source: Sophya/trunk/AddOn/TAcq/branap.cc@ 4016

Last change on this file since 4016 was 4016, checked in by ansari, 14 years ago

Ajout de commentaires d'autodocumentation Doxygen, Reza 12/08/2011

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1#include <stdlib.h>
2#include <string.h>
3
4#include "branap.h"
5#include "minifits.h"
6#include "strutilxx.h"
7#include "sopnamsp.h"
8
9//--------------------------------------------------------------
10// Projet BAORadio - (C) LAL/IRFU 2008-2010
11// Classe de gestion des parametres programmes d'analyse
12//--------------------------------------------------------------
13/*!
14 \class BRAnaParam
15 \ingroup TAcq
16
17 \brief parameter set for analysis programs (specmfib.cc , vismfib.cc)
18*/
19
20/* --Methode-- */
21BRAnaParam::BRAnaParam(uint_4 nmean, uint_4 nzon, uint_4 npaqz)
22{
23 outpath_="./";
24 fgfitsout_=false;
25 imin_=imax_=0;
26 istep_=1;
27 rdsamefc_=true; // read paquets with same frame counter
28 freqmin_=0; freqmax_=-1;
29 nbinfreq_=1;
30 paqsize_=16424;
31 nzones_=nzon;
32 npaqinzone_=npaqz;
33 fgdatafft_=false; fgforceraworfft_=false;
34 fgsinglechannel_=false; fgforcesingleortwochan_=false;
35 prtlevel_=0;
36 prtmodulo_=50000;
37 prtmodulo2_=10;
38
39 nmean_=nmean;
40 fgtimeinterval_=false;
41 timeinterval_=1.;
42 nbloc_=1;
43
44 nbcalgrp_=1;
45 nthreads_=1;
46
47 spec_win_sz_=0;
48 spw_ext_sz_=0;
49 nbmax_specwfiles_=0;
50
51 vmin_=0.; vmax_=9e99;
52 nbands_=0; bandfirst_ = bandlast_ = 0;
53 fgdtpaq_ = fgdtms_ = false;
54
55 fgfreqfilter_=false; //JEC 1/2/11
56 medhalfwidth_=50; //JEC 6/4/11
57
58 gainfile_="";
59
60 proctimeduration_=9.e9;
61 fgtimeselect_=false;
62}
63
64/* --Methode-- */
65int BRAnaParam::DecodeArgs(int narg, char* arg[])
66{
67 if ((narg>1)&&(strcmp(arg[1],"-h")==0)) return Usage(false);
68 if (narg<5) return Usage(true);
69
70 bool okarg=false;
71 int ka=1;
72 while (ka<(narg-1)) {
73 if (strcmp(arg[ka],"-act")==0) {
74 action_=arg[ka+1];
75 ka+=2;
76 }
77 else if (strcmp(arg[ka],"-out")==0) {
78 outpath_=arg[ka+1];
79 size_t lenp=outpath_.size();
80 if ((lenp>0)&&(outpath_[lenp-1]!='/')) outpath_+='/';
81 ka+=2;
82 }
83 else if (strcmp(arg[ka],"-fitsout")==0) {
84 fgfitsout_=true;
85 ka++;
86 }
87 else if (strcmp(arg[ka],"-nmean")==0) {
88 nmean_=atoi(arg[ka+1]);
89 ka+=2;
90 }
91 else if (strcmp(arg[ka],"-tmint")==0) {
92 timeinterval_=atof(arg[ka+1]);
93 fgtimeinterval_=true; ka+=2;
94 }
95 else if (strcmp(arg[ka],"-nbloc")==0) {
96 nbloc_=atoi(arg[ka+1]);
97 ka+=2;
98 }
99 else if (strcmp(arg[ka],"-freq")==0) {
100 sscanf(arg[ka+1],"%d,%d,%d",&freqmin_,&freqmax_,&nbinfreq_);
101 ka+=2;
102 }
103 else if (strcmp(arg[ka],"-zones")==0) {
104 int nzon=4;
105 int npaqz=128;
106 sscanf(arg[ka+1],"%d,%d",&nzon,&npaqz);
107 nzones_=nzon; npaqinzone_=npaqz;
108 ka+=2;
109 }
110 else if (strcmp(arg[ka],"-prt")==0) {
111 sscanf(arg[ka+1],"%d,%ld,%ld",&prtlevel_,&prtmodulo_,&prtmodulo2_);
112 ka+=2;
113 }
114 else if (strcmp(arg[ka],"-nthr")==0) {
115 nthreads_=atoi(arg[ka+1]);
116 ka+=2;
117 }
118 else if (strcmp(arg[ka],"-nvcal")==0) {
119 nbcalgrp_=atoi(arg[ka+1]);
120 ka+=2;
121 }
122 else if (strcmp(arg[ka],"-nosfc")==0) {
123 rdsamefc_=false;
124 ka++;
125 }
126 else if (strcmp(arg[ka],"-singlechan")==0) {
127 fgsinglechannel_=true; fgforcesingleortwochan_ = true;
128 ka++;
129 }
130 else if (strcmp(arg[ka],"-twochan")==0) {
131 fgsinglechannel_=false; fgforcesingleortwochan_ = true;
132 ka++;
133 }
134 else if (strcmp(arg[ka],"-rawdata")==0) {
135 fgforceraworfft_=true; fgdatafft_ = false;
136 ka++;
137 }
138 else if (strcmp(arg[ka],"-fftdata")==0) {
139 fgforceraworfft_=true; fgdatafft_ = true;
140 ka++;
141 }
142 else if (strcmp(arg[ka],"-varcut")==0) {
143 sscanf(arg[ka+1],"%lg,%lg",&vmin_,&vmax_);
144 ka+=2;
145 }
146 else if (strcmp(arg[ka],"-nband")==0) {
147 sscanf(arg[ka+1],"%d,%d,%d",&nbands_,&bandfirst_,&bandlast_);
148 ka+=2;
149 }
150 else if (strcmp(arg[ka],"-fdtpaq")==0) {
151 fgdtpaq_=true;
152 ka++;
153 }
154 else if (strcmp(arg[ka],"-fdtms")==0) {
155 fgdtms_=true;
156 ka++;
157 }
158 else if (strcmp(arg[ka],"-freqfilter")==0) {
159 fgfreqfilter_=true; ka++;
160 if (strcmp(arg[ka],"-")!=0) medhalfwidth_=atof(arg[ka]);
161 ka++;
162 }
163 //-tmproc hh:mm:ss,nseconds
164 else if (strcmp(arg[ka],"-tmproc")==0) {
165 int ah=0,am=0;
166 double as=0, als=0;
167 sscanf(arg[ka+1],"%d:%d:%lg,%lg",&ah,&am,&as,&als);
168 fgtimeselect_=true; proctimeduration_=als;
169 proctimestart_.SetHour(ah,am,as);
170 ka+=2;
171 }
172 else if (strcmp(arg[ka],"-gain")==0) {
173 gainfile_=arg[ka+1];
174 ka+=2;
175 }
176 else if (strcmp(arg[ka],"-tspwin")==0) {
177 int ai1=0,ai2=0,ai3=0;
178 sscanf(arg[ka+1],"%d,%d,%d",&ai1,&ai2,&ai3);
179 spec_win_sz_=ai1; spw_ext_sz_=ai2; nbmax_specwfiles_=ai3;
180 ka+=2;
181 }
182 else if (strcmp(arg[ka],"-in")==0) {
183 if ((narg-ka)<4) {
184 cout << " BRAnaParam::DecodeArgs() / Argument error " << endl;
185 return Usage(true);
186 }
187 sscanf(arg[ka+1],"%d,%d,%d",&imin_,&imax_,&istep_); ka+=2;
188 while(ka<(narg-1)) {
189 string inpath = arg[ka];
190 size_t lenp=inpath.size();
191 if (lenp<1) inpath="./";
192 if ((lenp>0)&&(inpath[lenp-1]!='/')) inpath+='/';
193 vector<string> fiblist;
194 string sa1 = arg[ka+1];
195 FillVStringFrString(sa1, fiblist, ',');
196 char dbuff[32];
197 for(size_t i=0; i<fiblist.size(); i++) {
198 sprintf(dbuff,"Fiber%d/",(int)atoi(fiblist[i].c_str()));
199 dirlist_.push_back(inpath+dbuff);
200 }
201 ka += 2;
202 }
203 okarg=true;
204 }
205 else ka++;
206 }
207
208 if (!okarg) {
209 cout << " BRAnaParam::DecodeArgs() / Argument error " << endl;
210 return Usage(true);
211 }
212 return 0;
213}
214
215/* --Methode-- */
216int BRAnaParam::Usage(bool fgshort)
217{
218 cout << " --- BRAnaParam : Reading/Processing BAORadio FITS files parameters " << endl;
219 cout << " Usage: prgname [-act ACT] [-out OutPath] [-fitsout] \n"
220 << " [-nmean NMean] [-tmint dtime] [-zones NZones,nPaqinZone] \n"
221 << " [-nbloc NBloc] [-freq NumFreqMin,NumFreqMax,NBinFreq] \n"
222 << " [-prt lev,modulo,mod2] [-nvcal n] [-nthr n] [-nosfc]\n"
223 << " [-singlechan] [-twochan] [-fftdata] [-rawdata] \n"
224 << " [-freqfilter medhw] [-gain filename] [-varcut min,max] [-nband nband,first,last] \n"
225 << " [-freqfilter] [-gain filename] [-varcut min,max] [-nband nband,first,last] \n"
226 << " [-tmproc hh:mm:ss,nseconds] [-fdtpaq] [-fdtms] [-tspwin wsz,extsz,nfiles] \n"
227 << " -in Imin,Imax,Istep InPath FiberList [InPath2 FiberList2 InPath3 FiberList3 ...] \n" << endl;
228 if (fgshort) {
229 cout << " prgname -h for detailed instructions" << endl;
230 return 5;
231 }
232 cout << " -act Action: cube3d or vis or viscktt or mspec \n"
233 << " cube3d: create 3D fits cubes \n"
234 << " vis: compute visibilites (vismfib program) \n"
235 << " viscktt: compute visibilities and check TimeTag/FrameCounter (vismfib program)\n"
236 << " mspec: compute and save mean spectra for each channel \n"
237 << " bproc: run BRBaseProcessor for debug/printing (use -prt) \n"
238 << " -out OutPath: Output directory name \n"
239 << " -fitsout : Force FITS format for output files \n"
240 << " -nmean NMean: Number of packet used for spectra/visibility computation \n"
241 << " -tmint dtime: Time interval definition (instead of nmean) for spectra/visibility computation \n"
242 << " -nbloc NBloc: Number of MemMgr blocs in output file\n"
243 << " -zones NZones,NbPaqinZone : Number of Zones and number of paquets in one zone (RAcqMemZoneMgr) \n"
244 << " -freq NumFreqMin,NumFreqMax,NBinFreq : Frequency zone and number of bins \n"
245 << " -prt lev,modulo,mod2 : Print level (0,1,2...), counter modulo (10000,50000...), mod2 (10,50...) for filenums \n"
246 << " -nvcal n : number of BRVisibilityCalculator objects running in parallel in BRVisCalcGroup (default=1) \n"
247 << " -nthr n : number of threads for parallel execution in BRVisibilityCalculator (default=1) \n"
248 << " -nosfc : Don't force reading with SAME FrameCounter \n"
249 << " -singlechan : Force one channel per fiber \n"
250 << " -twochan : Force two channels per fiber \n"
251 << " -rawdata : Force raw data mode (firmware raw) \n"
252 << " -fftdata : Force FFT data mode (firmware fft) \n"
253 << " -varcut min,max : min-max cut on variance \n"
254 << " -nband nband,first,last: numbers of freq. bands and first and last bands used for cuts\n"
255 << " -tmproc hh:mm:ss,nseconds : processing time window definition \n"
256 << " -fdtpaq : force per paquet data table filling (specmfib) \n"
257 << " -fdtms : force time averaged/filtered data table filling; use -freq for defining bands (specmfib)\n"
258 << " -freqfilter medhw: force median filtering on the frequencies \n"
259 << " with half window width medhw (use - for default=" << medhalfwidth_ << ") \n"
260 << " -gain filename : spectral response fits file name \n"
261 << " -tspwin wsz,extsz,nfiles : spectra time (paquet no) window (ex: -tspwin 120,4,5) \n"
262 << " wsz,extsz= window,extension size; nfiles= maximum number of windows saved \n"
263 << " -in : input files/directory definition : \n"
264 << " Imin,Imax,Istep: fits files signalII.fits Imin<=II<=Imax Istep=increment \n"
265 << " InPath: Input directerory fits files in InPath/FiberJJ directory \n"
266 << " FiberList: List of fiber numbers (JJ - Ex: 2,1,4 ) \n" << endl;
267 return 1;
268}
269
270/* --Fonction-- */
271int BRAnaParam::PaqSizeFromFits()
272{
273 uint_4 paqsz, npaqf;
274 char flnm[1024];
275 sprintf(flnm,"%s/signal%d.fits",dirlist_[0].c_str(),imin_);
276 bool fgdatafft_in_fits=false;
277 bool fgsinglechan_in_fits=false;
278 SOPHYA::TimeStamp tmstart;
279 int rc = DecodeMiniFitsHeader(flnm,paqsize_, npaqinfile_,fgdatafft_in_fits, fgsinglechan_in_fits,tmstart);
280 if (!fgforcesingleortwochan_) fgsinglechannel_=fgsinglechan_in_fits;
281 if (!fgforceraworfft_) fgdatafft_=fgdatafft_in_fits;
282 if (fgtimeselect_) {
283 int year,month,day;
284 tmstart.GetDate(year,month,day);
285 proctimestart_.SetDate(year,month,day);
286 proctimeend_.Set(proctimestart_.ToDays()+proctimeduration_/86400.);
287 }
288 return rc;
289}
290
291/* --Fonction-- */
292ostream& BRAnaParam::Print(ostream& os)
293{
294 os << " BRAnaParam::Print() dirlist_.size()=" << dirlist_.size() << " Input directories: " << endl;
295 for(size_t k=0; k< dirlist_.size(); k++)
296 cout << k+1 << " : " << dirlist_[k] << endl;
297 cout << " IMin= " << imin_ << " IMax= " << imax_ << " IStep= " << istep_
298 << ((rdsamefc_)?" SameFrameCounter read mode":" AllOKPaquets read mode ") << endl;
299 if (fgtimeselect_) {
300 cout << " Processing time window, StartTime=" << proctimestart_ << " duration= " << proctimeduration_
301 << " EndTime=" << proctimeend_ << endl;
302 }
303 cout << " OutPath= " << outpath_ << (fgfitsout_?" force FITS output":" PPF output") << endl;
304 cout << " Action=" << action_ << " NMean=" << nmean_ << " NBloc=" << nbloc_ << endl;
305 cout << ((fgtimeinterval_)?" Time Interval mode for visi/spectra ":" NPaq Interval mode")
306 << " TimeInterval=" << timeinterval_ << " seconds " << endl;
307 cout << " FreqMin= " << freqmin_ << " FreqMax= " << freqmax_ << " NBinFreq= " << nbinfreq_ << endl;
308 if (fgdtpaq_) cout<< " Fill Per Paquet DadaTable ";
309 if (fgdtms_) cout<< " Fill Time Averaged/Filtered binned power DataTable ";
310 if (!fgdtpaq_&&!fgdtms_) cout << " NO DataTable " << endl;
311 else cout << endl;
312 cout << " GainFileName=" << gainfile_ << " Variance: Min= " << vmin_ << " Max= " << vmax_
313 << " Bands: N=" << nbands_ << " First=" << bandfirst_ << " Last=" << bandlast_
314 << endl;
315 if (fgfreqfilter_) {
316 cout << " force frequence median filtering (action gain), half width =" << medhalfwidth_
317 << endl;
318 } else {
319 cout<<" NO freq. filtering" << endl;
320 }
321 cout << " Spectra TimeWindow (Nb.Paquets) Size=" << spec_win_sz_ << " ExtensionSize=" << spw_ext_sz_
322 << " MaxNbFile=" << nbmax_specwfiles_ << endl;
323 cout << " PaqSize=" << paqsize_ << " - NZones=" << nzones_ << " NPaqZone=" << npaqinzone_
324 << " PrtLevel=" << prtlevel_ << " PrtCntModulo=" << prtmodulo_ << "," << prtmodulo2_ << endl;
325 cout << " AcqDataMode: " << ((fgdatafft_)?" Data_FFT " : " Data_Raw " )
326 << ((fgsinglechannel_)?" SingleChannel " : " TwoChannels " ) << endl;
327 cout << " NbVisibCalculator in Group: " << nbcalgrp_ << " with N//threads: " << nthreads_ << endl;
328
329
330 return os;
331}
332
333/* --Fonction-- */
334int BRAnaParam::DecodeMiniFitsHeader(const char* filename, uint_4& paqsz, uint_4& npaq,
335 bool& fgdatafft, bool& fgsinglechannel, SOPHYA::TimeStamp& tmstart)
336{
337 cout << " DecodeMiniFitsHeader - Opening file: " << filename << endl;
338 MiniFITSFile mff(filename, MF_Read);
339 string acqmode=mff.GetKeyValue("ACQMODE");
340 cout << "DecodeMiniFitsHeader()... Type=" << mff.DataTypeToString() << " NAxis1=" << mff.NAxis1()
341 << " NAxis2=" << mff.NAxis2() << " AcqMode=" << acqmode << endl;
342 paqsz = mff.NAxis1();
343 npaq = mff.NAxis2();
344 if (acqmode.substr(0,3)=="fft") fgdatafft=true;
345 if (acqmode.substr(3,3)=="fft") fgdatafft=true; // pour ordfft1c ordfft2c - Cedric Viou, 15 Juin 2011
346 if (acqmode.find("1c") < acqmode.length()) fgsinglechannel=true;
347 string fkvs=mff.GetKeyValue("DATEOBS");
348 if (fkvs.length()>0) tmstart.Set(fkvs);
349 fkvs=mff.GetKeyValue("TMSTART");
350 if (fkvs.length()>0) tmstart.Set(fkvs);
351 return 0;
352}
353
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