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1<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
2<html lang="fr-fr"><head>
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30  <title>ELYSE Software</title><meta content="J-E Campagne " name="author"></head>
31
32<body>
33
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35
36
37
38<h1 style="text-align: center; color: rgb(0, 0, 153);"><a class="mozTocH1" name="mozTocId909942"></a>Install and run ELYSE software&nbsp;</h1>
39
40
41
42
43
44<h1 style="text-align: center; color: rgb(0, 0, 153);">and the associate toolkits</h1>
45
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48
49
50<hr style="width: 100%; height: 2px;">
51<h2 style="color: rgb(51, 102, 255);"><a class="mozTocH2" name="mozTocId102030"></a><span style="color: rgb(51, 51, 255);">Table of Contents</span></h2>
52
53
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55
56
57<ul id="mozToc">
58
59
60
61
62<!--mozToc h2 2 h3 3 h4 4 h5 5 h6 6--><li><a href="#mozTocId102030">Table of Contents</a>
63   
64   
65   
66   
67    <ul>
68
69
70
71
72      <li><a href="#mozTocId791206">What the user have to know?</a></li>
73
74
75
76
77      <li><a href="#mozTocId474404">Installation of the Plug-ins and the ELYSE package&nbsp;</a>
78       
79       
80       
81       
82        <ul>
83
84
85
86
87          <li><a href="#mozTocId129835">The OpenScientist toolkit</a></li>
88
89
90
91
92          <li><a href="#mozTocId109209">The ELYSE package</a></li>
93
94
95
96
97       
98       
99       
100       
101        </ul>
102
103
104
105
106      </li>
107
108
109
110
111      <li><a href="#mozTocId3450">Simple runs</a>
112       
113       
114       
115       
116        <ul>
117
118
119
120
121          <li><a href="#mozTocId327975">Interactive session</a></li>
122
123
124
125
126          <li><a href="#mozTocId967005">Batch mode</a></li>
127
128
129
130
131       
132       
133       
134       
135        </ul>
136
137
138
139
140      </li>
141
142
143
144
145   
146   
147   
148   
149    </ul>
150
151
152
153
154  </li>
155
156
157
158
159</ul>
160
161
162
163
164
165<h2 style="color: rgb(51, 51, 255);"><a class="mozTocH2" name="mozTocId791206"></a>What the user have to know?</h2>
166
167
168
169
170
171The user is supposed to know how to practice more or less: <br>
172
173
174
175
176
177<ul>
178
179
180
181
182
183  <li>the Linux OS or the MacOSX<span style="color: rgb(51, 204, 0);"></span></li>
184
185
186
187
188
189  <li>the <a href="http://www.cmtsite.org/">CMT</a> code management tool,</li>
190
191
192
193
194
195  <li>the <a href="http://svnbook.red-bean.com/en/1.0/index.html">SVN</a> the code version repository management tool (this is an alternative to the more usual CVS tool),</li>
196
197
198
199
200
201  <li>the <a href="http://www.cs.uregina.ca/Dept/manuals/Manuals/7Language/7_18C++/c++.htm">C++</a> language,</li>
202
203
204
205
206
207  <li>the <a href="http://geant4.web.cern.ch/geant4/">Geant 4</a> simulation tool,&nbsp;</li>
208
209
210
211
212
213  <li>the&nbsp;<a href="http://openscientist.lal.in2p3.fr/">OpenScientist</a> toolkit especially have a look at the <a href="http://aida.freehep.org">AIDA</a>
214abstract interface for the tuple creation and, also some practice of
215the OpenScientist visualisation to run the ELYSE_session executable</li>
216
217
218
219
220
221  <li>the <a href="http://root.cern.ch/">ROOT</a> toolkit if one wants to make analysis/ploting using this package.</li>
222
223
224
225
226
227</ul>
228
229
230
231
232
233<h2 style="color: rgb(51, 51, 255);"><a class="mozTocH2" name="mozTocId474404"></a>Installation of the Plug-ins and the ELYSE package&nbsp;</h2>
234
235
236
237
238
239<div style="text-align: justify;">It is supposed that the SVN, CMT (at
240least version v1r18), ROOT (at least version 4) tools are available
241under the plateform used hereafter. For definitiveness it is
242explicitely shown the commands to be executed under the UNIX/csh shell.
243Usually the toolkits are also providing UNIX/sh shell command file. The
244Mac XXX will be documented later. </div>
245
246
247
248
249
250<h3><a class="mozTocH3" name="mozTocId129835"></a>The OpenScientist toolkit</h3>
251
252
253
254
255
256If the user is running under Linux SL3 with the compiler gcc- 3.2.3, the&nbsp;&nbsp;<a href="http://openscientist.lal.in2p3.fr/">OpenScientist</a> v16r0 toolkit binariies may directly downlaoded <a href="http://openscientist.lal.in2p3.fr/download/v16r0/">here</a>. The <a href="http://proj-clhep.web.cern.ch/proj-clhep/">CLHEP</a> 2.0.3.1 and&nbsp;<a href="http://geant4.web.cern.ch/geant4/">Geant 4</a>
2578.2 version are part of the toolkit and includes all the include files,
258the libraries and the binnaries necessary for the development of the
259ELYSE code or similar codes.<br>
260
261
262
263
264
265<br>
266
267
268
269
270
271<a name="OpenScientistInstall"></a>So, the user proceeds as followed (UNIX):<br>
272
273
274
275
276
277<ol>
278
279
280
281
282
283  <li>download the zip file</li>
284
285
286
287
288
289  <li>unzip on a <span style="font-style: italic;">kits</span> area (see the <a href="#CMTIandKits">Kits &amp; CMT hierarchy</a>) that may be different of his/her <span style="font-style: italic;">work</span> area</li>
290
291
292
293
294
295  <li>cd OpenScientist/v16r0</li>
296
297
298
299
300
301  <li>chmod &nbsp;a+x install</li>
302
303
304
305
306
307  <li>./install</li>
308
309
310
311
312
313</ol>
314
315
316
317
318
319To use the toolkit in stand alone mode or to see if the installation
320was fine, first of all setup the environment by sourcing:
321&nbsp;&nbsp;&nbsp; <br>
322
323
324
325
326
327&nbsp;csh&gt; source &lt;path&gt;/OpenScientist/v16r0/aida-setup.csh<br>
328
329
330
331
332
333(&nbsp; sh&gt; . &lt;path&gt;/OpenScientist/v16r0/aida-setup.sh )<br>
334
335
336
337
338
339&nbsp;Then, for instance one may experience the&nbsp; ploting capability :
340<ul>
341
342
343
344
345
346  <li>UNIX&gt;&nbsp; aida-config</li>
347
348
349
350
351
352  <li>UNIX&gt; onxlab</li>
353
354
355
356
357
358</ul>
359
360
361
362
363
364The user may see the famous gaussian distribution and the associate fit....<br>
365
366
367
368
369
370<div style="text-align: center;"><img style="width: 858px; height: 734px;" alt="Image" src="Images/onxlab.jpg">
371
372
373
374
375</div>
376
377
378
379
380
381<br>
382
383
384
385
386
387Also, the user may play with&nbsp;Geant4 interactively and show the
388event display. Have a look at the novice examples or a simpler example
389as followed: <br>
390
391
392
393
394
395<ul>
396
397
398
399
400
401  <li>&nbsp;UNIX&gt; G4Simple_session</li>
402
403
404
405
406
407  <li>In the Geant 4 menu, starts with "Init" and then "Run", some tracks will appear when the number of events are validated</li>
408
409
410
411
412
413  <li>To show the geometry: follow the "Physical Volumes" in the "Tree
414actions" and clik on the different directories and leaves. One may see
415the following figure:</li>
416
417
418
419
420
421</ul>
422
423
424
425
426
427<div style="text-align: center;"><img style="width: 858px; height: 734px;" alt="Image" src="Images/G4Simple.jpg">
428
429
430
431
432</div>
433
434
435
436
437
438<h3><a class="mozTocH3" name="mozTocId109209"></a>The ELYSE package</h3>
439
440
441
442
443
444To install the ELYSE package, one may adopt a directory hierarchy as followed (UNIX):<br>
445
446
447
448
449
450<ul>
451
452
453
454
455
456  <li>define at the&nbsp;login phase the <a name="CMTPROJECTPATH"></a>CMTPROJECTPATH environment variable:&nbsp;</li>
457
458
459
460
461
462</ul>
463
464
465
466
467
468<table style="width: 100%;" border="1" cellpadding="2" cellspacing="2">
469
470
471
472
473
474
475  <tbody>
476
477
478
479
480
481    <tr>
482
483
484
485
486
487      <td style="background-color: rgb(204, 204, 204);">setenv CMTPROJECTPATH "&lt;common-area-path&gt;/kits:&lt;personal-area&gt;"</td>
488
489
490
491
492
493    </tr>
494
495
496
497
498
499
500 
501 
502 
503 
504 
505  </tbody>
506</table>
507
508
509
510
511
512<ul>
513
514
515
516
517
518  <li><a name="CMTIandKits"></a>create if not already done the <span style="color: rgb(255, 0, 0);">&lt;common-area-path&gt;/kits</span> area for the OpenScientist toolkit as described <a href="#OpenScientistInstall">above</a>, but also the ROOT toolkit, CMT tool ...</li>
519
520
521
522
523
524  <li>create the <span style="color: rgb(255, 0, 0);">&lt;common-area-path&gt;/CMTI/ <span style="color: rgb(0, 0, 0);">area</span></span>:&nbsp;
525    <ul>
526
527
528
529
530
531    <li>create a <span style="color: rgb(255, 0, 0);"><a name="cmtproject.cmt-1"></a>/cmt/project.cmt</span> file with the simple ligne</li>
532
533
534
535
536
537 
538 
539 
540 
541 
542    </ul>
543  </li>
544
545
546
547
548
549 
550 
551 
552 
553 
554
555
556
557
558</ul>
559
560
561
562
563
564<table style="background-color: rgb(192, 192, 192); width: 100%;" border="1" cellpadding="2" cellspacing="2">
565
566
567
568
569
570
571  <tbody>
572
573
574
575
576
577    <tr>
578
579
580
581
582
583      <td>project CMTI</td>
584
585
586
587
588
589    </tr>
590
591
592
593
594
595
596 
597 
598 
599 
600 
601  </tbody>
602</table>
603
604
605
606
607
608<ul>
609
610
611
612
613
614 
615 
616 
617 
618 
619  <ul>
620
621
622
623
624
625    <li><a name="to_install_the_OpenScientist-CMT_"></a>to install the OpenScientist-CMT&nbsp; Interfaces for OpenScientist toolkit and the ROOT toolkit</li>
626
627
628
629
630
631 
632 
633 
634 
635 
636  </ul>
637
638
639
640
641
642 
643 
644 
645 
646 
647  <ul>
648
649
650
651
652
653   
654   
655   
656   
657   
658    <ul>
659
660
661
662
663
664      <li>download the Interfaces here (<span style="color: rgb(255, 0, 0); font-weight: bold;">TBD</span>)&nbsp;</li>
665
666
667
668
669
670   
671   
672   
673   
674   
675    </ul>
676
677
678
679
680
681   
682   
683   
684   
685   
686    <ul>
687
688
689
690
691
692      <li>edit the <span style="color: rgb(255, 0, 0);">OpenScientist/v16r0/cmt/requirement</span> file and change the OSC_home macro according to the local implementation as example</li>
693
694
695
696
697
698   
699   
700   
701   
702   
703    </ul>
704
705
706
707
708
709 
710 
711 
712 
713 
714  </ul>
715
716
717
718
719
720</ul>
721
722
723
724
725
726<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
727
728
729
730
731
732  <tbody>
733
734
735
736
737
738    <tr>
739
740
741
742
743
744      <td style="background-color: rgb(192, 192, 192);">#macro OSC_home "/usr/local/OpenScientist/v16r0"<br>
745
746
747
748
749
750macro OSC_home "/home/campagne/kits/OpenScientist/v16r0/"</td>
751
752
753
754
755
756    </tr>
757
758
759
760
761
762 
763 
764 
765 
766 
767  </tbody>
768</table>
769
770
771
772
773
774<ul>
775
776
777
778
779
780 
781 
782 
783 
784 
785  <ul>
786
787
788
789
790
791   
792   
793   
794   
795   
796    <ul>
797
798
799
800
801
802      <li>edit in the same spirit, edit the <span style="color: rgb(255, 0, 0);">ROOT/&lt;version&gt;/cmt/requiement</span> file to change the ROOT_native_version and the ROOT_home macros, as for instance</li>
803
804
805
806
807
808   
809   
810   
811   
812   
813    </ul>
814
815
816
817
818
819 
820 
821 
822 
823 
824  </ul>
825
826
827
828
829
830</ul>
831
832
833
834
835
836<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
837
838
839
840
841
842  <tbody>
843
844
845
846
847
848    <tr>
849
850
851
852
853
854      <td style="background-color: rgb(192, 192, 192);">#macro ROOT_native_version "v5-13-04b"<br>
855
856
857
858
859
860macro ROOT_native_version "4.03.02"<br>
861
862
863
864
865
866      <br>
867
868
869
870
871
872macro ROOT_home "/home/campagne/kits/root-${ROOT_native_version}" </td>
873
874
875
876
877
878    </tr>
879
880
881
882
883
884 
885 
886 
887 
888 
889  </tbody>
890</table>
891
892
893
894
895
896<ul>
897
898
899
900
901
902  <li>create a <span style="color: rgb(255, 0, 0);">&lt;personal-area&gt;/OSArea</span> area :
903    <ul>
904
905
906
907
908
909    <li>create a <a name="cmtproject.cmt-2"></a><span style="color: rgb(255, 0, 0);">/cmt/project.cmt</span> file with the simple code making the bridge between the ELYSE-like package and the common kits used to develop and use them:</li>
910
911
912
913
914
915 
916 
917 
918 
919 
920    </ul>
921  </li>
922
923
924
925
926
927 
928 
929 
930 
931 
932
933
934
935
936</ul>
937
938
939
940
941
942<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
943
944
945
946
947
948  <tbody>
949
950
951
952
953
954    <tr>
955
956
957
958
959
960      <td style="background-color: rgb(192, 192, 192);">project OSArea<br>
961
962
963
964
965
966      <br>
967
968
969
970
971
972use OpenScientist v16r0<br>
973
974
975
976
977
978use CMTI</td>
979
980
981
982
983
984    </tr>
985
986
987
988
989
990 
991 
992 
993 
994 
995  </tbody>
996</table>
997
998
999
1000
1001
1002<ul>
1003
1004
1005
1006
1007
1008 
1009 
1010 
1011 
1012 
1013  <ul>
1014
1015
1016
1017
1018
1019    <li>download the ELYSE package using&nbsp;
1020      <ul>
1021
1022
1023
1024
1025
1026      <li>either a tarball at the following link: <span style="font-weight: bold; color: rgb(255, 0, 0);">TBD if possible</span></li>
1027
1028
1029
1030
1031
1032      <li>either the SVN software:
1033          <ul>
1034
1035
1036
1037
1038
1039        <li>define the environment variable:</li>
1040
1041
1042
1043
1044
1045     
1046     
1047     
1048     
1049     
1050          </ul>
1051        </li>
1052
1053
1054
1055
1056
1057     
1058     
1059     
1060     
1061     
1062
1063
1064
1065
1066   
1067   
1068   
1069   
1070   
1071      </ul>
1072    </li>
1073
1074
1075
1076
1077
1078   
1079   
1080   
1081   
1082   
1083
1084
1085
1086
1087 
1088 
1089 
1090 
1091 
1092  </ul>
1093
1094
1095
1096
1097
1098</ul>
1099
1100
1101
1102
1103
1104<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1105
1106
1107
1108
1109
1110  <tbody>
1111
1112
1113
1114
1115
1116    <tr>
1117
1118
1119
1120
1121
1122      <td style="background-color: rgb(192, 192, 192);">setenv SVNURL "https://svn.lal.in2p3.fr/Opera/Glob"</td>
1123
1124
1125
1126
1127
1128    </tr>
1129
1130
1131
1132
1133
1134 
1135 
1136 
1137 
1138 
1139  </tbody>
1140</table>
1141
1142
1143
1144
1145
1146<ul>
1147
1148
1149
1150
1151
1152 
1153 
1154 
1155 
1156 
1157  <ul>
1158
1159
1160
1161
1162
1163   
1164   
1165   
1166   
1167   
1168    <ul>
1169
1170
1171
1172
1173
1174     
1175     
1176     
1177     
1178     
1179      <ul>
1180
1181
1182
1183
1184
1185        <li>&nbsp;Check Out the HEAD version of the ELYSE package if
1186you want to be a developer (ie. make later some "svn commit"
1187order):&nbsp;</li>
1188
1189
1190
1191
1192
1193     
1194     
1195     
1196     
1197     
1198      </ul>
1199
1200
1201
1202
1203
1204   
1205   
1206   
1207   
1208   
1209    </ul>
1210
1211
1212
1213
1214
1215 
1216 
1217 
1218 
1219 
1220  </ul>
1221
1222
1223
1224
1225
1226</ul>
1227
1228
1229
1230
1231
1232<table style="width: 100%;" border="1" cellpadding="2" cellspacing="2">
1233
1234
1235
1236
1237
1238
1239  <tbody>
1240
1241
1242
1243
1244
1245    <tr>
1246
1247
1248
1249
1250
1251      <td style="background-color: rgb(204, 204, 204);">svn co ${SVNURL}/ELYSE/HEAD ELYSE/&lt;new-version&gt;</td>
1252
1253
1254
1255
1256
1257    </tr>
1258
1259
1260
1261
1262
1263
1264 
1265 
1266 
1267 
1268 
1269  </tbody>
1270</table>
1271
1272
1273
1274
1275
1276<br>
1277
1278
1279
1280
1281
1282<div style="text-align: justify;">Look at the repository SVNURL with
1283your Web browser and see in the ELYSE/tags directory the latest
1284tagged version to choose the new-version tag. In general new-version is
1285composed with a &lt;major&gt; and a &lt;minor&gt; number (eg.
1286v&lt;major&gt;r&lt;minor&gt;) and the usage is that &lt;major&gt;
1287indicates non backward compatibility (notice that it might be that
1288&lt;minor&gt; release are non backward compatible).
1289
1290
1291
1292
1293</div>
1294
1295
1296
1297
1298
1299<ul>
1300
1301
1302
1303
1304
1305 
1306 
1307 
1308 
1309 
1310  <ul>
1311
1312
1313
1314
1315
1316   
1317   
1318   
1319   
1320   
1321    <ul>
1322
1323
1324
1325
1326
1327     
1328     
1329     
1330     
1331     
1332      <ul>
1333
1334
1335
1336
1337
1338        <li>execute the CMT setup:</li>
1339
1340
1341
1342
1343
1344     
1345     
1346     
1347     
1348     
1349      </ul>
1350
1351
1352
1353
1354
1355   
1356   
1357   
1358   
1359   
1360    </ul>
1361
1362
1363
1364
1365
1366 
1367 
1368 
1369 
1370 
1371  </ul>
1372
1373
1374
1375
1376
1377</ul>
1378
1379
1380
1381
1382
1383<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1384
1385
1386
1387
1388
1389  <tbody>
1390
1391
1392
1393
1394
1395    <tr>
1396
1397
1398
1399
1400
1401      <td style="background-color: rgb(204, 204, 204);">source &lt;common-area-path&gt;/kits/CMT/&lt;version&gt;/mgr/setup.csh</td>
1402
1403
1404
1405
1406
1407    </tr>
1408
1409
1410
1411
1412
1413 
1414 
1415 
1416 
1417 
1418  </tbody>
1419</table>
1420
1421
1422
1423
1424
1425<ul>
1426
1427
1428
1429
1430
1431 
1432 
1433 
1434 
1435 
1436  <ul>
1437
1438
1439
1440
1441
1442   
1443   
1444   
1445   
1446   
1447    <ul>
1448
1449
1450
1451
1452
1453     
1454     
1455     
1456     
1457     
1458      <ul>
1459
1460
1461
1462
1463
1464        <li>&nbsp;Then, one needs to reconfigure the ELYSE environment using the CMT ad hoc command</li>
1465
1466
1467
1468
1469
1470     
1471     
1472     
1473     
1474     
1475      </ul>
1476
1477
1478
1479
1480
1481   
1482   
1483   
1484   
1485   
1486    </ul>
1487
1488
1489
1490
1491
1492 
1493 
1494 
1495 
1496 
1497  </ul>
1498
1499
1500
1501
1502
1503</ul>
1504
1505
1506
1507
1508
1509<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1510
1511
1512
1513
1514
1515  <tbody>
1516
1517
1518
1519
1520
1521    <tr>
1522
1523
1524
1525
1526
1527      <td style="background-color: rgb(204, 204, 204);">UNIX&gt; cd ELYSE/&lt;version&gt;/cmt<br>
1528
1529
1530
1531
1532
1533UNIX&gt; cmt config<br>
1534
1535
1536
1537
1538
1539UNIX&gt; source setup.csh</td>
1540
1541
1542
1543
1544
1545    </tr>
1546
1547
1548
1549
1550
1551 
1552 
1553 
1554 
1555 
1556  </tbody>
1557</table>
1558
1559
1560
1561
1562
1563<br>
1564
1565
1566
1567
1568
1569At this stage one may wander if the environment is correct and if CMT
1570will find all the packages to proceed to a successful compilation and
1571linkage. One can use the following cross-checks:<br>
1572
1573
1574
1575
1576
1577<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1578
1579
1580
1581
1582
1583  <tbody>
1584
1585
1586
1587
1588
1589    <tr>
1590
1591
1592
1593
1594
1595      <td style="background-color: rgb(204, 204, 204);">UNIX&gt; cd ELYSE/&lt;version&gt;/cmt&gt;<br>
1596
1597
1598
1599
1600
1601UNIX&gt; cmt show path<br>
1602
1603
1604
1605
1606
1607# Add path /home/campagne/projets/OSArea from initialization<br>
1608
1609
1610
1611
1612
1613# Add path /home/campagne/kits/OpenScientist/v16r0 from ProjectPath<br>
1614
1615
1616
1617
1618
1619# Add path /home/campagne/CMTI from ProjectPath<br>
1620
1621
1622
1623
1624
1625# Add path /home/campagne/CMTI from ProjectPath</td>
1626
1627
1628
1629
1630
1631    </tr>
1632
1633
1634
1635
1636
1637 
1638 
1639 
1640 
1641 
1642  </tbody>
1643</table>
1644
1645
1646
1647
1648
1649Here it is shown that the <a href="#CMTPROJECTPATH">CMTPROJECTPATH</a> is well defined and that the different <a href="#cmtproject.cmt-1">project.cmt files</a> are correctly configurated. Then uses,<br>
1650
1651
1652
1653
1654
1655<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1656
1657
1658
1659
1660
1661  <tbody>
1662
1663
1664
1665
1666
1667    <tr>
1668
1669
1670
1671
1672
1673      <td style="background-color: rgb(204, 204, 204);">UNIX&gt; cmt show uses<br>
1674
1675
1676
1677
1678
1679# use OpenScientist v16r0 Interfaces<br>
1680
1681
1682
1683
1684
1685# use ROOT v1r* Interfaces (native_version=4.03.02)<br>
1686
1687
1688
1689
1690
1691#<br>
1692
1693
1694
1695
1696
1697# Selection :<br>
1698
1699
1700
1701
1702
1703use CMT v1r18p20051108 (/home/campagne/kits)<br>
1704
1705
1706
1707
1708
1709use ROOT v1r51000p0 Interfaces (/home/campagne/CMTI/)<br>
1710
1711
1712
1713
1714
1715use OpenScientist v16r0 Interfaces (/home/campagne/CMTI/)</td>
1716
1717
1718
1719
1720
1721    </tr>
1722
1723
1724
1725
1726
1727 
1728 
1729 
1730 
1731 
1732  </tbody>
1733</table>
1734
1735
1736
1737
1738
1739to see if the<a href="#to_install_the_OpenScientist-CMT_"> OpenScientist and ROOT Interface packages</a> are found (this does not mean yet that the Interfaces are correctly tuned...)<br>
1740
1741
1742
1743
1744
1745<ul>
1746
1747
1748
1749
1750
1751 
1752 
1753 
1754 
1755 
1756  <ul>
1757
1758
1759
1760
1761
1762   
1763   
1764   
1765   
1766   
1767    <ul>
1768
1769
1770
1771
1772
1773     
1774     
1775     
1776     
1777     
1778      <ul>
1779
1780
1781
1782
1783
1784        <li>If the above cross-checks are successfuly passed, then one can proceed to the compilation and the link: &nbsp;</li>
1785
1786
1787
1788
1789
1790     
1791     
1792     
1793     
1794     
1795      </ul>
1796
1797
1798
1799
1800
1801   
1802   
1803   
1804   
1805   
1806    </ul>
1807
1808
1809
1810
1811
1812 
1813 
1814 
1815 
1816 
1817  </ul>
1818
1819
1820
1821
1822
1823</ul>
1824
1825
1826
1827
1828
1829<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1830
1831
1832
1833
1834
1835  <tbody>
1836
1837
1838
1839
1840
1841    <tr>
1842
1843
1844
1845
1846
1847      <td style="background-color: rgb(204, 204, 204);">UNIX&gt; cd ELYSE/&lt;verson&gt;/cmt<br>
1848
1849
1850
1851
1852
1853UNIX&gt; gmake</td>
1854
1855
1856
1857
1858
1859    </tr>
1860
1861
1862
1863
1864
1865 
1866 
1867 
1868 
1869 
1870  </tbody>
1871</table>
1872
1873
1874
1875
1876
1877<br>
1878
1879
1880
1881
1882
1883If the all the process of compilationand link is ok, then one should see the following lines:<br>
1884
1885
1886
1887
1888
1889<br>
1890
1891
1892
1893
1894
1895<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1896
1897
1898
1899
1900
1901  <tbody>
1902
1903
1904
1905
1906
1907    <tr>
1908
1909
1910
1911
1912
1913      <td style="background-color: rgb(204, 204, 204);">[...]<br>
1914
1915
1916
1917
1918
1919------&gt; ELYSE_session ok<br>
1920
1921
1922
1923
1924
1925------&gt; (constituents.make) ELYSE_session done<br>
1926
1927
1928
1929
1930
1931&nbsp;all ok.</td>
1932
1933
1934
1935
1936
1937    </tr>
1938
1939
1940
1941
1942
1943 
1944 
1945 
1946 
1947 
1948  </tbody>
1949</table>
1950
1951
1952
1953
1954
1955<br>
1956
1957
1958
1959
1960
1961At the stage, one has build sucessfully ELYSE_session (the
1962interactive version mostly for visualisation) and the ELYSE_batch
1963(the batch version mostly for tuple production on large statistics).<br>
1964
1965
1966
1967
1968
1969<h2 style="color: rgb(51, 51, 255);"><a class="mozTocH2" name="mozTocId3450"></a>Simple runs</h2>
1970
1971
1972
1973
1974
1975Usually the user starts an UNIX session and want to run ELYSE. The two things to do are:<br>
1976
1977
1978
1979
1980
1981<br>
1982
1983
1984
1985
1986
1987<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
1988
1989
1990
1991
1992
1993  <tbody>
1994
1995
1996
1997
1998
1999    <tr>
2000
2001
2002
2003
2004
2005      <td style="background-color: rgb(204, 204, 204);">1) be sure to define the <a href="#CMTPROJECTPATH">CMTPROJECTPATH</a> variable (at login or by sourcing a meta-setup)<br>
2006
2007
2008
2009
2010
20112) execute the ELYSE setup (no more necessary to run "cmt config"):<br>
2012
2013
2014
2015
2016
2017UNIX&gt; cd &lt;personal-area&gt;/OSArea/ELYSE/&lt;versioin&gt;/cmt<br>
2018
2019
2020
2021
2022
2023UNIX&gt; source setup.csh</td>
2024
2025
2026
2027
2028
2029    </tr>
2030
2031
2032
2033
2034
2035 
2036 
2037 
2038 
2039 
2040  </tbody>
2041</table>
2042
2043
2044
2045
2046
2047<br>
2048
2049
2050
2051
2052
2053The directory hierarchy of the ELYSE package is the following:<br>
2054
2055
2056
2057
2058
2059<br>
2060
2061
2062
2063
2064
2065<table style="text-align: left; background-color: rgb(255, 255, 102); width: 100%;" border="1" cellpadding="2" cellspacing="2">
2066
2067
2068
2069
2070
2071  <tbody>
2072
2073
2074
2075
2076
2077    <tr>
2078
2079
2080
2081
2082
2083      <td>source</td>
2084
2085
2086
2087
2088
2089      <td>source Core directory</td>
2090
2091
2092
2093
2094
2095    </tr>
2096
2097
2098
2099
2100
2101    <tr>
2102
2103
2104
2105
2106
2107      <td>application</td>
2108
2109
2110
2111
2112
2113      <td>source files where the <span style="font-style: italic;">main</span> steering routine is defined</td>
2114
2115
2116
2117
2118
2119    </tr>
2120
2121
2122
2123
2124
2125    <tr>
2126
2127
2128
2129
2130
2131      <td>ELYSE</td>
2132
2133
2134
2135
2136
2137      <td>include files of the Core</td>
2138
2139
2140
2141
2142
2143    </tr>
2144
2145
2146
2147
2148
2149    <tr>
2150
2151
2152
2153
2154
2155      <td>cmt</td>
2156
2157
2158
2159
2160
2161      <td>directory where the CMT management files are located (requirements, setup/cleanup)</td>
2162
2163
2164
2165
2166
2167    </tr>
2168
2169
2170
2171
2172
2173    <tr>
2174
2175
2176
2177
2178
2179      <td>data</td>
2180
2181
2182
2183
2184
2185      <td>event file directory. NUANCE style is used to code the primary vertex particles</td>
2186
2187
2188
2189
2190
2191    </tr>
2192
2193
2194
2195
2196
2197    <tr>
2198
2199
2200
2201
2202
2203      <td>run</td>
2204
2205
2206
2207
2208
2209      <td>executable are run from this directory, the inputEventfile
2210symbolic link to an existing event file should be set before run. There
2211are also a collection of ROOT macros to decode the output event
2212sturcture stored into the tuple.</td>
2213
2214
2215
2216
2217
2218    </tr>
2219
2220
2221
2222
2223
2224    <tr>
2225
2226
2227
2228
2229
2230      <td>scripts</td>
2231
2232
2233
2234
2235
2236      <td>Geant4 and OpenScientist scripts</td>
2237
2238
2239
2240
2241
2242    </tr>
2243
2244
2245
2246
2247
2248 
2249 
2250 
2251 
2252 
2253  </tbody>
2254</table>
2255
2256
2257
2258
2259
2260<br>
2261
2262
2263
2264
2265
2266<h3><a class="mozTocH3" name="mozTocId327975"></a>Interactive session</h3>
2267
2268
2269
2270
2271
2272In an interactive session the tuple generation is desable and one starts as followed:<br>
2273
2274
2275
2276
2277
2278<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
2279
2280
2281
2282
2283
2284  <tbody>
2285
2286
2287
2288
2289
2290    <tr>
2291
2292
2293
2294
2295
2296      <td style="background-color: rgb(192, 192, 192);">UNIX&gt; cd $ELYSEROOT/run<br>
2297
2298
2299
2300
2301
2302UNIX&gt; ../$CMTCONFIG/ELYSE_session.exe</td>
2303
2304
2305
2306
2307
2308    </tr>
2309
2310
2311
2312
2313
2314 
2315 
2316 
2317 
2318 
2319  </tbody>
2320</table>
2321
2322
2323
2324
2325
2326&nbsp;<br>
2327
2328
2329
2330
2331
2332After more or less 15'' the geometry is loaded, and 15'' more is needed to see the OnX screen session. Then in the <span style="font-style: italic;">Geant </span>menu, one should validate the number of event to process via the <span style="font-style: italic;">Run</span>
2333sub-menu. The first event is processed and the track of the optical
2334volume are dispayed. By clicking on the eye then it is possible to
2335rotate the event, zoom and so on. One may see the following screen:<br>
2336
2337
2338
2339
2340
2341<img style="width: 858px; height: 734px;" alt="image" src="Images/numuEvent.jpg"> <br>
2342
2343
2344<br>
2345
2346
2347One can visualize the "Hits" using the ELYSE menu, although it is
2348then useful to use the zoom by using CTRL-Shift + drag the mouse in the
2349("Hand mode" see right icons).<br>
2350
2351
2352<br>
2353
2354
2355<img style="width: 858px; height: 734px;" alt="Image" src="Images/numuEventHit.jpg"><br>
2356
2357
2358
2359
2360
2361<br>
2362
2363
2364
2365
2366
2367Using "Arrow Mode" (right icons) the user enter in picking mode to get
2368some ascii information on the object (or collection of objects selected
2369by CTRL-Shift + drag mouse).<br>
2370
2371
2372
2373
2374
2375<h3><a class="mozTocH3" name="mozTocId967005"></a>Batch mode</h3>
2376
2377
2378
2379
2380
2381In the batch mode, the user produces an event tuple (<span style="font-style: italic; color: rgb(255, 0, 0);">run/ELYSE.root</span>)
2382created via the AIDA abstract interfaces implementation by
2383OpenScientist. The I/O is performed in ROOT-I/O repackaged format that
2384can be analysed<br>
2385
2386
2387
2388
2389
2390<ul>
2391
2392
2393
2394
2395
2396  <li>&nbsp;either using &nbsp;compilated AIDA code (<span style="font-style: italic; color: rgb(255, 0, 0);">ELYSE_analysis_aida_ROOT.exe</span>, <span style="font-style: italic; color: rgb(255, 0, 0);">ELYSE_analysis_ROOT.exe</span>) generated by compiling as:&nbsp;</li>
2397
2398
2399
2400
2401
2402</ul>
2403
2404
2405
2406
2407
2408<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
2409
2410
2411
2412
2413
2414  <tbody>
2415
2416
2417
2418
2419
2420    <tr>
2421
2422
2423
2424
2425
2426      <td style="background-color: rgb(204, 204, 204);">UNIX&gt; you are in the <span style="font-style: italic;">run</span> directory<br>
2427
2428
2429
2430
2431
2432UNIX&gt; (cd ../cmt ; gmake ROOT)</td>
2433
2434
2435
2436
2437
2438    </tr>
2439
2440
2441
2442
2443
2444 
2445 
2446 
2447 
2448 
2449  </tbody>
2450</table>
2451
2452
2453
2454
2455
2456&nbsp;&nbsp; <br>
2457
2458
2459
2460
2461
2462&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;&nbsp; The difference between the two applications are XXX &nbsp;&nbsp;&nbsp; <br>
2463
2464
2465
2466
2467
2468<ul>
2469
2470
2471
2472
2473
2474  <li>either using interactive OnX session ()</li>
2475
2476
2477
2478
2479
2480</ul>
2481
2482
2483
2484
2485
2486<ul>
2487
2488
2489
2490
2491
2492  <li>or&nbsp;using the ROOT toolkit using the <span style="font-style: italic; color: rgb(255, 0, 0);">ELYSE_xxx.C</span> macros</li>
2493
2494
2495
2496
2497
2498</ul>
2499
2500
2501
2502
2503
2504The structure of the tuple for the moment is the following:<br>
2505
2506
2507
2508
2509
2510<table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2">
2511
2512
2513
2514
2515
2516  <tbody>
2517
2518
2519
2520
2521
2522    <tr>
2523
2524
2525
2526
2527
2528      <td style="background-color: rgb(102, 255, 153);">&nbsp; std::string column = "int eventId, inputEvtId, interMode, vtxVol, "; <br>
2529
2530
2531
2532
2533
2534&nbsp; column += "ITuple vtxPos = { double x, y, z }, ";<br>
2535
2536
2537
2538
2539
2540&nbsp; column += "int nPart, leptonIndex, protonIndex, ";<br>
2541
2542
2543
2544
2545
2546&nbsp; column += "ITuple track = { int pId, parent, float timeStart, ";<br>
2547
2548
2549
2550
2551
2552&nbsp; column
2553+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2554"ITuple direction = { double dx, dy, dz }, ";<br>
2555
2556
2557
2558
2559
2560&nbsp; column
2561+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2562"double mass, pTot, ETot, ";<br>
2563
2564
2565
2566
2567
2568&nbsp; column
2569+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2570"ITuple momentum&nbsp; = { double px, py, pz }, ";<br>
2571
2572
2573
2574
2575
2576&nbsp; column
2577+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2578"ITuple startPos&nbsp; = { double&nbsp; x,&nbsp; y,&nbsp; z }, ";<br>
2579
2580
2581
2582
2583
2584&nbsp; column
2585+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2586"ITuple stopPos&nbsp;&nbsp; = { double&nbsp; x,&nbsp; y,&nbsp; z }, ";<br>
2587
2588
2589
2590
2591
2592&nbsp; column
2593+=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
2594"int startVol, stopVol ";<br>
2595
2596
2597
2598
2599
2600&nbsp; column +=&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; "}, ";<br>
2601
2602
2603
2604
2605
2606&nbsp; column += "int nHits, ITuple hit = { int tubeId, int totalPE, ITuple pe = { float time} }, ";<br>
2607
2608
2609
2610
2611
2612&nbsp; column += "int nDigits, double sumPE, ";<br>
2613
2614
2615
2616
2617
2618&nbsp; column += "ITuple digit = { int tubeId, double pe, time }";</td>
2619
2620
2621
2622
2623
2624    </tr>
2625
2626
2627
2628
2629
2630 
2631 
2632 
2633 
2634 
2635  </tbody>
2636</table>
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653</body></html>
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