1 | #!/bin/sh -xvf |
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2 | #Perform the ON-OFF analysis |
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3 | DATE=/bin/date |
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4 | GREP=/bin/grep |
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5 | AWK=/bin/awk |
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6 | ECHO=/bin/echo |
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7 | WC=/usr/bin/wc |
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8 | CAT=/bin/cat |
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9 | PRINTF=/usr/bin/printf |
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10 | FIND=/usr/bin/find |
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11 | MKDIR=/bin/mkdir |
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12 | XARGS=/usr/bin/xargs |
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13 | SORT=/bin/sort |
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14 | RM=/bin/rm |
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15 | TR=/usr/bin/tr |
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16 | CP=/bin/cp |
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17 | LS=/bin/ls |
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18 | CHMOD=/bin/chmod |
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19 | |
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20 | DefaultIFS=$' \t\n' |
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21 | IFS=$DefaultIFS |
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22 | |
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23 | #set Irods environment |
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24 | . /usr/local/shared/bin/irods_env.sh -noverbose |
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25 | |
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26 | scriptName="`basename $0`" |
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27 | $ECHO "Processing script ${scriptName} at `date`" |
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28 | #which source to analyse |
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29 | |
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30 | #Process cmd line args: the -src option is mandatory (source name as Abell85) |
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31 | sourceRadio= |
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32 | dateSelected= |
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33 | simulationMode=Off |
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34 | while [ $# -gt 0 ] |
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35 | do |
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36 | case "$1" in |
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37 | -src) sourceRadio=$2; shift;; |
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38 | -date) dateSelected=$2; shift;; |
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39 | -sim) simulationMode=On;; |
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40 | -h) |
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41 | echo >&2 \ |
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42 | "usage: $0 -src souce -date YYYYMMDD [-sim to trig simulation mode]" |
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43 | exit 1;; |
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44 | *) break;; # terminate while loop |
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45 | esac |
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46 | shift |
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47 | done |
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48 | |
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49 | |
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50 | if [ ${simulationMode} = "On" ]; then |
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51 | $ECHO "INFO ${scriptName} running in SIMUL mode" |
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52 | fi |
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53 | |
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54 | if [ "<${sourceRadio}>" = "<>" ]; then |
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55 | $ECHO "FATAL: You have forgotten to select the source option (-src)" |
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56 | exit 1 |
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57 | fi |
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58 | |
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59 | case ${sourceRadio} in |
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60 | Abell85) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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61 | Abell2440) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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62 | Abell1205) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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63 | NGC4383) $ECHO "INFO (${scriptName}): process ${sourceRadio}";; |
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64 | *) ECHO "FATAL (${scriptName}): process ${sourceRadio} not yet foreseen" |
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65 | exit 1;; |
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66 | esac |
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67 | |
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68 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" ` |
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69 | |
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70 | #Path to public backupable path |
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71 | publicpath="/afs/in2p3.fr/home/c/campagne/public" |
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72 | |
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73 | |
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74 | #temporary files to synchronize scripts |
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75 | tmppublicpath=${TMPPUBLICPATH} |
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76 | #wakeup the NFS disk |
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77 | $LS -l ${tmppublicpath} > /dev/null |
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78 | |
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79 | #Path where the job will do temporary IO |
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80 | . ${SCRIPTPATH}/set_iojobpath.sh |
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81 | iojobpath=$(set_iojobpath) |
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82 | cd ${iojobpath} |
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83 | |
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84 | localpath="${sourceRadio}" |
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85 | $MKDIR -p ./${localpath} |
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86 | cd ./${localpath} |
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87 | |
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88 | |
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89 | #Path of the utility scripts |
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90 | scriptpath=${SCRIPTPATH} |
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91 | |
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92 | OUT1=${publicpath}/baodaqstatus-current.txt |
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93 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then |
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94 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem" |
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95 | exit 1 |
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96 | fi |
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97 | |
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98 | |
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99 | |
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100 | $ECHO "You have selected sourceRadio = ${sourceRadio} [date = ${dateSelected}]" |
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101 | #JEC 14/12/11 One should take care of DR extension for Drift Scan |
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102 | #tableau=( `$GREP -i "${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` ) |
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103 | tableau=( `$GREP -i "${sourceRadio}/${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` ) |
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104 | IFS=' |
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105 | ' |
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106 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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107 | IFS=$DefaultIFS |
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108 | |
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109 | $ECHO "We are in directory `pwd`" |
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110 | |
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111 | for i in ${tableau[@]} |
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112 | do |
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113 | # |
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114 | |
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115 | $ECHO "DEBUG: (${scriptName}) irods root dir $i" |
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116 | |
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117 | #ON-OFF avec les RAW files normalises |
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118 | file=`ils ${i} 2>&1 | $GREP -i "diffOnOffRAw_.*\.ppf"` |
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119 | file=`$ECHO $file` |
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120 | if [ "<${file}>" != "<>" ]; then |
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121 | iget -f -v ${i}/${file} |
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122 | fi |
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123 | |
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124 | #ON & OFF RAW files normalises |
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125 | file=`ils ${i} 2>&1 | $GREP -i "dataRAw_.*\.ppf"` |
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126 | file=`$ECHO $file` |
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127 | if [ "<${file}>" != "<>" ]; then |
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128 | iget -f -v ${i}/${file} |
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129 | fi |
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130 | |
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131 | #fichiers de calibrations BAO |
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132 | calibfiles=( `ils ${i} 2>&1 | $GREP -i "calib_.*\.txt" ` ) |
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133 | IFS=' |
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134 | ' |
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135 | calibfiles=( $( $PRINTF "%s\n" "${calibfiles[@]}" | $AWK 'x[$0]++ == 0' ) ) |
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136 | IFS=$DefaultIFS |
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137 | |
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138 | for j in ${calibfiles[@]} |
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139 | do |
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140 | file=`$ECHO $j` |
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141 | iget -f -v ${i}/${file} |
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142 | done |
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143 | |
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144 | done |
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145 | |
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146 | exit 0 |
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