source: MML/trunk/at/simulator/element/mhdrload_bis.m @ 4

Last change on this file since 4 was 4, checked in by zhangj, 10 years ago

Initial import--MML version from SOLEIL@2013

File size: 5.9 KB
Line 
1function [header_mat, data_mat] = mhdrload_bis(file)
2%MHDRLOAD Load data from an ASCII file containing multiple text
3% headers throughout the file.
4% [header, data] = MHDRLOAD('filename.ext') reads a data file
5% called 'filename.ext', which contains a text header.  There
6% is no default extension; any extensions must be explicitly
7% supplied.
8%
9% The first output, HEADER, is the header information, returned
10% as a text array.
11% The second output, DATA, is the data matrix.  This data matrix
12% has the same dimensions as the data in the file, one row per
13% line of ASCII data in the file.  If the data is not regularly
14% spaced (i.e., each line of ASCII data does not contain the
15% same number of points), the data is returned as a column
16% vector.
17%
18% Limitations:  No lines of the text header can begin with
19% a number.  The header must come before the data.
20%
21% MODIFIED from hdrload.m: Dec 20, 2002  Jeff Daniels, NSWCCD - ARD
22%
23% See also LOAD, SAVE, SPCONVERT, FSCANF, FPRINTF, STR2MAT, HDRLOAD.
24% See also the IOFUN directory.
25%
26% EXAMPLE:
27%   If example_data.txt is:
28%   Recorded Data: 12/15/2001
29%   header 1
30%   rows = 2 cols = 2
31%   12 23
32%   34 21
33%   header 2
34%   rows = 3 cols = 3
35%   19 73 13
36%   33 32 47
37%   34 12 68
38
39%   MHDRLOAD returns:
40%     header(:,:,1) =
41%   
42%     Recorded Data: 12/15/2001
43%     header 1               
44%     rows = 2 cols = 2       
45%   
46%     header(:,:,2) =
47%   
48%     header 2               
49%     rows = 3 cols = 3 
50%
51%     data(:,:,1) =
52%   
53%        12    23     0
54%        34    21     0
55%         0     0     0
56%
57%     data(:,:,2) =
58%   
59%        19    73    13
60%        33    32    47
61%        34    12    68
62
63% check number and type of arguments
64if nargin < 1
65    error('Function requires one input argument');
66elseif ~ischar(file)
67    error('Input argument must be a string representing a filename');
68end
69
70% Open the file.  If this returns a -1, we did not open the file
71% successfully.
72fid = fopen(file);
73if fid==-1
74    error('File not found or permission denied.');
75end
76
77% Initialize loop variables
78% We store the number of lines in the header, and the maximum length
79% of any one line in the header.  These are used later in assigning
80% the 'header' output variable.
81no_lines = 0;
82max_line = 0;
83
84% We also store the number of columns in the data we read.  This way
85% we can compute the size of the output based on the number of
86% columns and the total number of data points.
87ncols = 0;
88
89% Finally, we initialize the data to [].
90data = [];
91j=1;
92
93% Start processing.
94line = fgetl(fid);
95if ~ischar(line)
96    disp('Warning: file contains no header and no data')
97end;
98
99while line~=-1,
100    [data, ncols, errmsg, nxtindex] = sscanf(line, '%f');
101    % One slight problem, pointed out by Peter VanderWal: If the first
102    % character of the line is 'e', then this will scan as 0.00e+00.
103    % We can trap this case specifically by using the 'next index'
104    % output: in the case of a stripped 'e' the next index is one,
105    % indicating zero characters read.  See the help entry for 'sscanf'
106    % for more information on this output parameter.
107    % We loop through the file one line at a time until we find some
108    % data.  After that point we stop checking for header information.
109    % This part of the program takes most of the processing time, because
110    % fgetl is relatively slow (compared to fscanf, which we will use
111    % later).
112    while isempty(data)|(nxtindex==1)
113        no_lines = no_lines+1;
114        max_line = max([max_line, length(line)]);
115        % Create unique variable to hold this line of text information.
116        % Store the last-read line in this variable.
117        eval(['line', num2str(no_lines), '=line;'])
118        line = fgetl(fid);
119        if ~ischar(line)
120            disp('Warning: file contains no data')
121        break
122        end;
123        [data, ncols, errmsg, nxtindex] = sscanf(line, '%f');
124    end % while
125   
126    % Create header output from line information. The number of lines and
127    % the maximum line length are stored explicitly, and each line is
128    % stored in a unique variable using the 'eval' statement within the
129    % loop. Note that, if we knew a priori that the headers were 10 lines
130    % or less, we could use the STR2MAT function and save some work.
131    % First, initialize the header to an array of spaces.
132    header_mat(1:no_lines,1:max_line,j) = setstr(' '*ones(no_lines,max_line));
133    for i = 1:no_lines,
134        if length(eval(['line' num2str(i)])),
135            varname = eval(['line' num2str(i)]);
136        else
137            varname = ['line',num2str(i)];
138        end
139        % Note that we only assign this line variable to a subset of this
140        % row of the header array.  We thus ensure that the matrix sizes in
141        % the assignment are equal.
142        %eval(['header(i, 1:length(' varname ')) = ' varname ';']);
143        header_mat(i,1:length(varname),j)=varname;
144    end
145
146    % Now that we have read in the first line of data, we can skip the
147    % processing that stores header information, and just read in the
148    % rest of the data.
149    data = [data; fscanf(fid, '%f')];
150    % Resize output data, based on the number of columns (as returned
151    % from the sscanf of the first line of data) and the total number of
152    % data elements. Since the data was read in row-wise, and MATLAB
153    % stores data in columnwise format, we have to reverse the size
154    % arguments and then transpose the data.  If we read in irregularly
155    % spaced data, then the division we are about to do will not work.
156    % Therefore, we will trap the error with an EVAL call; if the reshape
157    % fails, we will just return the data as is.
158    eval('data_mat(1:length(data)/ncols,1:ncols,j) = reshape(data,ncols, length(data)/ncols)'';', '')
159    line = fgetl(fid);
160    j=j+1;
161    no_lines = 0;
162end
163
164fclose(fid);
165% And we're done!
166
167end
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