| 1 | // ArchTOIPipe (C) CEA/DAPNIA/SPP IN2P3/LAL
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| 2 | // Eric Aubourg
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| 3 | // Christophe Magneville
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| 4 | // Reza Ansari
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| 5 |
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| 6 | /* Traitement simple des donnees Archeops KS1-3 - Reza Juin 2002
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| 7 |
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| 8 | ---------------- Exemple d'appel ---------------------
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| 9 | csh> aksj02 -start 104385384 -end 104399964 -range -500,500 \
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| 10 | -intoi boloMuV_26 -wtoi 8192 -wclean 512,5 \
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| 11 | inputbolo.fits filt.fits xx.ppf
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| 12 | */
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| 13 |
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| 14 |
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| 15 |
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| 16 | #include "machdefs.h"
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| 17 | #include <math.h>
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| 18 | #include <unistd.h>
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| 19 |
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| 20 | #include "toimanager.h"
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| 21 | #include "cgt.h"
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| 22 | #include "fitstoirdr.h"
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| 23 | #include "fitstoiwtr.h"
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| 24 | #include "simtoipr.h"
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| 25 | #include "simoffset.h"
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| 26 | #include "simcleaner.h"
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| 27 | #include "nooppr.h"
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| 28 | #include "timing.h"
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| 29 | #include "histinit.h"
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| 30 | #include "psighand.h"
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| 31 | #include <stdexcept>
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| 32 |
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| 33 | void Usage(bool fgerr)
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| 34 | {
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| 35 | cout << endl;
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| 36 | if (fgerr) {
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| 37 | cout << " aksj02 : Argument Error ! aksj02 -h for usage " << endl;
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| 38 | exit(1);
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| 39 | }
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| 40 | else {
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| 41 | cout << "\n Usage : aksj02 [-intoi toiname] [-start snb] [-end sne] \n"
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| 42 | << " [-dbg] [-wtoi sz] [-wclean wsz,nbw] [-range min,max] [-cleannsig nsig]\n"
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| 43 | << " [-soff wsz,nptfit,degpol] [-soffnt PPFName] \n"
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| 44 | << " [-soff2 wsz,nptfit,degpol] [-soff2nt PPFName] \n"
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| 45 | << " [-bgal toiname] [-bgalfile pointFitsName] [-bgalnf N]\n"
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| 46 | << " [-bgalcut bmin,bmax] [-bgal2cut bmin,bmax] \n"
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| 47 | << " [-gfilt wsz,sigma] \n"
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| 48 | << " [-nooutflg] [-wrtms] [-wrtifo] [-noprstat] [-useseqbuff] \n"
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| 49 | << " inFitsName outFitsName \n"
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| 50 | << " -dbg : sets TOISeqBuffered debug level to 1 \n"
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| 51 | << " -start snb : sets the start sample num \n"
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| 52 | << " -end sne : sets the end sample num \n"
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| 53 | << " -range min,max : sets the acceptable range for intoi \n"
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| 54 | << " default= -16000,16000\n"
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| 55 | << " -intoi toiName : select input TOI name (def bolo)\n"
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| 56 | << " -wtoi sz : sets TOISeqBuff buffer size (def= 8192)\n"
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| 57 | << " -wclean wsz,nbw : sets cleaner window parameters (256,5) \n"
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| 58 | << " -cleannsig nsig : Sets cleanner ThrNSig (default = 999999.) \n"
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| 59 | << " -soff wsz,nptfit,degpol : set SimpleOffsetEstimator parameters\n"
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| 60 | << " -soffnt PPFName : Writes out SimpleOffsetEstimator NTuple \n"
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| 61 | << " -bgalcut bmin,bmax: Galactic latitude cut (in degree) for SimpleOffsetEstimator\n"
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| 62 | << " -bgal toiname: Galactic latitude toiname \n"
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| 63 | << " -bgalfile pointFitsName: Pointing FITS file name (for gal. latitude) \n"
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| 64 | << " -bgalnf n: Number of bgalfiles pointFitsName%d.fits \n"
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| 65 | << " -soff2 wsz,nptfit,degpol : set SimpleOffsetEstimator_2 parameters\n"
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| 66 | << " -soff2nt PPFName : Writes out SimpleOffsetEstimator_2 NTuple \n"
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| 67 | << " -bgal2cut bmin,bmax: Galactic latitude cut (in degree) for SimpleOffsetEstimator_2\n"
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| 68 | << " -gfilt wsz,sigma : Activate gaussian filter (par= window size, sigma) \n"
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| 69 | // << " -wfft sz : Activate Fourier filter and sets its width \n"
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| 70 | // << " -keepfft n : Keeps n spectra (if Fourier filter activated) \n"
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| 71 | // << " -killfreq bf,nharm,sigf : kills nharm frequency, basefreq=bf \n"
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| 72 | // << " with a gaussian with width=sigf \n"
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| 73 | << " -nooutflg : Don't write flags to output FITS \n"
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| 74 | << " -wrtms : Write mean/sigma TOI's from cleaner \n"
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| 75 | << " -wrtifo : Write incopie flagged TOI's from cleaner/ offset from SimpleOffsetEstimator \n"
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| 76 | << " -noprstat : DO NOT PrintStat with ProcSampleCounter \n"
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| 77 | << " -useseqbuff : Use TOISeqBuffered TOI's (default: TOISegmented) \n"
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| 78 | << endl;
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| 79 | }
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| 80 | if (fgerr) exit(1);
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| 81 | }
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| 82 |
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| 83 | int main(int narg, char** arg) {
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| 84 |
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| 85 | if ((narg > 1) && (strcmp(arg[1],"-h") == 0) ) Usage(false);
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| 86 |
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| 87 | cout << "aksj02 starting - Decoding arguments " << " narg=" << narg << endl;
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| 88 |
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| 89 | bool fgdbg = false;
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| 90 | bool fgsetstart = false;
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| 91 |
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| 92 | bool fgprstat = true;
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| 93 | bool fgsegmented = true;
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| 94 |
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| 95 | int dbglev = 0;
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| 96 |
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| 97 | int wtoi = 8192;
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| 98 | int wdegli = 512;
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| 99 |
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| 100 | int nmax = 10;
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| 101 | int istart = 0;
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| 102 | int iend = 0;
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| 103 |
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| 104 | double range_min = -16000;
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| 105 | double range_max = 16000.;
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| 106 |
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| 107 | // cleaner parameters
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| 108 | int clean_wsz = 256;
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| 109 | int clean_nbw = 5;
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| 110 | double clean_nsig = 999999.;
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| 111 |
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| 112 | // SimpleOffsetEstimator parameters
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| 113 | int soff_mwsz = 256;
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| 114 | int soff_nptfit = 5;
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| 115 | int soff_degpol = 2;
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| 116 | bool soff_nt = false;
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| 117 | string soff_nt_ppfname = "";
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| 118 |
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| 119 | // SimpleOffsetEstimator (2) parameters
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| 120 | bool soff2_dofg = false;
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| 121 | int soff2_mwsz = 256;
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| 122 | int soff2_nptfit = 5;
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| 123 | int soff2_degpol = 2;
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| 124 | bool soff2_nt = false;
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| 125 | string soff2_nt_ppfname = "";
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| 126 |
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| 127 | // Gaussian filter parameters
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| 128 | bool gfilt_fg = false;
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| 129 | int gfilt_wsz = 16;
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| 130 | double gfilt_sigma = 2.;
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| 131 |
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| 132 | // Coordinate file for galactic cut
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| 133 | string pointfile = "pointgal.fits";
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| 134 | double bmin = -10;
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| 135 | double bmax = 10.;
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| 136 | bool bgalcut = false;
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| 137 | string bgaltoi = "bgal";
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| 138 | bool bgalfile = false;
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| 139 | double bmin2 = -10;
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| 140 | double bmax2 = 10.;
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| 141 | bool bgal2cut = false;
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| 142 | int bgalNbFiles = 0;
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| 143 |
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| 144 | // File names
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| 145 | string infile;
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| 146 | string outfile;
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| 147 | string outppfname;
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| 148 | string intoi = "bolo";
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| 149 |
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| 150 | bool fg_wrtflag = true;
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| 151 | bool fg_wrtms = false;
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| 152 | bool fg_wrtifo = false;
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| 153 |
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| 154 |
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| 155 | bool fg_f_filt = false;
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| 156 |
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| 157 | if (narg < 4) Usage(true);
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| 158 | int ko=1;
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| 159 | // decoding arguments
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| 160 | for(int ia=1; ia<narg; ia++) {
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| 161 | if (strcmp(arg[ia],"-start") == 0) {
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| 162 | if (ia == narg-1) Usage(true); // -start est suivi d'un argument
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| 163 | istart = atoi(arg[ia+1]); ia++;
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| 164 | fgsetstart = true;
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| 165 | }
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| 166 | else if (strcmp(arg[ia],"-end") == 0) {
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| 167 | if (ia == narg-1) Usage(true);
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| 168 | iend = atoi(arg[ia+1]); ia++;
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| 169 | }
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| 170 | else if (strcmp(arg[ia],"-wtoi") == 0) {
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| 171 | if (ia == narg-1) Usage(true);
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| 172 | wtoi = atoi(arg[ia+1]); ia++;
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| 173 | }
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| 174 | else if (strcmp(arg[ia],"-wclean") == 0) {
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| 175 | if (ia == narg-1) Usage(true);
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| 176 | wdegli = atoi(arg[ia+1]); ia++;
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| 177 | sscanf(arg[ia+1],"%d,%d", &clean_wsz, &clean_nbw);
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| 178 | }
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| 179 | else if (strcmp(arg[ia],"-cleannsig") == 0) {
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| 180 | if (ia == narg-1) Usage(true);
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| 181 | clean_nsig = atof(arg[ia+1]); ia++;
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| 182 | }
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| 183 | else if (strcmp(arg[ia],"-cleannsig") == 0) {
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| 184 | if (ia == narg-1) Usage(true);
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| 185 | clean_nsig = atof(arg[ia+1]); ia++;
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| 186 | }
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| 187 | else if (strcmp(arg[ia],"-soff") == 0) {
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| 188 | if (ia == narg-1) Usage(true);
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| 189 | sscanf(arg[ia+1],"%d,%d,%d", &soff_mwsz, &soff_nptfit, &soff_degpol);
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| 190 | ia++;
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| 191 | }
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| 192 | else if (strcmp(arg[ia],"-soffnt") == 0) {
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| 193 | soff_nt = true;
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| 194 | soff_nt_ppfname = arg[ia+1]; ia++;
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| 195 | }
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| 196 | else if (strcmp(arg[ia],"-soff2") == 0) {
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| 197 | if (ia == narg-1) Usage(true);
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| 198 | soff2_dofg = true;
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| 199 | sscanf(arg[ia+1],"%d,%d,%d", &soff2_mwsz, &soff2_nptfit, &soff2_degpol);
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| 200 | ia++;
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| 201 | }
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| 202 | else if (strcmp(arg[ia],"-soff2nt") == 0) {
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| 203 | soff2_nt = true;
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| 204 | soff2_nt_ppfname = arg[ia+1]; ia++;
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| 205 | }
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| 206 | else if (strcmp(arg[ia],"-gfilt") == 0) {
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| 207 | if (ia == narg-1) Usage(true);
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| 208 | sscanf(arg[ia+1],"%d,%lf", &gfilt_wsz, &gfilt_sigma);
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| 209 | gfilt_fg = true;
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| 210 | ia++;
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| 211 | }
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| 212 | else if (strcmp(arg[ia],"-bgalcut") == 0) {
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| 213 | if (ia == narg-1) Usage(true);
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| 214 | sscanf(arg[ia+1],"%lf,%lf", &bmin, &bmax);
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| 215 | bgalcut = true;
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| 216 | ia++;
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| 217 | }
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| 218 | else if (strcmp(arg[ia],"-bgal2cut") == 0) {
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| 219 | if (ia == narg-1) Usage(true);
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| 220 | sscanf(arg[ia+1],"%lf,%lf", &bmin2, &bmax2);
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| 221 | bgal2cut = true;
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| 222 | ia++;
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| 223 | }
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| 224 | else if (strcmp(arg[ia],"-bgalfile") == 0) {
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| 225 | if (ia == narg-1) Usage(true);
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| 226 | pointfile = arg[ia+1];
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| 227 | bgalfile = true;
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| 228 | ia++;
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| 229 | }
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| 230 | else if (strcmp(arg[ia],"-bgalnf") == 0) {
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| 231 | if (ia == narg-1) Usage(true);
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| 232 | bgalNbFiles = atoi(arg[ia+1]);
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| 233 | ia++;
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| 234 | }
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| 235 | else if (strcmp(arg[ia],"-bgal") == 0) {
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| 236 | if (ia == narg-1) Usage(true);
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| 237 | bgaltoi = arg[ia+1];
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| 238 | ia++;
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| 239 | }
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| 240 | else if (strcmp(arg[ia],"-range") == 0) {
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| 241 | if (ia == narg-1) Usage(true);
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| 242 | sscanf(arg[ia+1],"%lf,%lf",&range_min, &range_max);
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| 243 | ia++;
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| 244 | }
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| 245 | else if (strcmp(arg[ia],"-intoi") == 0) {
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| 246 | if (ia == narg-1) Usage(true);
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| 247 | intoi = arg[ia+1]; ia++;
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| 248 | }
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| 249 | else if (strcmp(arg[ia],"-dbg") == 0) fgdbg = true;
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| 250 | else if (strcmp(arg[ia],"-nooutflg") == 0) fg_wrtflag = false;
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| 251 | else if (strcmp(arg[ia],"-wrtms") == 0) fg_wrtms = true;
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| 252 | else if (strcmp(arg[ia],"-wrtifo") == 0) fg_wrtifo = true;
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| 253 |
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| 254 | else if (strcmp(arg[ia],"-prstat") == 0) fgprstat = true;
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| 255 | else if (strcmp(arg[ia],"-noprstat") == 0) fgprstat = false;
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| 256 | else if (strcmp(arg[ia],"-useseqbuff") == 0) fgsegmented = false;
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| 257 |
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| 258 | else { ko = ia; break; } // Debut des noms
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| 259 | }
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| 260 |
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| 261 | if (iend < istart) iend = istart+wtoi*(nmax+5);
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| 262 | if ((narg-ko) < 2) Usage(true);
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| 263 | infile = arg[ko];
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| 264 | outfile = arg[ko+1];
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| 265 | // outppfname = arg[ko+2];
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| 266 |
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| 267 | cout << " Initializing SOPHYA ... " << endl;
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| 268 | SophyaInit();
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| 269 | SophyaConfigureSignalhandling(true);
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| 270 |
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| 271 | InitTim();
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| 272 | if ((soff2_dofg == true) && (wtoi < 32768)) wtoi = 32768;
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| 273 | if (!bgalfile) bgalcut = bgal2cut = false;
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| 274 |
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| 275 | cout << ">>>> aksj02: Infile= " << infile << " outFile="
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| 276 | << outfile << endl;
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| 277 | cout << ">>>> Window Size WTOI= " << wtoi << " WDEGLI= " << wdegli
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| 278 | << " iStart= " << istart << " iEnd= " << iend << endl;
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| 279 | cout << ">>>> InTOIName= " << intoi << endl;
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| 280 |
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| 281 | try {
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| 282 | TOIManager* mgr = TOIManager::getManager();
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| 283 |
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| 284 | // mgr->setRequestedSample(11680920,11710584);
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| 285 | // mgr->setRequestedSample(104121000, 104946120);
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| 286 | if (fgsetstart)
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| 287 | mgr->setRequestedSample(istart, iend);
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| 288 |
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| 289 | cout << "> Creating FITSTOIReader object - InFile=" << infile << endl;
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| 290 | FITSTOIReader r(infile);
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| 291 |
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| 292 | cout << "> Creating SimpleCleaner() " << endl;
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| 293 | SimpleCleaner cleaner(clean_wsz, clean_nbw);
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| 294 | cout << " Setting Range for cleaner: " << range_min
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| 295 | << " - " << range_max << endl;
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| 296 | cleaner.SetRange(range_min, range_max);
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| 297 | cleaner.SetCleanForMeanThrNSig(clean_nsig);
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| 298 |
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| 299 | cout << "> Creating SimpleOffsetEstimator(" << soff_mwsz << "," << soff_nptfit
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| 300 | << "," << soff_degpol << ")" << endl;
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| 301 | SimpleOffsetEstimator offes(soff_mwsz, soff_nptfit, soff_degpol);
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| 302 | offes.SavePolyNTuple(soff_nt, soff_nt_ppfname);
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| 303 |
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| 304 | SimpleOffsetEstimator* offes2 = NULL;
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| 305 | if (soff2_dofg) {
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| 306 | cout << "> Creating 2nd SimpleOffsetEstimator(" << soff2_mwsz << "," << soff2_nptfit
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| 307 | << "," << soff2_degpol << ")" << endl;
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| 308 | offes2 = new SimpleOffsetEstimator(soff2_mwsz, soff2_nptfit, soff2_degpol);
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| 309 | offes2->SavePolyNTuple(soff2_nt, soff2_nt_ppfname);
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| 310 | }
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| 311 |
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| 312 | SimpleFilter *filt = NULL;
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| 313 | if (gfilt_fg) {
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| 314 | cout << "> Creating a GaussianFilter SimpleFilter Object " << endl;
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| 315 | double G_sigma = gfilt_sigma;
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| 316 | double G_a = 1./(G_sigma*sqrt(M_PI*2.));
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| 317 | filt = new SimpleFilter(gfilt_wsz, SimpleFilter::GaussFilter, G_a, G_sigma);
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| 318 | }
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| 319 |
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| 320 | FITSTOIReader* rbgal = NULL;
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| 321 | if (bgalfile) { // if Galactic cut
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| 322 | string pointfileI = pointfile;
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| 323 | MuTyV numf=0;
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| 324 | if(bgalNbFiles > 0) {
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| 325 | pointfileI += (string)numf + ".fits";
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| 326 | }
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| 327 | cout << "> Creating bgal FITSTOIReader object - InFile=" << pointfileI
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| 328 | << " bgaltoiname= " << bgaltoi << endl;
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| 329 | rbgal = new FITSTOIReader(pointfileI);
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| 330 | if(bgalNbFiles > 0)
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| 331 | for(int kff=1; kff<bgalNbFiles; kff++) {
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| 332 | numf=kff;
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| 333 | pointfileI = pointfile;
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| 334 | pointfileI += (string)numf + ".fits";
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| 335 | cout << " bgal FITSTOIReader.addFile( " << pointfileI << " )" << endl;
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| 336 | rbgal->addFile( pointfileI );
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| 337 | }
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| 338 |
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| 339 | }
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| 340 |
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| 341 | if (bgalfile && bgalcut) {
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| 342 | cout << " offes.SetBGalCut( " << bmin << "," << bmax << ")" << endl;
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| 343 | offes.SetBGalCut(bmin, bmax);
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| 344 | }
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| 345 | if (soff2_dofg && bgalfile && bgal2cut) {
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| 346 | cout << " offes2.SetBGalCut( " << bmin2 << "," << bmax2 << ")" << endl;
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| 347 | offes2->SetBGalCut(bmin, bmax);
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| 348 | }
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| 349 |
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| 350 | cout << "> Creating FITSTOIWriter OutFitsName= " << outfile << endl;
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| 351 | FITSTOIWriter w(outfile);
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| 352 |
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| 353 | CGT plombier(fgsegmented, wtoi);
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| 354 | plombier.SetDebugLevel(dbglev);
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| 355 |
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| 356 | cout << "> Connecting Processors through plombier ... " << endl;
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| 357 | string inname = "in";
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| 358 | string outname = "out";
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| 359 | plombier.Connect(r, intoi, cleaner, inname);
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| 360 | plombier.Connect(cleaner, "out", offes, "in");
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| 361 |
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| 362 | if (soff2_dofg && bgalcut && bgal2cut ) {
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| 363 | inname = "bgal";
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| 364 | outname = "bgalcopie";
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| 365 | plombier.Connect(*rbgal, bgaltoi, offes, inname);
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|---|
| 366 | plombier.Connect(offes, outname, *offes2, inname);
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|---|
| 367 | }
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|---|
| 368 | else if (soff2_dofg && bgal2cut) {
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| 369 | inname = "bgal";
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|---|
| 370 | plombier.Connect(*rbgal, bgaltoi, *offes2, inname);
|
|---|
| 371 | }
|
|---|
| 372 | else if (bgalcut) {
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|---|
| 373 | inname = "bgal";
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|---|
| 374 | plombier.Connect(*rbgal, bgaltoi, offes, inname);
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|---|
| 375 | }
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|---|
| 376 |
|
|---|
| 377 | if (soff2_dofg) {
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|---|
| 378 | inname = "in";
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|---|
| 379 | outname = "out";
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|---|
| 380 | plombier.Connect(offes, outname, *offes2, inname);
|
|---|
| 381 | }
|
|---|
| 382 |
|
|---|
| 383 | if (gfilt_fg) {
|
|---|
| 384 | if (soff2_dofg)
|
|---|
| 385 | plombier.Connect(*offes2, "out", *filt, "in");
|
|---|
| 386 | else
|
|---|
| 387 | plombier.Connect(offes, "out", *filt, "in");
|
|---|
| 388 | plombier.Connect(*filt, "out", w, "outfcln", "", 0, fg_wrtflag);
|
|---|
| 389 | }
|
|---|
| 390 | else {
|
|---|
| 391 | if (soff2_dofg)
|
|---|
| 392 | plombier.Connect(*offes2, "out", w, "outcln", "", 0, fg_wrtflag);
|
|---|
| 393 | else
|
|---|
| 394 | plombier.Connect(offes, "out", w, "outcln", "", 0, fg_wrtflag);
|
|---|
| 395 | }
|
|---|
| 396 |
|
|---|
| 397 | if (fg_wrtifo) {
|
|---|
| 398 | plombier.Connect(offes, "incopie", w, "inflg", "", 1.5*wtoi, fg_wrtflag);
|
|---|
| 399 | plombier.Connect(offes, "offset", w, "offset", "", 1.5*wtoi);
|
|---|
| 400 | if (soff2_dofg)
|
|---|
| 401 | plombier.Connect(*offes2, "offset", w, "offset2", "", 2*wtoi);
|
|---|
| 402 | }
|
|---|
| 403 | if (fg_wrtms) {
|
|---|
| 404 | plombier.Connect(cleaner, "mean", w, "mean", "", 3*wtoi);
|
|---|
| 405 | plombier.Connect(cleaner, "sigma", w, "sigma", "", 3*wtoi);
|
|---|
| 406 | }
|
|---|
| 407 |
|
|---|
| 408 | cout << "> Plombier status before start" << endl;
|
|---|
| 409 | cout << plombier ;
|
|---|
| 410 |
|
|---|
| 411 | cout << cleaner;
|
|---|
| 412 | cout << offes;
|
|---|
| 413 | if (soff2_dofg) cout << *offes2;
|
|---|
| 414 | cout << w;
|
|---|
| 415 |
|
|---|
| 416 | PrtTim("starting processors");
|
|---|
| 417 | plombier.Start();
|
|---|
| 418 |
|
|---|
| 419 |
|
|---|
| 420 | // ------------------- Impression continu de stat ------------------------
|
|---|
| 421 | if (fgprstat) {
|
|---|
| 422 | ProcSampleCounter<SimpleOffsetEstimator> stats(offes);
|
|---|
| 423 | stats.InfoMessage() = "aksj02/Info";
|
|---|
| 424 | stats.PrintStats();
|
|---|
| 425 | }
|
|---|
| 426 | // -----------------------------------------------------------------------
|
|---|
| 427 |
|
|---|
| 428 | cout << cleaner;
|
|---|
| 429 | cout << offes;
|
|---|
| 430 | if (soff2_dofg) cout << *offes2;
|
|---|
| 431 | if (gfilt_fg) cout << *filt;
|
|---|
| 432 | cout << w;
|
|---|
| 433 |
|
|---|
| 434 | mgr->joinAll();
|
|---|
| 435 | PrtTim("End threads");
|
|---|
| 436 | if (bgalcut) delete rbgal;
|
|---|
| 437 | if (gfilt_fg) delete filt;
|
|---|
| 438 | if (soff2_dofg) delete offes2;
|
|---|
| 439 | }
|
|---|
| 440 | catch (PThrowable & exc) {
|
|---|
| 441 | cerr << "\n aksj02: Catched Exception \n" << (string)typeid(exc).name()
|
|---|
| 442 | << " - Msg= " << exc.Msg() << endl;
|
|---|
| 443 | }
|
|---|
| 444 | catch (const std::exception & sex) {
|
|---|
| 445 | cerr << "\n aksj02: Catched std::exception \n"
|
|---|
| 446 | << (string)typeid(sex).name() << endl;
|
|---|
| 447 | }
|
|---|
| 448 | catch (...) {
|
|---|
| 449 | cerr << "\n aksj02: some other exception was caught ! " << endl;
|
|---|
| 450 | }
|
|---|
| 451 |
|
|---|
| 452 | return(0);
|
|---|
| 453 | }
|
|---|
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