|
| 410 |
|
|---|
| 411 | #prepare job submission
|
|---|
| 412 | cd ${aboveOnOffDir}
|
|---|
| 413 | #the default spectra name is medfiltmtx, otherwise use -specname <a_string>
|
|---|
| 414 |
|
|---|
| 415 | logFile="analyse_DATA_${sourceRadio}_${dateDAQ}.log"
|
|---|
| 416 | $ECHO "DEBUG (${scriptName}): execute the analysis... should not take long. `date`"
|
|---|
| 417 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 418 | $ECHO "SIMUL: ${scriptpath}/Objs/analyse -act dataOnOff -inPath ${iojobpath} -source ${sourceRadio} -date ${dateDAQ} -sca ${scaFile} -specdir datacycle -numcycle ${firstCycle},${lastCycle} -debuglev 1 -freqBAOCalib ${freqBAOCalib} >& ${logFile}"
|
|---|
| 419 | cat > ${logFile} <<EOF
|
|---|
| 420 | Ok calibration finished
|
|---|
| 421 | EOF
|
|---|
| 422 | else
|
|---|
| 423 | ${scriptpath}/Objs/analyse -act dataOnOff -inPath ${iojobpath} -source ${sourceRadio} -date ${dateDAQ} -sca ${scaFile} -specdir datacycle -numcycle ${firstCycle},${lastCycle} -debuglev 1 -freqBAOCalib ${freqBAOCalib} >& ${logFile}
|
|---|
| 424 | fi
|
|---|
| 425 | $ECHO "DEBUG (${scriptName}): analysis finished `date`. Look for errors before saving to Irods"
|
|---|
| 426 | rcstatus=`$GREP -i "Ok dataOnOff finished" ${logFile} | $WC -l`
|
|---|
| 427 | if [ ${rcstatus} -eq 0 ]; then
|
|---|
| 428 | $ECHO "INFO (${scriptName}): analysis problem for ${sourceRadio} ${dateDAQ}"
|
|---|
| 429 | $ECHO " START logfile"
|
|---|
| 430 | $CAT ${logFile}
|
|---|
| 431 | $ECHO " END logFile"
|
|---|
| 432 | #clean and leave
|
|---|
| 433 | cd ${aboveOnOffDir}
|
|---|
| 434 | $LS | $XARGS -i $RM -rf {}
|
|---|
| 435 | continue
|
|---|
| 436 | fi
|
|---|
| 437 | #Save into Irods
|
|---|
| 438 | $ECHO "DEBUG (${scriptName}): START save output files"
|
|---|
| 439 | $LS ${aboveOnOffDir}
|
|---|
| 440 | #use -f option for iput ONLY to force override
|
|---|
| 441 | if [ ${simulationMode} = "On" ]; then
|
|---|
| 442 | $ECHO "SIMUL: here we look for calib file and put them in Irods"
|
|---|
| 443 | else
|
|---|
| 444 | $LS -lrth
|
|---|
| 445 | $FIND . -name "dataRaw_*" -print | $XARGS -i iput -v -K {} ${i}
|
|---|
| 446 | $FIND . -name "dataBAOCalib_*" -print | $XARGS -i iput -v -K {} ${i}
|
|---|
| 447 | $FIND . -name "dataBAORTCalib_*" -print | $XARGS -i iput -v -K {} ${i}
|
|---|
| 448 | $FIND . -name "diffOnOff_*" -print | $XARGS -i iput -v -K {} ${i}
|
|---|
| 449 | fi
|
|---|
| 450 | #save analysis logfile
|
|---|
| 451 | $LS -l ${tmppublicpath} > /dev/null
|
|---|
| 452 | $CP ${logFile} ${tmppublicpath}
|
|---|
| 453 | $ECHO "DEBUG (${scriptName}): END save output files"
|
|---|
| 454 | #clean up to avoid scratch SIZE EXCEED LIMIT
|
|---|
| 455 | cd ${aboveOnOffDir}
|
|---|
| 456 | $LS | $XARGS -i $RM -rf {}
|
|---|
| 457 | fi
|
|---|
| 458 | done
|
|---|
| 459 |
|
|---|
| 460 | exit 0
|
|---|
