| 1 | // ArchTOIPipe (C) CEA/DAPNIA/SPP IN2P3/LAL
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| 2 | // Eric Aubourg
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| 3 | // Christophe Magneville
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| 4 | // Reza Ansari
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| 5 |
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| 6 | /* Traitement simple des donnees Archeops KS1-3 - Reza Juin 2002
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| 7 |
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| 8 | ---------------- Exemple d'appel ---------------------
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| 9 | csh> aksj02 -start 104385384 -end 104399964 -range -500,500 \
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| 10 | -intoi boloMuV_26 -wtoi 8192 -wclean 512,5 \
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| 11 | inputbolo.fits filt.fits xx.ppf
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| 12 | */
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| 13 |
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| 14 |
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| 15 |
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| 16 | #include "machdefs.h"
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| 17 | #include <math.h>
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| 18 | #include <unistd.h>
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| 19 |
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| 20 | #include "toimanager.h"
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| 21 | #include "cgt.h"
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| 22 | #include "fitstoirdr.h"
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| 23 | #include "fitstoiwtr.h"
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| 24 | #include "simtoipr.h"
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| 25 | #include "simoffset.h"
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| 26 | #include "simcleaner.h"
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| 27 | #include "nooppr.h"
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| 28 | #include "timing.h"
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| 29 | #include "histinit.h"
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| 30 | #include "psighand.h"
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| 31 | #include <stdexcept>
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| 32 |
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| 33 | void Usage(bool fgerr)
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| 34 | {
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| 35 | cout << endl;
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| 36 | if (fgerr) {
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| 37 | cout << " aksj02 : Argument Error ! aksj02 -h for usage " << endl;
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| 38 | exit(1);
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| 39 | }
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| 40 | else {
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| 41 | cout << "\n Usage : aksj02 [-intoi toiname] [-start snb] [-end sne] \n"
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| 42 | << " [-dbg] [-wtoi sz] [-wclean wsz,nbw] [-range min,max] \n"
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| 43 | << " [-soff wsz,nptfit,degpol] [-soffnt PPFName] \n"
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| 44 | << " [-bgalcut bmin,bmax] [-bgal toiname] [-bgalfile pointFitsName] \n"
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| 45 | << " [-soff2 wsz,nptfit,degpol] [-soff2nt PPFName] \n"
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| 46 | << " [-bgal2cut bmin,bmax] \n"
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| 47 | << " [-gfilt wsz,sigma] \n"
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| 48 | << " [-nooutflg] [-wrtms] [-wrtifo] [-prstat] [-useseqbuff] \n"
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| 49 | << " inFitsName outFitsName \n"
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| 50 | << " -dbg : sets TOISeqBuffered debug level to 1 \n"
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| 51 | << " -start snb : sets the start sample num \n"
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| 52 | << " -end sne : sets the end sample num \n"
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| 53 | << " -range min,max : sets the acceptable range for intoi \n"
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| 54 | << " default= -16000,16000\n"
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| 55 | << " -intoi toiName : select input TOI name (def bolo)\n"
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| 56 | << " -wtoi sz : sets TOISeqBuff buffer size (def= 8192)\n"
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| 57 | << " -wclean wsz,nbw : sets cleaner window parameters (256,5) \n"
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| 58 | << " -soff wsz,nptfit,degpol : set SimpleOffsetEstimator parameters\n"
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| 59 | << " -soffnt PPFName : Writes out SimpleOffsetEstimator NTuple \n"
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| 60 | << " -bgalcut bmin,bmax: Galactic latitude cut (in degree) for SimpleOffsetEstimator\n"
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| 61 | << " -bgal toiname: Galactic latitude toiname \n"
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| 62 | << " -bgalfile pointFitsName: Pointing FITS file name (for gal. latitude) \n"
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| 63 | << " -soff2 wsz,nptfit,degpol : set SimpleOffsetEstimator_2 parameters\n"
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| 64 | << " -soff2nt PPFName : Writes out SimpleOffsetEstimator_2 NTuple \n"
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| 65 | << " -bgal2cut bmin,bmax: Galactic latitude cut (in degree) for SimpleOffsetEstimator_2\n"
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| 66 | << " -gfilt wsz,sigma : Activate gaussian filter (par= window size, sigma) \n"
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| 67 | // << " -wfft sz : Activate Fourier filter and sets its width \n"
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| 68 | // << " -keepfft n : Keeps n spectra (if Fourier filter activated) \n"
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| 69 | // << " -killfreq bf,nharm,sigf : kills nharm frequency, basefreq=bf \n"
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| 70 | // << " with a gaussian with width=sigf \n"
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| 71 | << " -nooutflg : Don't write flags to output FITS \n"
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| 72 | << " -wrtms : Write mean/sigma TOI's from cleaner \n"
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| 73 | << " -wrtifo : Write incopie flagged TOI's from cleaner/ offset from SimpleOffsetEstimator \n"
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| 74 | << " -prstat : PrintStat with ProcSampleCounter \n"
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| 75 | << " -useseqbuff : Use TOISeqBuffered TOI's (default: TOISegmented) \n"
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| 76 | << endl;
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| 77 | }
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| 78 | if (fgerr) exit(1);
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| 79 | }
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| 80 |
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| 81 | int main(int narg, char** arg) {
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| 82 |
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| 83 | if ((narg > 1) && (strcmp(arg[1],"-h") == 0) ) Usage(false);
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| 84 |
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| 85 | cout << "aksj02 starting - Decoding arguments " << " narg=" << narg << endl;
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| 86 |
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| 87 | bool fgdbg = false;
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| 88 | bool fgsetstart = false;
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| 89 |
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| 90 | bool fgprstat = false;
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| 91 | bool fgsegmented = true;
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| 92 |
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| 93 | int dbglev = 0;
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| 94 |
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| 95 | int wtoi = 8192;
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| 96 | int wdegli = 512;
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| 97 |
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| 98 | int wfft = 4096;
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| 99 | int keepfft = 0;
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| 100 | int nmax = 10;
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| 101 | int istart = 0;
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| 102 | int iend = 0;
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| 103 |
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| 104 | double range_min = -16000;
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| 105 | double range_max = 16000.;
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| 106 |
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| 107 | // cleaner parameters
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| 108 | double clean_wsz = 256;
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| 109 | double clean_nbw = 5;
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| 110 |
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| 111 | // SimpleOffsetEstimator parameters
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| 112 | int soff_mwsz = 256;
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| 113 | int soff_nptfit = 5;
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| 114 | int soff_degpol = 2;
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| 115 | bool soff_nt = false;
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| 116 | string soff_nt_ppfname = "";
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| 117 |
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| 118 | // SimpleOffsetEstimator (2) parameters
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| 119 | bool soff2_dofg = false;
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| 120 | int soff2_mwsz = 256;
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| 121 | int soff2_nptfit = 5;
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| 122 | int soff2_degpol = 2;
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| 123 | bool soff2_nt = false;
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| 124 | string soff2_nt_ppfname = "";
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| 125 |
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| 126 | // Gaussian filter parameters
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| 127 | bool gfilt_fg = false;
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| 128 | int gfilt_wsz = 16;
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| 129 | double gfilt_sigma = 2.;
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| 130 |
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| 131 | // Coordinate file for galactic cut
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| 132 | string pointfile = "pointgal.fits";
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| 133 | double bmin = -10;
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| 134 | double bmax = 10.;
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| 135 | bool bgalcut = false;
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| 136 | string bgaltoi = "bgal";
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| 137 | bool bgalfile = false;
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| 138 | double bmin2 = -10;
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| 139 | double bmax2 = 10.;
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| 140 | bool bgal2cut = false;
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| 141 |
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| 142 | // File names
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| 143 | string infile;
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| 144 | string outfile;
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| 145 | string outppfname;
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| 146 | string intoi = "bolo";
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| 147 |
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| 148 | bool fg_wrtflag = true;
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| 149 | bool fg_wrtms = false;
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| 150 | bool fg_wrtifo = false;
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| 151 |
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| 152 |
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| 153 | bool fg_f_filt = false;
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| 154 | bool fg_killfreq = false;
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| 155 | int bf_killfreq = 1;
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| 156 | int nharm_killfreq = 1;
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| 157 | double sigf_killfreq = 1.;
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| 158 |
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| 159 | if (narg < 4) Usage(true);
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| 160 | int ko=1;
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| 161 | // decoding arguments
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| 162 | for(int ia=1; ia<narg; ia++) {
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| 163 | if (strcmp(arg[ia],"-start") == 0) {
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| 164 | if (ia == narg-1) Usage(true); // -start est suivi d'un argument
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| 165 | istart = atoi(arg[ia+1]); ia++;
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| 166 | fgsetstart = true;
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| 167 | }
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| 168 | else if (strcmp(arg[ia],"-end") == 0) {
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| 169 | if (ia == narg-1) Usage(true);
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| 170 | iend = atoi(arg[ia+1]); ia++;
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| 171 | }
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| 172 | else if (strcmp(arg[ia],"-wtoi") == 0) {
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| 173 | if (ia == narg-1) Usage(true);
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| 174 | wtoi = atoi(arg[ia+1]); ia++;
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| 175 | }
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| 176 | else if (strcmp(arg[ia],"-wclean") == 0) {
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| 177 | if (ia == narg-1) Usage(true);
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| 178 | wdegli = atoi(arg[ia+1]); ia++;
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| 179 | sscanf(arg[ia+1],"%d,%d", &clean_wsz, &clean_nbw);
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| 180 | }
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| 181 | else if (strcmp(arg[ia],"-soff") == 0) {
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| 182 | if (ia == narg-1) Usage(true);
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| 183 | sscanf(arg[ia+1],"%d,%d,%d", &soff_mwsz, &soff_nptfit, &soff_degpol);
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| 184 | ia++;
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| 185 | }
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| 186 | else if (strcmp(arg[ia],"-soffnt") == 0) {
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| 187 | soff_nt = true;
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| 188 | soff_nt_ppfname = arg[ia+1]; ia++;
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| 189 | }
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| 190 | else if (strcmp(arg[ia],"-soff2") == 0) {
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| 191 | if (ia == narg-1) Usage(true);
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| 192 | soff2_dofg = true;
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| 193 | sscanf(arg[ia+1],"%d,%d,%d", &soff2_mwsz, &soff2_nptfit, &soff2_degpol);
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| 194 | ia++;
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| 195 | }
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| 196 | else if (strcmp(arg[ia],"-soff2nt") == 0) {
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| 197 | soff2_nt = true;
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| 198 | soff2_nt_ppfname = arg[ia+1]; ia++;
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| 199 | }
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| 200 | else if (strcmp(arg[ia],"-gfilt") == 0) {
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| 201 | if (ia == narg-1) Usage(true);
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| 202 | sscanf(arg[ia+1],"%d,%lf", &gfilt_wsz, &gfilt_sigma);
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| 203 | gfilt_fg = true;
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| 204 | ia++;
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| 205 | }
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| 206 | else if (strcmp(arg[ia],"-bgalcut") == 0) {
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| 207 | if (ia == narg-1) Usage(true);
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| 208 | sscanf(arg[ia+1],"%lf,%lf", &bmin, &bmax);
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| 209 | bgalcut = true;
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| 210 | ia++;
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| 211 | }
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| 212 | else if (strcmp(arg[ia],"-bgal2cut") == 0) {
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| 213 | if (ia == narg-1) Usage(true);
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| 214 | sscanf(arg[ia+1],"%lf,%lf", &bmin2, &bmax2);
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| 215 | bgal2cut = true;
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| 216 | ia++;
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| 217 | }
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| 218 | else if (strcmp(arg[ia],"-bgalfile") == 0) {
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| 219 | if (ia == narg-1) Usage(true);
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| 220 | pointfile = arg[ia+1];
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| 221 | bgalfile = true;
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| 222 | ia++;
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| 223 | }
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| 224 | else if (strcmp(arg[ia],"-bgal") == 0) {
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| 225 | if (ia == narg-1) Usage(true);
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| 226 | bgaltoi = arg[ia+1];
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| 227 | ia++;
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| 228 | }
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| 229 | else if (strcmp(arg[ia],"-range") == 0) {
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| 230 | if (ia == narg-1) Usage(true);
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| 231 | sscanf(arg[ia+1],"%lf,%lf",&range_min, &range_max);
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| 232 | ia++;
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| 233 | }
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| 234 | else if (strcmp(arg[ia],"-intoi") == 0) {
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| 235 | if (ia == narg-1) Usage(true);
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| 236 | intoi = arg[ia+1]; ia++;
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| 237 | }
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| 238 | else if (strcmp(arg[ia],"-dbg") == 0) fgdbg = true;
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| 239 | else if (strcmp(arg[ia],"-nooutflg") == 0) fg_wrtflag = false;
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| 240 | else if (strcmp(arg[ia],"-wrtms") == 0) fg_wrtms = true;
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| 241 | else if (strcmp(arg[ia],"-wrtifo") == 0) fg_wrtifo = true;
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| 242 |
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| 243 | else if (strcmp(arg[ia],"-prstat") == 0) fgprstat = true;
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| 244 | else if (strcmp(arg[ia],"-useseqbuff") == 0) fgsegmented = false;
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| 245 |
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| 246 | else { ko = ia; break; } // Debut des noms
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| 247 | }
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| 248 |
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| 249 | if (iend < istart) iend = istart+wtoi*(nmax+5);
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| 250 | if ((narg-ko) < 2) Usage(true);
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| 251 | infile = arg[ko];
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| 252 | outfile = arg[ko+1];
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| 253 | // outppfname = arg[ko+2];
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| 254 |
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| 255 | cout << " Initializing SOPHYA ... " << endl;
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| 256 | SophyaInit();
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| 257 | SophyaConfigureSignalhandling(true);
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| 258 |
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| 259 | InitTim();
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| 260 | if ((soff2_dofg == true) && (wtoi < 32768)) wtoi = 32768;
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| 261 | if (!bgalfile) bgalcut = bgal2cut = false;
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| 262 |
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| 263 | cout << ">>>> aksj02: Infile= " << infile << " outFile="
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| 264 | << outfile << endl;
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| 265 | cout << ">>>> Window Size WTOI= " << wtoi << " WDEGLI= " << wdegli
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| 266 | << " iStart= " << istart << " iEnd= " << iend << endl;
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| 267 | cout << ">>>> InTOIName= " << intoi << endl;
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| 268 |
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| 269 | try {
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| 270 | TOIManager* mgr = TOIManager::getManager();
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| 271 |
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| 272 | // mgr->setRequestedSample(11680920,11710584);
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| 273 | // mgr->setRequestedSample(104121000, 104946120);
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| 274 | if (fgsetstart)
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| 275 | mgr->setRequestedSample(istart, iend);
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| 276 |
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| 277 | cout << "> Creating FITSTOIReader object - InFile=" << infile << endl;
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| 278 | FITSTOIReader r(infile);
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| 279 |
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| 280 | cout << "> Creating SimpleCleaner() " << endl;
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| 281 | SimpleCleaner cleaner(clean_wsz, clean_nbw);
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| 282 | cout << " Setting Range for cleaner: " << range_min
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| 283 | << " - " << range_max << endl;
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| 284 | cleaner.SetRange(range_min, range_max);
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| 285 |
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| 286 | cout << "> Creating SimpleOffsetEstimator(" << soff_mwsz << "," << soff_nptfit
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| 287 | << "," << soff_degpol << ")" << endl;
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| 288 | SimpleOffsetEstimator offes(soff_mwsz, soff_nptfit, soff_degpol);
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| 289 | offes.SavePolyNTuple(soff_nt, soff_nt_ppfname);
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| 290 |
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| 291 | SimpleOffsetEstimator* offes2;
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| 292 | if (soff2_dofg) {
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| 293 | cout << "> Creating 2nd SimpleOffsetEstimator(" << soff2_mwsz << "," << soff2_nptfit
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| 294 | << "," << soff2_degpol << ")" << endl;
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| 295 | offes2 = new SimpleOffsetEstimator(soff2_mwsz, soff2_nptfit, soff2_degpol);
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| 296 | offes2->SavePolyNTuple(soff2_nt, soff2_nt_ppfname);
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| 297 | }
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| 298 |
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| 299 | SimpleFilter *filt = NULL;
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| 300 | if (gfilt_fg) {
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| 301 | cout << "> Creating a GaussianFilter SimpleFilter Object " << endl;
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| 302 | double G_sigma = gfilt_sigma;
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| 303 | double G_a = 1./(G_sigma*sqrt(M_PI*2.));
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| 304 | filt = new SimpleFilter(gfilt_wsz, SimpleFilter::GaussFilter, G_a, G_sigma);
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| 305 | }
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| 306 |
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| 307 | FITSTOIReader* rbgal = NULL;
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| 308 | if (bgalfile) { // if Galactic cut
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| 309 | cout << "> Creating bgal FITSTOIReader object - InFile=" << pointfile
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| 310 | << " bgaltoiname= " << bgaltoi << endl;
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| 311 | rbgal = new FITSTOIReader(pointfile);
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| 312 | }
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| 313 |
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| 314 | if (bgalfile && bgalcut) {
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| 315 | cout << " offes.SetBGalCut( " << bmin << "," << bmax << ")" << endl;
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| 316 | offes.SetBGalCut(bmin, bmax);
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| 317 | }
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| 318 | if (soff2_dofg && bgalfile && bgal2cut) {
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| 319 | cout << " offes2.SetBGalCut( " << bmin2 << "," << bmax2 << ")" << endl;
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| 320 | offes2->SetBGalCut(bmin, bmax);
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| 321 | }
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| 322 |
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| 323 | cout << "> Creating FITSTOIWriter OutFitsName= " << outfile << endl;
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| 324 | FITSTOIWriter w(outfile);
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| 325 |
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| 326 | CGT plombier(fgsegmented, wtoi);
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| 327 | plombier.SetDebugLevel(dbglev);
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| 328 |
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| 329 | cout << "> Connecting Processors through plombier ... " << endl;
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| 330 | string inname = "in";
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| 331 | string outname = "out";
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| 332 | plombier.Connect(r, intoi, cleaner, inname);
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| 333 | plombier.Connect(cleaner, "out", offes, "in");
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| 334 |
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| 335 | if (soff2_dofg && bgalcut && bgal2cut ) {
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| 336 | inname = "bgal";
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| 337 | outname = "bgalcopie";
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| 338 | plombier.Connect(*rbgal, bgaltoi, offes, inname);
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| 339 | plombier.Connect(offes, outname, *offes2, inname);
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| 340 | }
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| 341 | else if (soff2_dofg && bgal2cut) {
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| 342 | inname = "bgal";
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| 343 | plombier.Connect(*rbgal, bgaltoi, *offes2, inname);
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| 344 | }
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| 345 | else if (bgalcut) {
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| 346 | inname = "bgal";
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| 347 | plombier.Connect(*rbgal, bgaltoi, offes, inname);
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| 348 | }
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| 349 |
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| 350 | if (soff2_dofg) {
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| 351 | inname = "in";
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| 352 | outname = "out";
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| 353 | plombier.Connect(offes, outname, *offes2, inname);
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| 354 | if (bgalcut) {
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|---|
| 355 | inname = "bgal";
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|---|
| 356 | outname = "bgalcopie";
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|---|
| 357 | plombier.Connect(offes, outname, *offes2, inname);
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|---|
| 358 | }
|
|---|
| 359 | }
|
|---|
| 360 |
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|---|
| 361 | if (gfilt_fg) {
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|---|
| 362 | if (soff2_dofg)
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|---|
| 363 | plombier.Connect(*offes2, "out", *filt, "in");
|
|---|
| 364 | else
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|---|
| 365 | plombier.Connect(offes, "out", *filt, "in");
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|---|
| 366 | plombier.Connect(*filt, "out", w, "outfcln", "", 0, fg_wrtflag);
|
|---|
| 367 | }
|
|---|
| 368 | else {
|
|---|
| 369 | if (soff2_dofg)
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|---|
| 370 | plombier.Connect(*offes2, "out", w, "outcln", "", 0, fg_wrtflag);
|
|---|
| 371 | else
|
|---|
| 372 | plombier.Connect(offes, "out", w, "outcln", "", 0, fg_wrtflag);
|
|---|
| 373 | }
|
|---|
| 374 |
|
|---|
| 375 | if (fg_wrtifo) {
|
|---|
| 376 | plombier.Connect(offes, "incopie", w, "inflg", "", 0, fg_wrtflag);
|
|---|
| 377 | plombier.Connect(offes, "offset", w, "offset");
|
|---|
| 378 | if (soff2_dofg)
|
|---|
| 379 | plombier.Connect(*offes2, "offset", w, "offset2");
|
|---|
| 380 | }
|
|---|
| 381 | if (fg_wrtms) {
|
|---|
| 382 | plombier.Connect(cleaner, "mean", w, "mean");
|
|---|
| 383 | plombier.Connect(cleaner, "sigma", w, "sigma");
|
|---|
| 384 | }
|
|---|
| 385 |
|
|---|
| 386 | cout << "> Plombier status before start" << endl;
|
|---|
| 387 | cout << plombier ;
|
|---|
| 388 |
|
|---|
| 389 | cout << cleaner;
|
|---|
| 390 | cout << offes;
|
|---|
| 391 | if (soff2_dofg) cout << *offes2;
|
|---|
| 392 | cout << w;
|
|---|
| 393 |
|
|---|
| 394 | PrtTim("starting processors");
|
|---|
| 395 | plombier.Start();
|
|---|
| 396 |
|
|---|
| 397 |
|
|---|
| 398 | // ------------------- Impression continu de stat ------------------------
|
|---|
| 399 | if (fgprstat) {
|
|---|
| 400 | ProcSampleCounter<SimpleOffsetEstimator> stats(offes);
|
|---|
| 401 | stats.InfoMessage() = "aksj02/Info";
|
|---|
| 402 | stats.PrintStats();
|
|---|
| 403 | }
|
|---|
| 404 | // -----------------------------------------------------------------------
|
|---|
| 405 |
|
|---|
| 406 | cout << cleaner;
|
|---|
| 407 | cout << offes;
|
|---|
| 408 | if (soff2_dofg) cout << *offes2;
|
|---|
| 409 | if (gfilt_fg) cout << *filt;
|
|---|
| 410 | cout << w;
|
|---|
| 411 |
|
|---|
| 412 | mgr->joinAll();
|
|---|
| 413 | PrtTim("End threads");
|
|---|
| 414 | if (bgalcut) delete rbgal;
|
|---|
| 415 | if (gfilt_fg) delete filt;
|
|---|
| 416 | if (soff2_dofg) delete offes2;
|
|---|
| 417 | }
|
|---|
| 418 | catch (PThrowable & exc) {
|
|---|
| 419 | cerr << "\n aksj02: Catched Exception \n" << (string)typeid(exc).name()
|
|---|
| 420 | << " - Msg= " << exc.Msg() << endl;
|
|---|
| 421 | }
|
|---|
| 422 | catch (const std::exception & sex) {
|
|---|
| 423 | cerr << "\n aksj02: Catched std::exception \n"
|
|---|
| 424 | << (string)typeid(sex).name() << endl;
|
|---|
| 425 | }
|
|---|
| 426 | catch (...) {
|
|---|
| 427 | cerr << "\n aksj02: some other exception was caught ! " << endl;
|
|---|
| 428 | }
|
|---|
| 429 |
|
|---|
| 430 | return(0);
|
|---|
| 431 | }
|
|---|
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