| 1 | // ArchTOIPipe (C) CEA/DAPNIA/SPP IN2P3/LAL
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| 2 | // Eric Aubourg
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| 3 | // Christophe Magneville
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| 4 | // Reza Ansari
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| 5 |
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| 6 | /* Calcul de statistique simples sur TOI
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| 7 |
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| 8 | ---------------- Exemple d'appel ---------------------
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| 9 | csh> toistat -start 104385384 -end 104399964 -range -500,500 \
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| 10 | -intoi boloMuV_26 -wtoi 8192 -wclean 512,5 \
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| 11 | inputbolo.fits filt.fits xx.ppf
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| 12 | */
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| 13 |
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| 14 |
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| 15 |
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| 16 | #include "machdefs.h"
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| 17 | #include <math.h>
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| 18 | #include <unistd.h>
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| 19 |
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| 20 | #include "toimanager.h"
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| 21 | #include "cgt.h"
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| 22 | #include "fitstoirdr.h"
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| 23 | #include "fitstoiwtr.h"
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| 24 | #include "simtoipr.h"
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| 25 | #include "simoffset.h"
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| 26 | #include "simcleaner.h"
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| 27 | #include "nooppr.h"
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| 28 | #include "timing.h"
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| 29 | #include "histinit.h"
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| 30 | #include "ntuple.h"
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| 31 | #include "fitsntuple.h"
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| 32 |
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| 33 | #include "psighand.h"
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| 34 | #include <stdexcept>
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| 35 |
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| 36 | void Usage(bool fgerr)
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| 37 | {
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| 38 | cout << endl;
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| 39 | if (fgerr) {
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| 40 | cout << " toistat : Argument Error ! toistat -h for usage " << endl;
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| 41 | exit(1);
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| 42 | }
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| 43 | else {
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| 44 | cout << " toistat : produce a stat NTuple (mean,sigma) from a TOI" << endl;
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| 45 | cout << "\n Usage : toistat [-intoi toiname] [-flag mask] \n "
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| 46 | << " [-start snb] [-end sne] [-snimplicit] \n"
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| 47 | << " [-wtoi sz] [-wclean wsz,nbw] [-range min,max] [-cleannsig nsig] \n"
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| 48 | << " [-outppf] [-noprstat] [-useseqbuff] \n"
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| 49 | << " [-sepflg sepFlagFile] inFitsName outFileName \n"
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| 50 | << " -start snb : sets the start sample num \n"
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| 51 | << " -end sne : sets the end sample num \n"
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| 52 | << " -snimplicit : sampleNum are implicit in fits files (def=no) \n"
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| 53 | << " -range min,max : sets the acceptable range for intoi \n"
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| 54 | << " default= -16000,16000\n"
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| 55 | << " -intoi toiName : select input TOI name (def bolo)\n"
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| 56 | << " -flag mask : set TOI flag mask (def = 0 - no flag) \n"
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| 57 | << " -sepflg sepFlagFileName: sets separate flag file (Level2)\n"
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| 58 | << " -wtoi sz : sets TOISeqBuff buffer size (def= 8192)\n"
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| 59 | << " -wclean wsz,nbw : sets cleaner window parameters (256,5) \n"
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| 60 | << " -cleannsig nsig : Sets cleanner ThrNSig (default = 999999.) \n"
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| 61 | << " -outppf : Write the NTuple in PPF format (default: FITS) \n"
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| 62 | << " -noprstat : DO NOT PrintStat with ProcSampleCounter \n"
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| 63 | << " -useseqbuff : Use TOISeqBuffered TOI's (default: TOISegmented) \n"
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| 64 | << endl;
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| 65 | }
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| 66 | if (fgerr) exit(1);
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| 67 | }
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| 68 |
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| 69 | int main(int narg, char** arg) {
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| 70 |
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| 71 | if ((narg > 1) && (strcmp(arg[1],"-h") == 0) ) Usage(false);
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| 72 |
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| 73 | cout << "toistat starting - Decoding arguments " << " narg=" << narg << endl;
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| 74 |
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| 75 | bool fgsetstart = false;
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| 76 |
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| 77 | bool fgprstat = true;
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| 78 | bool fgsegmented = true;
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| 79 | bool fgoutppf = false;
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| 80 | bool snimplicit = false;
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| 81 |
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| 82 | bool fgmask = false;
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| 83 | uint_8 flagmask = 0;
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| 84 |
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| 85 | int dbglev = 0;
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| 86 |
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| 87 | int wtoi = 8192;
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| 88 |
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| 89 | int nmax = 10;
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| 90 | int istart = 0;
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| 91 | int iend = 0;
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| 92 |
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| 93 | double range_min = -16000;
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| 94 | double range_max = 16000.;
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| 95 |
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| 96 | // cleaner parameters
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| 97 | int clean_wsz = 256;
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| 98 | int clean_nbw = 5;
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| 99 | double clean_nsig = 999999.;
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| 100 |
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| 101 | // Fichier de flag separe / Level2 / Reza 18/6/2002
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| 102 | string sepflagfile;
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| 103 | bool sepflg = false;
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| 104 |
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| 105 | // File names
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| 106 | string infile;
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| 107 | string outfile;
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| 108 | string intoi = "bolo";
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| 109 |
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| 110 | if (narg < 3) Usage(true);
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| 111 | int ko=1;
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| 112 | // decoding arguments
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| 113 | for(int ia=1; ia<narg; ia++) {
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| 114 | if (strcmp(arg[ia],"-start") == 0) {
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| 115 | if (ia == narg-1) Usage(true); // -start est suivi d'un argument
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| 116 | istart = atoi(arg[ia+1]); ia++;
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| 117 | fgsetstart = true;
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| 118 | }
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| 119 | else if (strcmp(arg[ia],"-end") == 0) {
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| 120 | if (ia == narg-1) Usage(true);
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| 121 | iend = atoi(arg[ia+1]); ia++;
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| 122 | }
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| 123 | else if (strcmp(arg[ia],"-snimplicit") == 0) snimplicit = true;
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| 124 | else if (strcmp(arg[ia],"-wtoi") == 0) {
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| 125 | if (ia == narg-1) Usage(true);
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| 126 | wtoi = atoi(arg[ia+1]); ia++;
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| 127 | }
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| 128 | else if (strcmp(arg[ia],"-wclean") == 0) {
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| 129 | if (ia == narg-1) Usage(true);
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| 130 | sscanf(arg[ia+1],"%d,%d", &clean_wsz, &clean_nbw); ia++;
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| 131 | }
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| 132 | else if (strcmp(arg[ia],"-cleannsig") == 0) {
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| 133 | if (ia == narg-1) Usage(true);
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| 134 | clean_nsig = atof(arg[ia+1]); ia++;
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| 135 | }
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| 136 | else if (strcmp(arg[ia],"-range") == 0) {
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| 137 | if (ia == narg-1) Usage(true);
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| 138 | sscanf(arg[ia+1],"%lf,%lf",&range_min, &range_max);
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| 139 | ia++;
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| 140 | }
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| 141 | else if (strcmp(arg[ia],"-intoi") == 0) {
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| 142 | if (ia == narg-1) Usage(true);
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| 143 | intoi = arg[ia+1]; ia++;
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| 144 | }
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| 145 | else if (strcmp(arg[ia],"-flag") == 0) {
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| 146 | if (ia == narg-1) Usage(true);
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| 147 | flagmask = atol(arg[ia+1]);
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| 148 | fgmask = true; ia++;
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| 149 | }
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| 150 | else if (strcmp(arg[ia],"-sepflg") == 0) {
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| 151 | if (ia == narg-1) Usage(true);
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| 152 | sepflagfile = arg[ia+1];
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| 153 | sepflg = true; ia++;
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| 154 | }
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| 155 | else if (strcmp(arg[ia],"-outppf") == 0) fgoutppf = true;
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| 156 |
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| 157 | else if (strcmp(arg[ia],"-noprstat") == 0) fgprstat = false;
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| 158 | else if (strcmp(arg[ia],"-prstat") == 0) fgprstat = true;
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| 159 | else if (strcmp(arg[ia],"-useseqbuff") == 0) fgsegmented = false;
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| 160 |
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| 161 | else { ko = ia; break; } // Debut des noms
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| 162 | }
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| 163 |
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| 164 | if (iend < istart) iend = istart+wtoi*(nmax+5);
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| 165 | if ((narg-ko) < 2) Usage(true);
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| 166 | infile = arg[ko];
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| 167 | outfile = arg[ko+1];
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| 168 | // outppfname = arg[ko+2];
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| 169 |
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| 170 | cout << " Initializing SOPHYA ... " << endl;
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| 171 | SophyaInit();
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| 172 | // SophyaConfigureSignalhandling(true);
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| 173 |
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| 174 | InitTim();
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| 175 |
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| 176 | cout << ">>>> toistat: Infile= " << infile << " outFile="
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| 177 | << outfile << endl;
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| 178 | cout << " iStart= " << istart << " iEnd= " << iend << endl;
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| 179 | cout << ">>>> InTOIName= " << intoi << endl;
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| 180 |
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| 181 | try {
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| 182 | TOIManager* mgr = TOIManager::getManager();
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| 183 |
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| 184 | // mgr->setRequestedSample(11680920,11710584);
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| 185 | // mgr->setRequestedSample(104121000, 104946120);
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| 186 | if (fgsetstart)
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| 187 | mgr->setRequestedSample(istart, iend);
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| 188 |
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| 189 | cout << "> Creating FITSTOIReader object - InFile=" << infile << endl;
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| 190 | FITSTOIReader r(infile);
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| 191 | if (snimplicit) {
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| 192 | cout << " Setting Implicit SN flag for reader: r.setImplicitSN()" << endl;
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| 193 | r.setImplicitSN();
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| 194 | }
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| 195 | if (sepflg) {
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| 196 | cout << " Setting separate flag file for InTOI_bolo File=" << sepflagfile
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| 197 | << " (Flags=FlgToiSpike, FlgToiSource)" << endl;
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| 198 | vector<FlagToiDef> flgcol;
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| 199 | flgcol.push_back(FlgToiSpike);
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| 200 | flgcol.push_back(FlgToiSource);
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| 201 | r.setFlagFile(sepflagfile, flgcol);
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| 202 | }
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| 203 |
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| 204 | cout << "> Creating SimpleCleaner() " << endl;
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| 205 | SimpleCleaner cleaner(clean_wsz, clean_nbw);
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| 206 | cout << " Setting Range for cleaner: " << range_min
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| 207 | << " - " << range_max << endl;
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| 208 | cleaner.SetRange(range_min, range_max);
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| 209 | cleaner.SetCleanForMeanThrNSig(clean_nsig);
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| 210 | if (fgmask) {
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| 211 | cout << " Setting FlagMask: cleaner.SetFlagMask( " << hex
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| 212 | << flagmask << dec << "/" << flagmask << " ) " << endl;
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| 213 | cleaner.SetFlagMask(flagmask);
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| 214 | }
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| 215 | cleaner.FillMeanSigNTuple(true);
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| 216 |
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| 217 | CGT plombier(fgsegmented, wtoi);
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| 218 | // plombier.SetDebugLevel(dbglev);
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| 219 |
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| 220 | cout << "> Connecting Processors through plombier ... " << endl;
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| 221 | string inname = "in";
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| 222 | string outname = "out";
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| 223 | plombier.Connect(r, intoi, cleaner, inname);
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| 224 |
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| 225 | cout << "> Plombier status before start" << endl;
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| 226 | cout << plombier ;
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| 227 |
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| 228 | cout << cleaner;
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| 229 |
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| 230 | PrtTim("starting processors");
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| 231 | mgr->startAll();
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| 232 | // plombier.Start();
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| 233 |
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| 234 |
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| 235 | // ------------------- Impression continu de stat ------------------------
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| 236 | if (fgprstat) {
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| 237 | ProcSampleCounter<SimpleCleaner> stats(cleaner);
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| 238 | stats.InfoMessage() = "toistat/Info";
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| 239 | stats.PrintStats();
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| 240 | }
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| 241 | // -----------------------------------------------------------------------
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| 242 |
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| 243 | mgr->waitForAll();
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| 244 | PrtTim("End threads");
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| 245 |
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| 246 | cout << cleaner;
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| 247 |
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| 248 | cleaner.GetMeanSigNTuple().Info()["TOIFILE"] = infile;
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| 249 | cleaner.GetMeanSigNTuple().Info()["TOINAME"] = intoi;
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| 250 |
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| 251 | if (fgoutppf) {
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| 252 | cout << " \n --------------------------------------------------------- " << endl;
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| 253 | cout << " Saving Stats (mean-sigma) NTuple to PPF file " << outfile << endl;
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| 254 | POutPersist pos(outfile);
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| 255 | pos << cleaner.GetMeanSigNTuple();
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| 256 | cout << " \n --------------------------------------------------------- " << endl;
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| 257 | }
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| 258 | else {
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| 259 | cout << " \n --------------------------------------------------------- " << endl;
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| 260 | cout << " Saving Stats (mean-sigma NTuple to FITS file " << outfile << endl;
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| 261 | FitsOutFile fos(outfile, FitsFile::clear);
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| 262 | fos << cleaner.GetMeanSigNTuple();
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| 263 | cout << " \n --------------------------------------------------------- " << endl;
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| 264 | }
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| 265 | }
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| 266 | catch (PThrowable & exc) {
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| 267 | cerr << "\n toistat: Catched Exception \n" << (string)typeid(exc).name()
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| 268 | << " - Msg= " << exc.Msg() << endl;
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| 269 | }
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| 270 | catch (const std::exception & sex) {
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| 271 | cerr << "\n toistat: Catched std::exception \n"
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| 272 | << (string)typeid(sex).name() << endl;
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| 273 | }
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| 274 | catch (...) {
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| 275 | cerr << "\n toistat: some other exception was caught ! " << endl;
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| 276 | }
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| 277 |
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| 278 | return(0);
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| 279 | }
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