1 | // Utilisation de SOPHYA pour faciliter les tests ... |
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2 | #include "sopnamsp.h" |
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3 | #include "machdefs.h" |
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4 | #include <dirent.h> |
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5 | #include <matharr.h> |
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6 | |
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7 | // include standard c/c++ |
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8 | #include <regex.h> |
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9 | #include <stdio.h> |
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10 | #include <stdlib.h> |
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11 | #include <limits> |
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12 | #include <iostream> |
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13 | #include <fstream> |
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14 | #include <string> |
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15 | #include <vector> |
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16 | #include <map> |
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17 | #include <functional> |
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18 | #include <algorithm> |
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19 | #include <numeric> |
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20 | #include <list> |
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21 | #include <exception> |
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22 | |
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23 | // include sophya mesure ressource CPU/memoire ... |
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24 | #include "resusage.h" |
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25 | #include "ctimer.h" |
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26 | #include "timing.h" |
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27 | #include "timestamp.h" |
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28 | #include "strutilxx.h" |
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29 | #include "ntuple.h" |
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30 | #include "fioarr.h" |
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31 | #include "tarrinit.h" |
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32 | #include "histinit.h" |
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33 | #include "fitsioserver.h" |
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34 | #include "fiosinit.h" |
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35 | #include "ppersist.h" |
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36 | |
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37 | //----------------------------------------------- |
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38 | //Usage |
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39 | // |
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40 | //./Objs/mergeAnaFiles -act meanRawDiffOnOff -inPath /sps/baoradio/AmasNancay/JEC/ -src NGC4383 -ppfFile dataRaw -debug 1000 -mxcycles 10 |
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41 | //./Objs/mergeAnaFiles -src Abell85 -act meanCalibBAODiffOnOff -mxcycles 500 -calibfreq 1410 -inPath /sps/baoradio/AmasNancay/JEC/ -ppfFile dataRaw -debug 1 >& mergeAna-500.log |
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42 | // |
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43 | // |
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44 | //----------------------------------------------- |
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45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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49 | //Input parameters |
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50 | struct Param { |
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51 | int debuglev_; //debug |
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52 | string inPath_; //root directory of the input files |
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53 | string outPath_; //output files are located here |
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54 | string sourceName_; //source name & subdirectory of the input files |
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55 | string ppfFile_; //generic name of the input files |
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56 | int nSliceInFreq_; //used by reduceSpectra() fnc |
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57 | string calibFreq_; //freq. value used for calibration |
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58 | r_4 rcalibFreq_; //float version |
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59 | string calibBandFreq_; //band of freq. used for calibration |
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60 | r_4 rcalibBandFreq_; //float version |
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61 | int maxNumberCycles_;//(int)maximum number of cycles to be treated |
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62 | string maxNumberCyclesStr_;//(string)maximum number of cycles to be treated |
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63 | } para; |
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64 | //-------------------------------------------------------------- |
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65 | //Utility functions |
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66 | // template <class T> |
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67 | // void MeanSigma(TArray<T> const & a, T & mean, T & sig){ |
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68 | // if (a.NbDimensions() < 1) |
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69 | // throw RangeCheckError("MathArray<T>::MeanSigma(TArray<T> const & a..) Not Allocated Array a !"); |
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70 | // const T * pe; |
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71 | // sa_size_t j,k; |
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72 | // mean=0.; |
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73 | // sig = 0.; |
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74 | // T valok; |
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75 | // if (a.AvgStep() > 0) { // regularly spaced elements |
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76 | // sa_size_t step = a.AvgStep(); |
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77 | // sa_size_t maxx = a.Size()*step; |
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78 | // pe = a.Data(); |
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79 | // for(k=0; k<maxx; k+=step ) { |
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80 | // valok = pe[k]; |
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81 | // mean += valok; sig += valok*valok; |
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82 | // } |
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83 | // } |
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84 | // else { // Non regular data spacing ... |
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85 | // int_4 ka = a.MaxSizeKA(); |
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86 | // sa_size_t step = a.Step(ka); |
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87 | // sa_size_t gpas = a.Size(ka)*step; |
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88 | // sa_size_t naxa = a.Size()/a.Size(ka); |
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89 | // for(j=0; j<naxa; j++) { |
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90 | // pe = a.DataBlock().Begin()+a.Offset(ka,j); |
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91 | // for(k=0; k<gpas; k+=step) { |
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92 | // valok = pe[k]; |
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93 | // mean += valok; sig += valok*valok; |
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94 | // } |
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95 | // } |
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96 | // } |
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97 | // T dsz = (T)(a.Size()); |
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98 | // mean /= dsz; |
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99 | // if (dsz > 1.5) { |
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100 | // sig = sig/dsz - mean*mean; |
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101 | // sig *= (dsz/(dsz-1)); |
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102 | // if (sig >= 0.) sig = sqrt(sig); |
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103 | // } |
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104 | // else sig = 0.; |
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105 | // } |
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106 | |
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107 | |
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108 | sa_size_t freqToChan(r_4 f){ |
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109 | return (sa_size_t)((f-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*NUMBER_OF_FREQ); |
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110 | } |
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111 | //-------- |
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112 | //COMPUTE the mean value on a freq. range for all channels |
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113 | //-------- |
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114 | void meanInRange(const TMatrix<r_4> mtx, |
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115 | sa_size_t chLow, |
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116 | sa_size_t chHigh, |
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117 | TVector<r_4>& vec){ |
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118 | |
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119 | sa_size_t nr = mtx.NRows(); |
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120 | |
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121 | for (sa_size_t ir=0; ir<nr; ir++){ |
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122 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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123 | r_8 mean, sigma; |
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124 | MeanSigma(tmp,mean,sigma); |
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125 | vec(ir) = mean; |
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126 | } |
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127 | } |
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128 | //--------- |
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129 | class median_of_empty_list_exception:public std::exception{ |
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130 | virtual const char* what() const throw() { |
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131 | return "Attempt to take the median of an empty list of numbers. " |
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132 | "The median of an empty list is undefined."; |
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133 | } |
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134 | }; |
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135 | template<class RandAccessIter> |
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136 | double median(RandAccessIter begin, RandAccessIter end) |
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137 | throw(median_of_empty_list_exception){ |
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138 | if(begin == end){ throw median_of_empty_list_exception(); } |
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139 | std::size_t size = end - begin; |
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140 | std::size_t middleIdx = size/2; |
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141 | RandAccessIter target = begin + middleIdx; |
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142 | std::nth_element(begin, target, end); |
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143 | |
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144 | if(size % 2 != 0){ //Odd number of elements |
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145 | return *target; |
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146 | }else{ //Even number of elements |
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147 | double a = *target; |
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148 | RandAccessIter targetNeighbor= target-1; |
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149 | std::nth_element(begin, targetNeighbor, end); |
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150 | return (a+*targetNeighbor)/2.0; |
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151 | } |
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152 | } |
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153 | |
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154 | //------------- |
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155 | //JEC 25/10/11 Perform a median filtering with a sliding window of "halfwidth" half width |
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156 | // It takes care of the edges and is based on the median function (above) |
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157 | void medianFiltering(const TMatrix<r_4> mtx, |
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158 | sa_size_t halfwidth, |
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159 | TMatrix<r_4>& vec) { |
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160 | |
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161 | sa_size_t nr = mtx.NRows(); |
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162 | sa_size_t nc = mtx.NCols(); |
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163 | sa_size_t chMin = 0; |
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164 | sa_size_t chMax = nc-1; |
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165 | |
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166 | for (sa_size_t ir=0; ir<nr; ir++){ |
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167 | for (sa_size_t ic=0; ic<nc; ic++) { |
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168 | sa_size_t chLow = ic-halfwidth; |
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169 | chLow = (chLow >= chMin) ? chLow : chMin; |
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170 | sa_size_t chHigh = ic+halfwidth; |
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171 | chHigh = ( chHigh <= chMax ) ? chHigh : chMax; |
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172 | TVector<r_4> tmp(mtx(Range(ir),Range(chLow,chHigh)),false); |
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173 | vector<r_4> val; |
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174 | tmp.FillTo(val); |
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175 | vec(ir,ic) = median(val.begin(),val.end()); |
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176 | } |
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177 | } |
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178 | } |
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179 | //------------- |
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180 | void split(const string& str, const string& delimiters , vector<string>& tokens) { |
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181 | // Skip delimiters at beginning. |
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182 | string::size_type lastPos = str.find_first_not_of(delimiters, 0); |
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183 | // Find first "non-delimiter". |
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184 | string::size_type pos = str.find_first_of(delimiters, lastPos); |
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185 | |
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186 | while (string::npos != pos || string::npos != lastPos) |
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187 | { |
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188 | // Found a token, add it to the vector. |
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189 | tokens.push_back(str.substr(lastPos, pos - lastPos)); |
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190 | // Skip delimiters. Note the "not_of" |
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191 | lastPos = str.find_first_not_of(delimiters, pos); |
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192 | // Find next "non-delimiter" |
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193 | pos = str.find_first_of(delimiters, lastPos); |
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194 | } |
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195 | } |
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196 | //-------------------------------------------------------------- |
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197 | char *regexp (const char *string, const char *patrn, int *begin, int *end) { |
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198 | int i, w=0, len; |
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199 | char *word = NULL; |
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200 | regex_t rgT; |
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201 | regmatch_t match; |
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202 | regcomp(&rgT,patrn,REG_EXTENDED); |
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203 | if ((regexec(&rgT,string,1,&match,0)) == 0) { |
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204 | *begin = (int)match.rm_so; |
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205 | *end = (int)match.rm_eo; |
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206 | len = *end-*begin; |
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207 | word=(char*)malloc(len+1); |
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208 | for (i=*begin; i<*end; i++) { |
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209 | word[w] = string[i]; |
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210 | w++; } |
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211 | word[w]=0; |
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212 | } |
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213 | regfree(&rgT); |
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214 | return word; |
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215 | } |
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216 | //------- |
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217 | sa_size_t round_sa(r_4 r) { |
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218 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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219 | } |
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220 | //----- |
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221 | string StringToLower(string strToConvert){ |
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222 | //change each element of the string to lower case |
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223 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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224 | strToConvert[i] = tolower(strToConvert[i]); |
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225 | } |
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226 | return strToConvert;//return the converted string |
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227 | } |
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228 | //----- |
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229 | bool stringCompare( const string &left, const string &right ){ |
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230 | if( left.size() < right.size() ) |
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231 | return true; |
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232 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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233 | if( tolower( *lit ) < tolower( *rit ) ) |
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234 | return true; |
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235 | else if( tolower( *lit ) > tolower( *rit ) ) |
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236 | return false; |
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237 | return false; |
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238 | } |
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239 | //----- |
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240 | list<string> ListOfFileInDir(string dir, string filePattern) throw(string) { |
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241 | list<string> theList; |
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242 | |
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243 | |
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244 | DIR *dip; |
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245 | struct dirent *dit; |
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246 | string msg; string fileName; |
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247 | string fullFileName; |
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248 | size_t found; |
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249 | |
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250 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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251 | msg = "opendir failed on directory "+dir; |
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252 | throw msg; |
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253 | } |
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254 | while ( (dit = readdir(dip)) != NULL ) { |
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255 | fileName = dit->d_name; |
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256 | found=fileName.find(filePattern); |
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257 | if (found != string::npos) { |
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258 | fullFileName = dir + "/"; |
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259 | fullFileName += fileName; |
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260 | theList.push_back(fullFileName); |
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261 | } |
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262 | }//eo while |
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263 | if (closedir(dip) == -1) { |
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264 | msg = "closedir failed on directory "+dir; |
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265 | throw msg; |
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266 | } |
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267 | |
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268 | theList.sort(stringCompare); |
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269 | |
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270 | return theList; |
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271 | |
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272 | } |
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273 | // |
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274 | class StringMatch : public unary_function<string,bool> { |
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275 | public: |
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276 | StringMatch(const string& pattern): pattern_(pattern){} |
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277 | bool operator()(const string& aStr) const { |
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278 | |
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279 | |
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280 | int b,e; |
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281 | regexp(aStr.c_str(),pattern_.c_str(),&b,&e); |
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282 | |
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283 | // cout << "investigate " << aStr << " to find " << pattern_ |
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284 | // << "[" <<b<<","<<e<<"]" |
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285 | // << endl; |
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286 | |
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287 | |
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288 | if (b != 0) return false; |
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289 | if (e != (int)aStr.size()) return false; |
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290 | return true; |
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291 | |
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292 | } |
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293 | private: |
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294 | string pattern_; |
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295 | }; |
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296 | //------------------------------------------------------- |
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297 | //Rebin in frequence + compute mean and sigma |
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298 | void reduceSpectra(const TMatrix<r_4>& specMtxInPut, |
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299 | TMatrix<r_4>& meanMtx, |
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300 | TMatrix<r_4>& sigmaMtx) { |
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301 | sa_size_t nSliceFreq = para.nSliceInFreq_; |
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302 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
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303 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
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304 | sa_size_t freqLow= iSlice*deltaFreq; |
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305 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
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306 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
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307 | TVector<r_4> reducedRow; |
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308 | reducedRow = specMtxInPut.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
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309 | double mean; |
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310 | double sigma; |
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311 | MeanSigma(reducedRow,mean,sigma); |
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312 | meanMtx(iCh,iSlice) = mean; |
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313 | sigmaMtx(iCh,iSlice) = sigma; |
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314 | }//eo loop on channels |
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315 | }//eo loop on slices |
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316 | } |
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317 | |
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318 | //AST 18/11/11 |
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319 | //------------------------------------------------------- |
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320 | //Make n-tuple with calibration coefficients |
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321 | // |
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322 | void calibCoeffNtp() throw(string) { |
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323 | list<string> listOfFiles; |
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324 | string directoryName; |
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325 | directoryName = para.inPath_ + "/" + para.sourceName_; |
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326 | |
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327 | //Make the listing of the directory |
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328 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
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329 | |
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330 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
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331 | iFileEnd = listOfFiles.end(); |
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332 | |
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333 | static const int NINFO=19; |
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334 | char* calibTupleName[NINFO]={"date","run","cycle" |
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335 | ,"meancoeffoff0","meancoeffoff1" |
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336 | ,"meancoeffon0","meancoeffon1" |
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337 | ,"coeffoff0","coeffoff1" |
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338 | ,"coeffon0","coeffon1" |
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339 | ,"invmeancoeffoff0","invmeancoeffoff1" |
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340 | ,"invmeancoeffon0","invmeancoeffon1" |
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341 | ,"invcoeffoff0","invcoeffoff1" |
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342 | ,"invcoeffon0","invcoeffon1" |
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343 | }; |
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344 | NTuple calibcoeffs(NINFO,calibTupleName); |
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345 | r_4 xnt[NINFO]; |
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346 | |
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347 | int totalNumberRuns=0; //total number of runs |
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348 | int totalNumberCycles=0; //total number of cycles for normalisation |
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349 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
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350 | if (para.debuglev_>90){ |
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351 | cout << "load file <" << *iFile << ">" << endl; |
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352 | } |
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353 | |
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354 | vector<string> tokens; |
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355 | split(*iFile,"_",tokens); |
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356 | string dateOfRun = tokens[1]; |
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357 | r_4 rdateOfRun = atoi(dateOfRun.c_str()) - 2011*1.e4; |
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358 | |
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359 | if (para.debuglev_>90){ |
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360 | cout << "date <" << dateOfRun << ">" << endl; |
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361 | cout << "rdate <" << rdateOfRun << ">" << endl; |
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362 | } |
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363 | vector<string> tokens2; |
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364 | split(tokens[2],".",tokens2); |
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365 | string srcLower = tokens2[0]; |
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366 | |
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367 | PInPersist fin(*iFile); |
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368 | vector<string> vec = fin.GetNameTags(); |
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369 | |
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370 | vector<string> modeList; |
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371 | modeList.push_back("On"); |
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372 | modeList.push_back("Off"); |
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373 | vector<string>::const_iterator iMode; |
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374 | |
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375 | map<string, list<int> > cycleModeCollect; |
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376 | |
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377 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
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378 | list<string> listOfSpectra; |
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379 | //Keep only required PPF objects |
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380 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
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381 | std::remove_copy_if( |
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382 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
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383 | not1(StringMatch(matchstr)) |
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384 | ); |
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385 | |
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386 | listOfSpectra.sort(stringCompare); |
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387 | iSpecEnd = listOfSpectra.end(); |
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388 | |
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389 | matchstr = "[0-9]+"; |
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390 | //Loop of spectra matrix |
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391 | list<int> listOfCycles; |
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392 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
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393 | int b,e; |
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394 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
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395 | if (para.debuglev_>90){ |
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396 | cout << " spectra <" << *iSpec << ">" << endl; |
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397 | cout << " cycle " << iSpec->substr(b) << endl; |
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398 | } |
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399 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
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400 | }//end loop spectra |
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401 | cycleModeCollect[*iMode] = listOfCycles; |
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402 | }//end of mode |
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403 | |
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404 | //Take the Intersection of the list Of cycles in mode Off and On |
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405 | list<int> commonCycles; |
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406 | set_intersection(cycleModeCollect["On"].begin(), |
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407 | cycleModeCollect["On"].end(), |
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408 | cycleModeCollect["Off"].begin(), |
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409 | cycleModeCollect["Off"].end(), |
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410 | back_inserter(commonCycles) |
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411 | ); |
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412 | |
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413 | if (para.debuglev_>90){ |
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414 | cout << "Liste of cycles common to On & Off: <"; |
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415 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
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416 | cout << *i << " "; |
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417 | } |
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418 | cout << ">" << endl; |
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419 | } |
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420 | |
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421 | // |
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422 | //Load BAO Calibration factors "per Cycle and Channels" |
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423 | //Compute the mean per Cycle to |
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424 | // fill factors "per Run and Channels" with the same cycle list |
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425 | // |
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426 | // |
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427 | //TODO improve the code.... |
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428 | |
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429 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
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430 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
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431 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
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432 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
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433 | |
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434 | string calibFileName; |
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435 | ifstream ifs; |
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436 | sa_size_t nr,nc; //values read |
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437 | |
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438 | //OFF Cycle per Channel |
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439 | calibFileName = directoryName + "/" |
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440 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
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441 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
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442 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
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443 | ifs.open(calibFileName.c_str()); |
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444 | if ( ! ifs.is_open() ) { |
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445 | throw calibFileName + " cannot be opened..."; |
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446 | } |
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447 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
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448 | if(para.debuglev_>9){ |
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449 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
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450 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
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451 | cout << endl; |
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452 | } |
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453 | |
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454 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
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455 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
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456 | {//Compute the mean |
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457 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
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458 | double mean,sigma; |
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459 | MeanSigma(coef,mean,sigma); |
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460 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
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461 | } |
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462 | if(para.debuglev_>9){ |
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463 | cout << "Fill calib. with mean value " << endl; |
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464 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
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465 | cout << endl; |
---|
466 | } |
---|
467 | |
---|
468 | TMatrix<r_4> invcalibBAOfactors_Off_Cycle_Ch0(nr,nc); |
---|
469 | invcalibBAOfactors_Off_Cycle_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
470 | {//Compute the inverse value |
---|
471 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
472 | invcalibBAOfactors_Off_Cycle_Ch0.Column(1).SetCst(1); |
---|
473 | invcalibBAOfactors_Off_Cycle_Ch0.Column(1).Div(coef); |
---|
474 | if(para.debuglev_>9){ |
---|
475 | cout << "Fill calib. with inverse value " << endl; |
---|
476 | invcalibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
477 | cout << endl; |
---|
478 | } |
---|
479 | } |
---|
480 | TMatrix<r_4> invcalibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
481 | invcalibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
482 | {//Compute the inverse mean |
---|
483 | TVector<r_4> coef(invcalibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
484 | double mean,sigma; |
---|
485 | MeanSigma(coef,mean,sigma); |
---|
486 | invcalibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
487 | } |
---|
488 | if(para.debuglev_>9){ |
---|
489 | cout << "Fill calib. with inverse mean value " << endl; |
---|
490 | invcalibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
491 | cout << endl; |
---|
492 | } |
---|
493 | ifs.close(); |
---|
494 | // |
---|
495 | calibFileName = directoryName + "/" |
---|
496 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
497 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
498 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
499 | ifs.open(calibFileName.c_str()); |
---|
500 | if ( ! ifs.is_open() ) { |
---|
501 | |
---|
502 | throw calibFileName + " cannot be opened..."; |
---|
503 | } |
---|
504 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
505 | if(para.debuglev_>9){ |
---|
506 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
507 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
508 | cout << endl; |
---|
509 | } |
---|
510 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
511 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
512 | {//Compute the mean |
---|
513 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
514 | double mean,sigma; |
---|
515 | MeanSigma(coef,mean,sigma); |
---|
516 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
517 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
518 | } |
---|
519 | if(para.debuglev_>9){ |
---|
520 | cout << "Fill calib. with mean value " << endl; |
---|
521 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
522 | cout << endl; |
---|
523 | } |
---|
524 | TMatrix<r_4> invcalibBAOfactors_Off_Cycle_Ch1(nr,nc); |
---|
525 | invcalibBAOfactors_Off_Cycle_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
526 | {//Compute the inverse value |
---|
527 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
528 | invcalibBAOfactors_Off_Cycle_Ch1.Column(1).SetCst(1); |
---|
529 | invcalibBAOfactors_Off_Cycle_Ch1.Column(1).Div(coef); |
---|
530 | if(para.debuglev_>9){ |
---|
531 | cout << "Fill calib. with inverse value " << endl; |
---|
532 | invcalibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
533 | cout << endl; |
---|
534 | } |
---|
535 | } |
---|
536 | TMatrix<r_4> invcalibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
537 | invcalibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
538 | {//Compute the inverse mean |
---|
539 | TVector<r_4> coef(invcalibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
540 | double mean,sigma; |
---|
541 | MeanSigma(coef,mean,sigma); |
---|
542 | invcalibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
543 | } |
---|
544 | if(para.debuglev_>9){ |
---|
545 | cout << "Fill calib. with inverse mean value " << endl; |
---|
546 | invcalibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
547 | cout << endl; |
---|
548 | } |
---|
549 | ifs.close(); |
---|
550 | |
---|
551 | //ON Cycle per Channel |
---|
552 | calibFileName = directoryName + "/" |
---|
553 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
554 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
555 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
556 | ifs.open(calibFileName.c_str()); |
---|
557 | if ( ! ifs.is_open() ) { |
---|
558 | |
---|
559 | throw calibFileName + " cannot be opened..."; |
---|
560 | } |
---|
561 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
562 | if(para.debuglev_>9){ |
---|
563 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
564 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
565 | cout << endl; |
---|
566 | } |
---|
567 | |
---|
568 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
569 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
570 | {//Compute the mean |
---|
571 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
572 | double mean,sigma; |
---|
573 | MeanSigma(coef,mean,sigma); |
---|
574 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
575 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
576 | } |
---|
577 | if(para.debuglev_>9){ |
---|
578 | cout << "Fill calib. with mean value " << endl; |
---|
579 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
580 | cout << endl; |
---|
581 | } |
---|
582 | |
---|
583 | TMatrix<r_4> invcalibBAOfactors_On_Cycle_Ch0(nr,nc); |
---|
584 | invcalibBAOfactors_On_Cycle_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
585 | {//Compute the inverse value |
---|
586 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
587 | invcalibBAOfactors_On_Cycle_Ch0.Column(1).SetCst(1); |
---|
588 | invcalibBAOfactors_On_Cycle_Ch0.Column(1).Div(coef); |
---|
589 | if(para.debuglev_>9){ |
---|
590 | cout << "Fill calib. with inverse value " << endl; |
---|
591 | invcalibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
592 | cout << endl; |
---|
593 | } |
---|
594 | } |
---|
595 | TMatrix<r_4> invcalibBAOfactors_On_Run_Ch0(nr,nc); |
---|
596 | invcalibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
597 | {//Compute the inverse mean |
---|
598 | TVector<r_4> coef(invcalibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
599 | double mean,sigma; |
---|
600 | MeanSigma(coef,mean,sigma); |
---|
601 | invcalibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
602 | } |
---|
603 | if(para.debuglev_>9){ |
---|
604 | cout << "Fill calib. with inverse mean value " << endl; |
---|
605 | invcalibBAOfactors_On_Run_Ch0.Print(cout); |
---|
606 | cout << endl; |
---|
607 | } |
---|
608 | ifs.close(); |
---|
609 | |
---|
610 | calibFileName = directoryName + "/" |
---|
611 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
612 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
613 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
614 | ifs.open(calibFileName.c_str()); |
---|
615 | if ( ! ifs.is_open() ) { |
---|
616 | throw calibFileName + " cannot be opened..."; |
---|
617 | } |
---|
618 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
619 | if(para.debuglev_>9){ |
---|
620 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
621 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
622 | cout << endl; |
---|
623 | } |
---|
624 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
625 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
626 | {//Compute the mean |
---|
627 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
628 | double mean,sigma; |
---|
629 | MeanSigma(coef,mean,sigma); |
---|
630 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
631 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
632 | } |
---|
633 | if(para.debuglev_>9){ |
---|
634 | cout << "Fill calib. with mean value " << endl; |
---|
635 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
636 | cout << endl; |
---|
637 | } |
---|
638 | |
---|
639 | TMatrix<r_4> invcalibBAOfactors_On_Cycle_Ch1(nr,nc); |
---|
640 | invcalibBAOfactors_On_Cycle_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
641 | {//Compute the inverse value |
---|
642 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
643 | invcalibBAOfactors_On_Cycle_Ch1.Column(1).SetCst(1); |
---|
644 | invcalibBAOfactors_On_Cycle_Ch1.Column(1).Div(coef); |
---|
645 | if(para.debuglev_>9){ |
---|
646 | cout << "Fill calib. with inverse value " << endl; |
---|
647 | invcalibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
648 | cout << endl; |
---|
649 | } |
---|
650 | } |
---|
651 | TMatrix<r_4> invcalibBAOfactors_On_Run_Ch1(nr,nc); |
---|
652 | invcalibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
653 | {//Compute the inverse mean |
---|
654 | TVector<r_4> coef(invcalibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
655 | double mean,sigma; |
---|
656 | MeanSigma(coef,mean,sigma); |
---|
657 | invcalibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
658 | } |
---|
659 | if(para.debuglev_>9){ |
---|
660 | cout << "Fill calib. with inverse mean value " << endl; |
---|
661 | invcalibBAOfactors_On_Run_Ch1.Print(cout); |
---|
662 | cout << endl; |
---|
663 | } |
---|
664 | ifs.close(); |
---|
665 | //link <cycle> - <calibration coefficient> |
---|
666 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
667 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
668 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
669 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
670 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
671 | |
---|
672 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
673 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
674 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
675 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
676 | |
---|
677 | map<int,r_4> invcalibBAO_Off_Run_Ch0; |
---|
678 | map<int,r_4> invcalibBAO_Off_Run_Ch1; |
---|
679 | map<int,r_4> invcalibBAO_On_Run_Ch0; |
---|
680 | map<int,r_4> invcalibBAO_On_Run_Ch1; |
---|
681 | |
---|
682 | map<int,r_4> invcalibBAO_Off_Cycle_Ch0; |
---|
683 | map<int,r_4> invcalibBAO_Off_Cycle_Ch1; |
---|
684 | map<int,r_4> invcalibBAO_On_Cycle_Ch0; |
---|
685 | map<int,r_4> invcalibBAO_On_Cycle_Ch1; |
---|
686 | |
---|
687 | //per Run based BAO coefficients |
---|
688 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
689 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
690 | // cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
691 | // << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
692 | |
---|
693 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
694 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
695 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
696 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
697 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
698 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
699 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
700 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
701 | |
---|
702 | invcalibBAO_Off_Run_Ch0[(int)invcalibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
703 | = invcalibBAOfactors_Off_Run_Ch0(ir,1); |
---|
704 | invcalibBAO_Off_Cycle_Ch0[(int)invcalibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
705 | = invcalibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
706 | invcalibBAO_Off_Run_Ch1[(int)invcalibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
707 | = invcalibBAOfactors_Off_Run_Ch1(ir,1); |
---|
708 | invcalibBAO_Off_Cycle_Ch1[(int)invcalibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
709 | = invcalibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
710 | }//eo loop on coef Off |
---|
711 | |
---|
712 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
713 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
714 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
715 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
716 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
717 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
718 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
719 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
720 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
721 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
722 | |
---|
723 | invcalibBAO_On_Run_Ch0[(int)invcalibBAOfactors_On_Run_Ch0(ir,0)] |
---|
724 | = invcalibBAOfactors_On_Run_Ch0(ir,1); |
---|
725 | invcalibBAO_On_Cycle_Ch0[(int)invcalibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
726 | = invcalibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
727 | invcalibBAO_On_Run_Ch1[(int)invcalibBAOfactors_On_Run_Ch1(ir,0)] |
---|
728 | = invcalibBAOfactors_On_Run_Ch1(ir,1); |
---|
729 | invcalibBAO_On_Cycle_Ch1[(int)invcalibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
730 | = invcalibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
731 | }//eo loop on coef On |
---|
732 | |
---|
733 | //Loop on cyles |
---|
734 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
735 | |
---|
736 | //Look if the cycle has been calibrated... |
---|
737 | bool isCycleCalibrated = |
---|
738 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
739 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
740 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
741 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
742 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
743 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
744 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
745 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
746 | |
---|
747 | if(para.debuglev_>9) { |
---|
748 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
749 | if (isCycleCalibrated) { |
---|
750 | cout << "Cycle calibrated " << endl; |
---|
751 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
752 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
753 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
754 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
755 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
756 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
757 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
758 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
759 | } else { |
---|
760 | cout << "Cycle NOT calibrated " << endl; |
---|
761 | } |
---|
762 | }//debug |
---|
763 | |
---|
764 | if ( ! isCycleCalibrated ) continue; |
---|
765 | |
---|
766 | totalNumberCycles++; |
---|
767 | //Fill NTuple |
---|
768 | xnt[0] = rdateOfRun; |
---|
769 | xnt[1] = totalNumberRuns; |
---|
770 | xnt[2] = totalNumberCycles; |
---|
771 | xnt[3] = calibBAO_Off_Run_Ch0[*ic]; |
---|
772 | xnt[4] = calibBAO_Off_Run_Ch1[*ic]; |
---|
773 | xnt[5] = calibBAO_On_Run_Ch0[*ic]; |
---|
774 | xnt[6] = calibBAO_On_Run_Ch1[*ic]; |
---|
775 | xnt[7] = calibBAO_Off_Cycle_Ch0[*ic]; |
---|
776 | xnt[8] = calibBAO_Off_Cycle_Ch1[*ic]; |
---|
777 | xnt[9] = calibBAO_On_Cycle_Ch0[*ic]; |
---|
778 | xnt[10] = calibBAO_On_Cycle_Ch1[*ic]; |
---|
779 | xnt[11] = invcalibBAO_Off_Run_Ch0[*ic]; |
---|
780 | xnt[12] = invcalibBAO_Off_Run_Ch1[*ic]; |
---|
781 | xnt[13] = invcalibBAO_On_Run_Ch0[*ic]; |
---|
782 | xnt[14] = invcalibBAO_On_Run_Ch1[*ic]; |
---|
783 | xnt[15] = invcalibBAO_Off_Cycle_Ch0[*ic]; |
---|
784 | xnt[16] = invcalibBAO_Off_Cycle_Ch1[*ic]; |
---|
785 | xnt[17] = invcalibBAO_On_Cycle_Ch0[*ic]; |
---|
786 | xnt[18] = invcalibBAO_On_Cycle_Ch1[*ic]; |
---|
787 | |
---|
788 | calibcoeffs.Fill(xnt); |
---|
789 | |
---|
790 | //Quit if enough |
---|
791 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
792 | |
---|
793 | }//eo loop on cycles |
---|
794 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
795 | totalNumberRuns++; |
---|
796 | }//eo loop on spectra in a file |
---|
797 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
798 | |
---|
799 | {//save the results |
---|
800 | stringstream tmp; |
---|
801 | tmp << totalNumberCycles; |
---|
802 | string fileName = para.outPath_+"/calibcoeffTuple_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
803 | |
---|
804 | POutPersist fos(fileName); |
---|
805 | cout << "Save output in " << fileName << endl; |
---|
806 | |
---|
807 | string tag = "calib"; |
---|
808 | fos << PPFNameTag(tag) << calibcoeffs; |
---|
809 | |
---|
810 | }//end of save |
---|
811 | } |
---|
812 | |
---|
813 | //------------------------------------------------------- |
---|
814 | //Compute the mean of Diff ON-OFF BAO-calibrated spectra and also the mean/sigma of rebinned spectra |
---|
815 | // |
---|
816 | void meanCalibBAODiffOnOffCycles() throw(string) { |
---|
817 | |
---|
818 | list<string> listOfFiles; |
---|
819 | string directoryName; |
---|
820 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
821 | |
---|
822 | //Make the listing of the directory |
---|
823 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
824 | |
---|
825 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
826 | iFileEnd = listOfFiles.end(); |
---|
827 | |
---|
828 | //mean ON-OFF over the list of cycles |
---|
829 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
830 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
831 | TMatrix<r_4> meanDiffONOFF_perRunCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
832 | TMatrix<r_4> meanDiffONOFF_perCycleCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //set to 0 |
---|
833 | static const int NINFO=25; |
---|
834 | char* onffTupleName[NINFO]={"cycle" |
---|
835 | ,"onoffRaw0","onoffRaw1" |
---|
836 | ,"onoffRun0","onoffRun1" |
---|
837 | ,"onoffCycle0","onoffCycle1" |
---|
838 | ,"onoffRaw01420","onoffRaw11420" |
---|
839 | ,"onoffRun01420","onoffRun11420" |
---|
840 | ,"onoffCycle01420","onoffCycle11420" |
---|
841 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
842 | ,"onoffRun01420side","onoffRun11420side" |
---|
843 | ,"onoffCycle01420side","onoffCycle11420side" |
---|
844 | ,"onoffRaw0f14101415","onoffRaw1f14101415" |
---|
845 | ,"offRaw0f14101415","offRaw1f14101415" |
---|
846 | ,"onRaw0f14101415","onRaw1f14101415" |
---|
847 | }; |
---|
848 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
849 | r_4 xnt[NINFO]; |
---|
850 | |
---|
851 | //Lower and Higher freq. arround the Calibration Freq. bin to perform mean follow up |
---|
852 | sa_size_t chCalibLow = freqToChan(para.rcalibFreq_ - (para.rcalibBandFreq_*0.5)); |
---|
853 | sa_size_t chCalibHigh = freqToChan(para.rcalibFreq_ + (para.rcalibBandFreq_*0.5)); |
---|
854 | //Lower and Higher freq. just around 1420.4MHz Freq. bin to perform mean follow up |
---|
855 | sa_size_t ch1420Low; |
---|
856 | sa_size_t ch1420High; |
---|
857 | if (para.sourceName_ == "Abell85") { |
---|
858 | ch1420Low = freqToChan(1420.4-0.2); // Abell85 |
---|
859 | ch1420High = freqToChan(1420.4+0.2); |
---|
860 | } else if (para.sourceName_ == "Abell1205") { |
---|
861 | ch1420Low = freqToChan(1420.4-0.3); // Abell1205 |
---|
862 | ch1420High = freqToChan(1420.4+0.2); |
---|
863 | } else if (para.sourceName_ == "Abell2440") { |
---|
864 | ch1420Low = freqToChan(1420.4); // Abell2440 |
---|
865 | ch1420High = freqToChan(1420.4+0.3); |
---|
866 | } else { |
---|
867 | ch1420Low = freqToChan(1420.4-0.2); // Abell85 |
---|
868 | ch1420High = freqToChan(1420.4+0.2); |
---|
869 | } |
---|
870 | |
---|
871 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
872 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
873 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
874 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
875 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
876 | |
---|
877 | //1400-1420Mhz |
---|
878 | sa_size_t ch1400 = freqToChan(1400); |
---|
879 | // sa_size_t ch1405 = freqToChan(1400); |
---|
880 | sa_size_t ch1410 = freqToChan(1410); |
---|
881 | sa_size_t ch1415 = freqToChan(1415); |
---|
882 | sa_size_t ch1420 = freqToChan(1420); |
---|
883 | |
---|
884 | if (para.debuglev_>0){ |
---|
885 | cout << "freq. band for follow up [" << chCalibLow << ", "<< chCalibHigh << "]" << endl; |
---|
886 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
887 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
888 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
889 | } |
---|
890 | |
---|
891 | //Loop on files/run |
---|
892 | |
---|
893 | int totalNumberCycles=0; //total number of cycles for normalisation |
---|
894 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
895 | if (para.debuglev_>90){ |
---|
896 | cout << "load file <" << *iFile << ">" << endl; |
---|
897 | } |
---|
898 | |
---|
899 | vector<string> tokens; |
---|
900 | split(*iFile,"_",tokens); |
---|
901 | string dateOfRun = tokens[1]; |
---|
902 | if (para.debuglev_>90){ |
---|
903 | cout << "date <" << dateOfRun << ">" << endl; |
---|
904 | } |
---|
905 | vector<string> tokens2; |
---|
906 | split(tokens[2],".",tokens2); |
---|
907 | string srcLower = tokens2[0]; |
---|
908 | |
---|
909 | PInPersist fin(*iFile); |
---|
910 | vector<string> vec = fin.GetNameTags(); |
---|
911 | |
---|
912 | vector<string> modeList; |
---|
913 | modeList.push_back("On"); |
---|
914 | modeList.push_back("Off"); |
---|
915 | vector<string>::const_iterator iMode; |
---|
916 | |
---|
917 | map<string, list<int> > cycleModeCollect; |
---|
918 | |
---|
919 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
920 | list<string> listOfSpectra; |
---|
921 | //Keep only required PPF objects |
---|
922 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
923 | std::remove_copy_if( |
---|
924 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
925 | not1(StringMatch(matchstr)) |
---|
926 | ); |
---|
927 | |
---|
928 | listOfSpectra.sort(stringCompare); |
---|
929 | iSpecEnd = listOfSpectra.end(); |
---|
930 | |
---|
931 | matchstr = "[0-9]+"; |
---|
932 | //Loop of spectra matrix |
---|
933 | list<int> listOfCycles; |
---|
934 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
935 | int b,e; |
---|
936 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
937 | if (para.debuglev_>90){ |
---|
938 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
939 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
940 | } |
---|
941 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
942 | }//end loop spectra |
---|
943 | cycleModeCollect[*iMode] = listOfCycles; |
---|
944 | }//end of mode |
---|
945 | |
---|
946 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
947 | list<int> commonCycles; |
---|
948 | set_intersection(cycleModeCollect["On"].begin(), |
---|
949 | cycleModeCollect["On"].end(), |
---|
950 | cycleModeCollect["Off"].begin(), |
---|
951 | cycleModeCollect["Off"].end(), |
---|
952 | back_inserter(commonCycles) |
---|
953 | ); |
---|
954 | |
---|
955 | if (para.debuglev_>90){ |
---|
956 | cout << "Liste of cycles common to On & Off: <"; |
---|
957 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
958 | cout << *i << " "; |
---|
959 | } |
---|
960 | cout << ">" << endl; |
---|
961 | } |
---|
962 | |
---|
963 | // |
---|
964 | //Load BAO Calibration factors "per Cycle and Channels" |
---|
965 | //Compute the mean per Cycle to |
---|
966 | // fill factors "per Run and Channels" with the same cycle list |
---|
967 | // |
---|
968 | // |
---|
969 | //TODO improve the code.... |
---|
970 | |
---|
971 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch0; |
---|
972 | TMatrix<r_4> calibBAOfactors_Off_Cycle_Ch1; |
---|
973 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch0; |
---|
974 | TMatrix<r_4> calibBAOfactors_On_Cycle_Ch1; |
---|
975 | |
---|
976 | string calibFileName; |
---|
977 | ifstream ifs; |
---|
978 | sa_size_t nr,nc; //values read |
---|
979 | |
---|
980 | //OFF Cycle per Channel |
---|
981 | calibFileName = directoryName + "/" |
---|
982 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
983 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
984 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
985 | ifs.open(calibFileName.c_str()); |
---|
986 | if ( ! ifs.is_open() ) { |
---|
987 | |
---|
988 | throw calibFileName + " cannot be opened..."; |
---|
989 | } |
---|
990 | calibBAOfactors_Off_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
991 | if(para.debuglev_>9){ |
---|
992 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
993 | calibBAOfactors_Off_Cycle_Ch0.Print(cout); |
---|
994 | cout << endl; |
---|
995 | } |
---|
996 | |
---|
997 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch0(nr,nc); |
---|
998 | calibBAOfactors_Off_Run_Ch0.Column(0) = calibBAOfactors_Off_Cycle_Ch0.Column(0); |
---|
999 | {//Compute the mean |
---|
1000 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
1001 | double mean,sigma; |
---|
1002 | MeanSigma(coef,mean,sigma); |
---|
1003 | calibBAOfactors_Off_Run_Ch0.Column(1).SetCst(mean); |
---|
1004 | } |
---|
1005 | if(para.debuglev_>9){ |
---|
1006 | cout << "Fill calib. with mean value " << endl; |
---|
1007 | calibBAOfactors_Off_Run_Ch0.Print(cout); |
---|
1008 | cout << endl; |
---|
1009 | } |
---|
1010 | ifs.close(); |
---|
1011 | |
---|
1012 | // |
---|
1013 | calibFileName = directoryName + "/" |
---|
1014 | + "calib_" + dateOfRun + "_" + srcLower + "_Off_" |
---|
1015 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
1016 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1017 | ifs.open(calibFileName.c_str()); |
---|
1018 | if ( ! ifs.is_open() ) { |
---|
1019 | |
---|
1020 | throw calibFileName + " cannot be opened..."; |
---|
1021 | } |
---|
1022 | calibBAOfactors_Off_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
1023 | if(para.debuglev_>9){ |
---|
1024 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1025 | calibBAOfactors_Off_Cycle_Ch1.Print(cout); |
---|
1026 | cout << endl; |
---|
1027 | } |
---|
1028 | TMatrix<r_4> calibBAOfactors_Off_Run_Ch1(nr,nc); |
---|
1029 | calibBAOfactors_Off_Run_Ch1.Column(0) = calibBAOfactors_Off_Cycle_Ch1.Column(0); |
---|
1030 | {//Compute the mean |
---|
1031 | TVector<r_4> coef(calibBAOfactors_Off_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
1032 | double mean,sigma; |
---|
1033 | MeanSigma(coef,mean,sigma); |
---|
1034 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1035 | calibBAOfactors_Off_Run_Ch1.Column(1).SetCst(mean); |
---|
1036 | } |
---|
1037 | if(para.debuglev_>9){ |
---|
1038 | cout << "Fill calib. with mean value " << endl; |
---|
1039 | calibBAOfactors_Off_Run_Ch1.Print(cout); |
---|
1040 | cout << endl; |
---|
1041 | } |
---|
1042 | ifs.close(); |
---|
1043 | |
---|
1044 | //ON Cycle per Channel |
---|
1045 | calibFileName = directoryName + "/" |
---|
1046 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
1047 | + para.calibFreq_ +"MHz-Ch0Cycles.txt"; |
---|
1048 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1049 | ifs.open(calibFileName.c_str()); |
---|
1050 | if ( ! ifs.is_open() ) { |
---|
1051 | |
---|
1052 | throw calibFileName + " cannot be opened..."; |
---|
1053 | } |
---|
1054 | calibBAOfactors_On_Cycle_Ch0.ReadASCII(ifs,nr,nc); |
---|
1055 | if(para.debuglev_>9){ |
---|
1056 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1057 | calibBAOfactors_On_Cycle_Ch0.Print(cout); |
---|
1058 | cout << endl; |
---|
1059 | } |
---|
1060 | |
---|
1061 | TMatrix<r_4> calibBAOfactors_On_Run_Ch0(nr,nc); |
---|
1062 | calibBAOfactors_On_Run_Ch0.Column(0) = calibBAOfactors_On_Cycle_Ch0.Column(0); |
---|
1063 | {//Compute the mean |
---|
1064 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch0(Range::all(),Range::last()),false); |
---|
1065 | double mean,sigma; |
---|
1066 | MeanSigma(coef,mean,sigma); |
---|
1067 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1068 | calibBAOfactors_On_Run_Ch0.Column(1).SetCst(mean); |
---|
1069 | } |
---|
1070 | if(para.debuglev_>9){ |
---|
1071 | cout << "Fill calib. with mean value " << endl; |
---|
1072 | calibBAOfactors_On_Run_Ch0.Print(cout); |
---|
1073 | cout << endl; |
---|
1074 | } |
---|
1075 | ifs.close(); |
---|
1076 | |
---|
1077 | |
---|
1078 | calibFileName = directoryName + "/" |
---|
1079 | + "calib_" + dateOfRun + "_" + srcLower + "_On_" |
---|
1080 | + para.calibFreq_ +"MHz-Ch1Cycles.txt"; |
---|
1081 | if(para.debuglev_>0) cout << "Read Calib file " << calibFileName << endl; |
---|
1082 | ifs.open(calibFileName.c_str()); |
---|
1083 | if ( ! ifs.is_open() ) { |
---|
1084 | throw calibFileName + " cannot be opened..."; |
---|
1085 | } |
---|
1086 | calibBAOfactors_On_Cycle_Ch1.ReadASCII(ifs,nr,nc); |
---|
1087 | if(para.debuglev_>9){ |
---|
1088 | cout << "(nr,nc): "<< nr << "," << nc << endl; |
---|
1089 | calibBAOfactors_On_Cycle_Ch1.Print(cout); |
---|
1090 | cout << endl; |
---|
1091 | } |
---|
1092 | TMatrix<r_4> calibBAOfactors_On_Run_Ch1(nr,nc); |
---|
1093 | calibBAOfactors_On_Run_Ch1.Column(0) = calibBAOfactors_On_Cycle_Ch1.Column(0); |
---|
1094 | {//Compute the mean |
---|
1095 | TVector<r_4> coef(calibBAOfactors_On_Cycle_Ch1(Range::all(),Range::last()),false); |
---|
1096 | double mean,sigma; |
---|
1097 | MeanSigma(coef,mean,sigma); |
---|
1098 | // cout << "Mean: " << mean << " sigma " << sigma << endl; |
---|
1099 | calibBAOfactors_On_Run_Ch1.Column(1).SetCst(mean); |
---|
1100 | } |
---|
1101 | if(para.debuglev_>9){ |
---|
1102 | cout << "Fill calib. with mean value " << endl; |
---|
1103 | calibBAOfactors_On_Run_Ch1.Print(cout); |
---|
1104 | cout << endl; |
---|
1105 | } |
---|
1106 | |
---|
1107 | ifs.close(); |
---|
1108 | |
---|
1109 | //link <cycle> - <calibration coefficient> |
---|
1110 | //We cannot rely on identical cycle list of the OFF and ON calibration |
---|
1111 | map<int,r_4> calibBAO_Off_Run_Ch0; |
---|
1112 | map<int,r_4> calibBAO_Off_Run_Ch1; |
---|
1113 | map<int,r_4> calibBAO_On_Run_Ch0; |
---|
1114 | map<int,r_4> calibBAO_On_Run_Ch1; |
---|
1115 | |
---|
1116 | map<int,r_4> calibBAO_Off_Cycle_Ch0; |
---|
1117 | map<int,r_4> calibBAO_Off_Cycle_Ch1; |
---|
1118 | map<int,r_4> calibBAO_On_Cycle_Ch0; |
---|
1119 | map<int,r_4> calibBAO_On_Cycle_Ch1; |
---|
1120 | |
---|
1121 | //per Run based BAO coefficients |
---|
1122 | nr = calibBAOfactors_Off_Run_Ch0.NRows(); |
---|
1123 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
1124 | cout << "Calib. Off Run Ch0 cycle ["<< calibBAOfactors_Off_Run_Ch0(ir,0)<<"], val " |
---|
1125 | << calibBAOfactors_Off_Run_Ch0(ir,1) << endl; |
---|
1126 | |
---|
1127 | calibBAO_Off_Run_Ch0[(int)calibBAOfactors_Off_Run_Ch0(ir,0)] |
---|
1128 | = calibBAOfactors_Off_Run_Ch0(ir,1); |
---|
1129 | calibBAO_Off_Cycle_Ch0[(int)calibBAOfactors_Off_Cycle_Ch0(ir,0)] |
---|
1130 | = calibBAOfactors_Off_Cycle_Ch0(ir,1); |
---|
1131 | calibBAO_Off_Run_Ch1[(int)calibBAOfactors_Off_Run_Ch1(ir,0)] |
---|
1132 | = calibBAOfactors_Off_Run_Ch1(ir,1); |
---|
1133 | calibBAO_Off_Cycle_Ch1[(int)calibBAOfactors_Off_Cycle_Ch1(ir,0)] |
---|
1134 | = calibBAOfactors_Off_Cycle_Ch1(ir,1); |
---|
1135 | }//eo loop on coef Off |
---|
1136 | |
---|
1137 | nr = calibBAOfactors_On_Run_Ch0.NRows(); |
---|
1138 | for (sa_size_t ir=0; ir<nr; ++ir){ |
---|
1139 | calibBAO_On_Run_Ch0[(int)calibBAOfactors_On_Run_Ch0(ir,0)] |
---|
1140 | = calibBAOfactors_On_Run_Ch0(ir,1); |
---|
1141 | calibBAO_On_Cycle_Ch0[(int)calibBAOfactors_On_Cycle_Ch0(ir,0)] |
---|
1142 | = calibBAOfactors_On_Cycle_Ch0(ir,1); |
---|
1143 | calibBAO_On_Run_Ch1[(int)calibBAOfactors_On_Run_Ch1(ir,0)] |
---|
1144 | = calibBAOfactors_On_Run_Ch1(ir,1); |
---|
1145 | calibBAO_On_Cycle_Ch1[(int)calibBAOfactors_On_Cycle_Ch1(ir,0)] |
---|
1146 | = calibBAOfactors_On_Cycle_Ch1(ir,1); |
---|
1147 | }//eo loop on coef On |
---|
1148 | |
---|
1149 | //Loop on cyles |
---|
1150 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
1151 | |
---|
1152 | //Look if the cycle has been calibrated... |
---|
1153 | bool isCycleCalibrated = |
---|
1154 | ( calibBAO_On_Run_Ch0.count(*ic) * |
---|
1155 | calibBAO_On_Run_Ch1.count(*ic) * |
---|
1156 | calibBAO_Off_Run_Ch0.count(*ic) * |
---|
1157 | calibBAO_Off_Run_Ch1.count(*ic) * |
---|
1158 | calibBAO_On_Cycle_Ch0.count(*ic) * |
---|
1159 | calibBAO_On_Cycle_Ch1.count(*ic) * |
---|
1160 | calibBAO_Off_Cycle_Ch0.count(*ic) * |
---|
1161 | calibBAO_Off_Cycle_Ch1.count(*ic) ) != 0 ? true : false; |
---|
1162 | |
---|
1163 | if(para.debuglev_>9) { |
---|
1164 | cout << "Calibration coefficients for cycle "<<*ic << endl; |
---|
1165 | if (isCycleCalibrated) { |
---|
1166 | cout << "Cycle calibrated " << endl; |
---|
1167 | cout << "Off Run Ch0 " << calibBAO_Off_Run_Ch0[*ic] << " " |
---|
1168 | << "Ch1 " << calibBAO_Off_Run_Ch1[*ic] << "\n" |
---|
1169 | << "On Run Ch0 " << calibBAO_On_Run_Ch0[*ic] << " " |
---|
1170 | << "Ch1 " << calibBAO_On_Run_Ch1[*ic] << "\n" |
---|
1171 | << "Off Cycle Ch0 " << calibBAO_Off_Cycle_Ch0[*ic] << " " |
---|
1172 | << "Ch1 " << calibBAO_Off_Cycle_Ch1[*ic] << "\n" |
---|
1173 | << "On Cycle Ch0 " << calibBAO_On_Cycle_Ch0[*ic] << " " |
---|
1174 | << "Ch1 " << calibBAO_On_Cycle_Ch1[*ic] << endl; |
---|
1175 | } else { |
---|
1176 | cout << "Cycle << " << *ic <<" NOT calibrated for file " << *iFile << endl; |
---|
1177 | } |
---|
1178 | }//debug |
---|
1179 | |
---|
1180 | |
---|
1181 | if ( ! isCycleCalibrated ) continue; |
---|
1182 | |
---|
1183 | string ppftag; |
---|
1184 | //load ON phase |
---|
1185 | stringstream cycle; |
---|
1186 | cycle << *ic; |
---|
1187 | |
---|
1188 | ppftag = "specRawOn"+cycle.str(); |
---|
1189 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1190 | fin.GetObject(aSpecOn,ppftag); |
---|
1191 | |
---|
1192 | TMatrix<r_4> aSpecOn_BAOCalibRun(aSpecOn,false); |
---|
1193 | aSpecOn_BAOCalibRun(Range(0),Range::all()) /= calibBAO_On_Run_Ch0[*ic]; |
---|
1194 | aSpecOn_BAOCalibRun(Range(1),Range::all()) /= calibBAO_On_Run_Ch1[*ic]; |
---|
1195 | |
---|
1196 | TMatrix<r_4> aSpecOn_BAOCalibCycle(aSpecOn,false); |
---|
1197 | aSpecOn_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_On_Cycle_Ch0[*ic]; |
---|
1198 | aSpecOn_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_On_Cycle_Ch1[*ic]; |
---|
1199 | |
---|
1200 | //Load OFF phase |
---|
1201 | ppftag = "specRawOff"+cycle.str(); |
---|
1202 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1203 | fin.GetObject(aSpecOff,ppftag); |
---|
1204 | |
---|
1205 | TMatrix<r_4> aSpecOff_BAOCalibRun(aSpecOff,false); |
---|
1206 | aSpecOff_BAOCalibRun(Range(0),Range::all()) /= calibBAO_Off_Run_Ch0[*ic]; |
---|
1207 | aSpecOff_BAOCalibRun(Range(1),Range::all()) /= calibBAO_Off_Run_Ch1[*ic]; |
---|
1208 | |
---|
1209 | TMatrix<r_4> aSpecOff_BAOCalibCycle(aSpecOff,false); |
---|
1210 | aSpecOff_BAOCalibCycle(Range(0),Range::all()) /= calibBAO_Off_Cycle_Ch0[*ic]; |
---|
1211 | aSpecOff_BAOCalibCycle(Range(1),Range::all()) /= calibBAO_Off_Cycle_Ch1[*ic]; |
---|
1212 | |
---|
1213 | |
---|
1214 | //Perform the difference ON-OFF with the different calibration options |
---|
1215 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
1216 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
1217 | |
---|
1218 | //JEC 29/10/11 add ON-OFF/OFF |
---|
1219 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
1220 | TMatrix<r_4> aSpecOffFiltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1221 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
1222 | medianFiltering(aSpecOff,halfWidth,aSpecOffFiltered); |
---|
1223 | |
---|
1224 | diffOnOffOvOff_noCalib.Div(aSpecOffFiltered); //division in place |
---|
1225 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
1226 | |
---|
1227 | TMatrix<r_4> diffOnOff_perRunCalib = aSpecOn_BAOCalibRun - aSpecOff_BAOCalibRun; |
---|
1228 | meanDiffONOFF_perRunCalib += diffOnOff_perRunCalib; |
---|
1229 | |
---|
1230 | TMatrix<r_4> diffOnOff_perCycleCalib = aSpecOn_BAOCalibCycle - aSpecOff_BAOCalibCycle; |
---|
1231 | meanDiffONOFF_perCycleCalib += diffOnOff_perCycleCalib; |
---|
1232 | |
---|
1233 | totalNumberCycles++; |
---|
1234 | |
---|
1235 | //Fill NTuple |
---|
1236 | xnt[0] = totalNumberCycles; |
---|
1237 | |
---|
1238 | //Follow up arround the Calibration Freq. |
---|
1239 | TVector<r_4> meanInRange_CalibFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1240 | meanInRange(diffOnOff_noCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_noCalib); |
---|
1241 | xnt[1] = meanInRange_CalibFreq_noCalib(0); |
---|
1242 | xnt[2] = meanInRange_CalibFreq_noCalib(1); |
---|
1243 | |
---|
1244 | TVector<r_4> meanInRange_CalibFreq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
1245 | meanInRange(diffOnOff_perRunCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perRunCalib); |
---|
1246 | xnt[3] = meanInRange_CalibFreq_perRunCalib(0); |
---|
1247 | xnt[4] = meanInRange_CalibFreq_perRunCalib(1); |
---|
1248 | |
---|
1249 | TVector<r_4> meanInRange_CalibFreq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
1250 | meanInRange(diffOnOff_perCycleCalib,chCalibLow,chCalibHigh,meanInRange_CalibFreq_perCycleCalib); |
---|
1251 | xnt[5] = meanInRange_CalibFreq_perCycleCalib(0); |
---|
1252 | xnt[6] = meanInRange_CalibFreq_perCycleCalib(1); |
---|
1253 | |
---|
1254 | |
---|
1255 | //Follow up arround the 1420.4MHz Freq. |
---|
1256 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1257 | meanInRange(diffOnOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
1258 | xnt[7] = meanInRange_1420Freq_noCalib(0); |
---|
1259 | xnt[8] = meanInRange_1420Freq_noCalib(1); |
---|
1260 | |
---|
1261 | TVector<r_4> meanInRange_1420Freq_perRunCalib(NUMBER_OF_CHANNELS); |
---|
1262 | meanInRange(diffOnOff_perRunCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perRunCalib); |
---|
1263 | xnt[9] = meanInRange_1420Freq_perRunCalib(0); |
---|
1264 | xnt[10] = meanInRange_1420Freq_perRunCalib(1); |
---|
1265 | |
---|
1266 | TVector<r_4> meanInRange_1420Freq_perCycleCalib(NUMBER_OF_CHANNELS); |
---|
1267 | meanInRange(diffOnOff_perCycleCalib,ch1420Low,ch1420High,meanInRange_1420Freq_perCycleCalib); |
---|
1268 | xnt[11] = meanInRange_1420Freq_perCycleCalib(0); |
---|
1269 | xnt[12] = meanInRange_1420Freq_perCycleCalib(1); |
---|
1270 | |
---|
1271 | |
---|
1272 | //Follow up below the 1420.4MHz Freq. |
---|
1273 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1274 | meanInRange(diffOnOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
1275 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1276 | meanInRange(diffOnOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
1277 | |
---|
1278 | xnt[13] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
1279 | xnt[14] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
1280 | |
---|
1281 | |
---|
1282 | TVector<r_4> meanInRange_1420aFreq_perRun(NUMBER_OF_CHANNELS); |
---|
1283 | meanInRange(diffOnOff_perRunCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perRun); |
---|
1284 | TVector<r_4> meanInRange_1420bFreq_perRun(NUMBER_OF_CHANNELS); |
---|
1285 | meanInRange(diffOnOff_perRunCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perRun); |
---|
1286 | |
---|
1287 | xnt[15] = (meanInRange_1420aFreq_perRun(0) + meanInRange_1420bFreq_perRun(0))/2.; |
---|
1288 | xnt[16] = (meanInRange_1420aFreq_perRun(1) + meanInRange_1420bFreq_perRun(1))/2.; |
---|
1289 | |
---|
1290 | |
---|
1291 | TVector<r_4> meanInRange_1420aFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
1292 | meanInRange(diffOnOff_perCycleCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_perCycle); |
---|
1293 | TVector<r_4> meanInRange_1420bFreq_perCycle(NUMBER_OF_CHANNELS); |
---|
1294 | meanInRange(diffOnOff_perCycleCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_perCycle); |
---|
1295 | |
---|
1296 | xnt[17] = (meanInRange_1420aFreq_perCycle(0) + meanInRange_1420bFreq_perCycle(0))/2.; |
---|
1297 | xnt[18] = (meanInRange_1420aFreq_perCycle(1) + meanInRange_1420bFreq_perCycle(1))/2.; |
---|
1298 | |
---|
1299 | |
---|
1300 | //JEC 25/10/11 follow 1400-1420 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
1301 | TVector<r_4> meanInRange_1400a1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1302 | meanInRange(diffOnOff_noCalib,ch1400,ch1420,meanInRange_1400a1420Freq_noCalib); |
---|
1303 | xnt[19] = meanInRange_1400a1420Freq_noCalib(0); |
---|
1304 | xnt[20] = meanInRange_1400a1420Freq_noCalib(1); |
---|
1305 | |
---|
1306 | //JEC 18/11/11 follow up the 1400-1420MHz OFF only |
---|
1307 | TMatrix<r_4> aSpecOffovOff(aSpecOff,false); |
---|
1308 | aSpecOffovOff.Div(aSpecOffFiltered); |
---|
1309 | |
---|
1310 | TVector<r_4> meanInRange_1410a1415Freq_OFF_noCalib(NUMBER_OF_CHANNELS); |
---|
1311 | // meanInRange(aSpecOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1312 | meanInRange(aSpecOffovOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1313 | |
---|
1314 | xnt[21] = meanInRange_1410a1415Freq_OFF_noCalib(0); |
---|
1315 | xnt[22] = meanInRange_1410a1415Freq_OFF_noCalib(1); |
---|
1316 | |
---|
1317 | TMatrix<r_4> aSpecOnovOff(aSpecOn,false); |
---|
1318 | aSpecOnovOff.Div(aSpecOffFiltered); |
---|
1319 | |
---|
1320 | TVector<r_4> meanInRange_1410a1415Freq_ON_noCalib(NUMBER_OF_CHANNELS); |
---|
1321 | //meanInRange(aSpecOn,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1322 | meanInRange(aSpecOnovOff,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1323 | |
---|
1324 | xnt[23] = meanInRange_1410a1415Freq_ON_noCalib(0); |
---|
1325 | xnt[24] = meanInRange_1410a1415Freq_ON_noCalib(1); |
---|
1326 | |
---|
1327 | //store infos to Ntuple |
---|
1328 | onoffevolution.Fill(xnt); |
---|
1329 | |
---|
1330 | //Quit if enough |
---|
1331 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1332 | |
---|
1333 | }//eo loop on cycles |
---|
1334 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1335 | |
---|
1336 | }//eo loop on spectra in a file |
---|
1337 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
1338 | //Normalisation |
---|
1339 | if(totalNumberCycles > 0){ |
---|
1340 | //JEC 29/10 add ON-OFF/OFF |
---|
1341 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1342 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1343 | meanDiffONOFF_perRunCalib /= (r_4)totalNumberCycles; |
---|
1344 | meanDiffONOFF_perCycleCalib /= (r_4)totalNumberCycles; |
---|
1345 | } |
---|
1346 | |
---|
1347 | //Compute the reduced version of the mean and sigma |
---|
1348 | TMatrix<r_4> meanRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1349 | TMatrix<r_4> sigmaRedMtx_noCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1350 | reduceSpectra(meanDiffONOFF_noCalib,meanRedMtx_noCalib,sigmaRedMtx_noCalib); |
---|
1351 | |
---|
1352 | TMatrix<r_4> meanRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1353 | TMatrix<r_4> sigmaRedMtx_perRunCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1354 | reduceSpectra(meanDiffONOFF_perRunCalib,meanRedMtx_perRunCalib,sigmaRedMtx_perRunCalib); |
---|
1355 | |
---|
1356 | TMatrix<r_4> meanRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1357 | TMatrix<r_4> sigmaRedMtx_perCycleCalib(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1358 | reduceSpectra(meanDiffONOFF_perCycleCalib,meanRedMtx_perCycleCalib,sigmaRedMtx_perCycleCalib); |
---|
1359 | |
---|
1360 | {//save the results |
---|
1361 | stringstream tmp; |
---|
1362 | tmp << totalNumberCycles; |
---|
1363 | string fileName = para.outPath_+"/onoffsurvey_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1364 | |
---|
1365 | POutPersist fos(fileName); |
---|
1366 | cout << "Save output in " << fileName << endl; |
---|
1367 | |
---|
1368 | string tag = "meanNoCalib"; |
---|
1369 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
1370 | |
---|
1371 | //JEC 29/10/11 |
---|
1372 | tag = "meanOvOffNoCalib"; |
---|
1373 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
1374 | |
---|
1375 | tag = "meanPerRunCalib"; |
---|
1376 | fos << PPFNameTag(tag) << meanDiffONOFF_perRunCalib; |
---|
1377 | tag = "meanPerCycleCalib"; |
---|
1378 | fos << PPFNameTag(tag) << meanDiffONOFF_perCycleCalib; |
---|
1379 | |
---|
1380 | tag = "redmeanNoCalib"; |
---|
1381 | fos << PPFNameTag(tag) << meanRedMtx_noCalib; |
---|
1382 | tag = "redsigmaNoCalib"; |
---|
1383 | fos << PPFNameTag(tag) << sigmaRedMtx_noCalib; |
---|
1384 | |
---|
1385 | tag = "redmeanPerRunCalib"; |
---|
1386 | fos << PPFNameTag(tag) << meanRedMtx_perRunCalib; |
---|
1387 | tag = "redsigmaPerRunCalib"; |
---|
1388 | fos << PPFNameTag(tag) << sigmaRedMtx_perRunCalib; |
---|
1389 | |
---|
1390 | tag = "redmeanPerCycleCalib"; |
---|
1391 | fos << PPFNameTag(tag) << meanRedMtx_perCycleCalib; |
---|
1392 | tag = "redsigmaPerCycleCalib"; |
---|
1393 | fos << PPFNameTag(tag) << sigmaRedMtx_perCycleCalib; |
---|
1394 | |
---|
1395 | tag = "onoffevol"; |
---|
1396 | fos << PPFNameTag(tag) << onoffevolution; |
---|
1397 | |
---|
1398 | }//end of save |
---|
1399 | |
---|
1400 | |
---|
1401 | } |
---|
1402 | //JEC 14/11/11 New meanRawDiffOnOffCycles START |
---|
1403 | //------------------------------------------------------- |
---|
1404 | //Compute the mean of Diff ON-OFF/OFF from Raw spectra |
---|
1405 | //Used like: |
---|
1406 | // |
---|
1407 | void meanRawDiffOnOffCycles() throw(string) { |
---|
1408 | list<string> listOfFiles; |
---|
1409 | string directoryName; |
---|
1410 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
1411 | |
---|
1412 | //Make the listing of the directory |
---|
1413 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1414 | |
---|
1415 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1416 | iFileEnd = listOfFiles.end(); |
---|
1417 | |
---|
1418 | //mean ON-OFF over the list of cycles |
---|
1419 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/GAIN |
---|
1420 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/Filtered_OFF |
---|
1421 | TMatrix<r_4> meanONovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // ON/Filtered_OFF |
---|
1422 | TMatrix<r_4> meanOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // OFF/Filtered_OFF |
---|
1423 | //Tuple only for RAW things to follow |
---|
1424 | static const int NINFO=25; |
---|
1425 | char* onffTupleName[NINFO]={"cycle" |
---|
1426 | ,"onoffRaw01420","onoffRaw11420" |
---|
1427 | ,"onoffRaw01420side","onoffRaw11420side" |
---|
1428 | ,"onoffRaw0f14101415","onoffRaw1f14101415" |
---|
1429 | ,"offovoffRaw0f14101415","offovoffRaw1f14101415" |
---|
1430 | ,"onovoffRaw0f14101415","onovoffRaw1f14101415" |
---|
1431 | ,"onoffRaw0f14051415","onoffRaw1f14051415" |
---|
1432 | ,"onoffRaw0f14051410","onoffRaw1f14051410" |
---|
1433 | ,"diffonoffRaw0f14051415","diffonoffRaw1f14051415" |
---|
1434 | ,"diffonoffRaw0f14051410","diffonoffRaw1f14051410" |
---|
1435 | ,"diffonoffRaw0f14101415","diffonoffRaw1f14101415" |
---|
1436 | ,"onRaw0f14001415","onRaw1f14001415" |
---|
1437 | ,"offRaw0f14001415","offRaw1f14001415" |
---|
1438 | }; |
---|
1439 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
1440 | r_4 xnt[NINFO]; |
---|
1441 | |
---|
1442 | //Lower and Higher freq. just arround 1420.4MHz Freq. bin to perform mean follow up |
---|
1443 | sa_size_t ch1420Low = freqToChan(1420.4-0.2); |
---|
1444 | sa_size_t ch1420High = freqToChan(1420.4+0.2); |
---|
1445 | |
---|
1446 | //Lower and Higher freq. on the sides of 1420.4Mhz Freq. bin to perform mean follow up |
---|
1447 | sa_size_t ch1420aLow = freqToChan(1418); |
---|
1448 | sa_size_t ch1420aHigh = freqToChan(1419); |
---|
1449 | sa_size_t ch1420bLow = freqToChan(1422); |
---|
1450 | sa_size_t ch1420bHigh = freqToChan(1423); |
---|
1451 | |
---|
1452 | //1400-1420Mhz |
---|
1453 | sa_size_t ch1400 = freqToChan(1400); |
---|
1454 | sa_size_t ch1405 = freqToChan(1405); |
---|
1455 | sa_size_t ch1410 = freqToChan(1410); |
---|
1456 | sa_size_t ch1415 = freqToChan(1415); |
---|
1457 | // sa_size_t ch1420 = freqToChan(1420); |
---|
1458 | |
---|
1459 | if (para.debuglev_>0){ |
---|
1460 | cout << "freq. band for follow up [" << ch1420Low << ", "<< ch1420High << "]" << endl; |
---|
1461 | cout << "freq. band for follow up [" << ch1420aLow << ", "<< ch1420aHigh << "]" << endl; |
---|
1462 | cout << "freq. band for follow up [" << ch1420bLow << ", "<< ch1420bHigh << "]" << endl; |
---|
1463 | } |
---|
1464 | |
---|
1465 | int totalNumberCycles=0; //total number of cycles |
---|
1466 | |
---|
1467 | //Loop on files |
---|
1468 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1469 | if (para.debuglev_>90){ |
---|
1470 | cout << "load file <" << *iFile << ">" << endl; |
---|
1471 | } |
---|
1472 | |
---|
1473 | vector<string> tokens; |
---|
1474 | split(*iFile,"_",tokens); |
---|
1475 | string dateOfRun = tokens[1]; |
---|
1476 | if (para.debuglev_>90){ |
---|
1477 | cout << "date <" << dateOfRun << ">" << endl; |
---|
1478 | } |
---|
1479 | vector<string> tokens2; |
---|
1480 | split(tokens[2],".",tokens2); |
---|
1481 | string srcLower = tokens2[0]; |
---|
1482 | |
---|
1483 | PInPersist fin(*iFile); |
---|
1484 | vector<string> vec = fin.GetNameTags(); |
---|
1485 | |
---|
1486 | vector<string> modeList; |
---|
1487 | modeList.push_back("On"); |
---|
1488 | modeList.push_back("Off"); |
---|
1489 | vector<string>::const_iterator iMode; |
---|
1490 | |
---|
1491 | map<string, list<int> > cycleModeCollect; |
---|
1492 | |
---|
1493 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
1494 | list<string> listOfSpectra; |
---|
1495 | //Keep only required PPF objects |
---|
1496 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
1497 | std::remove_copy_if( |
---|
1498 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
1499 | not1(StringMatch(matchstr)) |
---|
1500 | ); |
---|
1501 | |
---|
1502 | listOfSpectra.sort(stringCompare); |
---|
1503 | iSpecEnd = listOfSpectra.end(); |
---|
1504 | |
---|
1505 | matchstr = "[0-9]+"; |
---|
1506 | //Loop of spectra matrix |
---|
1507 | list<int> listOfCycles; |
---|
1508 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
1509 | int b,e; |
---|
1510 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
1511 | if (para.debuglev_>90){ |
---|
1512 | cout << " spectra <" << *iSpec << ">" << endl; |
---|
1513 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
1514 | } |
---|
1515 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
1516 | }//end loop spectra |
---|
1517 | cycleModeCollect[*iMode] = listOfCycles; |
---|
1518 | }//end of mode |
---|
1519 | |
---|
1520 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
1521 | list<int> commonCycles; |
---|
1522 | set_intersection(cycleModeCollect["On"].begin(), |
---|
1523 | cycleModeCollect["On"].end(), |
---|
1524 | cycleModeCollect["Off"].begin(), |
---|
1525 | cycleModeCollect["Off"].end(), |
---|
1526 | back_inserter(commonCycles) |
---|
1527 | ); |
---|
1528 | |
---|
1529 | if (para.debuglev_>90){ |
---|
1530 | cout << dateOfRun << ": Liste of cycles common to On & Off: <"; |
---|
1531 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
1532 | cout << *i << " "; |
---|
1533 | } |
---|
1534 | cout << ">" << endl; |
---|
1535 | } |
---|
1536 | |
---|
1537 | //Loop on cyles |
---|
1538 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
1539 | |
---|
1540 | // AST 28.11.11 remove non-calibrated cycles for Abell1205 and Abell2440 |
---|
1541 | if ( *ic == 1 && srcLower == "abell1205" ) { |
---|
1542 | if ( dateOfRun == "20110502" || dateOfRun == "20110607" || dateOfRun == "20110818" ) { |
---|
1543 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1544 | continue; |
---|
1545 | } |
---|
1546 | } else if ( *ic == 1 && srcLower == "abell2440" ) { |
---|
1547 | if ( dateOfRun == "20110516" ) { |
---|
1548 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1549 | continue; |
---|
1550 | } |
---|
1551 | } else if ( *ic == 3 && srcLower == "abell1205" ) { |
---|
1552 | if ( dateOfRun == "20110810" ) { |
---|
1553 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
1554 | continue; |
---|
1555 | } |
---|
1556 | } |
---|
1557 | |
---|
1558 | string ppftag; |
---|
1559 | //load ON phase |
---|
1560 | stringstream cycle; |
---|
1561 | cycle << *ic; |
---|
1562 | ppftag = "specRawOn"+cycle.str(); |
---|
1563 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1564 | fin.GetObject(aSpecOn,ppftag); |
---|
1565 | |
---|
1566 | //Load OFF phase |
---|
1567 | ppftag = "specRawOff"+cycle.str(); |
---|
1568 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1569 | fin.GetObject(aSpecOff,ppftag); |
---|
1570 | |
---|
1571 | //Perform the difference ON-OFF |
---|
1572 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
1573 | |
---|
1574 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
1575 | |
---|
1576 | //JEC 29/10/11 add ON-OFF/OFF |
---|
1577 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
1578 | TMatrix<r_4> aSpecOffFiltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1579 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
1580 | medianFiltering(aSpecOff,halfWidth,aSpecOffFiltered); |
---|
1581 | |
---|
1582 | diffOnOffOvOff_noCalib.Div(aSpecOffFiltered); //division in place |
---|
1583 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
1584 | |
---|
1585 | //JEC 15/11/11 add ON/OFF and OFF/OFF |
---|
1586 | TMatrix<r_4> onOvOff(aSpecOn,false); |
---|
1587 | onOvOff.Div(aSpecOffFiltered); |
---|
1588 | meanONovOFF_noCalib += onOvOff; |
---|
1589 | |
---|
1590 | TMatrix<r_4> offOvOff(aSpecOff,false); |
---|
1591 | offOvOff.Div(aSpecOffFiltered); |
---|
1592 | meanOFFovOFF_noCalib += offOvOff; |
---|
1593 | |
---|
1594 | |
---|
1595 | totalNumberCycles++; |
---|
1596 | |
---|
1597 | //Fill NTuple |
---|
1598 | xnt[0] = totalNumberCycles; |
---|
1599 | |
---|
1600 | //Follow up arround the 1420.4MHz Freq. |
---|
1601 | TVector<r_4> meanInRange_1420Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1602 | meanInRange(diffOnOffOvOff_noCalib,ch1420Low,ch1420High,meanInRange_1420Freq_noCalib); |
---|
1603 | xnt[1] = meanInRange_1420Freq_noCalib(0); |
---|
1604 | xnt[2] = meanInRange_1420Freq_noCalib(1); |
---|
1605 | |
---|
1606 | //Follow up below the 1420.4MHz Freq. |
---|
1607 | TVector<r_4> meanInRange_1420aFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1608 | meanInRange(diffOnOffOvOff_noCalib,ch1420aLow,ch1420aHigh,meanInRange_1420aFreq_noCalib); |
---|
1609 | TVector<r_4> meanInRange_1420bFreq_noCalib(NUMBER_OF_CHANNELS); |
---|
1610 | meanInRange(diffOnOffOvOff_noCalib,ch1420bLow,ch1420bHigh,meanInRange_1420bFreq_noCalib); |
---|
1611 | |
---|
1612 | xnt[3] = (meanInRange_1420aFreq_noCalib(0) + meanInRange_1420bFreq_noCalib(0))/2.; |
---|
1613 | xnt[4] = (meanInRange_1420aFreq_noCalib(1) + meanInRange_1420bFreq_noCalib(1))/2.; |
---|
1614 | |
---|
1615 | |
---|
1616 | //JEC 25/10/11 follow 1410-1415 MHz bande protege et n'inclue pas le 1420.4Mhz de la Galaxie |
---|
1617 | TVector<r_4> meanInRange_1410a1415Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1618 | meanInRange(diffOnOffOvOff_noCalib,ch1410,ch1415,meanInRange_1410a1415Freq_noCalib); |
---|
1619 | xnt[5] = meanInRange_1410a1415Freq_noCalib(0); |
---|
1620 | xnt[6] = meanInRange_1410a1415Freq_noCalib(1); |
---|
1621 | |
---|
1622 | //JEC 18/11/11 follow up the 1410-1415MHz OFF only |
---|
1623 | TMatrix<r_4> aSpecOffovOff(aSpecOff,false); |
---|
1624 | aSpecOffovOff.Div(aSpecOffFiltered); |
---|
1625 | |
---|
1626 | TVector<r_4> meanInRange_1410a1415Freq_OFF_noCalib(NUMBER_OF_CHANNELS); |
---|
1627 | meanInRange(aSpecOffovOff,ch1410,ch1415,meanInRange_1410a1415Freq_OFF_noCalib); |
---|
1628 | |
---|
1629 | xnt[7] = meanInRange_1410a1415Freq_OFF_noCalib(0); |
---|
1630 | xnt[8] = meanInRange_1410a1415Freq_OFF_noCalib(1); |
---|
1631 | |
---|
1632 | TMatrix<r_4> aSpecOnovOff(aSpecOn,false); |
---|
1633 | aSpecOnovOff.Div(aSpecOffFiltered); |
---|
1634 | |
---|
1635 | TVector<r_4> meanInRange_1410a1415Freq_ON_noCalib(NUMBER_OF_CHANNELS); |
---|
1636 | meanInRange(aSpecOnovOff,ch1410,ch1415,meanInRange_1410a1415Freq_ON_noCalib); |
---|
1637 | |
---|
1638 | xnt[9] = meanInRange_1410a1415Freq_ON_noCalib(0); |
---|
1639 | xnt[10] = meanInRange_1410a1415Freq_ON_noCalib(1); |
---|
1640 | |
---|
1641 | //AST 09/01/12 follow 1405-1415 and 1405-1410 MHz for (ON-OFF)/OFF_filt |
---|
1642 | TVector<r_4> meanInRange_1405a1415Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1643 | meanInRange(diffOnOffOvOff_noCalib,ch1405,ch1415,meanInRange_1405a1415Freq_noCalib); |
---|
1644 | xnt[11] = meanInRange_1405a1415Freq_noCalib(0); |
---|
1645 | xnt[12] = meanInRange_1405a1415Freq_noCalib(1); |
---|
1646 | |
---|
1647 | TVector<r_4> meanInRange_1405a1410Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
1648 | meanInRange(diffOnOffOvOff_noCalib,ch1405,ch1410,meanInRange_1405a1410Freq_noCalib); |
---|
1649 | xnt[13] = meanInRange_1405a1410Freq_noCalib(0); |
---|
1650 | xnt[14] = meanInRange_1405a1410Freq_noCalib(1); |
---|
1651 | |
---|
1652 | //AST 09/01/12 follow 1405-1415, 1405-1410 and 1410-1415 MHz for (ON-OFF) |
---|
1653 | TVector<r_4> meanInRange_1405a1415Freq_diffOnOff_noCalib(NUMBER_OF_CHANNELS); |
---|
1654 | meanInRange(diffOnOff_noCalib,ch1405,ch1415,meanInRange_1405a1415Freq_diffOnOff_noCalib); |
---|
1655 | xnt[15] = meanInRange_1405a1415Freq_diffOnOff_noCalib(0); |
---|
1656 | xnt[16] = meanInRange_1405a1415Freq_diffOnOff_noCalib(1); |
---|
1657 | |
---|
1658 | TVector<r_4> meanInRange_1405a1410Freq_diffOnOff_noCalib(NUMBER_OF_CHANNELS); |
---|
1659 | meanInRange(diffOnOff_noCalib,ch1405,ch1410,meanInRange_1405a1410Freq_diffOnOff_noCalib); |
---|
1660 | xnt[17] = meanInRange_1405a1410Freq_diffOnOff_noCalib(0); |
---|
1661 | xnt[18] = meanInRange_1405a1410Freq_diffOnOff_noCalib(1); |
---|
1662 | |
---|
1663 | TVector<r_4> meanInRange_1410a1415Freq_diffOnOff_noCalib(NUMBER_OF_CHANNELS); |
---|
1664 | meanInRange(diffOnOff_noCalib,ch1410,ch1415,meanInRange_1410a1415Freq_diffOnOff_noCalib); |
---|
1665 | xnt[19] = meanInRange_1410a1415Freq_diffOnOff_noCalib(0); |
---|
1666 | xnt[20] = meanInRange_1410a1415Freq_diffOnOff_noCalib(1); |
---|
1667 | |
---|
1668 | //AST 10/01/12 follow 1400-1415 MHz ON, OFF (to continue plot on internal notes) |
---|
1669 | TVector<r_4> meanInRange_1400a1415Freq_On_noCalib(NUMBER_OF_CHANNELS); |
---|
1670 | meanInRange(aSpecOn,ch1400,ch1415,meanInRange_1400a1415Freq_On_noCalib); |
---|
1671 | xnt[21] = meanInRange_1400a1415Freq_On_noCalib(0); |
---|
1672 | xnt[22] = meanInRange_1400a1415Freq_On_noCalib(1); |
---|
1673 | TVector<r_4> meanInRange_1400a1415Freq_Off_noCalib(NUMBER_OF_CHANNELS); |
---|
1674 | meanInRange(aSpecOff,ch1400,ch1415,meanInRange_1400a1415Freq_Off_noCalib); |
---|
1675 | xnt[23] = meanInRange_1400a1415Freq_Off_noCalib(0); |
---|
1676 | xnt[24] = meanInRange_1400a1415Freq_Off_noCalib(1); |
---|
1677 | |
---|
1678 | //store infos to Ntuple |
---|
1679 | onoffevolution.Fill(xnt); |
---|
1680 | |
---|
1681 | //Quit if enough |
---|
1682 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1683 | }//end of cycles |
---|
1684 | |
---|
1685 | if (totalNumberCycles >= para.maxNumberCycles_) break; |
---|
1686 | |
---|
1687 | }//end files |
---|
1688 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
1689 | //Normalisation |
---|
1690 | if(totalNumberCycles > 0){ |
---|
1691 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1692 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1693 | meanONovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1694 | meanOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
1695 | } |
---|
1696 | |
---|
1697 | {//save results |
---|
1698 | stringstream tmp; |
---|
1699 | tmp << totalNumberCycles; |
---|
1700 | string fileName; |
---|
1701 | if ( para.ppfFile_ == "dataRawNoGain" ) { |
---|
1702 | fileName = para.outPath_+"/rawOnOffDiffNoGain_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1703 | } else { |
---|
1704 | fileName = para.outPath_+"/rawOnOffDiff_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1705 | } |
---|
1706 | POutPersist fos(fileName); |
---|
1707 | cout << "Save output in " << fileName << endl; |
---|
1708 | |
---|
1709 | string tag = "meanNoCalib"; |
---|
1710 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
1711 | |
---|
1712 | tag = "meanOvOffNoCalib"; |
---|
1713 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
1714 | |
---|
1715 | tag = "meanOnovOffNoCalib"; |
---|
1716 | fos << PPFNameTag(tag) << meanONovOFF_noCalib; |
---|
1717 | |
---|
1718 | tag = "meanOffovOffNoCalib"; |
---|
1719 | fos << PPFNameTag(tag) << meanOFFovOFF_noCalib; |
---|
1720 | |
---|
1721 | tag = "onoffevol"; |
---|
1722 | fos << PPFNameTag(tag) << onoffevolution; |
---|
1723 | |
---|
1724 | }//end save |
---|
1725 | } |
---|
1726 | //JEC 14/11/11 New meanRawDiffOnOffCycles END |
---|
1727 | //------------------------------------------------------- |
---|
1728 | //Compute the median of Diff ON-OFF Raw spectra and also the mean/sigma of rebinned spectra |
---|
1729 | //Used like: |
---|
1730 | // |
---|
1731 | void medianRawDiffOnOffCycles() throw(string) { |
---|
1732 | list<string> listOfFiles; |
---|
1733 | string directoryName; |
---|
1734 | directoryName = para.inPath_ + "/" + para.sourceName_; |
---|
1735 | |
---|
1736 | //Make the listing of the directory |
---|
1737 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1738 | |
---|
1739 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1740 | iFileEnd = listOfFiles.end(); |
---|
1741 | |
---|
1742 | |
---|
1743 | TArray<r_4> tableOfSpectra(NUMBER_OF_FREQ,NUMBER_OF_CHANNELS,para.maxNumberCycles_); //para.maxNumberCycles_ should be large enough... |
---|
1744 | |
---|
1745 | StringMatch match("specONOFFRaw[0-9]+"); //Tag of the PPF objects |
---|
1746 | uint_4 nSpectra=0; |
---|
1747 | //Loop on files |
---|
1748 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1749 | if (para.debuglev_>90){ |
---|
1750 | cout << "load file <" << *iFile << ">" << endl; |
---|
1751 | } |
---|
1752 | PInPersist fin(*iFile); |
---|
1753 | vector<string> vec = fin.GetNameTags(); |
---|
1754 | list<string> listOfSpectra; |
---|
1755 | //Keep only required PPF objects |
---|
1756 | std::remove_copy_if( |
---|
1757 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
1758 | not1(match) |
---|
1759 | ); |
---|
1760 | |
---|
1761 | listOfSpectra.sort(stringCompare); |
---|
1762 | iSpecEnd = listOfSpectra.end(); |
---|
1763 | //Loop of spectra matrix |
---|
1764 | for (iSpec = listOfSpectra.begin(); iSpec !=iSpecEnd && (sa_size_t)nSpectra < para.maxNumberCycles_ ; ++iSpec){ |
---|
1765 | if (para.debuglev_>90){ |
---|
1766 | cout << " spactra <" << *iSpec << ">" << endl; |
---|
1767 | } |
---|
1768 | TMatrix<r_4> aSpec(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1769 | fin.GetObject(aSpec,*iSpec); |
---|
1770 | |
---|
1771 | tableOfSpectra(Range::all(),Range::all(),Range(nSpectra)) = aSpec; |
---|
1772 | |
---|
1773 | nSpectra++; |
---|
1774 | }//eo loop on spectra in a file |
---|
1775 | }//eo loop on files |
---|
1776 | |
---|
1777 | |
---|
1778 | |
---|
1779 | TMatrix<r_4> medianOfSpectra(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
1780 | //Compute the median for each freq. and Channel |
---|
1781 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
1782 | for (sa_size_t freq =0; freq<NUMBER_OF_FREQ; freq++){ |
---|
1783 | TVector<r_4> tmp0(tableOfSpectra(Range(freq),Range(iCh),Range(0,nSpectra-1)).CompactAllDimensions()); |
---|
1784 | vector<r_4> tmp; |
---|
1785 | tmp0.FillTo(tmp); |
---|
1786 | medianOfSpectra(iCh,freq) = median(tmp.begin(),tmp.end()); |
---|
1787 | } |
---|
1788 | } |
---|
1789 | |
---|
1790 | |
---|
1791 | //Compute the reduced version of the mean and sigma |
---|
1792 | TMatrix<r_4> meanRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1793 | TMatrix<r_4> sigmaRedMtx(NUMBER_OF_CHANNELS,para.nSliceInFreq_); |
---|
1794 | reduceSpectra(medianOfSpectra,meanRedMtx,sigmaRedMtx); |
---|
1795 | |
---|
1796 | |
---|
1797 | sa_size_t f1320=freqToChan(1320.); |
---|
1798 | sa_size_t f1345=freqToChan(1345.); |
---|
1799 | sa_size_t f1355=freqToChan(1355.); |
---|
1800 | sa_size_t f1380=freqToChan(1380.); |
---|
1801 | //Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380] |
---|
1802 | if (para.debuglev_>9){ |
---|
1803 | cout << "Compute baseline arround 1350Mhz on [1320-1345] U [1355-1380]" << endl; |
---|
1804 | } |
---|
1805 | TVector<r_4>meanMed(NUMBER_OF_CHANNELS); |
---|
1806 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1807 | double meanMed1; |
---|
1808 | double sigmaMed1; |
---|
1809 | TVector<r_4> band1; |
---|
1810 | band1 = medianOfSpectra(Range(iCh),Range(f1320,f1345)).CompactAllDimensions(); |
---|
1811 | MeanSigma(band1,meanMed1,sigmaMed1); |
---|
1812 | double meanMed2; |
---|
1813 | double sigmaMed2; |
---|
1814 | TVector<r_4> band2; |
---|
1815 | band2 = medianOfSpectra(Range(iCh),Range(f1355,f1380)).CompactAllDimensions(); |
---|
1816 | MeanSigma(band2,meanMed2,sigmaMed2); |
---|
1817 | meanMed(iCh) = (meanMed1+meanMed2)*0.5; |
---|
1818 | } |
---|
1819 | meanMed.Print(cout); |
---|
1820 | cout << endl; |
---|
1821 | |
---|
1822 | |
---|
1823 | //Compute the sigma in the range 1320MHz-1380MHz |
---|
1824 | if (para.debuglev_>9){ |
---|
1825 | cout << "Compute the sigma in the range 1320MHz-1380MHz" << endl; |
---|
1826 | } |
---|
1827 | TVector<r_4>sigmaMed(NUMBER_OF_CHANNELS); |
---|
1828 | sa_size_t redf1320=(sa_size_t)((1320.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
1829 | sa_size_t redf1380=(sa_size_t)((1380.0-LOWER_FREQUENCY)/TOTAL_BANDWIDTH*para.nSliceInFreq_); |
---|
1830 | |
---|
1831 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1832 | double meanSigma; |
---|
1833 | double sigmaSigma; |
---|
1834 | TVector<r_4> band; |
---|
1835 | band = sigmaRedMtx(Range(iCh),Range(redf1320,redf1380)).CompactAllDimensions(); |
---|
1836 | MeanSigma(band,meanSigma,sigmaSigma); |
---|
1837 | meanSigma *= sqrt(para.nSliceInFreq_); //to scale to orignal spectra |
---|
1838 | sigmaMed(iCh) = meanSigma; |
---|
1839 | } |
---|
1840 | sigmaMed.Print(cout); |
---|
1841 | cout << endl; |
---|
1842 | |
---|
1843 | |
---|
1844 | |
---|
1845 | if (para.debuglev_>9){ |
---|
1846 | cout << "Compute medianOfSpectraNorm" << endl; |
---|
1847 | } |
---|
1848 | TMatrix<r_4> medianOfSpectraNorm(medianOfSpectra,false); //do not share the data... |
---|
1849 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
1850 | medianOfSpectraNorm.Row(iCh) -= meanMed(iCh); |
---|
1851 | medianOfSpectraNorm.Row(iCh) /= sigmaMed(iCh); |
---|
1852 | } |
---|
1853 | |
---|
1854 | |
---|
1855 | {//Save the result |
---|
1856 | stringstream tmp; |
---|
1857 | tmp << nSpectra; |
---|
1858 | string fileName = para.outPath_+"/medianDiffOnOffRaw_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
1859 | cout << "Save median based on " << nSpectra << " cycles " << endl; |
---|
1860 | POutPersist fos(fileName); |
---|
1861 | |
---|
1862 | string tag = "median"; |
---|
1863 | fos << PPFNameTag(tag) << medianOfSpectra; |
---|
1864 | |
---|
1865 | tag = "medianNorm"; |
---|
1866 | fos << PPFNameTag(tag) << medianOfSpectraNorm; |
---|
1867 | |
---|
1868 | |
---|
1869 | tag = "meanmedred"; |
---|
1870 | fos << PPFNameTag(tag) << meanRedMtx; |
---|
1871 | tag = "sigmamedred"; |
---|
1872 | fos << PPFNameTag(tag) << sigmaRedMtx; |
---|
1873 | tag = "cycleVsfreq"; |
---|
1874 | |
---|
1875 | TArray<r_4> tarr(tableOfSpectra(Range::all(),Range::all(),Range(0,nSpectra-1))); |
---|
1876 | fos << PPFNameTag(tag) << tarr; |
---|
1877 | } |
---|
1878 | } |
---|
1879 | |
---|
1880 | // AST 5/12/2011 |
---|
1881 | //------------------------------------------------------- |
---|
1882 | // Take all statistics from cluster data to compute Raw sensitivity vs. t_int |
---|
1883 | |
---|
1884 | void meanRawDiffOnOffAllClusters() throw(string) { |
---|
1885 | |
---|
1886 | // Sources names |
---|
1887 | std::vector < std::string > sources; //we'll put all of the tokens in here |
---|
1888 | std::string temp, insources = para.sourceName_; |
---|
1889 | std::cout << insources << std::endl; |
---|
1890 | while (insources.find("-", 0) != std::string::npos) { //does the string a comma in it? |
---|
1891 | size_t pos = insources.find("-", 0); //store the position of the delimiter |
---|
1892 | temp = insources.substr(0, pos); //get the token |
---|
1893 | insources.erase(0, pos + 1); //erase it from the source |
---|
1894 | sources.push_back(temp); //and put it into the array |
---|
1895 | } |
---|
1896 | sources.push_back(insources); //the last token is all alone |
---|
1897 | std::cout << "Processing " << sources.size() << " sources" << std::endl; |
---|
1898 | |
---|
1899 | // Sources max number of cycles |
---|
1900 | std::vector < std::string > cycles; //we'll put all of the tokens in here |
---|
1901 | std::string temp1, incycles = para.maxNumberCyclesStr_; |
---|
1902 | while (incycles.find("-", 0) != std::string::npos) { //does the string a hyphen in it? |
---|
1903 | size_t pos = incycles.find("-", 0); //store the position of the delimiter |
---|
1904 | temp1 = incycles.substr(0, pos); //get the token |
---|
1905 | incycles.erase(0, pos + 1); //erase it from the source |
---|
1906 | cycles.push_back(temp1); //and put it into the array |
---|
1907 | } |
---|
1908 | cycles.push_back(incycles); //the last token is all alone |
---|
1909 | |
---|
1910 | if ( sources.size() != cycles.size() ) { |
---|
1911 | std::cout << "Problem: a max number of cycles for each source must be entered" << std::endl; |
---|
1912 | exit (1); |
---|
1913 | } else { |
---|
1914 | for (uint j=0;j<cycles.size();j++) { |
---|
1915 | cout<<"Source "<<sources.at(j)<<": max "<<cycles.at(j)<<" cycles"<< endl; |
---|
1916 | } |
---|
1917 | } |
---|
1918 | |
---|
1919 | // Begin analysis for each source |
---|
1920 | list<string> listOfFiles,copylistOfFiles; |
---|
1921 | string directoryName; |
---|
1922 | |
---|
1923 | //mean ON-OFF over the list of cycles |
---|
1924 | TMatrix<r_4> meanDiffONOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/GAIN |
---|
1925 | TMatrix<r_4> meanDiffONOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //(ON-OFF)/Filtered_OFF |
---|
1926 | TMatrix<r_4> meanONovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // ON/Filtered_OFF |
---|
1927 | TMatrix<r_4> meanOFFovOFF_noCalib(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); // OFF/Filtered_OFF |
---|
1928 | //Tuple only for RAW things to follow |
---|
1929 | static const int NINFO=11; |
---|
1930 | char* onffTupleName[NINFO]={"srcID","date","run","cycletot","cyclesource" |
---|
1931 | ,"onoffRaw0f14101415","onoffRaw1f14101415" |
---|
1932 | ,"onoffRaw0f141014125","onoffRaw1f141014125" |
---|
1933 | ,"onoffRaw0f14101411","onoffRaw1f14101411" |
---|
1934 | }; |
---|
1935 | NTuple onoffevolution(NINFO,onffTupleName); |
---|
1936 | r_4 xnt[NINFO]; |
---|
1937 | |
---|
1938 | //Loop on Sources |
---|
1939 | int numberCyclesSource; // running number of cycles for each source |
---|
1940 | int maxCyclesSource; // maximum number of cycles for each source |
---|
1941 | int totalNumberRuns=0; //total number of runs (for all clusters) |
---|
1942 | int totalNumberCycles=0; //total number of cycles (for all clusters) |
---|
1943 | std::string dumm; |
---|
1944 | |
---|
1945 | for (uint iSource=0;iSource<sources.size();iSource++){ |
---|
1946 | directoryName = para.inPath_ + "/" + sources.at(iSource); |
---|
1947 | maxCyclesSource = atoi(cycles.at(iSource).c_str()); |
---|
1948 | cout<<"Processing "<< maxCyclesSource<<" cycles for source "<<sources.at(iSource)<<endl; |
---|
1949 | |
---|
1950 | //Make the listing of the directory |
---|
1951 | listOfFiles = ListOfFileInDir(directoryName,para.ppfFile_); |
---|
1952 | cout << "Total number of files loaded..." << listOfFiles.size() << endl; |
---|
1953 | // cout << endl; |
---|
1954 | |
---|
1955 | list<string>::const_iterator iFile, iFileEnd, iSpec, iSpecEnd; |
---|
1956 | iFileEnd = listOfFiles.end(); |
---|
1957 | |
---|
1958 | //1410-1415Mhz |
---|
1959 | sa_size_t ch1410 = freqToChan(1410); |
---|
1960 | sa_size_t ch1411 = freqToChan(1411); |
---|
1961 | sa_size_t ch14125 = freqToChan(1412.5); |
---|
1962 | sa_size_t ch1415 = freqToChan(1415); |
---|
1963 | |
---|
1964 | if (para.debuglev_>0){ |
---|
1965 | cout << "(1) freq. band for follow up [" << ch1410 << ", "<< ch1415 << "]" << endl; |
---|
1966 | cout << "(2) freq. band for follow up [" << ch1410 << ", "<< ch14125 << "]" << endl; |
---|
1967 | cout << "(3) freq. band for follow up [" << ch1410 << ", "<< ch1411 << "]" << endl; |
---|
1968 | } |
---|
1969 | |
---|
1970 | numberCyclesSource=0; //total number of cycles in this source |
---|
1971 | //Loop on files |
---|
1972 | for (iFile = listOfFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
1973 | if (para.debuglev_>90){ |
---|
1974 | cout << "load file <" << *iFile << ">" << endl; |
---|
1975 | } |
---|
1976 | |
---|
1977 | vector<string> tokens; |
---|
1978 | split(*iFile,"_",tokens); |
---|
1979 | string dateOfRun = tokens[1]; |
---|
1980 | r_4 rdateOfRun = atoi(dateOfRun.c_str()) - 2011*1.e4; |
---|
1981 | if (para.debuglev_>90){ |
---|
1982 | cout << "date <" << dateOfRun << ">" << endl; |
---|
1983 | cout << "rdate <" << rdateOfRun << ">" << endl; |
---|
1984 | } |
---|
1985 | vector<string> tokens2; |
---|
1986 | split(tokens[2],".",tokens2); |
---|
1987 | string srcLower = tokens2[0], csrcID; |
---|
1988 | size_t found; |
---|
1989 | found=srcLower.find_first_of("0123456789"); |
---|
1990 | while (found!=string::npos){ |
---|
1991 | csrcID.push_back(srcLower[found]); |
---|
1992 | found=srcLower.find_first_of("0123456789",found+1); |
---|
1993 | } |
---|
1994 | r_4 srcID = atoi(csrcID.c_str()); |
---|
1995 | if (para.debuglev_>1000){ |
---|
1996 | cout << "source <" << srcLower << ">" << endl; |
---|
1997 | cout << "srcID <" << srcID << ">" << endl; |
---|
1998 | } |
---|
1999 | |
---|
2000 | // AST remove bad data of Abell1205 |
---|
2001 | if ( (dateOfRun=="20110822"||dateOfRun=="20110903"||dateOfRun=="20110905"||dateOfRun=="20110912"||dateOfRun=="20110915") && srcLower == "abell1205" ) { |
---|
2002 | cout << ">>> Skipping bad period " << dateOfRun << endl; |
---|
2003 | continue; |
---|
2004 | } |
---|
2005 | |
---|
2006 | PInPersist fin(*iFile); |
---|
2007 | vector<string> vec = fin.GetNameTags(); |
---|
2008 | |
---|
2009 | vector<string> modeList; |
---|
2010 | modeList.push_back("On"); |
---|
2011 | modeList.push_back("Off"); |
---|
2012 | vector<string>::const_iterator iMode; |
---|
2013 | |
---|
2014 | map<string, list<int> > cycleModeCollect; |
---|
2015 | |
---|
2016 | for (iMode = modeList.begin(); iMode!=modeList.end(); ++iMode) { |
---|
2017 | list<string> listOfSpectra; |
---|
2018 | //Keep only required PPF objects |
---|
2019 | string matchstr = "specRaw"+(*iMode)+"[0-9]+"; |
---|
2020 | std::remove_copy_if( |
---|
2021 | vec.begin(), vec.end(), back_inserter(listOfSpectra), |
---|
2022 | not1(StringMatch(matchstr)) |
---|
2023 | ); |
---|
2024 | |
---|
2025 | listOfSpectra.sort(stringCompare); |
---|
2026 | iSpecEnd = listOfSpectra.end(); |
---|
2027 | |
---|
2028 | matchstr = "[0-9]+"; |
---|
2029 | //Loop of spectra matrix |
---|
2030 | list<int> listOfCycles; |
---|
2031 | for (iSpec = listOfSpectra.begin(); iSpec!=iSpecEnd; ++iSpec){ |
---|
2032 | int b,e; |
---|
2033 | regexp(iSpec->c_str(),matchstr.c_str(),&b,&e); |
---|
2034 | if (para.debuglev_>90){ |
---|
2035 | cout << " spectra <" << *iSpec << ">" << endl; |
---|
2036 | cout << " cycle " << iSpec->substr(b) << endl; |
---|
2037 | } |
---|
2038 | listOfCycles.push_back(atoi((iSpec->substr(b)).c_str())); |
---|
2039 | }//end loop spectra |
---|
2040 | cycleModeCollect[*iMode] = listOfCycles; |
---|
2041 | }//end of mode |
---|
2042 | |
---|
2043 | //Take the Intersection of the list Of cycles in mode Off and On |
---|
2044 | list<int> commonCycles; |
---|
2045 | set_intersection(cycleModeCollect["On"].begin(), |
---|
2046 | cycleModeCollect["On"].end(), |
---|
2047 | cycleModeCollect["Off"].begin(), |
---|
2048 | cycleModeCollect["Off"].end(), |
---|
2049 | back_inserter(commonCycles) |
---|
2050 | ); |
---|
2051 | |
---|
2052 | if (para.debuglev_>90){ |
---|
2053 | cout << "Liste of cycles common to On & Off: <"; |
---|
2054 | for (list<int>::iterator i=commonCycles.begin(); i!=commonCycles.end(); ++i){ |
---|
2055 | cout << *i << " "; |
---|
2056 | } |
---|
2057 | cout << ">" << endl; |
---|
2058 | } |
---|
2059 | |
---|
2060 | //Loop on cycles |
---|
2061 | for (list<int>::iterator ic=commonCycles.begin(); ic!=commonCycles.end(); ++ic){ |
---|
2062 | |
---|
2063 | // AST 28.11.11 remove non-calibrated cycles for Abell1205 and Abell2440 |
---|
2064 | if ( *ic == 1 && srcLower == "abell1205" ) { |
---|
2065 | if ( dateOfRun == "20110502" || dateOfRun == "20110607" || dateOfRun == "20110818" ) { |
---|
2066 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
2067 | continue; |
---|
2068 | } |
---|
2069 | } else if ( *ic == 1 && srcLower == "abell2440" ) { |
---|
2070 | if ( dateOfRun == "20110516" ) { |
---|
2071 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
2072 | continue; |
---|
2073 | } |
---|
2074 | } else if ( *ic == 3 && srcLower == "abell1205" ) { |
---|
2075 | if ( dateOfRun == "20110810" ) { |
---|
2076 | cout << "Skipping non-calibrated cycle " << *ic << endl; |
---|
2077 | continue; |
---|
2078 | } |
---|
2079 | } |
---|
2080 | |
---|
2081 | string ppftag; |
---|
2082 | //load ON phase |
---|
2083 | stringstream cycle; |
---|
2084 | cycle << *ic; |
---|
2085 | ppftag = "specRawOn"+cycle.str(); |
---|
2086 | TMatrix<r_4> aSpecOn(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
2087 | fin.GetObject(aSpecOn,ppftag); |
---|
2088 | |
---|
2089 | //Load OFF phase |
---|
2090 | ppftag = "specRawOff"+cycle.str(); |
---|
2091 | TMatrix<r_4> aSpecOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
2092 | fin.GetObject(aSpecOff,ppftag); |
---|
2093 | |
---|
2094 | //Perform the difference ON-OFF |
---|
2095 | TMatrix<r_4> diffOnOff_noCalib = aSpecOn - aSpecOff; |
---|
2096 | meanDiffONOFF_noCalib += diffOnOff_noCalib; |
---|
2097 | |
---|
2098 | TMatrix<r_4> diffOnOffOvOff_noCalib(diffOnOff_noCalib,false); //do not share data |
---|
2099 | TMatrix<r_4> aSpecOffFiltered(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
2100 | sa_size_t halfWidth = 35; //number of freq. bin for the 1/2 width of the filtering window |
---|
2101 | medianFiltering(aSpecOff,halfWidth,aSpecOffFiltered); |
---|
2102 | diffOnOffOvOff_noCalib.Div(aSpecOffFiltered); //division in place |
---|
2103 | meanDiffONOFFovOFF_noCalib += diffOnOffOvOff_noCalib; |
---|
2104 | |
---|
2105 | numberCyclesSource++; |
---|
2106 | totalNumberCycles++; |
---|
2107 | |
---|
2108 | //Fill NTuple |
---|
2109 | xnt[0] = srcID; |
---|
2110 | xnt[1] = rdateOfRun; |
---|
2111 | xnt[2] = totalNumberRuns; |
---|
2112 | xnt[3] = totalNumberCycles; |
---|
2113 | xnt[4] = numberCyclesSource; |
---|
2114 | |
---|
2115 | TVector<r_4> meanInRange_1410a1415Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
2116 | meanInRange(diffOnOffOvOff_noCalib,ch1410,ch1415,meanInRange_1410a1415Freq_noCalib); |
---|
2117 | TVector<r_4> meanInRange_1410a14125Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
2118 | meanInRange(diffOnOffOvOff_noCalib,ch1410,ch14125,meanInRange_1410a14125Freq_noCalib); |
---|
2119 | TVector<r_4> meanInRange_1410a1411Freq_noCalib(NUMBER_OF_CHANNELS); |
---|
2120 | meanInRange(diffOnOffOvOff_noCalib,ch1410,ch1411,meanInRange_1410a1411Freq_noCalib); |
---|
2121 | |
---|
2122 | xnt[5] = meanInRange_1410a1415Freq_noCalib(0); |
---|
2123 | xnt[6] = meanInRange_1410a1415Freq_noCalib(1); |
---|
2124 | xnt[7] = meanInRange_1410a14125Freq_noCalib(0); |
---|
2125 | xnt[8] = meanInRange_1410a14125Freq_noCalib(1); |
---|
2126 | xnt[9] = meanInRange_1410a1411Freq_noCalib(0); |
---|
2127 | xnt[10] = meanInRange_1410a1411Freq_noCalib(1); |
---|
2128 | |
---|
2129 | onoffevolution.Fill(xnt); |
---|
2130 | |
---|
2131 | //Quit if enough |
---|
2132 | if ( numberCyclesSource >= maxCyclesSource ) break; |
---|
2133 | }//end loop on cycles |
---|
2134 | if (numberCyclesSource >= maxCyclesSource) break; |
---|
2135 | totalNumberRuns++; |
---|
2136 | } // end loop on files |
---|
2137 | cout << "End of job on source: we have treated " << numberCyclesSource << " cycles" << endl; |
---|
2138 | } // end loop on sources |
---|
2139 | cout << "End of jobs: we have treated " << totalNumberCycles << " cycles" << endl; |
---|
2140 | |
---|
2141 | //Normalisation |
---|
2142 | if(totalNumberCycles > 0){ |
---|
2143 | meanDiffONOFF_noCalib /= (r_4)totalNumberCycles; |
---|
2144 | meanDiffONOFFovOFF_noCalib /= (r_4)totalNumberCycles; |
---|
2145 | } |
---|
2146 | |
---|
2147 | {//save results |
---|
2148 | stringstream tmp; |
---|
2149 | tmp << totalNumberCycles; |
---|
2150 | string fileName = para.outPath_+"/rawOnOffDiff_"+StringToLower(para.sourceName_)+"-"+tmp.str()+"Cycles.ppf"; |
---|
2151 | |
---|
2152 | POutPersist fos(fileName); |
---|
2153 | cout << "Save output in " << fileName << endl; |
---|
2154 | |
---|
2155 | string tag = "meanNoCalib"; |
---|
2156 | fos << PPFNameTag(tag) << meanDiffONOFF_noCalib; |
---|
2157 | |
---|
2158 | tag = "meanOvOffNoCalib"; |
---|
2159 | fos << PPFNameTag(tag) << meanDiffONOFFovOFF_noCalib; |
---|
2160 | |
---|
2161 | tag = "onoffevol"; |
---|
2162 | fos << PPFNameTag(tag) << onoffevolution; |
---|
2163 | |
---|
2164 | }//end save |
---|
2165 | |
---|
2166 | } |
---|
2167 | |
---|
2168 | //------------------------------------------------------- |
---|
2169 | int main(int narg, char* arg[]) { |
---|
2170 | |
---|
2171 | int rc = 0; //return code |
---|
2172 | string msg; //message used in Exceptions |
---|
2173 | |
---|
2174 | |
---|
2175 | |
---|
2176 | //default value for initial parameters (see Para structure on top of the file) |
---|
2177 | string debuglev = "0"; |
---|
2178 | string action = "meanDiffOnOff"; |
---|
2179 | string inputPath = "."; |
---|
2180 | string outputPath = "."; |
---|
2181 | string sourceName = "Abell85"; |
---|
2182 | string ppfFile; |
---|
2183 | string nSliceInFreq = "32"; |
---|
2184 | string typeOfCalib="perRun"; |
---|
2185 | string calibFreq = "1346"; |
---|
2186 | string calibBandFreq="6.25"; |
---|
2187 | string mxcycles; |
---|
2188 | |
---|
2189 | // bool okarg=false; |
---|
2190 | int ka=1; |
---|
2191 | while (ka<narg) { |
---|
2192 | if (strcmp(arg[ka],"-h")==0) { |
---|
2193 | cout << "Usage: -act [meanRawDiffOnOff]|medianRawDiffOnOff|meanCalibBAODiffOnOff\n" |
---|
2194 | << " -mxcycles <number> (max. number of cycles to be treated) or <list-of-numbers> if several sources are analysed \n" |
---|
2195 | << " -calibfreq <number> (cf. freq. used by calibration operation)\n" |
---|
2196 | << " -calibbandfreq <number> (cf. band of freq. used by calibration operation)\n" |
---|
2197 | << " -src [Abell85] or list of sources [Abell85-Abell1205-Abell2440]\n" |
---|
2198 | << " -inPath [.]|<top_root_dir of the ppf file>\n" |
---|
2199 | << " (ex. /sps/baoradio/AmasNancay/JEC/\n " |
---|
2200 | << " -outPath [.]|<dir of the output> \n" |
---|
2201 | << " -nSliceInFreq [32]|<number of bin in freq. to cumulate>\n" |
---|
2202 | << " -ppfFile <generic name of the input ppf files> (ex. diffOnOffRaw)\n" |
---|
2203 | << " -debug <level> " |
---|
2204 | << endl; |
---|
2205 | return 0; |
---|
2206 | } |
---|
2207 | else if (strcmp(arg[ka],"-debug")==0) { |
---|
2208 | debuglev=arg[ka+1]; |
---|
2209 | ka+=2; |
---|
2210 | } |
---|
2211 | else if (strcmp(arg[ka],"-act")==0) { |
---|
2212 | action=arg[ka+1]; |
---|
2213 | ka+=2; |
---|
2214 | } |
---|
2215 | else if (strcmp(arg[ka],"-calibfreq")==0) { |
---|
2216 | calibFreq=arg[ka+1]; |
---|
2217 | ka+=2; |
---|
2218 | } |
---|
2219 | else if (strcmp(arg[ka],"-calibbandfreq")==0) { |
---|
2220 | calibBandFreq=arg[ka+1]; |
---|
2221 | ka+=2; |
---|
2222 | } |
---|
2223 | else if (strcmp(arg[ka],"-mxcycles")==0) { |
---|
2224 | mxcycles=arg[ka+1]; |
---|
2225 | ka+=2; |
---|
2226 | } |
---|
2227 | else if (strcmp(arg[ka],"-inPath")==0) { |
---|
2228 | inputPath=arg[ka+1]; |
---|
2229 | ka+=2; |
---|
2230 | } |
---|
2231 | else if (strcmp(arg[ka],"-outPath")==0) { |
---|
2232 | outputPath=arg[ka+1]; |
---|
2233 | ka+=2; |
---|
2234 | } |
---|
2235 | else if (strcmp(arg[ka],"-src")==0) { |
---|
2236 | sourceName=arg[ka+1]; |
---|
2237 | ka+=2; |
---|
2238 | } |
---|
2239 | else if (strcmp(arg[ka],"-ppfFile")==0) { |
---|
2240 | ppfFile=arg[ka+1]; |
---|
2241 | ka+=2; |
---|
2242 | } |
---|
2243 | else if (strcmp(arg[ka],"-nSliceInFreq")==0) { |
---|
2244 | nSliceInFreq=arg[ka+1]; |
---|
2245 | ka+=2; |
---|
2246 | } |
---|
2247 | else ka++; |
---|
2248 | }//eo while |
---|
2249 | |
---|
2250 | para.debuglev_ = atoi(debuglev.c_str()); |
---|
2251 | para.inPath_ = inputPath; |
---|
2252 | para.outPath_ = outputPath; |
---|
2253 | para.sourceName_ = sourceName; |
---|
2254 | para.ppfFile_ = ppfFile; |
---|
2255 | para.nSliceInFreq_ = atoi(nSliceInFreq.c_str()); |
---|
2256 | para.calibFreq_ = calibFreq; |
---|
2257 | para.calibBandFreq_ = calibBandFreq; |
---|
2258 | para.rcalibFreq_ = atof(calibFreq.c_str()); |
---|
2259 | para.rcalibBandFreq_ = atof(calibBandFreq.c_str()); |
---|
2260 | if (mxcycles != "") { |
---|
2261 | para.maxNumberCycles_ = atoi(mxcycles.c_str()); |
---|
2262 | para.maxNumberCyclesStr_ = mxcycles; |
---|
2263 | } else { |
---|
2264 | para.maxNumberCycles_ = std::numeric_limits<int>::max(); |
---|
2265 | para.maxNumberCyclesStr_ = "500"; |
---|
2266 | } |
---|
2267 | |
---|
2268 | cout << "Dump Initial parameters ............" << endl; |
---|
2269 | cout << " action = " << action << "\n" |
---|
2270 | << " maxNumberCycles = " << para.maxNumberCycles_ << "\n" |
---|
2271 | << " inputPath = " << para.inPath_ << "\n" |
---|
2272 | << " outputPath = " << para.outPath_ << "\n" |
---|
2273 | << " sourceName = " << para.sourceName_ << "\n" |
---|
2274 | << " ppfFile = " << para.ppfFile_ << "\n" |
---|
2275 | << " nSliceInFreq = " << para.nSliceInFreq_ << "\n" |
---|
2276 | << " calibFreq = " << para.calibFreq_ << "\n" |
---|
2277 | << " calibBandFreq = " << para.calibBandFreq_ << "\n" |
---|
2278 | << " debuglev = " << para.debuglev_ << "\n"; |
---|
2279 | cout << "...................................." << endl; |
---|
2280 | |
---|
2281 | if ( "" == ppfFile ) { |
---|
2282 | cerr << "mergeAnaFiles.cc: you have forgotten ppfFile option" |
---|
2283 | << endl; |
---|
2284 | return 999; |
---|
2285 | } |
---|
2286 | |
---|
2287 | |
---|
2288 | try { |
---|
2289 | |
---|
2290 | // int b,e; |
---|
2291 | // char *match=regexp("truc0machin","[a-z]+[0-9]*",&b,&e); |
---|
2292 | // printf("->%s<-\n(b=%d e=%d)\n",match,b,e); |
---|
2293 | |
---|
2294 | if ( action == "meanRawDiffOnOff" ) { |
---|
2295 | meanRawDiffOnOffCycles(); |
---|
2296 | } else if (action == "medianRawDiffOnOff") { |
---|
2297 | medianRawDiffOnOffCycles(); |
---|
2298 | } else if (action == "meanCalibBAODiffOnOff") { |
---|
2299 | meanCalibBAODiffOnOffCycles(); |
---|
2300 | } else if (action == "calibCoeffNtp") { |
---|
2301 | calibCoeffNtp(); |
---|
2302 | } else if (action == "meanRawDiffOnOffAllClusters") { |
---|
2303 | meanRawDiffOnOffAllClusters(); |
---|
2304 | } else { |
---|
2305 | msg = "Unknown action " + action; |
---|
2306 | throw msg; |
---|
2307 | } |
---|
2308 | |
---|
2309 | |
---|
2310 | } catch (std::exception& sex) { |
---|
2311 | cerr << "mergeRawOnOff.cc std::exception :" << (string)typeid(sex).name() |
---|
2312 | << "\n msg= " << sex.what() << endl; |
---|
2313 | rc = 78; |
---|
2314 | } |
---|
2315 | catch ( string str ) { |
---|
2316 | cerr << "mergeRawOnOff.cc Exception raised: " << str << endl; |
---|
2317 | } |
---|
2318 | catch (...) { |
---|
2319 | cerr << "mergeRawOnOff.cc catched unknown (...) exception " << endl; |
---|
2320 | rc = 79; |
---|
2321 | } |
---|
2322 | |
---|
2323 | return 0; |
---|
2324 | |
---|
2325 | } |
---|