1 | #include "sopnamsp.h"
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2 | #include "machdefs.h"
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3 | #include <iostream>
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4 | #include <stdlib.h>
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5 | #include <stdio.h>
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6 | #include <string.h>
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7 | #include <math.h>
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8 | #include <unistd.h>
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9 | #include "timing.h"
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10 | #include "ntuple.h"
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11 | #include "matharr.h"
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12 |
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13 | #include "constcosmo.h"
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14 | #include "cosmocalc.h"
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15 | #include "schechter.h"
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16 | #include "geneutils.h"
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17 | #include "genefluct3d.h"
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18 |
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19 | void usage(void);
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20 | void usage(void)
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21 | {
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22 | cout<<"cmvobserv3d [...options...]"<<endl
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23 | <<" -a : auto init random seed (needed for multiple simul)"<<endl
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24 | <<" -0 : use ComputeFourier0 method (defaut: no, use normal way)"<<endl
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25 | <<" -G typevol: compute Pk(z=0) and apply growth factor in real space"<<endl
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26 | <<" typevol=1 evolved with distance / observateur (def)"<<endl
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27 | <<" typevol=2 evolved with distance to middle of Z planes"<<endl
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28 | <<" else : no evol, spectrum Pk(z=z_median) for all cube (def)"<<endl
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29 | <<" -F : filter spectrum by pixel shape (0=no 1=yes(default)"<<endl
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30 | <<" -U typ =0 compute <NGal>, poisson fluctuate then convert to HI mass (def)"<<endl
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31 | <<" >0 compute directly <HI mass>, do NOT poisson fluctuate with <Ngal>"<<endl
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32 | <<" <0 just multiply dRho/Rho by mass_by_pixel (possible negative pixel values)"<<endl
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33 | <<" -x nx,dx : size along x axis (npix,Mpc)"<<endl
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34 | <<" -y ny,dy : size along y axis (npix,Mpc)"<<endl
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35 | <<" if ny or dy <=0 take same value as for x"<<endl
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36 | <<" -z nz,dz : size along z axis (redshift axis, npix,Mpc)"<<endl
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37 | <<" -Z zref : redshift for the center of the simulation cube"<<endl
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38 | <<" -s snoise,typevol : gaussian noise sigma in equivalent Msol"<<endl
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39 | <<" typevol=0 no evolution (def)"<<endl
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40 | <<" typevol=1 noise evolved with distance / observateur"<<endl
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41 | <<" typevol=2 noise evolved with distance to middle of Z planes"<<endl
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42 | <<" -2 : compute also 2D spectrum (default: no)"<<endl
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43 | <<" -N scalemass: facteur d\'unite pour la masse (default: -1)"<<endl
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44 | <<" ex: si on veut unites 10^8 Msol -> scalemass=1.e-8"<<endl
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45 | <<" si <0 alors facteur=-scalemass*Mpix"<<endl
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46 | <<" -M schmin,schmax,nsch : min,max mass and nb points for schechter HI"<<endl
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47 | <<" If nsch<0 alors no,bre de points par decade"<<endl
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48 | <<" -Q naleagal : use quick method for turning ngal to mass"<<endl
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49 | <<" -R schmassdist.ppf : read mass distribution for trials from file"<<endl
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50 | <<" instead of computing it (ONLY if \"-Q\" option is activated)"<<endl
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51 | <<" -8 sigmaR,R : normalisation du spectre de puissance, R en Mpc"<<endl
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52 | <<" (default sigmaR=1, R=8/h100 Mpc)"<<endl
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53 | <<" -W : write cube in FITS format (complex cube is coded as real cube)"<<endl
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54 | <<" -P : write cube in PPF format"<<endl
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55 | <<" -O a,b,c,d,e : tell what you want to write (with the -W and -P options)"<<endl
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56 | <<" a=1 : write generated fourier cube (_k0)"<<endl
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57 | <<" b=1 : write real space cube dRho/Rho at z (_r0)"<<endl
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58 | <<" c=1 : write real space cube conv to gal,poiss,mass etc... (_r)"<<endl
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59 | <<" d=1 : write previous real space cube + noise (_rf)"<<endl
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60 | <<" e=1 : write fourier transform of previous cube (_k)"<<endl
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61 | <<" -S : write cube slices in PPF format"<<endl
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62 | <<" -o root_name_out : root string for output file name (def: cmvobserv3d)"<<endl
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63 | <<" -V : compute variance from real space (for check, default: no)"<<endl
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64 | <<" -T nth : nombre de threads (si compil multi-thread, default: 0)"<<endl
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65 | <<endl;
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66 | ////<<" -A <log10(S_agn in Jy at 1.4 GHz)>,sigma,powlaw :"<<endl
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67 | ////<<" AGN mean and sigma gaussian equiv. distrib. for solid angle of centeral pixel"<<endl
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68 | ////<<" powlaw: apply S_agn evolution as (Nu/1.4)^powlaw"<<endl
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69 | }
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70 |
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71 | int main(int narg,char *arg[])
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72 | {
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73 | InitTim();
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74 |
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75 | //-----------------------------------------------------------------
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76 | // *** Survey definition
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77 | long nx=360, ny=-1, nz=64; double dx=1., dy=-1., dz=-1.;
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78 | //long nx=1000, ny=-1, nz=128; double dx=3., dy=-1., dz=6.;
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79 | //long nx=1200, ny=-1, nz=128; double dx=1., dy=-1., dz=3;
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80 |
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81 | // *** Cosmography definition (WMAP)
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82 | unsigned short flat = 0;
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83 | double ob0 = 0.0444356;
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84 | double h100=0.71, om0=0.267804, or0=7.9e-05, ol0=0.73,w0=-1.;
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85 | double zref = 0.5;
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86 | double perc=0.01,dzinc=-1.,dzmax=-1.; unsigned short glorder=4;
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87 |
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88 | // *** Spectrum and variance definition
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89 | double ns = 1., as = 1.;
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90 | double R=8./h100, Rg=R/sqrt(5.);
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91 | double sigmaR = 1.;
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92 |
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93 | double kmin=1e-5,kmax=1000.;
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94 | int npt = 10000;
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95 | double lkmin=log10(kmin), lkmax=log10(kmax);
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96 | double eps=1.e-3;
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97 |
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98 | // *** Schechter mass function definition
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99 | double h75 = h100 / 0.75;
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100 | double nstar = 0.006*pow(h75,3.);
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101 | double mstar = pow(10.,9.8); // MSol
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102 | double alpha = -1.37;
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103 |
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104 | double schmin=1.e7, schmax=1.e13;
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105 | int schnpt = -100;
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106 | bool use_schmassdist = false;
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107 | long naleagal = 100000;
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108 | bool recompute_schmassdist = true;
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109 | string schmassdistfile = "";
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110 | int no_poisson_type = 0;
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111 |
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112 | double scalemass = -1.;
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113 |
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114 | // *** Niveau de bruit
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115 | double snoise= 0.; // en equivalent MSol
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116 | int noise_evol = 0;
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117 |
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118 | //// *** AGN
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119 | ////bool do_agn = false;
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120 | ////double lfjy_agn=-99., lsigma_agn=0.; // en Jy
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121 | ////double powlaw_agn = 0.;
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122 |
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123 | // *** type de generation
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124 | bool computefourier0=false;
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125 | int use_growth_factor = 0;
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126 | unsigned short nthread=0;
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127 | int filter_by_pixel = 1;
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128 |
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129 | // *** What to do
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130 | bool comp2dspec = false;
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131 | bool wfits = false;
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132 | bool wppf = false;
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133 | bool wslice = false;
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134 | bool compvarreal = false;
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135 | unsigned short whattowrt[5] = {1,1,1,1,1};
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136 | string rootnameout = "cmvobserv3d";
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137 |
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138 | unsigned long ntnent = 10000; // 0 = do not fill NTuple
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139 |
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140 | // --- Decodage arguments
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141 | if(narg>0) {
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142 | cout<<"\n--- Arguments: "<<endl;
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143 | for(int i=0;i<narg;i++) cout<<arg[i]<<" ";
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144 | cout<<endl;
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145 | }
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146 | system("date -u");
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147 |
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148 | char c;
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149 | while((c = getopt(narg,arg,"ha0PWSV2U:G:F:x:y:z:s:Z:M:A:T:N:Q:R:8:O:o:")) != -1) {
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150 | int nth = 0;
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151 | switch (c) {
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152 | case 'a' :
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153 | Auto_Ini_Ranf(5);
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154 | break;
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155 | case '0' :
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156 | computefourier0 = true;
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157 | break;
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158 | case 'G' :
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159 | sscanf(optarg,"%d",&use_growth_factor);
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160 | break;
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161 | case 'U' :
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162 | sscanf(optarg,"%d",&no_poisson_type);
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163 | break;
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164 | case 'F' :
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165 | sscanf(optarg,"%d",&filter_by_pixel);
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166 | break;
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167 | case 'x' :
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168 | sscanf(optarg,"%ld,%lf",&nx,&dx);
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169 | break;
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170 | case 'y' :
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171 | sscanf(optarg,"%ld,%lf",&ny,&dy);
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172 | break;
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173 | case 'z' :
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174 | sscanf(optarg,"%ld,%lf",&nz,&dz);
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175 | break;
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176 | case 's' :
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177 | sscanf(optarg,"%lf,%d",&snoise,&noise_evol);
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178 | break;
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179 | case 'Z' :
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180 | sscanf(optarg,"%lf",&zref);
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181 | break;
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182 | case '2' :
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183 | comp2dspec = true;
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184 | break;
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185 | case 'N' :
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186 | sscanf(optarg,"%lf",&scalemass);
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187 | if(scalemass==0.) scalemass = 1.;
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188 | break;
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189 | case 'M' :
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190 | sscanf(optarg,"%lf,%lf,%d",&schmin,&schmax,&schnpt);
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191 | break;
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192 | case 'Q' :
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193 | use_schmassdist = true;
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194 | sscanf(optarg,"%ld",&naleagal);
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195 | break;
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196 | case 'R' :
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197 | schmassdistfile = optarg;
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198 | break;
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199 | //// case 'A' :
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200 | ////do_agn = true;
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201 | ////sscanf(optarg,"%lf,%lf,%lf",&lfjy_agn,&lsigma_agn,&powlaw_agn);
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202 | ////break;
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203 | case '8' :
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204 | sscanf(optarg,"%lf,%lf",&sigmaR,&R);
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205 | break;
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206 | case 'V' :
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207 | compvarreal = true;
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208 | break;
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209 | case 'W' :
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210 | wfits = true;
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211 | break;
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212 | case 'P' :
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213 | wppf = true;
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214 | break;
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215 | case 'O' :
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216 | sscanf(optarg,"%hu,%hu,%hu,%hu,%hu"
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217 | ,&whattowrt[0],&whattowrt[1],&whattowrt[2],&whattowrt[3],&whattowrt[4]);
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218 | break;
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219 | case 'S' :
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220 | wslice = true;
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221 | break;
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222 | case 'o' :
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223 | rootnameout = optarg;
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224 | break;
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225 | case 'T' :
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226 | sscanf(optarg,"%d",&nth);
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227 | nthread = (nth<1)? 0: nth;
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228 | break;
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229 | case 'h' :
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230 | default :
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231 | usage(); return -1;
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232 | }
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233 | }
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234 |
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235 | double lschmin=log10(schmin), lschmax=log10(schmax);
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236 | if(schnpt<=0) { // alors c'est un nombre de points par decade
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237 | schnpt = long( (-schnpt)*(lschmax-lschmin+1.) + 0.5 );
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238 | if(schnpt<=2) schnpt = 1000;
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239 | }
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240 | if(naleagal<=2) naleagal = 100000;
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241 |
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242 | cout<<"zref="<<zref<<endl;
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243 | cout<<"nx="<<nx<<" dx="<<dx<<" ny="<<ny<<" dy="<<dy<<" nz="<<nz<<" dz="<<dz<<endl;
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244 | cout<<"kmin="<<kmin<<" ("<<lkmin<<"), kmax="<<kmax<<" ("<<lkmax<<") Mpc^-1"
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245 | <<", npt="<<npt<<endl;
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246 | cout<<"Filter by pixel = "<<filter_by_pixel<<endl;
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247 | cout<<"R="<<R<<" Rg="<<Rg<<" Mpc, sigmaR="<<sigmaR<<endl;
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248 | cout<<"Use_growth_factor = "<<use_growth_factor<<endl;
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249 | cout<<"nstar= "<<nstar<<" mstar="<<mstar<<" alpha="<<alpha<<endl;
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250 | cout<<"schmin="<<schmin<<" ("<<lschmin
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251 | <<"), schmax="<<schmax<<" ("<<lschmax<<") Msol"
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252 | <<", schnpt="<<schnpt<<endl;
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253 | if(no_poisson_type!=0) cout<<"No poisson fluctuation, direct conversion to HI mass, typ="
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254 | <<no_poisson_type<<endl;
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255 | cout<<"snoise="<<snoise<<" equivalent Msol, evolution="<<noise_evol<<endl;
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256 | cout<<"scalemass="<<scalemass<<endl;
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257 | ////if(do_agn)
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258 | //// cout<<"AGN: <log10(Jy)>="<<lfjy_agn<<" , sigma="<<lsigma_agn
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259 | //// <<" , powlaw="<<powlaw_agn<<endl;
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260 | cout<<"wfits="<<wfits<<" wppf="<<wppf<<" wslice="<<wslice<<" what?="
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261 | <<whattowrt[0]<<","<<whattowrt[1]<<","<<whattowrt[2]<<","<<whattowrt[3]<<","
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262 | <<whattowrt[4]<<endl;
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263 | cout<<"rootnameout="<<rootnameout<<endl;
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264 |
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265 | string tagobs = rootnameout + ".ppf";
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266 | POutPersist posobs(tagobs);
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267 |
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268 | //-----------------------------------------------------------------
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269 | cout<<endl<<"\n--- Create Cosmology"<<endl;
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270 |
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271 | CosmoCalc univ(flat,true,zref+1.);
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272 | univ.SetInteg(perc,dzinc,dzmax,glorder);
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273 | univ.SetDynParam(h100,om0,or0,ol0,w0);
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274 | univ.PrtInteg();
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275 | univ.Print();
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276 | double loscomref = univ.Dloscom(zref);
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277 | cout<<"\nzref = "<<zref<<" -> dloscom = "<<loscomref<<" Mpc"<<endl;
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278 | univ.Print(zref);
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279 |
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280 | //-----------------------------------------------------------------
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281 | cout<<endl<<"\n--- Create Spectrum"<<endl;
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282 |
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283 | InitialSpectrum pkini(ns,as);
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284 |
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285 | TransfertEisenstein tf(h100,om0-ob0,ob0,T_CMB_Par,false);
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286 | //tf.SetNoOscEnv(2);
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287 |
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288 | GrowthFactor growth(om0,ol0);
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289 | // GrowthFactor growth(1.,0.); // D(z) = 1/(1+z)
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290 | double growth_at_z = growth(zref);
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291 | cout<<"...Growth factor at z="<<zref<<" = "<<growth_at_z<<endl;
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292 |
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293 | PkSpectrum0 pk0(pkini,tf);
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294 |
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295 | PkSpectrumZ pkz(pk0,growth,zref);
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296 |
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297 | //-----------------------------------------------------------------
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298 | pkz.SetZ(0.);
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299 | cout<<endl<<"\n--- Compute variance for top-hat R="<<R
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300 | <<" at z="<<pkz.GetZ()<<endl;
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301 | VarianceSpectrum varpk_th(pkz,R,VarianceSpectrum::TOPHAT);
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302 | double kfind_th = varpk_th.FindMaximum(kmin,kmax,eps);
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303 | double pkmax_th = varpk_th(kfind_th);
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304 | cout<<"kfind_th = "<<kfind_th<<" ("<<log10(kfind_th)<<"), integrand="<<pkmax_th<<endl;
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305 | double k1=kmin, k2=kmax;
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306 | int rc = varpk_th.FindLimits(pkmax_th/1.e4,k1,k2,eps);
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307 | cout<<"limit_th: rc="<<rc<<" : "<<k1<<" ("<<log10(k1)<<") , "
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308 | <<k2<<" ("<<log10(k2)<<")"<<endl;
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309 |
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310 | double ldlk = (log10(k2)-log10(k1))/npt;
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311 | varpk_th.SetInteg(0.01,ldlk,-1.,4);
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312 | double sr2 = varpk_th.Variance(k1,k2);
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313 | cout<<"varpk_th="<<sr2<<" -> sigma="<<sqrt(sr2)<<endl;
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314 |
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315 | double normpkz = sigmaR*sigmaR/sr2;
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316 | pkz.SetScale(normpkz);
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317 | cout<<"Spectrum normalisation = "<<pkz.GetScale()<<endl;
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318 |
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319 | {
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320 | Histo hpkz0(lkmin,lkmax,npt); hpkz0.ReCenterBin();
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321 | FuncToHisto(pkz,hpkz0,true);
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322 | tagobs = "hpkz0"; posobs.PutObject(hpkz0,tagobs);
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323 | }
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324 |
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325 | pkz.SetZ(zref);
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326 |
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327 | {
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328 | Histo hpkz(lkmin,lkmax,npt); hpkz.ReCenterBin();
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329 | FuncToHisto(pkz,hpkz,true);
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330 | tagobs = "hpkz"; posobs.PutObject(hpkz,tagobs);
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331 | }
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332 |
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333 | //-----------------------------------------------------------------
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334 | cout<<endl<<"\n--- Compute variance for Pk at z="<<pkz.GetZ()<<endl;
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335 | VarianceSpectrum varpk_int(pkz,R,VarianceSpectrum::NOFILTER);
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336 |
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337 | double kfind_int = varpk_int.FindMaximum(kmin,kmax,eps);
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338 | double pkmax_int = varpk_int(kfind_int);
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339 | cout<<"kfind_int = "<<kfind_int<<" ("<<log10(kfind_int)<<"), integrand="<<pkmax_int<<endl;
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340 | double k1int=kmin, k2int=kmax;
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341 | int rcint = varpk_int.FindLimits(pkmax_int/1.e4,k1int,k2int,eps);
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342 | cout<<"limit_int: rc="<<rcint<<" : "<<k1int<<" ("<<log10(k1int)<<") , "
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343 | <<k2int<<" ("<<log10(k2int)<<")"<<endl;
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344 |
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345 | double ldlkint = (log10(k2int)-log10(k1int))/npt;
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346 | varpk_int.SetInteg(0.01,ldlkint,-1.,4);
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347 | double sr2int = varpk_int.Variance(k1int,k2int);
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348 | cout<<"varpk_int="<<sr2int<<" -> sigma="<<sqrt(sr2int)<<endl;
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349 |
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350 | //-----------------------------------------------------------------
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351 | cout<<endl<<"\n--- Create mass function, compute number/mass density, init mass trials"<<endl;
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352 |
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353 | Schechter sch(nstar,mstar,alpha);
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354 | sch.Print();
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355 |
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356 | sch.SetOutValue(0);
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357 | cout<<"sch(mstar) = "<<sch(mstar)<<" /Mpc^3/Msol"<<endl;
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358 | double ngal_by_mpc3 = sch.Integrate(schmin,schmax,schnpt);
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359 | cout<<"Galaxy density number = "<<ngal_by_mpc3<<" /Mpc^3 between limits"<<endl;
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360 |
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361 | sch.SetOutValue(1);
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362 | cout<<"mstar*sch(mstar) = "<<sch(mstar)<<" Msol/Mpc^3/Msol"<<endl;
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363 | double mass_by_mpc3 = sch.Integrate(schmin,schmax,schnpt);
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364 | cout<<"Galaxy mass density= "<<mass_by_mpc3<<" Msol/Mpc^3 between limits"<<endl;
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365 | cout<<"Omega_HI at z=0 is "<<mass_by_mpc3/(univ.Rhoc(0.)*GCm3toMsolMpc3_Cst)<<endl
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366 | <<" at z="<<zref<<" is "<<mass_by_mpc3/(univ.Rhoc(zref)*GCm3toMsolMpc3_Cst)<<endl;
|
---|
367 |
|
---|
368 | SchechterMassDist schmdist(sch,schmin,schmax,schnpt);
|
---|
369 | if(use_schmassdist && schmassdistfile.size()>0) {
|
---|
370 | cout<<"\nSchechterMassDist read from "<<schmassdistfile<<endl;
|
---|
371 | schmdist.ReadPPF(schmassdistfile);
|
---|
372 | bool compsch = IsCompatible(sch,schmdist.GetSchechter());
|
---|
373 | double m1,m2; schmdist.GetMassLim(m1,m2);
|
---|
374 | if( !compsch || fabs(m1-schmin)>1e-4*schmin || fabs(m2-schmax)>1e-4*schmax) {
|
---|
375 | cout<<"FATAL_ERROR: INCONSISTENT SchechterMassDist file / Schechter or limits"<<endl;
|
---|
376 | cout<<"Schechter:"<<endl; sch.Print();
|
---|
377 | cout<<"schmin="<<schmin<<" schmax="<<schmax<<endl;
|
---|
378 | cout<<"SchechterMassDist:"<<endl; schmdist.Print();
|
---|
379 | return -10;
|
---|
380 | }
|
---|
381 | recompute_schmassdist = false;
|
---|
382 | }
|
---|
383 | schmdist.Print();
|
---|
384 | Histo hmdndm = schmdist.GetHmDnDm();
|
---|
385 | FunRan tirhmdndm = schmdist.GetTmDnDm();
|
---|
386 | {
|
---|
387 | tagobs = "hmdndm"; posobs.PutObject(hmdndm,tagobs);
|
---|
388 | Histo hdum1(tirhmdndm);
|
---|
389 | tagobs = "tirhmdndm"; posobs.PutObject(hdum1,tagobs);
|
---|
390 | }
|
---|
391 |
|
---|
392 | PrtTim(">>>> End of definition");
|
---|
393 |
|
---|
394 | //-----------------------------------------------------------------
|
---|
395 | // FFTW3 (p26): faster if sizes 2^a 3^b 5^c 7^d 11^e 13^f with e+f=0 ou 1
|
---|
396 | cout<<endl<<"\n--- Initialisation de GeneFluct3D"<<endl;
|
---|
397 |
|
---|
398 | GeneFluct3D fluct3d(nx,ny,nz,dx,dy,dz,nthread,2);
|
---|
399 | fluct3d.SetObservator(zref,-nz/2.);
|
---|
400 | fluct3d.SetCosmology(univ);
|
---|
401 | fluct3d.SetGrowthFactor(growth);
|
---|
402 | fluct3d.LosComRedshift(0.001,-1);
|
---|
403 | //TArray< complex<GEN3D_TYPE> >& pkgen = fluct3d.GetComplexArray();
|
---|
404 | //TArray<GEN3D_TYPE>& rgen = fluct3d.GetRealArray();
|
---|
405 | cout<<endl; fluct3d.Print();
|
---|
406 | cout<<"\nMean number of galaxies per pixel = "<<ngal_by_mpc3*fluct3d.GetDVol()<<endl;
|
---|
407 | double mass_by_pixel = mass_by_mpc3 * fluct3d.GetDVol();
|
---|
408 | cout<<"Mean mass per pixel = "<<mass_by_pixel<<endl;
|
---|
409 |
|
---|
410 | double dkmin = fluct3d.GetKincMin();
|
---|
411 | double knyqmax = fluct3d.GetKmax();
|
---|
412 | long nherr = long(knyqmax/dkmin+0.5);
|
---|
413 | cout<<"\nFor HistoErr: d="<<dkmin<<" max="<<knyqmax<<" n="<<nherr<<endl;
|
---|
414 |
|
---|
415 | double dktmin = fluct3d.GetKTincMin();
|
---|
416 | double ktnyqmax = fluct3d.GetKTmax();
|
---|
417 | long nherrt = long(ktnyqmax/dktmin+0.5);
|
---|
418 | double dkzmin = fluct3d.GetKinc()[2];
|
---|
419 | double kznyqmax = fluct3d.GetKnyq()[2];
|
---|
420 | long nherrz = long(kznyqmax/dkzmin+0.5);
|
---|
421 | cout<<"For Histo2DErr: d="<<dktmin<<","<<dkzmin
|
---|
422 | <<" max="<<ktnyqmax<<","<<kznyqmax<<" n="<<nherrt<<","<<nherrz<<endl;
|
---|
423 |
|
---|
424 | //-----------------------------------------------------------------
|
---|
425 | cout<<"\n--- Computing spectra variance up to Kmax at z="<<pkz.GetZ()<<endl;
|
---|
426 | // En fait on travaille sur un cube inscrit dans la sphere de rayon kmax:
|
---|
427 | // sphere: Vs = 4Pi/3 k^3 , cube inscrit (cote k*sqrt(2)): Vc = (k*sqrt(2))^3
|
---|
428 | // Vc/Vs = 0.675 -> keff = kmax * (0.675)^(1/3) = kmax * 0.877
|
---|
429 | double knyqmax_mod = 0.877*knyqmax;
|
---|
430 | ldlkint = (log10(knyqmax_mod)-log10(k1int))/npt;
|
---|
431 | varpk_int.SetInteg(0.01,ldlkint,-1.,4);
|
---|
432 | double sr2int_kmax = varpk_int.Variance(k1int,knyqmax_mod);
|
---|
433 | cout<<"varpk_int(<"<<knyqmax_mod<<")="<<sr2int_kmax<<" -> sigma="<<sqrt(sr2int_kmax)<<endl;
|
---|
434 |
|
---|
435 | PrtTim(">>>> End Initialisation de GeneFluct3D");
|
---|
436 |
|
---|
437 | //-----------------------------------------------------------------
|
---|
438 | cout<<"\n--- Computing a realization in Fourier space"<<endl;
|
---|
439 | if(use_growth_factor>0) pkz.SetZ(0.); else pkz.SetZ(zref);
|
---|
440 | cout<<"Power spectrum set at redshift: "<<pkz.GetZ()<<endl;
|
---|
441 | if(computefourier0) fluct3d.ComputeFourier0(pkz);
|
---|
442 | else fluct3d.ComputeFourier(pkz);
|
---|
443 | fluct3d.NTupleCheck(posobs,string("ntpkgen"),ntnent);
|
---|
444 | PrtTim(">>>> End Computing a realization in Fourier space");
|
---|
445 |
|
---|
446 | cout<<"\n--- Checking realization spectra"<<endl;
|
---|
447 | HistoErr hpkgen(0.,knyqmax,nherr);
|
---|
448 | hpkgen.ReCenterBin(); hpkgen.Zero();
|
---|
449 | hpkgen.Show();
|
---|
450 | fluct3d.ComputeSpectrum(hpkgen);
|
---|
451 | {
|
---|
452 | tagobs = "hpkgen"; posobs.PutObject(hpkgen,tagobs);
|
---|
453 | }
|
---|
454 | PrtTim(">>>> End Checking realization spectra");
|
---|
455 |
|
---|
456 | if(comp2dspec) {
|
---|
457 | cout<<"\n--- Checking realization 2D spectra"<<endl;
|
---|
458 | Histo2DErr hpkgen2(0.,ktnyqmax,nherrt,0.,kznyqmax,nherrz);
|
---|
459 | hpkgen2.ReCenterBin(); hpkgen2.Zero();
|
---|
460 | hpkgen2.Show();
|
---|
461 | fluct3d.ComputeSpectrum2D(hpkgen2);
|
---|
462 | {
|
---|
463 | tagobs = "hpkgen2"; posobs.PutObject(hpkgen2,tagobs);
|
---|
464 | }
|
---|
465 | PrtTim(">>>> End Checking realization 2D spectra");
|
---|
466 | }
|
---|
467 |
|
---|
468 | if(filter_by_pixel!=0) {
|
---|
469 | cout<<"\n--- Computing convolution by pixel shape"<<endl;
|
---|
470 | fluct3d.FilterByPixel();
|
---|
471 | fluct3d.NTupleCheck(posobs,string("ntpkgenf"),ntnent);
|
---|
472 | PrtTim(">>>> End Computing convolution by pixel shape");
|
---|
473 |
|
---|
474 | cout<<"\n--- Checking realization spectra after pixel shape convol."<<endl;
|
---|
475 | HistoErr hpkgenfb(0.,knyqmax,nherr);
|
---|
476 | hpkgenfb.ReCenterBin(); hpkgenfb.Zero();
|
---|
477 | hpkgenfb.Show();
|
---|
478 | fluct3d.ComputeSpectrum(hpkgenfb);
|
---|
479 | {
|
---|
480 | tagobs = "hpkgenfb"; posobs.PutObject(hpkgenfb,tagobs);
|
---|
481 | }
|
---|
482 | PrtTim(">>>> End Checking realization spectra");
|
---|
483 |
|
---|
484 | cout<<"\n--- Checking realization spectra after pixel shape convol. with pixel correc."<<endl;
|
---|
485 | HistoErr hpkgenf(hpkgenfb); hpkgenf.Zero();
|
---|
486 | fluct3d.ComputeSpectrum(hpkgenf,0.,filter_by_pixel);
|
---|
487 | {
|
---|
488 | tagobs = "hpkgenf"; posobs.PutObject(hpkgenf,tagobs);
|
---|
489 | }
|
---|
490 | PrtTim(">>>> End Checking realization spectra with pixel correc.");
|
---|
491 |
|
---|
492 | if(comp2dspec) {
|
---|
493 | cout<<"\n--- Checking realization 2D spectra after pixel shape convol."<<endl;
|
---|
494 | Histo2DErr hpkgenfb2(0.,ktnyqmax,nherrt,0.,kznyqmax,nherrz);
|
---|
495 | hpkgenfb2.ReCenterBin(); hpkgenfb2.Zero();
|
---|
496 | hpkgenfb2.Show();
|
---|
497 | fluct3d.ComputeSpectrum2D(hpkgenfb2);
|
---|
498 | {
|
---|
499 | tagobs = "hpkgenfb2"; posobs.PutObject(hpkgenfb2,tagobs);
|
---|
500 | }
|
---|
501 | PrtTim(">>>> End Checking realization 2D spectra");
|
---|
502 |
|
---|
503 | cout<<"\n--- Checking realization 2D spectra after pixel shape convol. with pixel correc."<<endl;
|
---|
504 | Histo2DErr hpkgenf2(hpkgenfb2); hpkgenf2.Zero();
|
---|
505 | fluct3d.ComputeSpectrum2D(hpkgenf2,0.,filter_by_pixel);
|
---|
506 | {
|
---|
507 | tagobs = "hpkgenf2"; posobs.PutObject(hpkgenf2,tagobs);
|
---|
508 | }
|
---|
509 | PrtTim(">>>> End Checking realization 2D spectra with pixel correc.");
|
---|
510 | }
|
---|
511 | }
|
---|
512 |
|
---|
513 | if(whattowrt[0]==1) {
|
---|
514 | if(wfits) {
|
---|
515 | tagobs = "!" + rootnameout + "_k0.fits";
|
---|
516 | fluct3d.WriteFits(tagobs);
|
---|
517 | PrtTim(">>>> End WriteFits");
|
---|
518 | }
|
---|
519 | if(wppf) {
|
---|
520 | tagobs = rootnameout + "_k0.ppf";
|
---|
521 | fluct3d.WritePPF(tagobs,false);
|
---|
522 | PrtTim(">>>> End WritePPF");
|
---|
523 | }
|
---|
524 | }
|
---|
525 |
|
---|
526 | //-----------------------------------------------------------------
|
---|
527 | cout<<"\n--- Computing a realization in real space"<<endl;
|
---|
528 | fluct3d.ComputeReal();
|
---|
529 | double rmin,rmax; fluct3d.MinMax(rmin,rmax);
|
---|
530 | cout<<"rgen.Min = "<<rmin<<" , Max="<<rmax<<endl;
|
---|
531 | fluct3d.NTupleCheck(posobs,string("ntreal"),ntnent);
|
---|
532 | PrtTim(">>>> End Computing a realization in real space");
|
---|
533 |
|
---|
534 | if(use_growth_factor>0) {
|
---|
535 | cout<<"\n--- Apply Growth factor"<<endl;
|
---|
536 | cout<<"...D(z=0)="<<growth(0.)<<" D(z="<<zref<<")="<<growth(zref)<<endl;
|
---|
537 | fluct3d.ApplyGrowthFactor(use_growth_factor);
|
---|
538 | fluct3d.MinMax(rmin,rmax);
|
---|
539 | cout<<"rgen.Min = "<<rmin<<" , Max="<<rmax<<endl;
|
---|
540 | fluct3d.NTupleCheck(posobs,string("ntgrow"),ntnent);
|
---|
541 | PrtTim(">>>> End Applying growth factor");
|
---|
542 | }
|
---|
543 |
|
---|
544 | int_8 nm;
|
---|
545 | double rmref,rs2ref;
|
---|
546 | cout<<"\n--- Computing reference variance in real space"<<endl;
|
---|
547 | nm = fluct3d.MeanSigma2(rmref,rs2ref);
|
---|
548 | cout<<" rs2ref= "<<rs2ref<<" , rmref="<<rmref<<" ("<<nm<<")"<<endl;
|
---|
549 | PrtTim(">>>> End Computing reference variance in real space");
|
---|
550 |
|
---|
551 | if(whattowrt[1]==1) {
|
---|
552 | if(wfits) {
|
---|
553 | tagobs = "!" + rootnameout + "_r0.fits";
|
---|
554 | fluct3d.WriteFits(tagobs);
|
---|
555 | PrtTim(">>>> End WriteFits");
|
---|
556 | }
|
---|
557 | if(wppf) {
|
---|
558 | tagobs = rootnameout + "_r0.ppf";
|
---|
559 | fluct3d.WritePPF(tagobs,true);
|
---|
560 | PrtTim(">>>> End WritePPF");
|
---|
561 | }
|
---|
562 | if(wslice) {
|
---|
563 | tagobs = rootnameout + "_s_r0.ppf";
|
---|
564 | fluct3d.WriteSlicePPF(tagobs);
|
---|
565 | PrtTim(">>>> End WriteSlicePPF");
|
---|
566 | }
|
---|
567 | }
|
---|
568 |
|
---|
569 | cout<<"\n--- Check mean and variance in real space"<<endl;
|
---|
570 | fluct3d.NumberOfBad(-1.,1e+200);
|
---|
571 | double rm,rs2;
|
---|
572 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
573 | PrtTim(">>>> End Check mean and variance in real space");
|
---|
574 |
|
---|
575 | if(compvarreal) {
|
---|
576 | cout<<"\n--- Check variance sigmaR in real space"<<endl;
|
---|
577 | double varr;
|
---|
578 | fluct3d.VarianceFrReal(R,varr);
|
---|
579 | cout<<"...Computed variance = "<<varr
|
---|
580 | <<" , Theorical variance at (z=0) = "<<pow(sigmaR,2.)
|
---|
581 | <<" , at (z="<<zref<<") = "<<pow(sigmaR*growth_at_z,2.)<<endl;
|
---|
582 | PrtTim(">>>> End Check variance sigmaR in real space");
|
---|
583 | }
|
---|
584 |
|
---|
585 | //-----------------------------------------------------------------
|
---|
586 | if(no_poisson_type!=0) {
|
---|
587 | cout<<"\n--- Converting !!!DIRECTLY!!! mass into HI mass: mass per pixel ="
|
---|
588 | <<mass_by_pixel<<endl;
|
---|
589 | if(no_poisson_type<0) {
|
---|
590 | cout<<"!!!WARNING!!! dRho/Rho is just multiplied by "<<mass_by_pixel<<endl;
|
---|
591 | fluct3d.ScaleOffset(mass_by_pixel);
|
---|
592 | } else {
|
---|
593 | rm = fluct3d.TurnFluct2MeanNumber(mass_by_mpc3); // ici on doit donner Msol/Mpc^3
|
---|
594 | }
|
---|
595 | fluct3d.NTupleCheck(posobs,string("ntmhi"),ntnent);
|
---|
596 | } else {
|
---|
597 | cout<<"\n--- Converting mass into galaxy number: gal per pixel ="
|
---|
598 | <<ngal_by_mpc3*fluct3d.GetDVol()<<endl;
|
---|
599 | rm = fluct3d.TurnFluct2MeanNumber(ngal_by_mpc3); // ici on doit donner Ngal/Mpc^3
|
---|
600 | fluct3d.NTupleCheck(posobs,string("ntmeang"),ntnent);
|
---|
601 | }
|
---|
602 | nm = fluct3d.MeanSigma2(rm,rs2,0.,1e200);
|
---|
603 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
604 | if(rm>0.) cout<<"normalised sigma(dM/M) is "<<sqrt(rs2)/rm<<endl;
|
---|
605 | PrtTim(">>>> End Converting mass into galaxy number or mass");
|
---|
606 |
|
---|
607 | if( no_poisson_type==0 ) {
|
---|
608 |
|
---|
609 | cout<<"\n--- Apply poisson on galaxy number"<<endl;
|
---|
610 | fluct3d.ApplyPoisson();
|
---|
611 | nm = fluct3d.MeanSigma2(rm,rs2,0.,1e200);
|
---|
612 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
613 | double xgalmin,xgalmax; fluct3d.MinMax(xgalmin,xgalmax,0.1,1.e50);
|
---|
614 | fluct3d.NTupleCheck(posobs,string("ntpois"),ntnent);
|
---|
615 | PrtTim(">>>> End Apply poisson on galaxy number");
|
---|
616 | if(wslice) {
|
---|
617 | tagobs = rootnameout + "_s_rn.ppf";
|
---|
618 | fluct3d.WriteSlicePPF(tagobs);
|
---|
619 | PrtTim(">>>> End WriteSlicePPF");
|
---|
620 | }
|
---|
621 |
|
---|
622 | cout<<"\n--- Convert Galaxy number to HI mass"<<endl;
|
---|
623 | double mhi = 0.;
|
---|
624 | if(use_schmassdist) {
|
---|
625 | if(recompute_schmassdist) {
|
---|
626 | int ngalmax = int(xgalmax+0.5);
|
---|
627 | schmdist.SetNgalLim(ngalmax,1,naleagal);
|
---|
628 | PrtTim(">>>> End creating tabulated histograms for trials");
|
---|
629 | }
|
---|
630 | mhi = fluct3d.TurnNGal2MassQuick(schmdist);
|
---|
631 | schmdist.PrintStatus();
|
---|
632 | } else {
|
---|
633 | mhi = fluct3d.TurnNGal2Mass(tirhmdndm,true);
|
---|
634 | }
|
---|
635 | cout<<mhi<<" MSol in survey / "<<mass_by_mpc3*fluct3d.GetVol()<<endl;
|
---|
636 | nm = fluct3d.MeanSigma2(rm,rs2,0.,1e200);
|
---|
637 | cout<<"Equivalent: "<<rm*nm/fluct3d.NPix()<<" Msol / pixels"<<endl;
|
---|
638 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
639 | fluct3d.NTupleCheck(posobs,string("ntmhi"),ntnent);
|
---|
640 | PrtTim(">>>> End Convert Galaxy number to HI mass");
|
---|
641 |
|
---|
642 | }
|
---|
643 |
|
---|
644 | //-----------------------------------------------------------------
|
---|
645 | if(whattowrt[2]==1) {
|
---|
646 | if(wfits) {
|
---|
647 | tagobs = "!" + rootnameout + "_r.fits";
|
---|
648 | fluct3d.WriteFits(tagobs);
|
---|
649 | PrtTim(">>>> End WriteFits");
|
---|
650 | }
|
---|
651 | if(wppf) {
|
---|
652 | tagobs = rootnameout + "_r.ppf";
|
---|
653 | fluct3d.WritePPF(tagobs,true);
|
---|
654 | PrtTim(">>>> End WritePPF");
|
---|
655 | }
|
---|
656 | if(wslice) {
|
---|
657 | tagobs = rootnameout + "_s_r.ppf";
|
---|
658 | fluct3d.WriteSlicePPF(tagobs);
|
---|
659 | PrtTim(">>>> End WriteSlicePPF");
|
---|
660 | }
|
---|
661 | }
|
---|
662 |
|
---|
663 | //-----------------------------------------------------------------
|
---|
664 | ////if(do_agn) {
|
---|
665 | //// cout<<"\n--- Add AGN: <log10(S Jy)>="<<lfjy_agn<<" , sigma="<<lsigma_agn
|
---|
666 | //// <<" , powlaw="<<powlaw_agn<<endl;
|
---|
667 | //// fluct3d.AddAGN(lfjy_agn,lsigma_agn,powlaw_agn);
|
---|
668 | //// nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
669 | //// fluct3d.NTupleCheck(posobs,string("ntagn"),ntnent);
|
---|
670 | //// PrtTim(">>>> End Add AGN");
|
---|
671 | ////}
|
---|
672 |
|
---|
673 | //-----------------------------------------------------------------
|
---|
674 | double snoisesave = 0.;
|
---|
675 | if(snoise>0.) {
|
---|
676 | cout<<"\n--- Add noise to HI Flux snoise="<<snoise<<", evolution="<<noise_evol<<endl;
|
---|
677 | fluct3d.AddNoise2Real(snoise,noise_evol);
|
---|
678 | snoisesave = snoise;
|
---|
679 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
680 | fluct3d.NTupleCheck(posobs,string("ntnois"),ntnent);
|
---|
681 | PrtTim(">>>> End Add noise");
|
---|
682 | }
|
---|
683 |
|
---|
684 | //-----------------------------------------------------------------
|
---|
685 | if(scalemass!=0. && scalemass!=1.) { // Si scalemass==0 pas de normalisation
|
---|
686 | if(scalemass<0.) scalemass = 1. / (-scalemass * mass_by_pixel);
|
---|
687 | cout<<"\n--- Scale cube scale="<<scalemass<<endl;
|
---|
688 | fluct3d.ScaleOffset(scalemass);
|
---|
689 | snoisesave *= scalemass;
|
---|
690 | nm = fluct3d.MeanSigma2(rm,rs2);
|
---|
691 | PrtTim(">>>> End Scale cube");
|
---|
692 | }
|
---|
693 | fluct3d.NTupleCheck(posobs,string("ntfin"),ntnent);
|
---|
694 |
|
---|
695 | //-----------------------------------------------------------------
|
---|
696 | if(whattowrt[3]==1) {
|
---|
697 | if(wfits) {
|
---|
698 | tagobs = "!" + rootnameout + "_rf.fits";
|
---|
699 | fluct3d.WriteFits(tagobs);
|
---|
700 | PrtTim(">>>> End WriteFits");
|
---|
701 | }
|
---|
702 | if(wppf) {
|
---|
703 | tagobs = rootnameout + "_rf.ppf";
|
---|
704 | fluct3d.WritePPF(tagobs,true);
|
---|
705 | PrtTim(">>>> End WritePPF");
|
---|
706 | }
|
---|
707 | if(wslice) {
|
---|
708 | tagobs = rootnameout + "_s_rf.ppf";
|
---|
709 | fluct3d.WriteSlicePPF(tagobs);
|
---|
710 | PrtTim(">>>> End WriteSlicePPF");
|
---|
711 | }
|
---|
712 | }
|
---|
713 |
|
---|
714 | //-----------------------------------------------------------------
|
---|
715 | // -- NE PAS FAIRE CA SI ON VEUT CONTINUER LA SIMULATION -> d_rho/rho ecrase
|
---|
716 |
|
---|
717 | cout<<endl<<"\n--- ReComputing spectrum from real space"<<endl;
|
---|
718 | fluct3d.ReComputeFourier();
|
---|
719 | fluct3d.NTupleCheck(posobs,string("ntpkrec"),ntnent);
|
---|
720 | PrtTim(">>>> End ReComputing spectrum");
|
---|
721 |
|
---|
722 | if(whattowrt[4]==1) {
|
---|
723 | if(wfits) {
|
---|
724 | tagobs = "!" + rootnameout + "_k.fits";
|
---|
725 | fluct3d.WriteFits(tagobs);
|
---|
726 | PrtTim(">>>> End WriteFits");
|
---|
727 | }
|
---|
728 | if(wppf) {
|
---|
729 | tagobs = rootnameout + "_k.ppf";
|
---|
730 | fluct3d.WritePPF(tagobs,false);
|
---|
731 | PrtTim(">>>> End WritePPF");
|
---|
732 | }
|
---|
733 | }
|
---|
734 |
|
---|
735 | cout<<endl<<"\n--- Computing final spectrum"<<endl;
|
---|
736 | HistoErr hpkrecb(0.,knyqmax,nherr); hpkrecb.Zero();
|
---|
737 | hpkrecb.ReCenterBin();
|
---|
738 | hpkrecb.Show();
|
---|
739 | fluct3d.ComputeSpectrum(hpkrecb);
|
---|
740 | {
|
---|
741 | tagobs = "hpkrecb"; posobs.PutObject(hpkrecb,tagobs);
|
---|
742 | }
|
---|
743 | PrtTim(">>>> End Computing final spectrum");
|
---|
744 |
|
---|
745 | cout<<endl<<"\n--- Computing final spectrum with pixel deconv."<<endl;
|
---|
746 | HistoErr hpkrec(hpkrecb); hpkrec.Zero();
|
---|
747 | fluct3d.ComputeSpectrum(hpkrec,snoisesave,filter_by_pixel);
|
---|
748 | {
|
---|
749 | tagobs = "hpkrec"; posobs.PutObject(hpkrec,tagobs);
|
---|
750 | }
|
---|
751 | PrtTim(">>>> End Computing final spectrum with pixel deconv.");
|
---|
752 |
|
---|
753 | if(comp2dspec) {
|
---|
754 | cout<<"\n--- Computing final 2D spectrum"<<endl;
|
---|
755 | Histo2DErr hpkrecb2(0.,ktnyqmax,nherrt,0.,kznyqmax,nherrz);
|
---|
756 | hpkrecb2.ReCenterBin(); hpkrecb2.Zero();
|
---|
757 | hpkrecb2.Show();
|
---|
758 | fluct3d.ComputeSpectrum2D(hpkrecb2);
|
---|
759 | {
|
---|
760 | tagobs = "hpkrecb2"; posobs.PutObject(hpkrecb2,tagobs);
|
---|
761 | }
|
---|
762 | PrtTim(">>>> End Computing final 2D spectrum");
|
---|
763 |
|
---|
764 | cout<<"\n--- Computing final 2D spectrum with pixel deconv."<<endl;
|
---|
765 | Histo2DErr hpkrec2(hpkrecb2); hpkrec2.Zero();
|
---|
766 | fluct3d.ComputeSpectrum2D(hpkrec2,snoisesave,filter_by_pixel);
|
---|
767 | {
|
---|
768 | tagobs = "hpkrec2"; posobs.PutObject(hpkrec2,tagobs);
|
---|
769 | }
|
---|
770 | PrtTim(">>>> End Computing final 2D spectrum with pixel deconv.");
|
---|
771 |
|
---|
772 | }
|
---|
773 |
|
---|
774 | PrtTim(">>>> End Of Job");
|
---|
775 | return 0;
|
---|
776 | }
|
---|
777 |
|
---|