echo ".... execute ON"
exec analdata 20110416abell85 151300 On datacycle 1
echo ".... execute OFF"
exec analdata 20110416abell85 151300 Off datacycle 1

echo ".... execute Merging"

c++compile offset


#
#follow cycle to cycle variation of calibration coeff
#
vecfrascii calibOnCh0   20110416abell85-On-1346MHz-Ch0Cycles.txt
vecfrascii calibOnCh1   20110416abell85-On-1346MHz-Ch1Cycles.txt
vecfrascii calibOffCh0  20110416abell85-Off-1346MHz-Ch0Cycles.txt
vecfrascii calibOffCh1  20110416abell85-Off-1346MHz-Ch1Cycles.txt

del diff0
del diff1

set ncount 0
set first 1

for ic ${firstcycle}:${ncycles}
  echo "...... cycle $ic"
  ncount = $ncount + 1
  k = ${ic} -1
  del diffcycle${ic}v0 diffcycle${ic}v1
  if ( $first == 1 ) then
     set first 0
     c++exec \
        TVector<r_4> sigcalOnv0(sumc${ic}mOnv0,false); sigcalOnv0/=calibOnCh0[$k]; \
        TVector<r_4> sigcalOnv1(sumc${ic}mOnv1,false); sigcalOnv1/=calibOnCh1[$k]; \
        TVector<r_4> sigcalOffv0(sumc${ic}mOffv0,false); sigcalOffv0/=calibOffCh0[$k]; \
        TVector<r_4> sigcalOffv1(sumc${ic}mOffv1,false); sigcalOffv1/=calibOffCh1[$k]; \
        TVector<r_4> diffcycle${ic}v0 = sigcalOnv0-sigcalOffv0; \
        TVector<r_4> diffcycle${ic}v1 = sigcalOnv1-sigcalOffv1; \
	TVector<r_4> diff0(diffcycle${ic}v0,false); \
	TVector<r_4> diff1(diffcycle${ic}v1,false); \
        KeepObj(diff0);KeepObj(diff1); \
	KeepObj(diffcycle${ic}v0); KeepObj(diffcycle${ic}v1);
  else
     c++exec \
        TVector<r_4> sigcalOnv0(sumc${ic}mOnv0,false); sigcalOnv0/=calibOnCh0[$k]; \
        TVector<r_4> sigcalOnv1(sumc${ic}mOnv1,false); sigcalOnv1/=calibOnCh1[$k]; \
        TVector<r_4> sigcalOffv0(sumc${ic}mOffv0,false); sigcalOffv0/=calibOffCh0[$k]; \
        TVector<r_4> sigcalOffv1(sumc${ic}mOffv1,false); sigcalOffv1/=calibOffCh1[$k]; \
        TVector<r_4> diffcycle${ic}v0 = sigcalOnv0-sigcalOffv0; \
        TVector<r_4> diffcycle${ic}v1 = sigcalOnv1-sigcalOffv1; \
	diff0+=diffcycle${ic}v0; \
	diff1+=diffcycle${ic}v1; \
	KeepObj(diffcycle${ic}v0); KeepObj(diffcycle${ic}v1);
  endif
end


newvec nmean 1 $ncount nodisp
#coef RT @ 1346MHz Ouest - Est associees a Ch 0 et 1
set xcal ( 27.724 22.543 )
line2vec calib $xcal
del difftot
c++exec diff0/=nmean[0]; diff1/=nmean[0]; \
        diff0*=calib[0];diff1*=calib[1]; \
        TVector<r_4> difftot(diff0,false);difftot+=diff1;difftot/=2.; \
        KeepObj(difftot);


#
#Calibrate and Offset Correction
#
for ic ${firstcycle}:${ncycles}
  c++exec diffcycle${ic}v0*=calib[0];diffcycle${ic}v1*=calib[1]; 
end

del modiff0 moddiff1
set first 1
for ic ${firstcycle}:${ncycles}
  echo "modif ...... cycle $ic"
  
  del inarr outarr  modiffc${ic}v0
  cp  diffcycle${ic}v0 inarr
  c++link offset.so meanoffset
  call meanoffset 1285 1335 1355 1450
  cp outarr modiffc${ic}v0

  del inarr outarr modiffc${ic}v1
  cp  diffcycle${ic}v1 inarr
  c++link offset.so meanoffset
  call meanoffset 1285 1335 1355 1450
  cp outarr modiffc${ic}v1

  if ( $first == 1 ) then
     set first 0
     c++exec \ 
       TVector<r_4> modiff0(modiffc${ic}v0,false); \ 
       TVector<r_4> modiff1(modiffc${ic}v1,false); \ 
       KeepObj(modiff0);KeepObj(modiff1);
  else
     c++exec modiff0+=modiffc${ic}v0;  modiff1+=modiffc${ic}v1;
  endif
end  


newwin 1 1
setaxesatt $defatt
graphicatt "$defatt xylimits=1250,1500,-1.,1."
set first 1
for ic ${firstcycle}:${ncycles}
  echo "...... cycle $ic"
  k = ${ic}-floor(${ic}/${#cols})*${#cols}
  if ( $first == 1 ) then
     set first 0
     plot2d  diffcycle${ic}v0 (n/8192)*250+1250 val n>0 "$cols[k] cpts nsta notit"
  else
     plot2d  diffcycle${ic}v0 (n/8192)*250+1250 val n>0 "same $cols[k] cpts nsta notit"
  endif
end
settitle "Diff. On-Off No Corr. $source Ch 0 cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "I (Jy)"


newwin 1 1
setaxesatt $defatt
graphicatt "$defatt xylimits=1250,1500,-1.,1."
set first 1
for ic ${firstcycle}:${ncycles}
  echo "...... cycle $ic"
  k = ${ic}-floor(${ic}/${#cols})*${#cols}
  if ( $first == 1 ) then
     set first 0
     plot2d  diffcycle${ic}v1 (n/8192)*250+1250 val n>0 "$cols[k] cpts nsta notit"
  else
     plot2d  diffcycle${ic}v1 (n/8192)*250+1250 val n>0 "same $cols[k] cpts nsta notit"
  endif
end
settitle "Diff. On-Off No Corr. $source Ch 1 cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "I (Jy)"


newwin 1 1
setaxesatt $defatt
graphicatt "$defatt xylimits=1250,1500,-50.,50."
plot2d diff0  (n/8192)*250+1250 val*1000 n>0 "blue cpts nsta notit"
plot2d diff1  (n/8192)*250+1250 val*1000 n>0 "red same cpts nsta notit"
plot2d difftot  (n/8192)*250+1250 val*1000 n>0 "black same cpts nsta notit"
settitle "Mean diff calib No Corr. per cycle ON-OFF Int.  $source cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "Int. (mJy)"

newwin 1 1
graphicatt "$defatt"
n/plot difftot.val*1000 n>1090&&n<4000 ! ! "black  notit"
n/plot diff0.val*1000 n>1090&&n<4000 ! ! "blue same notit"
n/plot diff1.val*1000 n>1090&&n<4000 ! ! "red same notit"
settitle "Diff ON-OFF No Corr. $source [$firstcycle,$lastcycle] 1280MHz - 1370MHz"
setaxelabels "mJy" " "



newwin 1 1
setaxesatt $defatt
graphicatt "$defatt xylimits=1250,1500,-1.,1."
set first 1
for ic ${firstcycle}:${ncycles}
  echo "...... cycle $ic"
  k = ${ic}-floor(${ic}/${#cols})*${#cols}
  if ( $first == 1 ) then
     set first 0
     plot2d  modiffc${ic}v0 (n/8192)*250+1250 val n>0 "$cols[k] cpts nsta notit"
  else
     plot2d  modiffc${ic}v0 (n/8192)*250+1250 val n>0 "same $cols[k] cpts nsta notit"
  endif
end
settitle "Diff. On-Off With Corr. $source Ch 0 cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "I (Jy)"

newwin 1 1
setaxesatt $defatt
graphicatt "$defatt xylimits=1250,1500,-1.,1."
set first 1
for ic ${firstcycle}:${ncycles}
  echo "...... cycle $ic"
  k = ${ic}-floor(${ic}/${#cols})*${#cols}
  if ( $first == 1 ) then
     set first 0
     plot2d  modiffc${ic}v1 (n/8192)*250+1250 val n>0 "$cols[k] cpts nsta notit"
  else
     plot2d  modiffc${ic}v1 (n/8192)*250+1250 val n>0 "same $cols[k] cpts nsta notit"
  endif
end
settitle "Diff. On-Off With Corr. $source Ch 1 cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "I (Jy)"




  
del modifftot
c++exec modiff0/=nmean[0]; modiff1/=nmean[0]; \
        TVector<r_4> modifftot(modiff0,false);modifftot+=modiff1;modifftot/=2.; \
        KeepObj(modifftot);

newwin 1 1
setaxesatt $defatt"
graphicatt "$defatt xylimits=1250,1500,-50.,50."
plot2d modiff0  (n/8192)*250+1250 val*1000 n>0 "blue cpts nsta notit"
plot2d modiff1  (n/8192)*250+1250 val*1000 n>0 "red same cpts nsta notit"
plot2d modifftot  (n/8192)*250+1250 val*1000 n>0 "black same cpts nsta notit"
settitle "Mean diff ON-OFF With Corr.  $source cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "Int. (mJy)"

newwin 1 1
graphicatt "$defatt"
n/plot modifftot.val*1000 n>1090&&n<4000 ! ! "black  notit"
n/plot modiff0.val*1000 n>1090&&n<4000 ! ! "blue same notit"
n/plot modiff1.val*1000 n>1090&&n<4000 ! ! "red same notit"
settitle "Diff ON-OFF With Corr. $source [$firstcycle,$lastcycle] 1280MHz - 1370MHz"
setaxelabels "mJy" " "


newwin 1 1
setaxesatt $defatt"
graphicatt "$defatt xylimits=1250,1500,-50.,50."
plot2d difftot  (n/8192)*250+1250 val*1000 n>0 "blue  cpts nsta notit"
plot2d modifftot  (n/8192)*250+1250 val*1000 n>0 "red same  cpts nsta notit"
settitle "Mean diff ON-OFF NO Corr (blue) With Corr (red)  $source cycles [$firstcycle,$lastcycle]"
setaxelabels "Freq. (MHz)" "Int. (mJy)"