source: Sophya/trunk/ArchTOIPipe/Kernel/fitstoirdr.cc@ 1731

#include "fitstoirdr.h"
#include "toimanager.h"
#include <sched.h>


FITSTOIReader::FITSTOIReader(string fn,int buff_sz) {
  fname = fn;
  allfn.push_back(fn);
  Buff_Sz = (buff_sz>0) ? buff_sz: 1000;
  cout<<"FITSTOIReader::FITSTOIReader"<<endl;
  cout<<"FITSTOIReader::inited "<<inited<<" bsz="<<Buff_Sz<<endl;
  name = "rdr";
  fptr = NULL;
  totnscount = 0;

  implicitSN = false;
  implicitSNStart = 0;
}

FITSTOIReader::~FITSTOIReader() {
}

void FITSTOIReader::setImplicitSN(int snStart) {
  implicitSN = true;
  implicitSNStart = snStart;
}

pthread_mutex_t fits_mutex = PTHREAD_MUTEX_INITIALIZER;
void fits_lock();
void fits_unlock();

void fits_lock() {
  pthread_mutex_lock(&fits_mutex);
}
void fits_unlock() {
  pthread_mutex_unlock(&fits_mutex);
}

void FITSTOIReader::openFile(string fn) {
  fits_lock();
  if (fptr) {
    fits_close_file(fptr,&fstatus);
    fptr = NULL;
  }
  fname = fn;
  cout << "FITSTOIReader::open FileName=" << fname << endl;
  fstatus = 0;
  // Open file
  fits_open_file(&fptr,fname.c_str(),READONLY,&fstatus);
  if (fstatus != 0) {
    fits_report_error(stderr, fstatus);
    fits_unlock();
    throw IOExc("fitsio error");
  }
  
  // Go to first extension, which should be a BINTABLE
  
  int simple, bitpix, naxis;
  long naxes;
  long pcount, gcount;
  int extend;
  fits_read_imghdr(fptr, 1, &simple, &bitpix, 
                   &naxis, &naxes, &pcount, &gcount, &extend, &fstatus);
  
  fits_movabs_hdu(fptr, 2, NULL, &fstatus);
  
  fits_get_num_cols(fptr,&ncols,&fstatus);
  fits_get_num_rows(fptr,&nrows,&fstatus);

  cout << "FITSTOIReader cols = " << ncols << " rows=" << nrows << endl;
  if (implicitSN) {
    firstSn = implicitSNStart;
  } else {
    int anyNul;
    double y;
    fits_read_col_dbl(fptr,1,1,1,1,0,&y,&anyNul,&fstatus);
    firstSn = (int) (y+.1);
  }
  fits_unlock();  
}

void FITSTOIReader::init() {
  openFile(allfn.front());

  fits_lock();
  // si pas implicitSN, la premiere colonne est le sampleNum. 
  // Sinon, le samplenum est la fitsline + offset.
  int itoi=-1;
  int col1 = implicitSN ? 0 : 1;
  for (int i=col1; i<ncols; i++) {
    char templt[10];
    sprintf(templt, "%d", i+1);
    char colname[200];
    int colnum;
    fits_get_colname(fptr, CASESEN, templt, colname, &colnum, &fstatus);
    cout << "FITSTOIReader col " << colname << endl;
    if (!strncmp(colname, "fg_", 3)) {
      colsinput[itoi].second=true;
    } else {
      declareOutput(colname);
      itoi++;
      colsinput[itoi] = pair<int,bool>(i,false);
    }
  }
  fits_unlock();

  snBegin = firstSn;

  openFile(allfn.back());
  snEnd = firstSn+nrows-1;
  cout << "FITSTOIReader range " << snBegin << " -> " << snEnd << endl;
}

int FITSTOIReader::calcMinOut() {
  TOIManager* mgr = TOIManager::getManager();
  int firstReq = mgr->getRequestedBegin();
  return snBegin > firstReq ? snBegin : firstReq;
}

int FITSTOIReader::calcMaxOut() {
  TOIManager* mgr = TOIManager::getManager();
  int lastReq = mgr->getRequestedEnd();
  return snEnd < lastReq ? snEnd : lastReq;
}

void FITSTOIReader::addFile(string fn) {
  allfn.push_back(fn);
}

void FITSTOIReader::run() {
  for (vector<string>::iterator i=allfn.begin(); i!=allfn.end(); i++) {
    openFile(*i);
    //run1();
    run2();
  }
}

// run 1 : deprecated. NON MAINTENU. Incompatible avec implicit SN.
void FITSTOIReader::run1() {
  // Il faudrait optimiser en fonction de ce qui a ete demande comme samplenum,
  // mais cela implique de gerer aussi bien echant uniforme que non.
  // On pourrait aussi lire plusieurs elements d'un coup.
  int ncols = outIx.size();
  cout << "reader reading... NRows=" << nrows << " firstSn= " 
       << firstSn << endl;

  double* tabdata = new double[getNOut()]; 
  uint_8* tabflag = new uint_8[getNOut()]; 

  for (long i=0; i<nrows; i++) {  
    int anyNul;
    double y;
    fits_lock();
    fits_read_col_dbl(fptr,1,i+1,1,1,0,&y,&anyNul,&fstatus);
    //fits_unlock();
    long sn = (long) (y+.1); 
    TOIManager* mgr = TOIManager::getManager();
    if (sn > mgr->getRequestedEnd()) {fits_unlock(); break;}
    if (sn < mgr->getRequestedBegin()) {fits_unlock(); continue;}
    // if (sn < mgr->getRequestedBegin()+10) cout << "rdr out " << sn << endl;
    int k;
    for (k=0; k<getNOut(); k++) {
      int j = colsinput[k].first;
      if ( !checkOutputTOIIndex(k) )  continue;  // Reza - Si TOI non connecte
      //fits_lock();
      fits_read_col_dbl(fptr,j+1,i+1,1,1,0,&y,&anyNul,&fstatus);
      tabdata[k] = y;
      long flg = 0;
      if (colsinput[k].second) {
        fits_read_col_lng(fptr,j+2,i+1,1,1,0,&flg,&anyNul,&fstatus);
      }
      tabflag[k] = flg;
      //      fits_unlock();
      //putData(k, sn, y, flg);
    }
    fits_unlock();
    for (k=0; k<getNOut(); k++) {
      putData(k, sn, tabdata[k], tabflag[k]);
    }
    /*     if (i%50==0)  {
      // fits_unlock();
      sched_yield();
      //fits_lock();
      }*/
    totnscount++;
  }
  //fits_unlock();
  delete[] tabflag;
  delete[] tabdata;
  cout << "reader done reading... " << pthread_self() << endl;
}

void FITSTOIReader::run2()
// ---- Version bufferisee (Christophe 20/10/2001)
{
 int ncols = outIx.size();
 cout<<"reader reading... NRows="<<nrows<<" firstSn= " <<firstSn<<endl;

 //////// Prepare buffer, allocate memory
 double *samplenum = new double[Buff_Sz];
 vector<double*> colval;
 vector<long*> colflg;
 for(int k=0; k<getNOut(); k++) {
   colval.push_back(NULL);
   colflg.push_back(NULL);
   if(!checkOutputTOIIndex(k)) continue;
   colval[k] = new double[Buff_Sz];
   if(colsinput[k].second) colflg[k] = new long[Buff_Sz];
 }

 //////// Read data and put into pipe
 long ideb=-1,ifin=-1;
 for(long i=0; i<nrows; i++) {

   // faut-il lire dans le fichier fits ?
   if(i<ideb || i>ifin) {
     ideb = i;
     ifin = ideb+Buff_Sz-1;
     if(ifin>=nrows) ifin=nrows-1;
     long n = ifin-ideb+1;
     int anyNul;
     fits_lock();
     if (implicitSN) {
       for (long j=0; j<Buff_Sz; j++) {
         samplenum[j] = j+ideb+implicitSNStart;
       }
     } else {
       fits_read_col_dbl(fptr,1,ideb+1,1,n,0,samplenum,&anyNul,&fstatus);
     }
     for(int k=0; k<getNOut(); k++) {
       if(colval[k]==NULL)  continue;
       int j = colsinput[k].first;
       fits_read_col_dbl(fptr,j+1,ideb+1,1,n,0,colval[k],&anyNul,&fstatus);
       if(colflg[k]==NULL)  continue;
       fits_read_col_lng(fptr,j+2,ideb+1,1,n,0,colflg[k],&anyNul,&fstatus);
     }
     if(fstatus!=0) {
       fits_report_error(stderr,fstatus);
       throw RangeCheckError("FITSTOIReader::run2: Error Reading Fits file\n");
     }
     fits_unlock();
   }

   long ip = i-ideb; // pointeurs dans les buffers
   long sn = (long) (samplenum[ip]+.1);
   TOIManager* mgr = TOIManager::getManager();
   if(sn > mgr->getRequestedEnd()) break;
   if(sn < mgr->getRequestedBegin()) continue;
   for(int k=0; k<getNOut(); k++) {
     if(colval[k]==NULL)  continue;
     uint_8 flg = (colflg[k]==NULL)? 0: colflg[k][ip];
     putData(k,sn,colval[k][ip],flg);
   }
   totnscount++;
 }

 //////// des-allocate buffers
 delete [] samplenum;
 for(int k=0; k<getNOut(); k++) {
   if(colval[k]!=NULL) delete [] colval[k];
   if(colflg[k]!=NULL) delete [] colflg[k];
 }
 colval.resize(0); colflg.resize(0);

 cout << "reader done reading... " << pthread_self() << endl;
}