| 1 | #!/bin/sh -xvf
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| 2 | #Basic tuning of system fuction used.
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| 3 | AWK=/bin/awk
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| 4 | SED=/bin/sed
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| 5 | GREP=/bin/grep
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| 6 | WC=/usr/bin/wc
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| 7 | RM=/bin/rm
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| 8 | CAT=/bin/cat
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| 9 | TOUCH=/bin/touch
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| 10 | DATE=/bin/date
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| 11 | ECHO=/bin/echo
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| 12 | LS=/bin/ls
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| 13 | MKDIR=/bin/mkdir
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| 14 | TR=/usr/bin/tr
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| 15 | FIND=/usr/bin/find
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| 16 | PRINTF=/usr/bin/printf
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| 17 | XARGS=/usr/bin/xargs
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| 18 | SORT=/bin/sort
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| 19 | QSUB=qsub
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| 20 |
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| 21 | DefaultIFS=$' \t\n'
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| 22 | IFS=$DefaultIFS
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| 23 |
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| 24 |
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| 25 | scriptName="`basename $0`"
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| 26 | $ECHO "Processing script ${scriptName} at `date`"
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| 27 | ######
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| 28 | # Local functions
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| 29 | ######
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| 30 | usage() {
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| 31 | echo "usage: $scriptName <source> <YYYYMMDD-directory> <type of process>"
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| 32 | echo " -<source> as Abell85"
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| 33 | echo " -<YYYYMMDD-directory> as 20110428"
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| 34 | echo " -<type of process> as GAIN|CALIBON|CALIBOFF|ON|OFF"
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| 35 | echo " as GAINDS|ONDS"
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| 36 | }
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| 37 | ######
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| 38 | # argument test
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| 39 | ######
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| 40 |
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| 41 | #Process cmd line args: the -src option is mandatory (source name as Abell85)
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| 42 | #action: gain|mspec (gain: gain-like doucble median filtering
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| 43 | # mspec: mean+sigma wo filetring)
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| 44 | action="gain"
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| 45 | sourceRadio=
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| 46 | dateSelected=
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| 47 | typeofproc=
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| 48 | #use -sim option to simulate processing (debug the script as if...)
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| 49 | simulationMode=Off
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| 50 | #
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| 51 | #first and last cycle to process
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| 52 | #
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| 53 | firstCycle=
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| 54 | lastCycle=
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| 55 | while [ $# -gt 0 ]
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| 56 | do
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| 57 | case "$1" in
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| 58 | -act) action=$2; shift;;
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| 59 | -src) sourceRadio=$2; shift;;
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| 60 | -date) dateSelected=$2; shift;;
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| 61 | -type) typeofproc=$2; shift;;
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| 62 | -fcycle) firstCycle=$2; shift;;
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| 63 | -lcycle) lastCycle=$2; shift;;
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| 64 | -sim) simulationMode=On;;
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| 65 | -h)
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| 66 | echo >&2 \
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| 67 | "usage: $0 [-act <action> ] -src souce -date YYYYMMDD -type type [-fcycle firstCycle] [-lcycle lastCycle] [-sim to trig simulation mode]"
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| 68 | exit 1;;
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| 69 | *) break;; # terminate while loop
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| 70 | esac
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| 71 | shift
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| 72 | done
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| 73 |
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| 74 | #Check input
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| 75 |
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| 76 | if [ "<${sourceRadio}>" = "<>" ]; then
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| 77 | $ECHO "FATAL: You have forgotten to select the source option (-src)"
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| 78 | exit 1
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| 79 | fi
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| 80 |
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| 81 | if [ "<${dateSelected}>" = "<>" ]; then
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| 82 | $ECHO "FATAL: You have forgotten to select the date option (-date)"
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| 83 | exit 1
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| 84 | fi
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| 85 |
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| 86 | if [ "<${typeofproc}>" = "<>" ]; then
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| 87 | $ECHO "FATAL: You have forgotten to select the type option (-type)"
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| 88 | exit 1
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| 89 |
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| 90 | fi
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| 91 |
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| 92 |
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| 93 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" `
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| 94 |
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| 95 |
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| 96 | #Path to public backupable path
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| 97 | publicpath="/afs/in2p3.fr/home/c/campagne/public"
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| 98 |
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| 99 | #temporary files to synchronize scripts
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| 100 | tmppublicpath=${TMPPUBLICPATH}
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| 101 | $LS -l ${tmppublicpath} > /dev/null
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| 102 |
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| 103 |
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| 104 | #Path where the job will do temporary IO
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| 105 | . ${SCRIPTPATH}/set_iojobpath.sh
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| 106 | iojobpath=$(set_iojobpath)
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| 107 | cd ${iojobpath}
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| 108 |
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| 109 | localpath="${sourceRadio}/${dateSelected}${srclower}"
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| 110 | $MKDIR -p ./${localpath}
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| 111 | cd ./${localpath}
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| 112 | mainDirectory=`pwd`
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| 113 |
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| 114 |
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| 115 | #Path of the utility scripts
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| 116 | scriptpath=${SCRIPTPATH}
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| 117 |
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| 118 |
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| 119 | #select file per cycle
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| 120 | #$ECHO "Select files process..."
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| 121 | #keep only lines with structure: cycle_number first,last,step
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| 122 | #Get sca files
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| 123 | $ECHO "DEBUG (${scriptName}): START call getscafiles.sh ${sourceRadio} ${dateSelected}"
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| 124 | OUT1=./getScaStatus.$$
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| 125 | #JEC 29/9/11 avoid finished stuff
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| 126 | #$RM -f ${tmppublicpath}/getscafiles.finished
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| 127 | ${scriptpath}/getscafiles.sh ${sourceRadio} ${dateSelected} > ${OUT1} 2>&1
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| 128 | #while [ ! -f "${tmppublicpath}/getscafiles.finished" ]; do
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| 129 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/getscafiles.finished"
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| 130 | # date +%T
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| 131 | # sleep 30
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| 132 | #done
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| 133 | #$RM -f ${tmppublicpath}/getscafiles.finished
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| 134 | $ECHO "DEBUG (${scriptName}): END"
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| 135 |
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| 136 |
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| 137 | getScaStatus=`$GREP "^\(FATAL\|ERROR\)" ${OUT1}`
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| 138 |
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| 139 | if [ "<${getScaStatus}>" != "<>" ]; then
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| 140 | $ECHO "FATAL (${scriptName}): error to get sca file for $sourceRadio $dateSelected"
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| 141 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}"
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| 142 | $CAT ${OUT1}
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| 143 | $ECHO "DEBUG (${scriptName}): END"
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| 144 | exit 1
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| 145 | fi
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| 146 |
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| 147 |
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| 148 | scaFileSummarized=`$FIND . -name "sca*.sum" -print`
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| 149 | if [ "<${scaFileSummarized}>" = "<>" ]; then
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| 150 | $ECHO "FATAL (${scriptName}): strange sca file summarized not available: $sourceRadio $dateSelected"
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| 151 | $ECHO "DEBUG (${scriptName}): START with cat ${OUT1}"
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| 152 | $CAT ${OUT1}
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| 153 | $ECHO "DEBUG (${scriptName}): END"
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| 154 | exit 1
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| 155 | fi
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| 156 | $RM ${OUT1}
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| 157 |
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| 158 | scaFileSummarized=`basename $scaFileSummarized`
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| 159 |
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| 160 | #set Irods environment
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| 161 | . /usr/local/shared/bin/irods_env.sh -noverbose
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| 162 | #download header files to be used for signal files selction
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| 163 | $MKDIR -p ./Fiber1
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| 164 | dirFiberfile=`pwd`/Fiber1
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| 165 |
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| 166 | dirIrods="/baoradio/data/AmasNancay/${sourceRadio}/${dateSelected}${srclower}/Fiber1"
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| 167 |
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| 168 | listOfFiles=( `ils ${dirIrods} | $GREP -i "header" | $XARGS -i basename {} | $SORT -k1.7n` )
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| 169 | IFS='
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| 170 | '
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| 171 | listOfFiles=( $( $PRINTF "%s\n" "${listOfFiles[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 172 | IFS=$DefaultIFS
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| 173 |
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| 174 | #
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| 175 | $ECHO "DEBUG (${scriptName}): Download if necessary the headers"
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| 176 | #
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| 177 | for ifile in ${listOfFiles[@]}
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| 178 | do
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| 179 | #test if the headers have not yet been downloaded
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| 180 | if [ ! -e ${dirFiberfile}/${ifile} ]; then
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| 181 | OUT2=./getheaders.$$
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| 182 | iget -f -K ${dirIrods}/${ifile} ${dirFiberfile} >${OUT2} 2>&1
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| 183 | igetStatus=`$GREP "^ERROR" ${OUT2}`
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| 184 | if [ "<$igetStatus>" != "<>" ]; then
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| 185 | $ECHO "FATAL (${scriptName}): error while iget:"
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| 186 | $ECHO $igetStatus
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| 187 | exit 1
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| 188 | fi
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| 189 | $RM -f $OUT2
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| 190 | fi
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| 191 | done
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| 192 | #
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| 193 | $ECHO "DEBUG (${scriptName}): START call select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc}"
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| 194 | #
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| 195 | #Get list of file to process
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| 196 | headerFileSelected=./selectSignal.$$
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| 197 | #JEC 29/9/11 avoid finished stuff
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| 198 | #$RM -f ${tmppublicpath}/select.finished
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| 199 | ${scriptpath}/select.sh ${scaFileSummarized} ${dirFiberfile} ${typeofproc} | $GREP "^#[0-9]" | $SED "s/^#//" > $headerFileSelected
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| 200 | #while [ ! -f "${tmppublicpath}/select.finished" ]; do
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| 201 | # $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/select.finished"
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| 202 | # date +%T
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| 203 | # sleep 30
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| 204 | #done
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| 205 | #$RM ${tmppublicpath}/select.finished
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| 206 | #
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| 207 | $ECHO "DEBUG (${scriptName}): END"
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| 208 | #
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| 209 | $ECHO "DEBUG (${scriptName}): START filling cycleArray, filesArray"
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| 210 | #
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| 211 | declare -a cycleArray
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| 212 | declare -a filesArray
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| 213 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>"
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| 214 | IFS=$DefaultIFS
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| 215 | $ECHO "DEBUG (${scriptName}): START cat $headerFileSelected"
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| 216 | $CAT $headerFileSelected
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| 217 | $ECHO "DEBUG (${scriptName}): END cat $headerFileSelected"
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| 218 |
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| 219 | while read v1 v2
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| 220 | do
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| 221 | cycleArray[${#cycleArray[*]}]=$v1
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| 222 | filesArray[${#filesArray[*]}]=$v2
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| 223 | done < $headerFileSelected
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| 224 |
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| 225 | if [ ${#cycleArray[*]} -eq 0 -o ${#filesArray[*]} -eq 0 ]; then
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| 226 | $ECHO "FATAL (${scriptName}): no header file selected (${#cycleArray[*]}, ${#filesArray[*]})"
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| 227 | exit 1
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| 228 | else
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| 229 | $ECHO "DEBUG (${scriptName}): non zero elements found for cycleArray and filesArray"
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| 230 | fi
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| 231 |
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| 232 | #
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| 233 | $ECHO "DEBUG (${scriptName}): number of elements <${#cycleArray[*]}> <${#filesArray[*]}>"
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| 234 | $ECHO "DEBUG (${scriptName}): END"
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| 235 | #
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| 236 | # (timeShift)
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| 237 | #Add 3sec to start ON / OFF
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| 238 | #Substract 4sec to start DAB ON / OFF
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| 239 | #
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| 240 | #Take care: Cycle numbering starts at 1 in SCAFiles while Arrays index start at 0
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| 241 | #
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| 242 | #for GAIN the reference cycle takes the middle of the run
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| 243 | #
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| 244 | #nwinmean donne le nombre de fenetre tspwin utilise pour faire calculer la moyenne des medianes de chaque fenetre
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| 245 | #This is the nimber of paquets of the time window which change according to processing type
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| 246 | $ECHO "DEBUG (${scriptName}): START switch on $typeofproc"
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| 247 | #
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| 248 | case "$typeofproc" in
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| 249 | GAIN)
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| 250 | $ECHO "process signal files for GAIN phase"
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| 251 | ingain=""
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| 252 | freqfilter="-freqfilter -"
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| 253 | nwinmean="1"
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| 254 | tspwin="5120"
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| 255 | dirName="Off"
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| 256 | cyclebasename="gaincycle"
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| 257 | indexStartHour="6"
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| 258 | timeShift="-4"
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| 259 | timeDuration="14"
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| 260 | firstCycleId=`expr ${#cycleArray[*]} / 2`
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| 261 | firstCycleId=`expr ${firstCycleId} - 1`
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| 262 | lastp1CycleId=`expr ${firstCycleId} + 1`
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| 263 | ;;
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| 264 | GAINDS)
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| 265 | $ECHO "process signal files for GAIN DRIFT SCAN phases"
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| 266 | ingain=""
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| 267 | freqfilter="-freqfilter -"
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| 268 | nwinmean="1"
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| 269 | tspwin="5120"
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| 270 | dirName="Off"
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| 271 | cyclebasename="gaincycle"
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| 272 | indexStartHour="2"
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| 273 | timeShift="-4"
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| 274 | timeDuration="14"
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| 275 | firstCycleId=`expr ${#cycleArray[*]} / 2`
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| 276 | firstCycleId=`expr ${firstCycleId} - 1`
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| 277 | lastp1CycleId=`expr ${firstCycleId} + 1`
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| 278 | ;;
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| 279 | GAINNF)
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| 280 | $ECHO "process signal files for GAIN phase wo Freq FILTERING"
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| 281 | ingain=""
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| 282 | freqfilter="-freqfilter 4"
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| 283 | nwinmean="1"
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| 284 | tspwin="5120"
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| 285 | dirName="Off"
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| 286 | cyclebasename="gainf4cycle"
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| 287 | indexStartHour="6"
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| 288 | timeShift="-4"
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| 289 | timeDuration="14"
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| 290 | firstCycleId=`expr ${#cycleArray[*]} / 2`
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| 291 | firstCycleId=`expr ${firstCycleId} - 1`
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| 292 | lastp1CycleId=`expr ${firstCycleId} + 1`
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| 293 | ;;
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| 294 | ON)
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| 295 | $ECHO "process signal files for ON phases"
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| 296 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 297 | freqfilter=""
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| 298 | nwinmean="5"
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| 299 | tspwin="5120"
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| 300 | dirName="On"
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| 301 | cyclebasename="datacycle"
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| 302 | indexStartHour="4"
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| 303 | timeShift="3"
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| 304 | timeDuration="30"
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| 305 | firstCycleId="0"
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| 306 | lastp1CycleId="${#cycleArray[@]}"
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| 307 | ;;
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| 308 | ONDS)
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| 309 | $ECHO "process signal files for ON Drift Scan phases"
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| 310 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 311 | freqfilter=""
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| 312 | nwinmean="1"
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| 313 | tspwin="5120"
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| 314 | dirName="On"
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| 315 | cyclebasename="datacycle"
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| 316 | indexStartHour="4"
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| 317 | timeShift="3"
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| 318 | timeDuration="170"
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| 319 | firstCycleId="0"
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| 320 | lastp1CycleId="${#cycleArray[@]}"
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| 321 | ;;
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| 322 | OFF)
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| 323 | $ECHO "process signal files for OFF phases"
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| 324 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 325 | freqfilter=""
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| 326 | nwinmean="5"
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| 327 | tspwin="5120"
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| 328 | dirName="Off"
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| 329 | cyclebasename="datacycle"
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| 330 | indexStartHour="8"
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| 331 | timeShift="3"
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| 332 | timeDuration="30"
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| 333 | firstCycleId="0"
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| 334 | lastp1CycleId="${#cycleArray[@]}"
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| 335 | ;;
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| 336 | MEANOFF)
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| 337 | $ECHO "process signal files for OFF phases (MEAN)"
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| 338 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 339 | freqfilter=""
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| 340 | nwinmean="25000"
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| 341 | tspwin="0"
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| 342 | dirName="Off"
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| 343 | cyclebasename="meancycle"
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| 344 | indexStartHour="8"
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| 345 | timeShift="3"
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| 346 | timeDuration="30"
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| 347 | firstCycleId="0"
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| 348 | lastp1CycleId="${#cycleArray[@]}"
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| 349 | ;;
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| 350 | MEANON)
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| 351 | $ECHO "process signal files for ON phases (MEAN)"
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| 352 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 353 | freqfilter=""
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| 354 | nwinmean="25000"
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| 355 | tspwin="0"
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| 356 | dirName="On"
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| 357 | cyclebasename="meancycle"
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| 358 | indexStartHour="4"
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| 359 | timeShift="3"
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| 360 | timeDuration="30"
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| 361 | firstCycleId="0"
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| 362 | lastp1CycleId="${#cycleArray[@]}"
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| 363 | ;;
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| 364 | CALIBON)
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| 365 | $ECHO "process signal files for CALIBRATION ON phases"
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| 366 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 367 | freqfilter="-freqfilter -"
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| 368 | nwinmean="1"
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| 369 | tspwin="1024"
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| 370 | dirName="On"
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| 371 | cyclebasename="calibcycle"
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| 372 | indexStartHour="2"
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| 373 | timeShift="-4"
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| 374 | timeDuration="14"
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| 375 | firstCycleId="0"
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| 376 | lastp1CycleId="${#cycleArray[@]}"
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| 377 | ;;
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| 378 | CALIBOFF)
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| 379 | $ECHO "process signal files for CALIBRATION OFF phases"
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| 380 | ingain="-gain gain_${dateSelected}_${srclower}.fits"
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| 381 | freqfilter="-freqfilter -"
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| 382 | nwinmean="1"
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| 383 | tspwin="1024"
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| 384 | dirName="Off"
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| 385 | cyclebasename="calibcycle"
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| 386 | indexStartHour="6"
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| 387 | timeShift="-4"
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| 388 | timeDuration="14"
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| 389 | firstCycleId="0"
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| 390 | lastp1CycleId="${#cycleArray[@]}"
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| 391 | ;;
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| 392 | *)
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| 393 | $ECHO "FATAL (${scriptName}): type of processing"
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| 394 | usage
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| 395 | exit 1
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| 396 | ;;
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| 397 | esac
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| 398 | #
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| 399 | $ECHO "DEBUG (${scriptName}): END"
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| 400 | #
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| 401 | #
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| 402 | #Compute time windows (Warning usage of GMT date)
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| 403 | #
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| 404 | $ECHO "DEBUG (${scriptName}): START compute time windows"
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| 405 | OUT=./baotiming.$$
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| 406 | ${AWK} -v datesys=${DATE} -v type=${indexStartHour} -v shift=${timeShift} '
|
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| 407 | BEGIN {FS=","}
|
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| 408 | {
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| 409 | phaseStart=$type
|
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| 410 | cmd=sprintf("%s +%%s -d \"%s\" ",datesys,phaseStart);
|
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| 411 | (cmd | getline phstart);
|
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| 412 | close(cmd);
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| 413 | newstart = phstart+shift;
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| 414 | cmd=sprintf("%s +%%T -d \"1970-01-01 %s sec GMT\"",datesys,newstart);
|
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| 415 | (cmd | getline newStart);
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| 416 | close(cmd);
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| 417 | print $1,newStart,phaseStart;
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| 418 | }
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| 419 | ' ${scaFileSummarized} > ${OUT}
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| 420 | #
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| 421 | $ECHO "DEBUG (${scriptName}): END"
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| 422 | #
|
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| 423 | $ECHO "DEBUG (${scriptName}): START cat ${OUT}"
|
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| 424 | $CAT ${OUT}
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| 425 | $ECHO "DEBUG (${scriptName}): END cat ${OUT}"
|
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| 426 | #
|
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| 427 | $ECHO "DEBUG (${scriptName}): START filling cycleArrayBis timeArray"
|
|---|
| 428 | #
|
|---|
| 429 | declare -a cycleArrayBis
|
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| 430 | declare -a timeArray
|
|---|
| 431 | $ECHO "DEBUG (${scriptName}): IFS value between<>: <$IFS>"
|
|---|
| 432 | IFS=$DefaultIFS
|
|---|
| 433 | #select the selected cycles
|
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| 434 | idtofind="0"
|
|---|
| 435 | while read v1 v2 v3
|
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| 436 | do
|
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| 437 | if [ ${idtofind} -lt ${#cycleArray[*]} ]; then
|
|---|
| 438 | if [ ${v1} = ${cycleArray[${idtofind}]} ]; then
|
|---|
| 439 | cycleArrayBis[${#cycleArrayBis[*]}]=$v1
|
|---|
| 440 | timeArray[${#timeArray[*]}]=$v2
|
|---|
| 441 | idtofind=`expr ${idtofind} + 1`
|
|---|
| 442 | fi
|
|---|
| 443 | fi
|
|---|
| 444 | done < ${OUT}
|
|---|
| 445 | $ECHO "DEBUG (${scriptName}): number of elements ${#cycleArrayBis[*]} ${#timeArray[*]}"
|
|---|
| 446 | $ECHO "DEBUG (${scriptName}): END"
|
|---|
| 447 |
|
|---|
| 448 |
|
|---|
| 449 | #########################
|
|---|
| 450 | # specmfib exe
|
|---|
| 451 | #########################
|
|---|
| 452 | prg="/afs/in2p3.fr/throng/baoradio/Library/Progs/TAcq/Objs/specmfib"
|
|---|
| 453 | if [ ! -e $prg ]; then
|
|---|
| 454 | $ECHO "FATAL (${scriptName}): $prg not found"
|
|---|
| 455 | exit 1
|
|---|
| 456 | fi
|
|---|
| 457 |
|
|---|
| 458 |
|
|---|
| 459 | dirFiberfile=${iojobpath}/${localpath}
|
|---|
| 460 |
|
|---|
| 461 | curDir=`pwd`
|
|---|
| 462 | #
|
|---|
| 463 | $ECHO "DEBUG (${scriptName}): in principle $dirFiberfile == $curDir "
|
|---|
| 464 | #
|
|---|
| 465 | #force single channel
|
|---|
| 466 | forceSingle="-singlechan"
|
|---|
| 467 | #debug
|
|---|
| 468 | prtlevel="1"
|
|---|
| 469 |
|
|---|
| 470 |
|
|---|
| 471 | #Loop on cycles
|
|---|
| 472 | ##
|
|---|
| 473 | $ECHO "DEBUG (${scriptName}): START loop on cycles Ids ${firstCycleId} to ${lastp1CycleId}"
|
|---|
| 474 |
|
|---|
| 475 | #write the script to be send to Batch
|
|---|
| 476 | #get gain file if necessary
|
|---|
| 477 | if [ ${typeofproc} != "GAIN" -a ${typeofproc} != "GAINDS" ]; then
|
|---|
| 478 | OUT2=./igetStatus.$$
|
|---|
| 479 | iget /baoradio/data/AmasNancay/${localpath}/gain_${dateSelected}_${srclower}.fits >${OUT2} 2>&1
|
|---|
| 480 | igetStatus=`$GREP "^ERROR" ${OUT2}`
|
|---|
| 481 | if [ "<${igetStatus}>" != "<>" ]; then
|
|---|
| 482 | $ECHO "FATAL (${scriptName}): error while iget:"
|
|---|
| 483 | $ECHO $igetStatus
|
|---|
| 484 | exit 1
|
|---|
| 485 | fi
|
|---|
| 486 | $RM ${OUT2}
|
|---|
| 487 | fi
|
|---|
| 488 |
|
|---|
| 489 |
|
|---|
| 490 | for ((i=${firstCycleId};i<${lastp1CycleId};i++)); do
|
|---|
| 491 | #
|
|---|
| 492 |
|
|---|
| 493 | ####
|
|---|
| 494 | # Check daq status
|
|---|
| 495 | #JEC 1/10/11 Use generic baodaqstatus name
|
|---|
| 496 | ####
|
|---|
| 497 | #get the daq current irod status
|
|---|
| 498 | #tag=`${DATE} +%F`
|
|---|
| 499 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt
|
|---|
| 500 | OUT1=${publicpath}/baodaqstatus-current.txt
|
|---|
| 501 |
|
|---|
| 502 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then
|
|---|
| 503 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem"
|
|---|
| 504 | exit 1
|
|---|
| 505 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2min..."
|
|---|
| 506 | #JEC 29/9/11 avoid finished stuff
|
|---|
| 507 | # $RM -f ${tmppublicpath}/statusdaq.finished
|
|---|
| 508 | # ${scriptpath}/statusdaq.sh > ${OUT1}
|
|---|
| 509 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
|
|---|
| 510 | # sleep 30
|
|---|
| 511 | # done
|
|---|
| 512 | # $RM ${tmppublicpath}/statusdaq.finished
|
|---|
| 513 | #protect against remove/rewriting
|
|---|
| 514 | # $CHMOD -v 444 ${OUT1}
|
|---|
| 515 | fi
|
|---|
| 516 |
|
|---|
| 517 | #time window selection
|
|---|
| 518 | tmproc="-tmproc ${timeArray[${i}]},${timeDuration}"
|
|---|
| 519 | #cycle <number>
|
|---|
| 520 | cycle="${cycleArray[${i}]}"
|
|---|
| 521 | if [ "<${firstCycle}>" != "<>" -a "<${lastCycle}>" != "<>" ]; then
|
|---|
| 522 | if [ ${cycle} -lt ${firstCycle} -o ${cycle} -gt ${lastCycle} ]; then
|
|---|
| 523 | continue
|
|---|
| 524 | fi
|
|---|
| 525 | fi
|
|---|
| 526 | $ECHO "DEBUG (${scriptName}): process cycle $cycle"
|
|---|
| 527 |
|
|---|
| 528 | #cycle <name><number>
|
|---|
| 529 | cycle="${cyclebasename}${cycleArray[${i}]}"
|
|---|
| 530 | #signal files selection
|
|---|
| 531 | infiles="${filesArray[${i}]}"
|
|---|
| 532 | #
|
|---|
| 533 | #Prepare BQS parameters: MEMORY, CPU...#
|
|---|
| 534 | infilesArray=( `$ECHO $infiles | $AWK 'BEGIN {FS=","} {for(i=1;i<NF;i++)print $i;}'` )
|
|---|
| 535 | IFS='
|
|---|
| 536 | '
|
|---|
| 537 | infilesArray=( $( printf "%s\n" "${infilesArray[@]}" | awk 'x[$0]++ == 0' ) )
|
|---|
| 538 | IFS=$DefaultIFS
|
|---|
| 539 | firstFile=${infilesArray[0]}
|
|---|
| 540 | lastFile=${infilesArray[1]}
|
|---|
| 541 | #
|
|---|
| 542 | #
|
|---|
| 543 | #
|
|---|
| 544 | #get signals files
|
|---|
| 545 | OUT3=./getsignals.$$
|
|---|
| 546 | ${scriptpath}/getsignalfiles.sh ${sourceRadio} ${dateSelected} ${firstFile} ${lastFile} > ${OUT3} 2>&1
|
|---|
| 547 | getSignals=`$GREP "^FATAL" ${OUT3}`
|
|---|
| 548 | if [ "<$getSignals>" != "<>" ]; then
|
|---|
| 549 | $ECHO "FATAL (${scriptName}): error while get signals"
|
|---|
| 550 | $ECHO $getSignals
|
|---|
| 551 | exit 1
|
|---|
| 552 | fi
|
|---|
| 553 | $RM ${OUT3}
|
|---|
| 554 |
|
|---|
| 555 | #location of the signal file
|
|---|
| 556 | fibfile="${curDir} 1,2"
|
|---|
| 557 | #
|
|---|
| 558 | outDir=${curDir}/${dirName}/${cycle}
|
|---|
| 559 | $MKDIR -p ${outDir}
|
|---|
| 560 |
|
|---|
| 561 | #
|
|---|
| 562 | # where ami...
|
|---|
| 563 | #
|
|---|
| 564 | $ECHO "We are here `pwd`"
|
|---|
| 565 | $LS -lrth
|
|---|
| 566 | $FIND . -name "igetStatus.*" | $XARGS -i $CAT {}
|
|---|
| 567 | $LS ./Fiber1 | $WC -l
|
|---|
| 568 | $LS ./Fiber2 | $WC -l
|
|---|
| 569 | $LS -lR ${outDir}
|
|---|
| 570 |
|
|---|
| 571 | #Note: here act=gain means only that specmfib will use median-like algorithms (not only for gains...)
|
|---|
| 572 | $prg -act ${action} $forceSingle $freqfilter -prt $prtlevel -out ${outDir} -nmean $nwinmean $ingain $tmproc -tspwin ${tspwin},0,0 -in $infiles ${fibfile}
|
|---|
| 573 |
|
|---|
| 574 | $ECHO ${outDir}
|
|---|
| 575 | $LS -lrt ${outDir}
|
|---|
| 576 |
|
|---|
| 577 | #save results to Irods (use option -f ONLY to force override)
|
|---|
| 578 | emptydir=`$FIND ${outDir} -maxdepth 1 -type f | $WC -l`
|
|---|
| 579 | if [ "<${emptydir}>" != "<0>" ]; then
|
|---|
| 580 | iput -v -K -r -f ${curDir}/${dirName} /baoradio/data/AmasNancay/${localpath}
|
|---|
| 581 | else
|
|---|
| 582 | $ECHO "DEBUG (${scriptName}): directory ${outDir} is empty"
|
|---|
| 583 | fi
|
|---|
| 584 | #
|
|---|
| 585 | #clean the signal files which can at the end of the day fill completly the scratch directory of the batch work/AmasNancayer
|
|---|
| 586 | $RM -rf ${iojobpath}/${localpath}/Fiber1
|
|---|
| 587 | $RM -rf ${iojobpath}/${localpath}/Fiber2
|
|---|
| 588 | # $RM -rf ${iojobpath}/${localpath}/${typeofproc} JEC 25/10/11
|
|---|
| 589 | $RM -rf ${curDir}/${dirName}
|
|---|
| 590 | #
|
|---|
| 591 | #
|
|---|
| 592 |
|
|---|
| 593 | #end loop on cycles
|
|---|
| 594 | done
|
|---|
| 595 | #
|
|---|
| 596 | $ECHO "DEBUG (${scriptName}): END loop on cycles"
|
|---|
| 597 |
|
|---|
| 598 | exit 0
|
|---|
