| 1 | #include <stdlib.h>
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| 2 | #include <string.h>
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| 3 |
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| 4 | #include "branap.h"
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| 5 | #include "minifits.h"
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| 6 | #include "strutilxx.h"
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| 7 | #include "sopnamsp.h"
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| 8 |
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| 9 | //--------------------------------------------------------------
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| 10 | // Projet BAORadio - (C) LAL/IRFU 2008-2010
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| 11 | // Classe de gestion des parametres programmes d'analyse
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| 12 | //--------------------------------------------------------------
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| 13 |
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| 14 | /* --Methode-- */
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| 15 | BRAnaParam::BRAnaParam(uint_4 nmean, uint_4 nzon, uint_4 npaqz)
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| 16 | {
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| 17 | outpath_="./";
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| 18 | fgfitsout_=false;
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| 19 | nmean_=nmean;
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| 20 | nbloc_=1;
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| 21 | imin_=imax_=0;
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| 22 | istep_=1;
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| 23 | rdsamefc_=true; // read paquets with same frame counter
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| 24 | freqmin_=freqmax_=0;
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| 25 | nbinfreq_=1;
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| 26 | paqsize_=16424;
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| 27 | nzones_=nzon;
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| 28 | npaqinzone_=npaqz;
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| 29 | fgdatafft_=false; fgforceraworfft_=false;
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| 30 | fgsinglechannel_=false; fgforcesingleortwochan_=false;
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| 31 | prtlevel_=0;
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| 32 | prtmodulo_=50000;
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| 33 | nbcalgrp_=1;
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| 34 | nthreads_=1;
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| 35 |
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| 36 | spec_win_sz_=0;
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| 37 | spw_ext_sz_=0;
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| 38 | nbmax_specwfiles_=0;
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| 39 |
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| 40 | vmin_=0.; vmax_=9e99;
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| 41 | nbands_=0; bandfirst_ = bandlast_ = 0;
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| 42 | fgdt_ = false;
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| 43 |
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| 44 | fgfreqfilter_=false; //JEC 1/2/11
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| 45 | medhalfwidth_=50; //JEC 6/4/11
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| 46 |
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| 47 | gainfile_="";
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| 48 |
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| 49 | proctimeduration_=9.e9;
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| 50 | fgtimeselect_=false;
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| 51 | }
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| 52 |
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| 53 | /* --Methode-- */
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| 54 | int BRAnaParam::DecodeArgs(int narg, char* arg[])
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| 55 | {
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| 56 | if ((narg>1)&&(strcmp(arg[1],"-h")==0)) return Usage(false);
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| 57 | if (narg<5) return Usage(true);
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| 58 |
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| 59 | bool okarg=false;
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| 60 | int ka=1;
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| 61 | while (ka<(narg-1)) {
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| 62 | if (strcmp(arg[ka],"-act")==0) {
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| 63 | action_=arg[ka+1];
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| 64 | ka+=2;
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| 65 | }
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| 66 | else if (strcmp(arg[ka],"-out")==0) {
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| 67 | outpath_=arg[ka+1];
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| 68 | size_t lenp=outpath_.size();
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| 69 | if ((lenp>0)&&(outpath_[lenp-1]!='/')) outpath_+='/';
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| 70 | ka+=2;
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| 71 | }
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| 72 | else if (strcmp(arg[ka],"-fitsout")==0) {
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| 73 | fgfitsout_=true;
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| 74 | ka++;
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| 75 | }
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| 76 | else if (strcmp(arg[ka],"-nmean")==0) {
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| 77 | nmean_=atoi(arg[ka+1]);
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| 78 | ka+=2;
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| 79 | }
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| 80 | else if (strcmp(arg[ka],"-nbloc")==0) {
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| 81 | nbloc_=atoi(arg[ka+1]);
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| 82 | ka+=2;
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| 83 | }
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| 84 | else if (strcmp(arg[ka],"-freq")==0) {
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| 85 | sscanf(arg[ka+1],"%d,%d,%d",&freqmin_,&freqmax_,&nbinfreq_);
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| 86 | ka+=2;
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| 87 | }
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| 88 | else if (strcmp(arg[ka],"-zones")==0) {
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| 89 | int nzon=4;
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| 90 | int npaqz=128;
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| 91 | sscanf(arg[ka+1],"%d,%d",&nzon,&npaqz);
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| 92 | nzones_=nzon; npaqinzone_=npaqz;
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| 93 | ka+=2;
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| 94 | }
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| 95 | else if (strcmp(arg[ka],"-prt")==0) {
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| 96 | sscanf(arg[ka+1],"%d,%ld",&prtlevel_,&prtmodulo_);
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| 97 | ka+=2;
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| 98 | }
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| 99 | else if (strcmp(arg[ka],"-nthr")==0) {
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| 100 | nthreads_=atoi(arg[ka+1]);
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| 101 | ka+=2;
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| 102 | }
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| 103 | else if (strcmp(arg[ka],"-nvcal")==0) {
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| 104 | nbcalgrp_=atoi(arg[ka+1]);
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| 105 | ka+=2;
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| 106 | }
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| 107 | else if (strcmp(arg[ka],"-nosfc")==0) {
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| 108 | rdsamefc_=false;
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| 109 | ka++;
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| 110 | }
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| 111 | else if (strcmp(arg[ka],"-singlechan")==0) {
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| 112 | fgsinglechannel_=true; fgforcesingleortwochan_ = true;
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| 113 | ka++;
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| 114 | }
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| 115 | else if (strcmp(arg[ka],"-twochan")==0) {
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| 116 | fgsinglechannel_=false; fgforcesingleortwochan_ = true;
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| 117 | ka++;
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| 118 | }
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| 119 | else if (strcmp(arg[ka],"-rawdata")==0) {
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| 120 | fgforceraworfft_=true; fgdatafft_ = false;
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| 121 | ka++;
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| 122 | }
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| 123 | else if (strcmp(arg[ka],"-fftdata")==0) {
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| 124 | fgforceraworfft_=true; fgdatafft_ = true;
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| 125 | ka++;
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| 126 | }
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| 127 | else if (strcmp(arg[ka],"-varcut")==0) {
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| 128 | sscanf(arg[ka+1],"%lg,%lg",&vmin_,&vmax_);
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| 129 | ka+=2;
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| 130 | }
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| 131 | else if (strcmp(arg[ka],"-nband")==0) {
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| 132 | sscanf(arg[ka+1],"%d,%d,%d",&nbands_,&bandfirst_,&bandlast_);
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| 133 | ka+=2;
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| 134 | }
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| 135 | else if (strcmp(arg[ka],"-filldt")==0) {
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| 136 | fgdt_=true;
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| 137 | ka++;
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| 138 | }
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| 139 | else if (strcmp(arg[ka],"-freqfilter")==0) {
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| 140 | fgfreqfilter_=true; ka++;
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| 141 | if (strcmp(arg[ka],"-")!=0) medhalfwidth_=atof(arg[ka]);
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| 142 | ka++;
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| 143 | }
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| 144 | //-tmproc hh:mm:ss,nseconds
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| 145 | else if (strcmp(arg[ka],"-tmproc")==0) {
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| 146 | int ah=0,am=0;
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| 147 | double as=0, als=0;
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| 148 | sscanf(arg[ka+1],"%d:%d:%lg,%lg",&ah,&am,&as,&als);
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| 149 | fgtimeselect_=true; proctimeduration_=als;
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| 150 | proctimestart_.SetHour(ah,am,as);
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| 151 | ka+=2;
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| 152 | }
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| 153 | else if (strcmp(arg[ka],"-gain")==0) {
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| 154 | gainfile_=arg[ka+1];
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| 155 | ka+=2;
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| 156 | }
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| 157 | else if (strcmp(arg[ka],"-tspwin")==0) {
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| 158 | int ai1=0,ai2=0,ai3=0;
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| 159 | sscanf(arg[ka+1],"%d,%d,%d",&ai1,&ai2,&ai3);
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| 160 | spec_win_sz_=ai1; spw_ext_sz_=ai2; nbmax_specwfiles_=ai3;
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| 161 | ka+=2;
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| 162 | }
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| 163 | else if (strcmp(arg[ka],"-in")==0) {
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| 164 | if ((narg-ka)<4) {
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| 165 | cout << " BRAnaParam::DecodeArgs() / Argument error " << endl;
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| 166 | return Usage(true);
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| 167 | }
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| 168 | sscanf(arg[ka+1],"%d,%d,%d",&imin_,&imax_,&istep_); ka+=2;
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| 169 | while(ka<(narg-1)) {
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| 170 | string inpath = arg[ka];
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| 171 | size_t lenp=inpath.size();
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| 172 | if (lenp<1) inpath="./";
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| 173 | if ((lenp>0)&&(inpath[lenp-1]!='/')) inpath+='/';
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| 174 | vector<string> fiblist;
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| 175 | string sa1 = arg[ka+1];
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| 176 | FillVStringFrString(sa1, fiblist, ',');
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| 177 | char dbuff[32];
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| 178 | for(size_t i=0; i<fiblist.size(); i++) {
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| 179 | sprintf(dbuff,"Fiber%d/",(int)atoi(fiblist[i].c_str()));
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| 180 | dirlist_.push_back(inpath+dbuff);
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| 181 | }
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| 182 | ka += 2;
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| 183 | }
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| 184 | okarg=true;
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| 185 | }
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| 186 | else ka++;
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| 187 | }
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| 188 |
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| 189 | if (!okarg) {
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| 190 | cout << " BRAnaParam::DecodeArgs() / Argument error " << endl;
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| 191 | return Usage(true);
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| 192 | }
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| 193 | return 0;
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| 194 | }
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| 195 |
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| 196 | /* --Methode-- */
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| 197 | int BRAnaParam::Usage(bool fgshort)
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| 198 | {
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| 199 | cout << " --- BRAnaParam : Reading/Processing BAORadio FITS files parameters " << endl;
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| 200 | cout << " Usage: prgname [-act ACT] [-out OutPath] [-fitsout] \n"
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| 201 | << " [-nmean NMean] [-zones NZones,nPaqinZone] \n"
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| 202 | << " [-nbloc NBloc] [-freq NumFreqMin,NumFreqMax,NBinFreq] \n"
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| 203 | << " [-prt lev,modulo] [-nvcal n] [-nthr n] [-nosfc]\n"
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| 204 | << " [-singlechan] [-twochan] [-fftdata] [-rawdata] \n"
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| 205 | << " [-freqfilter medhw] [-gain filename] [-varcut min,max] [-nband nband,first,last] \n"
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| 206 | << " [-freqfilter] [-gain filename] [-varcut min,max] [-nband nband,first,last] \n"
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| 207 | << " [-tmproc hh:mm:ss,nseconds] [-filldt] [-tspwin wsz,extsz,nfiles] \n"
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| 208 | << " -in Imin,Imax,Istep InPath FiberList [InPath2 FiberList2 InPath3 FiberList3 ...] \n" << endl;
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| 209 | if (fgshort) {
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| 210 | cout << " prgname -h for detailed instructions" << endl;
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| 211 | return 5;
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| 212 | }
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| 213 | cout << " -act Action: cube3d or vis or viscktt or mspec \n"
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| 214 | << " cube3d: create 3D fits cubes \n"
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| 215 | << " vis: compute visibilites (vismfib program) \n"
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| 216 | << " viscktt: compute visibilities and check TimeTag/FrameCounter (vismfib program)\n"
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| 217 | << " mspec: compute and save mean spectra for each channel \n"
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| 218 | << " bproc: run BRBaseProcessor for debug/printing (use -prt) \n"
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| 219 | << " -out OutPath: Output directory name \n"
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| 220 | << " -fitsout : Force FITS format for output files \n"
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| 221 | << " -nmean NMean: Number of packet used for spectra/visibility computation \n"
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| 222 | << " -nbloc NBloc: Number of MemMgr blocs in output file\n"
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| 223 | << " -zones NZones,NbPaqinZone : Number of Zones and number of paquets in one zone (RAcqMemZoneMgr) \n"
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| 224 | << " -freq NumFreqMin,NumFreqMax,NBinFreq : Frequency zone and number of bins \n"
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| 225 | << " -prt lev,modulo : Print level (0,1,2...) and print counter modulo (10000, 50000 ...) \n"
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| 226 | << " -nvcal n : number of BRVisibilityCalculator objects running in parallel in BRVisCalcGroup (default=1) \n"
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| 227 | << " -nthr n : number of threads for parallel execution in BRVisibilityCalculator (default=1) \n"
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| 228 | << " -nosfc : Don't force reading with SAME FrameCounter \n"
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| 229 | << " -singlechan : Force one channel per fiber \n"
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| 230 | << " -twochan : Force two channels per fiber \n"
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| 231 | << " -rawdata : Force raw data mode (firmware raw) \n"
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| 232 | << " -fftdata : Force FFT data mode (firmware fft) \n"
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| 233 | << " -varcut min,max : min-max cut on variance \n"
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| 234 | << " -nband nband,first,last: numbers of freq. bands and first and last bands used for cuts \n"
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| 235 | << " -tmproc hh:mm:ss,nseconds : processing time window definition \n"
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| 236 | << " -filldt : force data table filling \n"
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| 237 | << " -freqfilter medhw: force median filtering on the frequencies \n"
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| 238 | << " with half window width medhw (use - for default=" << medhalfwidth_ << ") \n"
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| 239 | << " -gain filename : spectral response fits file name \n"
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| 240 | << " -tspwin wsz,extsz,nfiles : spectra time (paquet no) window (ex: -tspwin 120,4,5) \n"
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| 241 | << " wsz,extsz= window,extension size; nfiles= maximum number of windows saved \n"
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| 242 | << " -in : input files/directory definition : \n"
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| 243 | << " Imin,Imax,Istep: fits files signalII.fits Imin<=II<=Imax Istep=increment \n"
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| 244 | << " InPath: Input directerory fits files in InPath/FiberJJ directory \n"
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| 245 | << " FiberList: List of fiber numbers (JJ - Ex: 2,1,4 ) \n" << endl;
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| 246 | return 1;
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| 247 | }
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| 248 |
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| 249 | /* --Fonction-- */
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| 250 | int BRAnaParam::PaqSizeFromFits()
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| 251 | {
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| 252 | uint_4 paqsz, npaqf;
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| 253 | char flnm[1024];
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| 254 | sprintf(flnm,"%s/signal%d.fits",dirlist_[0].c_str(),imin_);
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| 255 | bool fgdatafft_in_fits=false;
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| 256 | bool fgsinglechan_in_fits=false;
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| 257 | SOPHYA::TimeStamp tmstart;
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| 258 | int rc = DecodeMiniFitsHeader(flnm,paqsize_, npaqinfile_,fgdatafft_in_fits, fgsinglechan_in_fits,tmstart);
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| 259 | if (!fgforcesingleortwochan_) fgsinglechannel_=fgsinglechan_in_fits;
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| 260 | if (!fgforceraworfft_) fgdatafft_=fgdatafft_in_fits;
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| 261 | if (fgtimeselect_) {
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| 262 | int year,month,day;
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| 263 | tmstart.GetDate(year,month,day);
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| 264 | proctimestart_.SetDate(year,month,day);
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| 265 | proctimeend_.Set(proctimestart_.ToDays()+proctimeduration_/86400.);
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| 266 | }
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| 267 | return rc;
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| 268 | }
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| 269 |
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| 270 | /* --Fonction-- */
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| 271 | ostream& BRAnaParam::Print(ostream& os)
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| 272 | {
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| 273 | os << " BRAnaParam::Print() dirlist_.size()=" << dirlist_.size() << " Input directories: " << endl;
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| 274 | for(size_t k=0; k< dirlist_.size(); k++)
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| 275 | cout << k+1 << " : " << dirlist_[k] << endl;
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| 276 | cout << " IMin= " << imin_ << " IMax= " << imax_ << " IStep= " << istep_
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| 277 | << ((rdsamefc_)?" SameFrameCounter read mode":" AllOKPaquets read mode ") << endl;
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| 278 | if (fgtimeselect_) {
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| 279 | cout << " Processing time window, StartTime=" << proctimestart_ << " duration= " << proctimeduration_
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| 280 | << " EndTime=" << proctimeend_ << endl;
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| 281 | }
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| 282 | cout << " OutPath= " << outpath_ << (fgfitsout_?" force FITS output":" PPF output") << endl;
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| 283 | cout << " Action=" << action_ << " NMean=" << nmean_ << " NBloc=" << nbloc_ << endl;
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| 284 | cout << " FreqMin= " << freqmin_ << " FreqMax= " << freqmax_ << " NBinFreq= " << nbinfreq_ << endl;
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| 285 | cout<< ((fgdt_)?" Fill DadaTable ":" NO DataTable") << endl;
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| 286 | cout << " GainFileName=" << gainfile_ << " Variance: Min= " << vmin_ << " Max= " << vmax_
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| 287 | << " Bands: N=" << nbands_ << " First=" << bandfirst_ << " Last=" << bandlast_
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| 288 | << endl;
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| 289 | if (fgfreqfilter_) {
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| 290 | cout << " force frequence median filtering (action gain), half width =" << medhalfwidth_
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| 291 | << endl;
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| 292 | } else {
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| 293 | cout<<" NO freq. filtering" << endl;
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| 294 | }
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| 295 | cout << " Spectra TimeWindow (Nb.Paquets) Size=" << spec_win_sz_ << " ExtensionSize=" << spw_ext_sz_
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| 296 | << " MaxNbFile=" << nbmax_specwfiles_ << endl;
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| 297 | cout << " PaqSize=" << paqsize_ << " - NZones=" << nzones_ << " NPaqZone=" << npaqinzone_
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| 298 | << " PrtLevel=" << prtlevel_ << " PrtCntModulo=" << prtmodulo_ << endl;
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| 299 | cout << " AcqDataMode: " << ((fgdatafft_)?" Data_FFT " : " Data_Raw " )
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| 300 | << ((fgsinglechannel_)?" SingleChannel " : " TwoChannels " ) << endl;
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| 301 | cout << " NbVisibCalculator in Group: " << nbcalgrp_ << " with N//threads: " << nthreads_ << endl;
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| 302 |
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| 303 |
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| 304 | return os;
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| 305 | }
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| 306 |
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| 307 | /* --Fonction-- */
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| 308 | int BRAnaParam::DecodeMiniFitsHeader(const char* filename, uint_4& paqsz, uint_4& npaq,
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| 309 | bool& fgdatafft, bool& fgsinglechannel, SOPHYA::TimeStamp& tmstart)
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| 310 | {
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| 311 | cout << " DecodeMiniFitsHeader - Opening file: " << filename << endl;
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| 312 | MiniFITSFile mff(filename, MF_Read);
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| 313 | string acqmode=mff.GetKeyValue("ACQMODE");
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| 314 | cout << "DecodeMiniFitsHeader()... Type=" << mff.DataTypeToString() << " NAxis1=" << mff.NAxis1()
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| 315 | << " NAxis2=" << mff.NAxis2() << " AcqMode=" << acqmode << endl;
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| 316 | paqsz = mff.NAxis1();
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| 317 | npaq = mff.NAxis2();
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| 318 | if (acqmode.substr(0,3)=="fft") fgdatafft=true;
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| 319 | if (acqmode.find("1c") < acqmode.length()) fgsinglechannel=true;
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| 320 | string fkvs=mff.GetKeyValue("DATEOBS");
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| 321 | if (fkvs.length()>0) tmstart.Set(fkvs);
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| 322 | fkvs=mff.GetKeyValue("TMSTART");
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| 323 | if (fkvs.length()>0) tmstart.Set(fkvs);
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| 324 | return 0;
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| 325 | }
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| 326 |
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![(please configure the [header_logo] section in trac.ini)](/PI/chrome/site/your_project_logo.png){kind=logo}
