[1654] | 1 | /* Lecteur de colonne de table Fits (binaire ou ASCII) avec buffer */
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[2615] | 2 | #include "sopnamsp.h"
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[1654] | 3 | #include "machdefs.h"
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| 4 | #include <stdlib.h>
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| 5 | #include <stdio.h>
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| 6 | #include "pexceptions.h"
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| 7 | #include "fabtcolread.h"
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[2449] | 8 |
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| 9 | ///////////////////////////////////////////////////////////////////
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| 10 | ///////////////////////////////////////////////////////////////////
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| 11 | ///////////////////////////////////////////////////////////////////
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| 12 | ///////////////////////////////////////////////////////////////////
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| 13 |
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| 14 | //! Class for opening a FITS file for reading
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| 15 |
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| 16 | /*!
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| 17 | \class SOPHYA::FitsOpenFile
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| 18 | \ingroup FitsIOServer
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| 19 | Class for opening a FITS file for reading
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| 20 | */
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| 21 |
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| 22 | /*!
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| 23 | Constructor.
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| 24 | \param fname : FITS file name to be opened for reading
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| 25 | */
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| 26 | FitsOpenFile::FitsOpenFile(string fname)
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| 27 | {
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| 28 | Init(fname.c_str());
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| 29 | }
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| 30 |
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| 31 | /*!
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| 32 | Constructor.
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| 33 | \param cfname : FITS file name to be opened for reading
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| 34 | */
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| 35 | FitsOpenFile::FitsOpenFile(const char *cfname)
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| 36 | {
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| 37 | Init(cfname);
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| 38 | }
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| 39 |
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| 40 | /*!
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| 41 | Constructor by default.
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| 42 | */
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| 43 | FitsOpenFile::FitsOpenFile()
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| 44 | {
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| 45 | FitsFN = "";
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[2456] | 46 | NHdu = IHdu = HduType = 0;
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| 47 | HasBeenPos = false;
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[2449] | 48 | FitsPtr = NULL;
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| 49 | }
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| 50 |
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| 51 | /*!
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| 52 | Constructor by copy.
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| 53 | */
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| 54 | FitsOpenFile::FitsOpenFile(FitsOpenFile& fof)
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| 55 | {
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[2456] | 56 | Init(fof.FileName().c_str());
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[2449] | 57 | }
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| 58 |
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| 59 | /*!
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| 60 | Destructor.
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| 61 | */
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| 62 | FitsOpenFile::~FitsOpenFile()
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| 63 | {
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| 64 | Delete();
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| 65 | FitsFN = "";
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[2456] | 66 | NHdu = IHdu = HduType = 0;
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| 67 | HasBeenPos = false;
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[2449] | 68 | }
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| 69 |
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| 70 | /*!
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| 71 | Delete routine called by the destructor.
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| 72 | */
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| 73 | void FitsOpenFile::Delete(void)
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| 74 | {
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| 75 | if(FitsPtr != NULL) {
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| 76 | int sta = 0;
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| 77 | if(fits_close_file(FitsPtr,&sta)) printerror(sta);
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| 78 | FitsPtr = NULL;
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| 79 | }
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| 80 | }
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| 81 |
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| 82 | /*! Init routine called by the constructor */
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| 83 | void FitsOpenFile::Init(const char* fname)
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| 84 | {
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[2456] | 85 | // Parametres Generaux
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| 86 | FitsFN = fname;
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| 87 | NHdu = IHdu = HduType = 0;
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| 88 | HasBeenPos = false;
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| 89 | FitsPtr = NULL;
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[2449] | 90 |
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[2456] | 91 | // Ouverture du fichier
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| 92 | if(FitsFN.size() <= 0 )
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| 93 | throw ParmError("FitsOpenFile::Init: Fits file name error\n");
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[2449] | 94 |
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[2456] | 95 | int sta = 0;
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| 96 | if(fits_open_file(&FitsPtr,FitsFN.c_str(),READONLY,&sta)) {
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| 97 | printerror(sta);
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| 98 | FitsPtr = NULL;
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| 99 | throw NullPtrError("FitsOpenFile::Init: Error opening Fits file\n");
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| 100 | }
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[2449] | 101 |
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[2456] | 102 | // Get number of hdu
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| 103 | if(fits_get_num_hdus(FitsPtr,&NHdu,&sta)) {
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| 104 | printerror(sta);
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| 105 | NHdu = 0;
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| 106 | Delete();
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| 107 | throw NotAvailableOperation("FitsOpenFile::Init: Error getting NHdu\n");
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| 108 | }
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| 109 | if(NHdu<=0) {
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| 110 | Delete();
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| 111 | throw SzMismatchError("FitsOpenFile::Init: Bad NHdu\n");
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| 112 | }
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[2449] | 113 |
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[2456] | 114 | MoveToHDU(1);
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| 115 | }
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| 116 |
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| 117 | /*! Move to an HDU
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| 118 | \param ihdu: hdu number to move
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| 119 | \warning ihdu = [1,nhdu]
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| 120 | \return 0 if positionning failed, ihdu if success
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| 121 | */
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| 122 | int FitsOpenFile::MoveToHDU(int ihdu)
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| 123 | {
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| 124 | if(FitsPtr==NULL)
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| 125 | throw NullPtrError("FitsOpenFile::MoveToHDU: no fits file open FitsPtr==NULL\n");
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| 126 | int ihdusave = IHdu;
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| 127 | if(ihdu<=0) ihdu=1; if(ihdu>NHdu) ihdu=NHdu;
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| 128 | int sta=0;
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| 129 | if(fits_movabs_hdu(FitsPtr,ihdu,&HduType,&sta)) {
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| 130 | printerror(sta);
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| 131 | // On se repositionne ou on etait
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| 132 | fits_movabs_hdu(FitsPtr,ihdusave,&HduType,&sta);
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| 133 | IHdu = ihdusave;
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| 134 | } else IHdu = ihdu;
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| 135 | return IHdu;
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| 136 | }
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| 137 |
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| 138 | /*! Move to the first HDU of a certain type
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| 139 | \param hdutype: type of the hdu
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| 140 | \param hdudeb: start at that hdu
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| 141 | \return the type of HDU the file is positionned
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| 142 | */
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| 143 | int FitsOpenFile::MoveToFirst(int hdutype,int ihdudeb)
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| 144 | {
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| 145 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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| 146 | int ihdusave = IHdu;
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| 147 | for(int ihdu=ihdudeb;ihdu<=NHdu;ihdu++) {
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| 148 | MoveToHDU(ihdu);
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| 149 | if(HduType==hdutype) break;
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[2449] | 150 | }
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[2456] | 151 | // Si echec, on se repositionne ou on etait
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| 152 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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| 153 | return HduType;
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| 154 | }
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[2449] | 155 |
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[2456] | 156 | /*! Move to the last HDU of a certain type
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| 157 | \param hdutype: type of the hdu
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| 158 | \param hdudeb: stop at that hdu
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| 159 | \return the type of HDU the file is positionned
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| 160 | */
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| 161 | int FitsOpenFile::MoveToLast(int hdutype,int ihdudeb)
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| 162 | {
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| 163 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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| 164 | int ihdusave = IHdu;
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| 165 | for(int ihdu=NHdu;ihdu>=ihdudeb;ihdu--) {
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| 166 | MoveToHDU(ihdu);
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| 167 | if(HduType==hdutype) break;
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| 168 | }
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| 169 | // Si echec, on se repositionne ou on etait
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| 170 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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| 171 | return HduType;
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| 172 | }
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| 173 |
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| 174 | /*! Print */
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| 175 | void FitsOpenFile::Print(void)
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| 176 | {
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| 177 | cout<<"FitsOpenFile::Print: "<<FitsFN
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| 178 | <<" hdu="<<IHdu<<"/"<<NHdu<<" type="<<HduType
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| 179 | <<" hasbeenpos="<<HasBeenPos<<endl;
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| 180 | }
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| 181 |
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[2453] | 182 | //////////////////////////////////////////////////////////////
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| 183 | //// Methodes statiques
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| 184 | //////////////////////////////////////////////////////////////
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| 185 | /*!
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| 186 | Read a fitsheader key into double
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| 187 | \param fitsptr : cfitio pointer to Fits file
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| 188 | \param keyname : name of the key
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| 189 | \return value into double
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| 190 | */
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| 191 | double FitsOpenFile::ReadKey(fitsfile *fitsptr,char *keyname)
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| 192 | {
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[2456] | 193 | if(keyname==NULL || fitsptr==NULL) return 0.;
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[2453] | 194 | int sta=0; double val=0.;
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| 195 | if(fits_read_key(fitsptr,TDOUBLE,keyname,&val,NULL,&sta))
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| 196 | printerror(sta);
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| 197 | return val;
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| 198 | }
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| 199 |
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| 200 | /*!
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| 201 | Read a fitsheader key into long
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| 202 | \param fitsptr : cfitio pointer to Fits file
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| 203 | \param keyname : name of the key
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| 204 | \return value into long
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| 205 | */
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| 206 | long FitsOpenFile::ReadKeyL(fitsfile *fitsptr,char *keyname)
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| 207 | {
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[2456] | 208 | if(keyname==NULL || fitsptr==NULL) return 0;
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[2453] | 209 | int sta=0; long val=0;
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| 210 | if(fits_read_key(fitsptr,TLONG,keyname,&val,NULL,&sta))
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| 211 | printerror(sta);
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| 212 | return val;
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| 213 | }
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| 214 |
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| 215 | /*!
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| 216 | Read a fitsheader key into string
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| 217 | \param fitsptr : cfitio pointer to Fits file
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| 218 | \param keyname : name of the key
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| 219 | \return value into string
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| 220 | */
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| 221 | string FitsOpenFile::ReadKeyS(fitsfile *fitsptr,char *keyname)
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| 222 | {
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[2456] | 223 | if(keyname==NULL || fitsptr==NULL) return (string)"";
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[2453] | 224 | int sta=0; char val[FLEN_VALUE];
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| 225 | if(fits_read_key(fitsptr,TSTRING,keyname,val,NULL,&sta))
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| 226 | printerror(sta);
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| 227 | string sval = val;
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| 228 | return sval;
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| 229 | }
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| 230 |
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| 231 | /*!
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| 232 | CFitsIO error printing routine
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| 233 | \param sta : cfitio error return code
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| 234 | */
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| 235 | void FitsOpenFile::printerror(int sta)
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[2449] | 236 | {
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| 237 | int stat = sta;
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| 238 | fits_report_error(stdout,stat);
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| 239 | fflush(stdout);
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| 240 | return;
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| 241 | }
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| 242 |
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| 243 | ///////////////////////////////////////////////////////////////////
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| 244 | ///////////////////////////////////////////////////////////////////
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| 245 | ///////////////////////////////////////////////////////////////////
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| 246 | ///////////////////////////////////////////////////////////////////
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| 247 |
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| 248 | ///////////////////////////////////////////////////////////////////
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[1654] | 249 | //! Class for reading a column in a FITS ASCII or BINARY table
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| 250 |
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| 251 | /*!
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[2449] | 252 | \class SOPHYA::FitsABTColRd
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[1654] | 253 | \ingroup FitsIOServer
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[2789] | 254 | Class for reading a column in a FITS ASCII or BINARY table.
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| 255 | You can read many columns of the same FITS table by instanciating
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| 256 | many FitsABTColRd on the same FitsOpenFile. So, the FITS file is
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| 257 | opened only once. Of course the various FitsABTColRd must read
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| 258 | the same FITS file HDU.
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[1654] | 259 | \verbatim
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[1659] | 260 | -- Exemple:
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[2449] | 261 | // Open the fits file with FitsOpenFile
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| 262 | FitsOpenFile fof = new FitsOpenFile("myfits.fits");
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| 263 | // Select the column to be read
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| 264 | FitsABTColRd fbt(fof,"BoloMuv_28",0,1000,1,3);
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[2456] | 265 | FitsABTColRd fbt2(fof,"BoloMuv_29",0,1000,1,3);
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[1654] | 266 | fbt.SetDebug(3);
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| 267 | fbt.Print(3);
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[1659] | 268 | // Read element by element
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[1654] | 269 | for(long i=0;i<fbt.GetNbLine();i++) {
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| 270 | double x = fbt.Read(i);
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[2456] | 271 | double y = fbt2.Read(i);
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| 272 | if(i%lpmod==0) cout<<i<<": "<<x<<", "<<y<<endl;
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[1654] | 273 | }
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[1659] | 274 | // Read into a vector
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| 275 | TVector<double> data;
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| 276 | long n = fbt.Read(32,50,data);
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| 277 | cout<<"Number of values read: "<<n<<endl;
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| 278 | data.ReSize(100);
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| 279 | n = fbt.Read(10,-1,data);
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| 280 | cout<<"Number of values read: "<<n<<endl;
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[2456] | 281 | TVector<double> data2;
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| 282 | fbt2.Read(32,50,data);
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[2449] | 283 | // Close the fits file
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| 284 | delete fof;
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[1654] | 285 | \endverbatim
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| 286 | */
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| 287 |
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| 288 | //////////////////////////////////////////////////////////////
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| 289 | /*!
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| 290 | Constructor.
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[2449] | 291 | \param fof : Pointer to the Class for opening the FITS file
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[1659] | 292 | \param collabel : label of the column to be read
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| 293 | \param ihdu : number of the HDU where the column is.
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| 294 | \param blen : read buffer length
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| 295 | \param bsens : buffer reading direction
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| 296 | \param lp : debug level
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[1654] | 297 | \verbatim
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[2456] | 298 | - if ihdu<=0 first BINARY or ASCII table is taken
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| 299 | - if ihdu>nhdu ihdu is set to nhdu
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[1659] | 300 | - bsens>0 read forward
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| 301 | bsens<0 read backward
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| 302 | bsens==0 read centered
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[1654] | 303 | \endverbatim
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[1659] | 304 | \warning ihdu = [1,nhdu]
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[1654] | 305 | */
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[2449] | 306 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,string collabel
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| 307 | ,int ihdu,long blen,long bsens,int lp)
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[1654] | 308 | {
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[2449] | 309 | Init(fof,collabel.c_str(),-1,ihdu,blen,bsens,lp);
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[1654] | 310 | }
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| 311 |
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| 312 | /*!
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| 313 | Constructor.
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[1659] | 314 | Same as before but the column is identified by its column number
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| 315 | \param colnum : number of the column to be read
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| 316 | \warning col = [0,ncol[
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[1654] | 317 | */
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[2449] | 318 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,int colnum
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| 319 | ,int ihdu,long blen,long bsens,int lp)
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[1654] | 320 | {
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[2449] | 321 | Init(fof,"",colnum,ihdu,blen,bsens,lp);
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[1654] | 322 | }
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| 323 |
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[2449] | 324 | /*! Constructor by copy */
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| 325 | FitsABTColRd::FitsABTColRd(FitsABTColRd& fbt)
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[1654] | 326 | {
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[2449] | 327 | Init(fbt.GetFitsOpenFile(),fbt.GetColLabel().c_str()
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[2456] | 328 | ,fbt.GetColNum(),fbt.HDU()
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[2449] | 329 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
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[1654] | 330 | }
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| 331 |
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[2449] | 332 | /*! Constructor by default */
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| 333 | FitsABTColRd::FitsABTColRd()
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[1654] | 334 | {
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[2449] | 335 | ColLabel = ""; ColTUnit = ""; ColTForm = "";
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| 336 | ColNum = -1; ColTypeCode = 0;
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| 337 | NBcol = 0; NBline = 0;
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| 338 | SetNulVal(); SetDebug(0);
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| 339 | NFitsRead = 0;
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[3114] | 340 | FitsOF = NULL;
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[2449] | 341 | LineDeb = LineFin = -1;
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| 342 | Buffer = NULL;
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[1654] | 343 | }
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| 344 |
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| 345 | /*! Init routine called by the constructor */
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[2449] | 346 | void FitsABTColRd::Init(FitsOpenFile* fof,const char* collabel,int colnum
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[1654] | 347 | ,int ihdu,long blen,long bsens,int lp)
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| 348 | {
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[2449] | 349 | // Initialisation des Parametres Generaux
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[2456] | 350 | ColLabel=collabel; ColTUnit=""; ColTForm=""; ColNum=colnum; ColTypeCode=0;
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| 351 | NBcol = 0; NBline = 0;
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| 352 | SetNulVal(); SetDebug(lp);
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[1654] | 353 | NFitsRead = 0;
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[3114] | 354 | FitsOF = NULL;
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[1654] | 355 | LineDeb = LineFin = -1;
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| 356 | Buffer = NULL;
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| 357 |
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[2449] | 358 | // Caracteristiques du FitsOpenFile
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| 359 | FitsOF = fof;
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[2456] | 360 | if(FitsOF==NULL)
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[2449] | 361 | throw NullPtrError("FitsABTColRd::Init: FitsOpenFile pointer is NULL\n");
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[2456] | 362 |
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[3114] | 363 | if(GetFitsPtr()==NULL)
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[2449] | 364 | throw NullPtrError("FitsABTColRd::Init: FitsPtr pointer is NULL\n");
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[1654] | 365 |
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[2449] | 366 | int sta = 0;
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[2456] | 367 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
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[2449] | 368 |
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[1654] | 369 | // Get HDU for bin/ascii table
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[2456] | 370 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU,
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| 371 | // une classe utilisant ce fichier doit le positionner sur un HDU.
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| 372 | // Par contre, si une autre classe utilise ce meme FitsOpenFile,
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| 373 | // elle ne peut le positionner que sur ce meme HDU !
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| 374 | if(FitsOF->GetPosStatus()==false) {
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| 375 | if(ihdu==0) { // find the first BINARY then the first ASCII
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| 376 | int rc = FitsOF->MoveToFirst(BINARY_TBL);
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| 377 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL);
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| 378 | } else {
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| 379 | int rc = FitsOF->MoveToHDU(ihdu);
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| 380 | if(rc!=ihdu)
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| 381 | throw RangeCheckError("FitsABTColRd::Init: Error moving to requested HDU\n");
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[1654] | 382 | }
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[2456] | 383 | } else { // Fits file has already been positionned
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| 384 | if(ihdu>0 && ihdu!=HDU())
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| 385 | throw RangeCheckError("FitsABTColRd::Init: file already posit. at another HDU\n");
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[1654] | 386 | }
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[2456] | 387 |
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| 388 | // Check HDUType and set position status to TRUE
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| 389 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL)
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[2449] | 390 | throw TypeMismatchExc("FitsABTColRd::Init: HDU not ASCII/BINARY table\n");
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[2456] | 391 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl;
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| 392 | FitsOF->SetPosStatus(true);
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[1654] | 393 |
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| 394 | // Get number of columns
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[3114] | 395 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) {
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[2456] | 396 | FitsOpenFile::printerror(sta);
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[2449] | 397 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of columns\n");
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---|
[1654] | 398 | }
|
---|
| 399 | if(DbgLevel>1) cout<<"...Init NBcol="<<NBcol<<endl;
|
---|
[2456] | 400 | if(NBcol<1)
|
---|
[2449] | 401 | throw RangeCheckError("FitsABTColRd::Init: Bad number of colums\n");
|
---|
[1654] | 402 |
|
---|
| 403 | // Get number of rows
|
---|
[3114] | 404 | if(fits_get_num_rows(GetFitsPtr(),&NBline,&sta)) {
|
---|
[2456] | 405 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 406 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of rows\n");
|
---|
[1654] | 407 | }
|
---|
| 408 | if(DbgLevel>1) cout<<"...Init NBline="<<NBline<<endl;
|
---|
[2456] | 409 | if(NBline<1)
|
---|
[2449] | 410 | throw RangeCheckError("FitsABTColRd::Init: Bad number of rows\n");
|
---|
[1654] | 411 |
|
---|
| 412 | // Get column number
|
---|
[1660] | 413 | char labelcol[128];
|
---|
[1654] | 414 | if(ColLabel.size() > 0) {
|
---|
| 415 | strcpy(labelcol,ColLabel.c_str());
|
---|
[3114] | 416 | if(fits_get_colnum(GetFitsPtr(),CASESEN,labelcol,&ColNum,&sta)) {
|
---|
[2456] | 417 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 418 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting column name\n");
|
---|
[1654] | 419 | }
|
---|
| 420 | ColNum--; // Convention [0,ncol[
|
---|
| 421 | }
|
---|
| 422 | if(DbgLevel>1) cout<<"...Init ColNum="<<ColNum<<endl;
|
---|
[2456] | 423 | if(ColNum<0 || ColNum>=NBcol)
|
---|
[2449] | 424 | throw RangeCheckError("FitsABTColRd::Init: Bad column number\n");
|
---|
[1654] | 425 |
|
---|
| 426 | // Get column type
|
---|
[3114] | 427 | if(fits_get_coltype(GetFitsPtr(),ColNum+1,&ColTypeCode,NULL,NULL,&sta)) {
|
---|
[2456] | 428 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 429 | throw ParmError("FitsABTColRd::Init: Error getting column type\n");
|
---|
[1654] | 430 | }
|
---|
| 431 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode<<endl;
|
---|
[1660] | 432 | if(ColTypeCode==TSTRING || ColTypeCode==TCOMPLEX || ColTypeCode==TDBLCOMPLEX
|
---|
[2456] | 433 | || ColTypeCode<0 )
|
---|
[2449] | 434 | throw ParmError("FitsABTColRd::Init: Selected column is not Numerical\n");
|
---|
[1654] | 435 |
|
---|
| 436 | // Get column name back, tunit, tform
|
---|
[2174] | 437 | char tunit[64], tform[64], tdisp[64];
|
---|
[2173] | 438 | long repeat=0; double tscale=1., tzero=0.;
|
---|
[1654] | 439 | int rc=0;
|
---|
[2456] | 440 | if(HDUType()==BINARY_TBL) {
|
---|
[3114] | 441 | fits_get_bcolparms(GetFitsPtr(),ColNum+1,labelcol,tunit,tform
|
---|
[2174] | 442 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
[1654] | 443 | } else {
|
---|
[3114] | 444 | fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeat,tunit,tform
|
---|
[2174] | 445 | ,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
[1654] | 446 | }
|
---|
| 447 | if(rc) {
|
---|
[2456] | 448 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 449 | throw RangeCheckError("FitsABTColRd::Init: Error getting the column caracteristics\n");
|
---|
[1654] | 450 | }
|
---|
| 451 | ColLabel = labelcol;
|
---|
| 452 | ColTUnit = tunit;
|
---|
| 453 | ColTForm = tform;
|
---|
| 454 |
|
---|
[2456] | 455 | // Set the buffer for reading
|
---|
| 456 | ChangeBuffer(blen,bsens);
|
---|
| 457 |
|
---|
[1654] | 458 | if(DbgLevel)
|
---|
[2449] | 459 | cout<<"FitsABTColRd::Init Num="<<ColNum<<" Label="<<ColLabel
|
---|
[2173] | 460 | <<" TypeCode="<<ColTypeCode<<" TUnit="<<ColTUnit<<" TForm="<<ColTForm<<endl;
|
---|
| 461 | if(DbgLevel>1)
|
---|
[2174] | 462 | cout<<" (repeat="<<repeat<<",tscale="<<tscale<<",tzero="<<tzero
|
---|
| 463 | <<",tdisp="<<tdisp<<")"<<endl;
|
---|
[1654] | 464 |
|
---|
| 465 | }
|
---|
| 466 |
|
---|
| 467 | /*! Destructor. */
|
---|
[2449] | 468 | FitsABTColRd::~FitsABTColRd()
|
---|
[1654] | 469 | {
|
---|
| 470 | Delete();
|
---|
| 471 | }
|
---|
| 472 |
|
---|
[2449] | 473 | /*! Delete called by the destructor */
|
---|
| 474 | void FitsABTColRd::Delete(void)
|
---|
[1814] | 475 | {
|
---|
[2449] | 476 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;}
|
---|
| 477 | LineDeb = LineFin = -1;
|
---|
| 478 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
[1814] | 479 | }
|
---|
[1654] | 480 |
|
---|
| 481 | //////////////////////////////////////////////////////////////
|
---|
[1659] | 482 | /*! Change the buffer caracteristiques (see creator) */
|
---|
[2449] | 483 | void FitsABTColRd::ChangeBuffer(long blen,long bsens)
|
---|
[1654] | 484 | {
|
---|
[1657] | 485 | long oldnbuffer = NBuffer;
|
---|
| 486 |
|
---|
| 487 | // Compute buffer caracteristics
|
---|
[1654] | 488 | BuffLen = (blen<=0)? 1: blen;
|
---|
| 489 | BuffSens = bsens;
|
---|
[1657] | 490 | NBuffer = BuffLen;
|
---|
| 491 | if(bsens==0 && NBuffer%2==0) NBuffer++;
|
---|
[1654] | 492 |
|
---|
[1657] | 493 | // De-allocate if necessary
|
---|
[1659] | 494 | if(Buffer!=NULL) {
|
---|
| 495 | // On des-alloue si pas assez de place
|
---|
| 496 | // ou si l'ancienne place est beaucoup trop grande (>25%)
|
---|
| 497 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) )
|
---|
| 498 | {delete [] Buffer; Buffer=NULL;}
|
---|
| 499 | }
|
---|
[1654] | 500 |
|
---|
[1657] | 501 | // Re-allocate
|
---|
| 502 | if(Buffer==NULL) Buffer = new double[NBuffer];
|
---|
| 503 |
|
---|
[1654] | 504 | // Tell program that nothing is into buffer
|
---|
| 505 | LineDeb = LineFin = -1;
|
---|
| 506 | }
|
---|
| 507 |
|
---|
[2449] | 508 | //////////////////////////////////////////////////////////////
|
---|
[2451] | 509 | /*!
|
---|
| 510 | Read a fitsheader key into double
|
---|
| 511 | \param keyname : name of the key
|
---|
| 512 | \return value into double
|
---|
| 513 | */
|
---|
[2449] | 514 | double FitsABTColRd::ReadKey(char *keyname)
|
---|
[1654] | 515 | {
|
---|
[3114] | 516 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
[1654] | 517 | }
|
---|
| 518 |
|
---|
[2451] | 519 | /*!
|
---|
| 520 | Read a fitsheader key into long
|
---|
| 521 | \param keyname : name of the key
|
---|
| 522 | \return value into long
|
---|
| 523 | */
|
---|
| 524 | long FitsABTColRd::ReadKeyL(char *keyname)
|
---|
| 525 | {
|
---|
[3114] | 526 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
[2451] | 527 | }
|
---|
| 528 |
|
---|
| 529 | /*!
|
---|
| 530 | Read a fitsheader key into string
|
---|
| 531 | \param keyname : name of the key
|
---|
| 532 | \return value into string
|
---|
| 533 | */
|
---|
| 534 | string FitsABTColRd::ReadKeyS(char *keyname)
|
---|
| 535 | {
|
---|
[3114] | 536 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
[2451] | 537 | }
|
---|
| 538 |
|
---|
[1654] | 539 | /////////////////////////////////////////////////
|
---|
| 540 | /*!
|
---|
[1659] | 541 | Read row "n" and return the value into a double
|
---|
| 542 | \warning be carefull for the range: row = [0,NRows[
|
---|
| 543 | \return value in double
|
---|
| 544 | \param n : number of the row to be read.
|
---|
[1654] | 545 | \verbatim
|
---|
[1659] | 546 | usebuffer == true : use read optimisation with bufferisation
|
---|
| 547 | == false : no optimisation with bufferisation
|
---|
| 548 | just read one value
|
---|
[1654] | 549 | \endverbatim
|
---|
| 550 | */
|
---|
[2449] | 551 | double FitsABTColRd::Read(long n,bool usebuffer)
|
---|
[1654] | 552 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline]
|
---|
| 553 | // Attention: colnum [0,NBcol[ , cfistio veut [1,NBcol]
|
---|
| 554 | {
|
---|
[1659] | 555 | int sta=0;
|
---|
[1654] | 556 | if(n<0 || n>=NBline)
|
---|
[2449] | 557 | throw RangeCheckError("FitsABTColRd::Read try to read outside line range\n");
|
---|
[1654] | 558 |
|
---|
| 559 | // Pas de bufferisation, on lit betement
|
---|
[1659] | 560 | if(NBuffer==1 || !usebuffer) {
|
---|
[1654] | 561 | NFitsRead++;
|
---|
[1659] | 562 | double val;
|
---|
[3114] | 563 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,1,1,NULL,&val,NULL,&sta);
|
---|
[1654] | 564 | if(sta) {
|
---|
[2453] | 565 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 566 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
[1654] | 567 | }
|
---|
[1659] | 568 | // On ne remplit Buffer[0] que si on a choisit
|
---|
| 569 | // un mode de lecture non bufferise (n==1) DES LE DEBUT.
|
---|
| 570 | // Si on a initialement choisit un mode bufferise (avec n>1),
|
---|
| 571 | // Buffer contient les valeurs chargees auparavent.
|
---|
| 572 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
| 573 | // car on perd l'info de ces valeurs.
|
---|
| 574 | if(NBuffer==1) {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
| 575 | return val;
|
---|
[1654] | 576 | }
|
---|
| 577 |
|
---|
| 578 | // Gestion avec bufferisation
|
---|
[1659] | 579 | if(!Buffer)
|
---|
[2449] | 580 | throw RangeCheckError("FitsABTColRd::Read: Buffer not allocated\n");
|
---|
[1654] | 581 | if(n<LineDeb || n>LineFin) {
|
---|
| 582 | NFitsRead++;
|
---|
| 583 | long row1,row2,nrow;
|
---|
| 584 | if(BuffSens>0) { // Cas remplissage forward
|
---|
| 585 | row1 = n+1;
|
---|
[1657] | 586 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline;
|
---|
[1654] | 587 | } else if(BuffSens<0) { // Cas remplissage backward
|
---|
| 588 | row2 = n+1;
|
---|
[1657] | 589 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1;
|
---|
[1654] | 590 | } else { // Cas remplissage centre
|
---|
[1657] | 591 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1;
|
---|
| 592 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline;
|
---|
[1654] | 593 | }
|
---|
| 594 | nrow = row2 - row1 + 1;
|
---|
| 595 | LineDeb = row1-1; LineFin = row2-1;
|
---|
| 596 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow
|
---|
| 597 | // <<" LineDeb,Fin="<<LineDeb<<","<<LineFin<<endl;
|
---|
[3114] | 598 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer,NULL,&sta);
|
---|
[1654] | 599 | if(sta) {
|
---|
[2453] | 600 | FitsOpenFile::printerror(sta);
|
---|
[1654] | 601 | LineDeb = LineFin = -1;
|
---|
[2449] | 602 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
[1654] | 603 | }
|
---|
| 604 | }
|
---|
| 605 |
|
---|
| 606 | long ibuf = n-LineDeb;
|
---|
| 607 | return Buffer[ibuf];
|
---|
| 608 | }
|
---|
| 609 |
|
---|
| 610 | /*!
|
---|
[1659] | 611 | Read rows from "n1" to "n2" and return the values into TVector of double
|
---|
| 612 | \return NREAD the number of values read (n2-n1+1).
|
---|
| 613 | \warning row = [0,NRows[, the routine read [n1,n2]
|
---|
[1654] | 614 | \verbatim
|
---|
[1659] | 615 | - if n2<0 then read [n1,n2] where "n2=min(n1+vector_size-1,nrows-1)"
|
---|
| 616 | - Last row read is ALWAYS: "n2 = n1 + NREAD -1"
|
---|
| 617 | - The TVector is never resized if not necessary
|
---|
| 618 | -------------------------------------------------------------------------
|
---|
| 619 | - ex: suppose the column table contains 10 elements: nrows=10, rows=[0,9]
|
---|
| 620 |
|
---|
| 621 | TVector<double> V(5);
|
---|
| 622 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==5 -> return 3
|
---|
| 623 | bt.Read(3,-1,V) -> read rows=3,4,5,6,7 -> V.Size()==5 -> return 5
|
---|
| 624 | bt.Read(7,-1,V) -> read rows=7,8,9 -> V.Size()==5 -> return 3
|
---|
| 625 | bt.Read(2,-1,V) -> read rows=2,3,4,5,6 -> V.Size()==5 -> return 5
|
---|
| 626 | bt.Read(-1,5,V) -> throw exception
|
---|
| 627 |
|
---|
| 628 | TVector<double> V(5);
|
---|
| 629 | bt.Read(3,99,V) -> read rows=3,4,5,6,7,8,9 -> V.Size()==7 -> return 7
|
---|
| 630 |
|
---|
| 631 | TVector<double> V(5);
|
---|
| 632 | bt.Read(2,8,V) -> read rows=2,3,4,5,6,7,8 -> V.Size()==7 -> return 7
|
---|
| 633 |
|
---|
| 634 | TVector<double> V;
|
---|
| 635 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==3 -> return 3
|
---|
| 636 |
|
---|
| 637 | TVector<double> V;
|
---|
| 638 | bt.Read(3,-1,V) -> throw exception
|
---|
| 639 | -------------------------------------------------------------------------
|
---|
[1654] | 640 | \endverbatim
|
---|
| 641 | */
|
---|
[2449] | 642 | long FitsABTColRd::Read(long n1,long n2,TVector<double>& data)
|
---|
[1654] | 643 | {
|
---|
[1659] | 644 | if(n1<0 || n1>=NBline)
|
---|
[2449] | 645 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
[1659] | 646 | if(data.Size()<=0 && n2<n1)
|
---|
[2449] | 647 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
[1659] | 648 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
| 649 | if(n2>=NBline) n2 = NBline-1;
|
---|
[1654] | 650 |
|
---|
[1659] | 651 | sa_size_t nread = n2-n1+1;
|
---|
| 652 | if(data.Size()<nread) data.SetSize(nread);
|
---|
| 653 |
|
---|
| 654 | //for(long i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
| 655 | int sta=0;
|
---|
[3114] | 656 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
[1659] | 657 | if(sta) {
|
---|
[2453] | 658 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 659 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<double>: Error Reading Fits file\n");
|
---|
[1659] | 660 | }
|
---|
| 661 |
|
---|
| 662 | return nread;
|
---|
[1654] | 663 | }
|
---|
| 664 |
|
---|
[1659] | 665 | /*! idem before but for TVector of float */
|
---|
[2449] | 666 | long FitsABTColRd::Read(long n1,long n2,TVector<float>& data)
|
---|
[1659] | 667 | {
|
---|
| 668 | if(n1<0 || n1>=NBline)
|
---|
[2449] | 669 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
[1659] | 670 | if(data.Size()<=0 && n2<n1)
|
---|
[2449] | 671 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
[1659] | 672 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
| 673 | if(n2>=NBline) n2 = NBline-1;
|
---|
| 674 |
|
---|
| 675 | sa_size_t nread = n2-n1+1;
|
---|
| 676 | if(data.Size()<nread) data.SetSize(nread);
|
---|
| 677 |
|
---|
| 678 | //for(long i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
| 679 | int sta=0;
|
---|
[3114] | 680 | fits_read_col(GetFitsPtr(),TFLOAT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
[1659] | 681 | if(sta) {
|
---|
[2453] | 682 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 683 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<float>: Error Reading Fits file\n");
|
---|
[1659] | 684 | }
|
---|
| 685 |
|
---|
| 686 | return nread;
|
---|
| 687 | }
|
---|
| 688 |
|
---|
[2170] | 689 | /*! idem before but for TVector of unsigned short */
|
---|
[2449] | 690 | long FitsABTColRd::Read(long n1,long n2,TVector<uint_2>& data)
|
---|
[2170] | 691 | {
|
---|
| 692 | if(n1<0 || n1>=NBline)
|
---|
[2449] | 693 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
[2170] | 694 | if(data.Size()<=0 && n2<n1)
|
---|
[2449] | 695 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
[2170] | 696 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
| 697 | if(n2>=NBline) n2 = NBline-1;
|
---|
| 698 |
|
---|
| 699 | sa_size_t nread = n2-n1+1;
|
---|
| 700 | if(data.Size()<nread) data.SetSize(nread);
|
---|
| 701 |
|
---|
| 702 | int sta=0;
|
---|
[3114] | 703 | fits_read_col(GetFitsPtr(),TUSHORT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
[2170] | 704 | if(sta) {
|
---|
[2453] | 705 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 706 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<uint_2>: Error Reading Fits file\n");
|
---|
[2170] | 707 | }
|
---|
| 708 |
|
---|
| 709 | return nread;
|
---|
| 710 | }
|
---|
| 711 |
|
---|
[1659] | 712 | /*! idem before but for TVector of int_4 */
|
---|
[2449] | 713 | long FitsABTColRd::Read(long n1,long n2,TVector<int_4>& data)
|
---|
[1659] | 714 | {
|
---|
| 715 | if(n1<0 || n1>=NBline)
|
---|
[2449] | 716 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
[1659] | 717 | if(data.Size()<=0 && n2<n1)
|
---|
[2449] | 718 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
[1659] | 719 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
| 720 | if(n2>=NBline) n2 = NBline-1;
|
---|
| 721 |
|
---|
| 722 | sa_size_t nread = n2-n1+1;
|
---|
| 723 | if(data.Size()<nread) data.SetSize(nread);
|
---|
| 724 |
|
---|
| 725 | //for(long i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
| 726 | int sta=0;
|
---|
| 727 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
[3114] | 728 | fits_read_col(GetFitsPtr(),T,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
[1659] | 729 | if(sta) {
|
---|
[2453] | 730 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 731 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_4>: Error Reading Fits file\n");
|
---|
[1659] | 732 | }
|
---|
| 733 |
|
---|
| 734 | return nread;
|
---|
| 735 | }
|
---|
| 736 |
|
---|
[2169] | 737 | /*! idem before but for TVector of int_8 */
|
---|
[2449] | 738 | long FitsABTColRd::Read(long n1,long n2,TVector<int_8>& data)
|
---|
[2169] | 739 | {
|
---|
| 740 | #ifdef TLONGLONG
|
---|
| 741 | if(n1<0 || n1>=NBline)
|
---|
[2449] | 742 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
[2169] | 743 | if(data.Size()<=0 && n2<n1)
|
---|
[2449] | 744 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
[2169] | 745 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
| 746 | if(n2>=NBline) n2 = NBline-1;
|
---|
| 747 |
|
---|
| 748 | sa_size_t nread = n2-n1+1;
|
---|
| 749 | if(data.Size()<nread) data.SetSize(nread);
|
---|
| 750 |
|
---|
| 751 | int sta=0;
|
---|
[3114] | 752 | fits_read_col(GetFitsPtr(),TLONGLONG,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
[2169] | 753 | if(sta) {
|
---|
[2453] | 754 | FitsOpenFile::printerror(sta);
|
---|
[2449] | 755 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_8>: Error Reading Fits file\n");
|
---|
[2169] | 756 | }
|
---|
| 757 |
|
---|
| 758 | return nread;
|
---|
| 759 | #else
|
---|
[2449] | 760 | throw PException("FitsABTColRd::Read(..,TVector<int_8>&) Not in that cfitsio version");
|
---|
[2169] | 761 | #endif
|
---|
| 762 | }
|
---|
| 763 |
|
---|
[1654] | 764 | /////////////////////////////////////////////////
|
---|
[1659] | 765 | /*!
|
---|
| 766 | Return the number of the first row where "val1"<=val<="val2" starting at row "rowstart"
|
---|
| 767 | \verbatim
|
---|
| 768 | - The search is performed from "rowstart" to the end
|
---|
| 769 | in ascending order (from "rowstart" to nrows).
|
---|
| 770 | - Warning: "rowstart<0" means "rowstart==0" (search all the table column)
|
---|
| 771 | That is the default
|
---|
| 772 | \endverbatim
|
---|
| 773 | \return <0 means not found
|
---|
| 774 | */
|
---|
[2449] | 775 | long FitsABTColRd::FirstRow(double val1,double val2,long rowstart)
|
---|
[1659] | 776 | {
|
---|
| 777 | long row = -1;
|
---|
| 778 | if(NBline==0) return row;
|
---|
| 779 | // Change buffer for efficiency
|
---|
| 780 | long bsens=BuffSens; bool bchange=false;
|
---|
| 781 | if(bsens<=0) {ChangeBuffer(BuffLen,1); bchange=true;}
|
---|
| 782 | if(rowstart<0) rowstart = 0;
|
---|
| 783 | if(rowstart>=NBline) rowstart = NBline-1;
|
---|
| 784 | for(long i=rowstart;i<NBline;i++) {
|
---|
| 785 | double val = Read(i);
|
---|
| 786 | if(val<val1 || val>val2) continue;
|
---|
| 787 | row = i;
|
---|
| 788 | break;
|
---|
| 789 | }
|
---|
| 790 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
| 791 | return row;
|
---|
| 792 | }
|
---|
| 793 |
|
---|
| 794 | /*!
|
---|
| 795 | Return the number of the first row where val1<=val<=val2 starting at row rowstart
|
---|
| 796 | \return <0 means not found
|
---|
| 797 | \verbatim
|
---|
| 798 | - The search is performed from "rowstart" to the beginning
|
---|
| 799 | in descending order (from "rowstart" to 0).
|
---|
| 800 | - Warning: "rowstart<0" means "rowstart==nrows-1" (search all the table column)
|
---|
| 801 | That is the default
|
---|
| 802 | \endverbatim
|
---|
| 803 | */
|
---|
[2449] | 804 | long FitsABTColRd::LastRow(double val1,double val2,long rowstart)
|
---|
[1659] | 805 | {
|
---|
| 806 | long row = -1;
|
---|
| 807 | if(NBline==0) return row;
|
---|
| 808 | // Change buffer for efficiency
|
---|
| 809 | long bsens=BuffSens; bool bchange=false;
|
---|
| 810 | if(bsens>=0) {ChangeBuffer(BuffLen,-1); bchange=true;}
|
---|
| 811 | if(rowstart<0 || rowstart>=NBline) rowstart = NBline-1;
|
---|
| 812 | for(long i=rowstart;i>=0;i--) {
|
---|
| 813 | double val = Read(i);
|
---|
| 814 | if(val<val1 || val>val2) continue;
|
---|
| 815 | row = i;
|
---|
| 816 | break;
|
---|
| 817 | }
|
---|
| 818 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
| 819 | return row;
|
---|
| 820 | }
|
---|
| 821 |
|
---|
[1654] | 822 | /*! Print on stream os */
|
---|
[2449] | 823 | void FitsABTColRd::Print(ostream& os,int lp) const
|
---|
[1654] | 824 | {
|
---|
[2449] | 825 | os<<"FitsABTColRd:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")"
|
---|
[1654] | 826 | <<" ncols="<<NBcol<<" nrows="<<NBline;
|
---|
| 827 | if(lp>0) os<<" NRead="<<NFitsRead;
|
---|
[2456] | 828 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"
|
---|
| 829 | <<"\n... Label["<<ColNum<<"]="<<ColLabel<<" TypeCode="<<ColTypeCode
|
---|
[1654] | 830 | <<" TUnit="<<ColTUnit<<" TForm="<<ColTForm
|
---|
| 831 | <<endl;
|
---|
| 832 | }
|
---|
[2449] | 833 |
|
---|
| 834 | ///////////////////////////////////////////////////////////////////
|
---|
| 835 | ///////////////////////////////////////////////////////////////////
|
---|
| 836 | ///////////////////////////////////////////////////////////////////
|
---|
| 837 | ///////////////////////////////////////////////////////////////////
|
---|
| 838 |
|
---|
| 839 | //! Class for reading a column in a FITS ASCII or BINARY table with fits file opening
|
---|
| 840 |
|
---|
| 841 | /*!
|
---|
| 842 | \class SOPHYA::FitsABTColRead
|
---|
| 843 | \ingroup FitsIOServer
|
---|
[2789] | 844 | Class for reading a column in a FITS ASCII or BINARY table with fits file opening.
|
---|
| 845 | The FITS file is opened each time you instanciate a FitsABTColRead.
|
---|
| 846 | So reading "n" columns of the same FITS table by instanciating "n"
|
---|
| 847 | FitsABTColRead, will open "n" times te FITS file.
|
---|
| 848 | Use FitsABTColRd if you want to open the FITS file only once.
|
---|
[2449] | 849 | \verbatim
|
---|
| 850 | -- Exemple:
|
---|
| 851 | FitsABTColRead fbt("myfits.fits","BoloMuv_28",0,1000,1,3);
|
---|
| 852 | fbt.SetDebug(3);
|
---|
| 853 | fbt.Print(3);
|
---|
| 854 | // Read element by element
|
---|
| 855 | for(long i=0;i<fbt.GetNbLine();i++) {
|
---|
| 856 | double x = fbt.Read(i);
|
---|
| 857 | if(i%lpmod==0) cout<<i<<": "<<x<<endl;
|
---|
| 858 | }
|
---|
| 859 | // Read into a vector
|
---|
| 860 | TVector<double> data;
|
---|
| 861 | long n = fbt.Read(32,50,data);
|
---|
| 862 | cout<<"Number of values read: "<<n<<endl;
|
---|
| 863 | data.ReSize(100);
|
---|
| 864 | n = fbt.Read(10,-1,data);
|
---|
| 865 | cout<<"Number of values read: "<<n<<endl;
|
---|
| 866 | \endverbatim
|
---|
| 867 | */
|
---|
| 868 |
|
---|
| 869 |
|
---|
| 870 | //////////////////////////////////////////////////////////////
|
---|
| 871 | /*!
|
---|
| 872 | Constructor.
|
---|
| 873 | \param fname : FITS file name to be read
|
---|
| 874 | \param collabel : label of the column to be read
|
---|
| 875 | \param ihdu : number of the HDU where the column is.
|
---|
| 876 | \param blen : read buffer length
|
---|
| 877 | \param bsens : buffer reading direction
|
---|
| 878 | \param lp : debug level
|
---|
| 879 | \verbatim
|
---|
[2456] | 880 | - if ihdu<=0 first BINARY or ASCII table is taken
|
---|
| 881 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
[2449] | 882 | - bsens>0 read forward
|
---|
| 883 | bsens<0 read backward
|
---|
| 884 | bsens==0 read centered
|
---|
| 885 | \endverbatim
|
---|
| 886 | \warning ihdu = [1,nhdu]
|
---|
| 887 | */
|
---|
| 888 | FitsABTColRead::FitsABTColRead(string fname,string collabel
|
---|
| 889 | ,int ihdu,long blen,long bsens,int lp)
|
---|
| 890 | : FitsABTColRd(new FitsOpenFile(fname),collabel,ihdu,blen,bsens,lp)
|
---|
| 891 | {
|
---|
| 892 | }
|
---|
| 893 |
|
---|
| 894 | /*!
|
---|
| 895 | Constructor.
|
---|
| 896 | Same as before but the column is identified by its column number
|
---|
| 897 | \param colnum : number of the column to be read
|
---|
| 898 | \warning col = [0,ncol[
|
---|
| 899 | */
|
---|
| 900 | FitsABTColRead::FitsABTColRead(string fname,int colnum
|
---|
| 901 | ,int ihdu,long blen,long bsens,int lp)
|
---|
| 902 | : FitsABTColRd(new FitsOpenFile(fname),colnum,ihdu,blen,bsens,lp)
|
---|
| 903 | {
|
---|
| 904 | }
|
---|
| 905 |
|
---|
| 906 | /*! Constructor. see below */
|
---|
| 907 | FitsABTColRead::FitsABTColRead(const char * cfname,const char* collabel
|
---|
| 908 | ,int ihdu,long blen,long bsens,int lp)
|
---|
| 909 | : FitsABTColRd(new FitsOpenFile(cfname),collabel,ihdu,blen,bsens,lp)
|
---|
| 910 | {
|
---|
| 911 | }
|
---|
| 912 |
|
---|
| 913 | /*! Constructor. see below */
|
---|
| 914 | FitsABTColRead::FitsABTColRead(const char * cfname,int colnum
|
---|
| 915 | ,int ihdu,long blen,long bsens,int lp)
|
---|
| 916 | : FitsABTColRd(new FitsOpenFile(cfname),colnum,ihdu,blen,bsens,lp)
|
---|
| 917 | {
|
---|
| 918 | }
|
---|
| 919 | /*! Constructor by default */
|
---|
| 920 | FitsABTColRead::FitsABTColRead()
|
---|
[2791] | 921 | : FitsABTColRd()
|
---|
[2449] | 922 | {
|
---|
| 923 | }
|
---|
| 924 |
|
---|
| 925 | /*! Constructor by copy */
|
---|
| 926 | FitsABTColRead::FitsABTColRead(FitsABTColRead& fbt)
|
---|
| 927 | {
|
---|
| 928 | // --- ATTENTION ---
|
---|
| 929 | // FitsABTColRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
| 930 | FitsOpenFile* fof = new FitsOpenFile(*fbt.GetFitsOpenFile());
|
---|
| 931 | Init(fof,fbt.GetColLabel().c_str()
|
---|
[2456] | 932 | ,fbt.GetColNum(),fbt.HDU()
|
---|
[2449] | 933 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
|
---|
| 934 | }
|
---|
| 935 |
|
---|
| 936 | /*! Destructor. */
|
---|
| 937 | FitsABTColRead::~FitsABTColRead()
|
---|
| 938 | {
|
---|
[2789] | 939 | Delete(); // ?? inutile ??
|
---|
| 940 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
[2449] | 941 | if(FitsOF!=NULL) delete FitsOF;
|
---|
| 942 | }
|
---|
[2453] | 943 |
|
---|
| 944 | ///////////////////////////////////////////////////////////////////
|
---|
[2791] | 945 | ///////////////////////////////////////////////////////////////////
|
---|
| 946 | ///////////////////////////////////////////////////////////////////
|
---|
| 947 | ///////////////////////////////////////////////////////////////////
|
---|
| 948 |
|
---|
[2453] | 949 | //! Class for reading a 2D image from a FITS file
|
---|
| 950 |
|
---|
| 951 | /*!
|
---|
| 952 | \class SOPHYA::FitsImg2DRd
|
---|
| 953 | \ingroup FitsIOServer
|
---|
| 954 | Class for reading a 2D image from a FITS file
|
---|
| 955 | */
|
---|
| 956 |
|
---|
| 957 | //////////////////////////////////////////////////////////////
|
---|
| 958 | /*!
|
---|
| 959 | Constructor.
|
---|
| 960 | \param fof : Pointer to the Class for opening the FITS file
|
---|
[2456] | 961 | \param ihdu : number of the HDU where the image is.
|
---|
[2453] | 962 | \param lp : debug level
|
---|
| 963 | \verbatim
|
---|
[2456] | 964 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
| 965 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
[2453] | 966 | \endverbatim
|
---|
| 967 | \warning ihdu = [1,nhdu]
|
---|
| 968 | */
|
---|
| 969 | FitsImg2DRd::FitsImg2DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
| 970 | {
|
---|
| 971 | Init(fof,ihdu,lp);
|
---|
| 972 | }
|
---|
| 973 |
|
---|
| 974 | /*! Constructor by copy */
|
---|
| 975 | FitsImg2DRd::FitsImg2DRd(FitsImg2DRd& fbt)
|
---|
| 976 | {
|
---|
[2456] | 977 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
[2453] | 978 | }
|
---|
| 979 |
|
---|
| 980 | /*! Constructor by default */
|
---|
| 981 | FitsImg2DRd::FitsImg2DRd()
|
---|
| 982 | {
|
---|
| 983 | Naxis[0] = Naxis[1] = 0;
|
---|
| 984 | SetNulVal(); SetDebug(0);
|
---|
[3114] | 985 | FitsOF = NULL;
|
---|
[2453] | 986 | }
|
---|
| 987 |
|
---|
| 988 | /*! Init routine called by the constructor */
|
---|
| 989 | void FitsImg2DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
| 990 | {
|
---|
| 991 | // Initialisation des Parametres Generaux
|
---|
| 992 | Naxis[0] = Naxis[1] = 0;
|
---|
| 993 | SetNulVal(); SetDebug(lp);
|
---|
[3114] | 994 | FitsOF = NULL;
|
---|
[2453] | 995 |
|
---|
| 996 | // Caracteristiques du FitsOpenFile
|
---|
| 997 | FitsOF = fof;
|
---|
| 998 | if(FitsOF==NULL)
|
---|
| 999 | throw NullPtrError("FitsImg2DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
[2456] | 1000 |
|
---|
[3114] | 1001 | if(GetFitsPtr()==NULL)
|
---|
[2453] | 1002 | throw NullPtrError("FitsImg2DRd::Init: FitsPtr pointer is NULL\n");
|
---|
| 1003 |
|
---|
| 1004 | int sta = 0;
|
---|
[2456] | 1005 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
[2453] | 1006 |
|
---|
| 1007 | // Get HDU 2D image
|
---|
[2456] | 1008 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
| 1009 | if(FitsOF->GetPosStatus()==false) {
|
---|
| 1010 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
| 1011 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
| 1012 | } else {
|
---|
| 1013 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
| 1014 | if(rc!=ihdu)
|
---|
[3114] | 1015 | throw RangeCheckError("FitsImg2DRd::Init: Error moving to requested HDU\n");
|
---|
[2453] | 1016 | }
|
---|
[2456] | 1017 | } else { // Fits file has already been positionned
|
---|
| 1018 | if(ihdu>0 && ihdu!=HDU())
|
---|
[3114] | 1019 | throw RangeCheckError("FitsImg2DRd::Init: file already posit. at another HDU\n");
|
---|
[2453] | 1020 | }
|
---|
[2456] | 1021 |
|
---|
| 1022 | // Check HDUType and set position status to TRUE
|
---|
| 1023 | if(HDUType()!=IMAGE_HDU)
|
---|
[2453] | 1024 | throw TypeMismatchExc("FitsImg2DRd::Init: HDU not IMAGE_HDU\n");
|
---|
[2456] | 1025 | FitsOF->SetPosStatus(true);
|
---|
[2453] | 1026 |
|
---|
| 1027 | // Get NAXIS 1 et 2
|
---|
| 1028 | int nfound=0;
|
---|
[3114] | 1029 | if(fits_read_keys_lng(GetFitsPtr(),"NAXIS",1,2,Naxis,&nfound,&sta)) {
|
---|
[2453] | 1030 | FitsOpenFile::printerror(sta);
|
---|
| 1031 | throw RangeCheckError("FitsImg2DRd::Init: Error reading NAXIS cards\n");
|
---|
| 1032 | }
|
---|
| 1033 | if(DbgLevel>1)
|
---|
[2456] | 1034 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
| 1035 | <<Naxis[1]<<" (nfound="<<nfound<<")"<<endl;
|
---|
[2453] | 1036 | if(nfound!=2 || Naxis[0]<=0 || Naxis[1]<=0)
|
---|
| 1037 | throw NotAvailableOperation("FitsImg2DRd::Init: bad Naxis[0-1] value\n");
|
---|
| 1038 |
|
---|
| 1039 | }
|
---|
| 1040 |
|
---|
| 1041 | /*! Destructor. */
|
---|
| 1042 | FitsImg2DRd::~FitsImg2DRd()
|
---|
| 1043 | {
|
---|
| 1044 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
| 1045 | Naxis[0] = Naxis[1] = 0;
|
---|
| 1046 | }
|
---|
| 1047 |
|
---|
| 1048 | //////////////////////////////////////////////////////////////
|
---|
| 1049 | /*!
|
---|
| 1050 | Read a fitsheader key into double
|
---|
| 1051 | \param keyname : name of the key
|
---|
| 1052 | \return value into double
|
---|
| 1053 | */
|
---|
| 1054 | double FitsImg2DRd::ReadKey(char *keyname)
|
---|
| 1055 | {
|
---|
[3114] | 1056 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
[2453] | 1057 | }
|
---|
| 1058 |
|
---|
| 1059 | /*!
|
---|
| 1060 | Read a fitsheader key into long
|
---|
| 1061 | \param keyname : name of the key
|
---|
| 1062 | \return value into long
|
---|
| 1063 | */
|
---|
| 1064 | long FitsImg2DRd::ReadKeyL(char *keyname)
|
---|
| 1065 | {
|
---|
[3114] | 1066 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
[2453] | 1067 | }
|
---|
| 1068 |
|
---|
| 1069 | /*!
|
---|
| 1070 | Read a fitsheader key into string
|
---|
| 1071 | \param keyname : name of the key
|
---|
| 1072 | \return value into string
|
---|
| 1073 | */
|
---|
| 1074 | string FitsImg2DRd::ReadKeyS(char *keyname)
|
---|
| 1075 | {
|
---|
[3114] | 1076 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
[2453] | 1077 | }
|
---|
| 1078 |
|
---|
| 1079 | //////////////////////////////////////////////////////////////
|
---|
| 1080 | /* REMARQUE:
|
---|
| 1081 | * Si une image FITS a NAXIS1=100 et NAXIS2=50
|
---|
| 1082 | * alors un tableau 2D juste assez grand pour contenir l'image
|
---|
| 1083 | * doit etre declare array[50][100] (et non pas array[100][50])
|
---|
| 1084 | * array[NAXIS2][NAXIS1]
|
---|
| 1085 | */
|
---|
| 1086 | /*!
|
---|
| 1087 | Read image into a TMatrix<uint_2>
|
---|
| 1088 | \warning TMatrix data(Naxis2,Naxis1)
|
---|
| 1089 | */
|
---|
[3114] | 1090 | size_t FitsImg2DRd::Read(TMatrix<uint_2>& data)
|
---|
[2453] | 1091 | {
|
---|
| 1092 | int sta=0;
|
---|
| 1093 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
| 1094 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
| 1095 |
|
---|
| 1096 | for(int j=0;j<Naxis[1];j++) {
|
---|
| 1097 | long deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
[3114] | 1098 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
[2453] | 1099 | if(sta) {
|
---|
| 1100 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1101 | throw
|
---|
| 1102 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<uint_2>): Error Reading Fits file\n");
|
---|
| 1103 | }
|
---|
| 1104 | for(int i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
| 1105 | }
|
---|
| 1106 |
|
---|
| 1107 | delete [] arr;
|
---|
| 1108 | return Naxis[0]*Naxis[1];
|
---|
| 1109 | }
|
---|
| 1110 |
|
---|
| 1111 | /*! Read image into a TMatrix<int_4> */
|
---|
[3114] | 1112 | size_t FitsImg2DRd::Read(TMatrix<int_4>& data)
|
---|
[2453] | 1113 | {
|
---|
| 1114 | int sta=0;
|
---|
| 1115 | int_4* arr = new int_4[Naxis[0]];
|
---|
| 1116 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
| 1117 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
| 1118 |
|
---|
| 1119 | for(int j=0;j<Naxis[1];j++) {
|
---|
| 1120 | long deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
[3114] | 1121 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
[2453] | 1122 | if(sta) {
|
---|
| 1123 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1124 | throw
|
---|
| 1125 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_4>): Error Reading Fits file\n");
|
---|
| 1126 | }
|
---|
| 1127 | for(int i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
| 1128 | }
|
---|
| 1129 |
|
---|
| 1130 | delete [] arr;
|
---|
| 1131 | return Naxis[0]*Naxis[1];
|
---|
| 1132 | }
|
---|
| 1133 |
|
---|
| 1134 | /*! Read image into a TMatrix<int_8> */
|
---|
[3114] | 1135 | size_t FitsImg2DRd::Read(TMatrix<int_8>& data)
|
---|
[2453] | 1136 | {
|
---|
| 1137 | int sta=0;
|
---|
| 1138 | int_8* arr = new int_8[Naxis[0]];
|
---|
| 1139 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
| 1140 |
|
---|
| 1141 | for(int j=0;j<Naxis[1];j++) {
|
---|
| 1142 | long deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
[3114] | 1143 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
[2453] | 1144 | if(sta) {
|
---|
| 1145 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1146 | throw
|
---|
| 1147 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_8>): Error Reading Fits file\n");
|
---|
| 1148 | }
|
---|
| 1149 | for(int i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
| 1150 | }
|
---|
| 1151 |
|
---|
| 1152 | delete [] arr;
|
---|
| 1153 | return Naxis[0]*Naxis[1];
|
---|
| 1154 | }
|
---|
| 1155 |
|
---|
| 1156 | /*! Read image into a TMatrix<float> */
|
---|
[3114] | 1157 | size_t FitsImg2DRd::Read(TMatrix<float>& data)
|
---|
[2453] | 1158 | {
|
---|
| 1159 | int sta=0;
|
---|
| 1160 | float* arr = new float[Naxis[0]];
|
---|
| 1161 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
| 1162 |
|
---|
| 1163 | for(int j=0;j<Naxis[1];j++) {
|
---|
| 1164 | long deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
[3114] | 1165 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
[2453] | 1166 | if(sta) {
|
---|
| 1167 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1168 | throw
|
---|
| 1169 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<float>): Error Reading Fits file\n");
|
---|
| 1170 | }
|
---|
| 1171 | for(int i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
| 1172 | }
|
---|
| 1173 |
|
---|
| 1174 | delete [] arr;
|
---|
| 1175 | return Naxis[0]*Naxis[1];
|
---|
| 1176 | }
|
---|
| 1177 |
|
---|
| 1178 | /*! Read image into a TMatrix<double> */
|
---|
[3114] | 1179 | size_t FitsImg2DRd::Read(TMatrix<double>& data)
|
---|
[2453] | 1180 | {
|
---|
| 1181 | int sta=0;
|
---|
| 1182 | double* arr = new double[Naxis[0]];
|
---|
| 1183 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
| 1184 |
|
---|
| 1185 | for(int j=0;j<Naxis[1];j++) {
|
---|
| 1186 | long deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
[3114] | 1187 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
[2453] | 1188 | if(sta) {
|
---|
| 1189 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1190 | throw
|
---|
| 1191 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<double>): Error Reading Fits file\n");
|
---|
| 1192 | }
|
---|
| 1193 | for(int i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
| 1194 | }
|
---|
| 1195 |
|
---|
| 1196 | delete [] arr;
|
---|
| 1197 | return Naxis[0]*Naxis[1];
|
---|
| 1198 | }
|
---|
[2791] | 1199 |
|
---|
| 1200 | ///////////////////////////////////////////////////////////////////
|
---|
| 1201 | ///////////////////////////////////////////////////////////////////
|
---|
| 1202 | ///////////////////////////////////////////////////////////////////
|
---|
| 1203 | ///////////////////////////////////////////////////////////////////
|
---|
| 1204 |
|
---|
| 1205 | //! Class for reading a 2D image from a FITS file
|
---|
| 1206 |
|
---|
| 1207 | /*!
|
---|
| 1208 | \class SOPHYA::FitsImg2DRead
|
---|
| 1209 | \ingroup FitsIOServer
|
---|
| 1210 | Class for reading a 2D image from a FITS file
|
---|
| 1211 | */
|
---|
| 1212 |
|
---|
| 1213 | //////////////////////////////////////////////////////////////
|
---|
| 1214 | /*!
|
---|
| 1215 | Constructor.
|
---|
| 1216 | \param fname : name of the FITS file
|
---|
| 1217 | \param ihdu : number of the HDU where the image is.
|
---|
| 1218 | \param lp : debug level
|
---|
| 1219 | \verbatim
|
---|
| 1220 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
| 1221 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
| 1222 | \endverbatim
|
---|
| 1223 | \warning ihdu = [1,nhdu]
|
---|
| 1224 | */
|
---|
| 1225 | FitsImg2DRead::FitsImg2DRead(string fname,int ihdu,int lp)
|
---|
| 1226 | : FitsImg2DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
| 1227 | {
|
---|
| 1228 | }
|
---|
| 1229 |
|
---|
| 1230 | /*! Constructor. see below */
|
---|
| 1231 | FitsImg2DRead::FitsImg2DRead(const char * cfname,int ihdu,int lp)
|
---|
| 1232 | : FitsImg2DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
| 1233 | {
|
---|
| 1234 | }
|
---|
| 1235 |
|
---|
| 1236 | /*! Constructor by default */
|
---|
| 1237 | FitsImg2DRead::FitsImg2DRead()
|
---|
| 1238 | : FitsImg2DRd()
|
---|
| 1239 | {
|
---|
| 1240 | }
|
---|
| 1241 |
|
---|
| 1242 | /*! Constructor by copy */
|
---|
| 1243 | FitsImg2DRead::FitsImg2DRead(FitsImg2DRead& fimg)
|
---|
| 1244 | {
|
---|
| 1245 | // --- ATTENTION ---
|
---|
| 1246 | // FitsImg2DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
| 1247 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
|
---|
| 1248 | Init(fof,fimg.HDU(),fimg.DbgLevel);
|
---|
| 1249 | }
|
---|
| 1250 |
|
---|
| 1251 | /*! Destructor. */
|
---|
| 1252 | FitsImg2DRead::~FitsImg2DRead()
|
---|
| 1253 | {
|
---|
| 1254 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
| 1255 | if(FitsOF!=NULL) delete FitsOF;
|
---|
| 1256 | }
|
---|
[3114] | 1257 |
|
---|
| 1258 |
|
---|
| 1259 |
|
---|
| 1260 | ///////////////////////////////////////////////////////////////////
|
---|
| 1261 | ///////////////////////////////////////////////////////////////////
|
---|
| 1262 | ///////////////////////////////////////////////////////////////////
|
---|
| 1263 | ///////////////////////////////////////////////////////////////////
|
---|
| 1264 |
|
---|
| 1265 | //! Class for reading a 3D image from a FITS file
|
---|
| 1266 |
|
---|
| 1267 | /*!
|
---|
| 1268 | \class SOPHYA::FitsImg3DRd
|
---|
| 1269 | \ingroup FitsIOServer
|
---|
| 1270 | Class for reading a 3D image from a FITS file
|
---|
| 1271 | */
|
---|
| 1272 |
|
---|
| 1273 | //////////////////////////////////////////////////////////////
|
---|
| 1274 | /*!
|
---|
| 1275 | Constructor.
|
---|
| 1276 | \param fof : Pointer to the Class for opening the FITS file
|
---|
| 1277 | \param ihdu : number of the HDU where the 3D image is.
|
---|
| 1278 | \param lp : debug level
|
---|
| 1279 | \verbatim
|
---|
| 1280 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
| 1281 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
| 1282 | \endverbatim
|
---|
| 1283 | \warning ihdu = [1,nhdu]
|
---|
| 1284 | */
|
---|
| 1285 | FitsImg3DRd::FitsImg3DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
| 1286 | {
|
---|
| 1287 | Init(fof,ihdu,lp);
|
---|
| 1288 | }
|
---|
| 1289 |
|
---|
| 1290 | /*! Constructor by copy */
|
---|
| 1291 | FitsImg3DRd::FitsImg3DRd(FitsImg3DRd& fbt)
|
---|
| 1292 | {
|
---|
| 1293 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
| 1294 | }
|
---|
| 1295 |
|
---|
| 1296 | /*! Constructor by default */
|
---|
| 1297 | FitsImg3DRd::FitsImg3DRd()
|
---|
| 1298 | {
|
---|
| 1299 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
| 1300 | SetNulVal(); SetDebug(0);
|
---|
| 1301 | FitsOF = NULL;
|
---|
| 1302 | }
|
---|
| 1303 |
|
---|
| 1304 | /*! Init routine called by the constructor */
|
---|
| 1305 | void FitsImg3DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
| 1306 | {
|
---|
| 1307 | // Initialisation des Parametres Generaux
|
---|
| 1308 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
| 1309 | SetNulVal(); SetDebug(lp);
|
---|
| 1310 | FitsOF = NULL;
|
---|
| 1311 |
|
---|
| 1312 | // Caracteristiques du FitsOpenFile
|
---|
| 1313 | FitsOF = fof;
|
---|
| 1314 | if(FitsOF==NULL)
|
---|
| 1315 | throw NullPtrError("FitsImg3DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
| 1316 |
|
---|
| 1317 | if(GetFitsPtr()==NULL)
|
---|
| 1318 | throw NullPtrError("FitsImg3DRd::Init: FitsPtr pointer is NULL\n");
|
---|
| 1319 |
|
---|
| 1320 | int sta = 0;
|
---|
| 1321 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
| 1322 |
|
---|
| 1323 | // Get HDU 3D image
|
---|
| 1324 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
| 1325 | if(FitsOF->GetPosStatus()==false) {
|
---|
| 1326 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
| 1327 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
| 1328 | } else {
|
---|
| 1329 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
| 1330 | if(rc!=ihdu)
|
---|
| 1331 | throw RangeCheckError("FitsImg3DRd::Init: Error moving to requested HDU\n");
|
---|
| 1332 | }
|
---|
| 1333 | } else { // Fits file has already been positionned
|
---|
| 1334 | if(ihdu>0 && ihdu!=HDU())
|
---|
| 1335 | throw RangeCheckError("FitsImg3DRd::Init: file already posit. at another HDU\n");
|
---|
| 1336 | }
|
---|
| 1337 |
|
---|
| 1338 | // Check HDUType and set position status to TRUE
|
---|
| 1339 | if(HDUType()!=IMAGE_HDU)
|
---|
| 1340 | throw TypeMismatchExc("FitsImg3DRd::Init: HDU not IMAGE_HDU\n");
|
---|
| 1341 | FitsOF->SetPosStatus(true);
|
---|
| 1342 |
|
---|
| 1343 | // Get NAXIS 1, 2 et 3
|
---|
| 1344 | int nfound=0;
|
---|
| 1345 | if(fits_read_keys_lng(GetFitsPtr(),"NAXIS",1,3,Naxis,&nfound,&sta)) {
|
---|
| 1346 | FitsOpenFile::printerror(sta);
|
---|
| 1347 | throw RangeCheckError("FitsImg3DRd::Init: Error reading NAXIS cards\n");
|
---|
| 1348 | }
|
---|
| 1349 | if(DbgLevel>1)
|
---|
| 1350 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
| 1351 | <<Naxis[1]<<" NAXIS3="<<Naxis[2]<<" (nfound="<<nfound<<")"<<endl;
|
---|
| 1352 | if(nfound!=3 || Naxis[0]<=0 || Naxis[1]<=0 || Naxis[2]<=0)
|
---|
| 1353 | throw NotAvailableOperation("FitsImg3DRd::Init: bad Naxis[0-2] value\n");
|
---|
| 1354 |
|
---|
| 1355 | }
|
---|
| 1356 |
|
---|
| 1357 | /*! Destructor. */
|
---|
| 1358 | FitsImg3DRd::~FitsImg3DRd()
|
---|
| 1359 | {
|
---|
| 1360 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
| 1361 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
| 1362 | }
|
---|
| 1363 |
|
---|
| 1364 | //////////////////////////////////////////////////////////////
|
---|
| 1365 | /*!
|
---|
| 1366 | Read a fitsheader key into double
|
---|
| 1367 | \param keyname : name of the key
|
---|
| 1368 | \return value into double
|
---|
| 1369 | */
|
---|
| 1370 | double FitsImg3DRd::ReadKey(char *keyname)
|
---|
| 1371 | {
|
---|
| 1372 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
| 1373 | }
|
---|
| 1374 |
|
---|
| 1375 | /*!
|
---|
| 1376 | Read a fitsheader key into long
|
---|
| 1377 | \param keyname : name of the key
|
---|
| 1378 | \return value into long
|
---|
| 1379 | */
|
---|
| 1380 | long FitsImg3DRd::ReadKeyL(char *keyname)
|
---|
| 1381 | {
|
---|
| 1382 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
| 1383 | }
|
---|
| 1384 |
|
---|
| 1385 | /*!
|
---|
| 1386 | Read a fitsheader key into string
|
---|
| 1387 | \param keyname : name of the key
|
---|
| 1388 | \return value into string
|
---|
| 1389 | */
|
---|
| 1390 | string FitsImg3DRd::ReadKeyS(char *keyname)
|
---|
| 1391 | {
|
---|
| 1392 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
| 1393 | }
|
---|
| 1394 |
|
---|
| 1395 | //////////////////////////////////////////////////////////////
|
---|
| 1396 | /* REMARQUE:
|
---|
| 1397 | * Dans TArray A(naxis1,naxis2,naxis3);
|
---|
| 1398 | * A(i,j,k) -> i varie le plus vite et k le moins vite
|
---|
| 1399 | */
|
---|
| 1400 | /*!
|
---|
| 1401 | Read 3D image into a TArray<uint_2>
|
---|
| 1402 | */
|
---|
| 1403 | size_t FitsImg3DRd::Read(TArray<uint_2>& data)
|
---|
| 1404 | {
|
---|
| 1405 | int sta=0;
|
---|
| 1406 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
| 1407 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
| 1408 |
|
---|
| 1409 | for(int k=0;k<Naxis[2];k++) for(int j=0;j<Naxis[1];j++) {
|
---|
| 1410 | long deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
| 1411 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
| 1412 | if(sta) {
|
---|
| 1413 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1414 | throw
|
---|
| 1415 | NotAvailableOperation("FitsImg3DRd::Read(TArray<uint_2>): Error Reading Fits file\n");
|
---|
| 1416 | }
|
---|
| 1417 | for(int i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
| 1418 | }
|
---|
| 1419 |
|
---|
| 1420 | delete [] arr;
|
---|
| 1421 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
| 1422 | }
|
---|
| 1423 |
|
---|
| 1424 | /*! Read 3D image into a TArray<int_4> */
|
---|
| 1425 | size_t FitsImg3DRd::Read(TArray<int_4>& data)
|
---|
| 1426 | {
|
---|
| 1427 | int sta=0;
|
---|
| 1428 | int_4* arr = new int_4[Naxis[0]];
|
---|
| 1429 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
| 1430 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
| 1431 |
|
---|
| 1432 | for(int k=0;k<Naxis[2];k++) for(int j=0;j<Naxis[1];j++) {
|
---|
| 1433 | long deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
| 1434 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
| 1435 | if(sta) {
|
---|
| 1436 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1437 | throw
|
---|
| 1438 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_4>): Error Reading Fits file\n");
|
---|
| 1439 | }
|
---|
| 1440 | for(int i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
| 1441 | }
|
---|
| 1442 |
|
---|
| 1443 | delete [] arr;
|
---|
| 1444 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
| 1445 | }
|
---|
| 1446 |
|
---|
| 1447 | /*! Read 3D image into a TArray<int_8> */
|
---|
| 1448 | size_t FitsImg3DRd::Read(TArray<int_8>& data)
|
---|
| 1449 | {
|
---|
| 1450 | int sta=0;
|
---|
| 1451 | int_8* arr = new int_8[Naxis[0]];
|
---|
| 1452 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
| 1453 |
|
---|
| 1454 | for(int k=0;k<Naxis[2];k++) for(int j=0;j<Naxis[1];j++) {
|
---|
| 1455 | long deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
| 1456 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
| 1457 | if(sta) {
|
---|
| 1458 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1459 | throw
|
---|
| 1460 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_8>): Error Reading Fits file\n");
|
---|
| 1461 | }
|
---|
| 1462 | for(int i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
| 1463 | }
|
---|
| 1464 |
|
---|
| 1465 | delete [] arr;
|
---|
| 1466 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
| 1467 | }
|
---|
| 1468 |
|
---|
| 1469 | /*! Read 3D image into a TArray<float> */
|
---|
| 1470 | size_t FitsImg3DRd::Read(TArray<float>& data)
|
---|
| 1471 | {
|
---|
| 1472 | int sta=0;
|
---|
| 1473 | float* arr = new float[Naxis[0]];
|
---|
| 1474 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
| 1475 |
|
---|
| 1476 | for(int k=0;k<Naxis[2];k++) for(int j=0;j<Naxis[1];j++) {
|
---|
| 1477 | long deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
| 1478 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
| 1479 | if(sta) {
|
---|
| 1480 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1481 | throw
|
---|
| 1482 | NotAvailableOperation("FitsImg3DRd::Read(TArray<float>): Error Reading Fits file\n");
|
---|
| 1483 | }
|
---|
| 1484 | for(int i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
| 1485 | }
|
---|
| 1486 |
|
---|
| 1487 | delete [] arr;
|
---|
| 1488 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
| 1489 | }
|
---|
| 1490 |
|
---|
| 1491 | /*! Read 3D image into a TArray<double> */
|
---|
| 1492 | size_t FitsImg3DRd::Read(TArray<double>& data)
|
---|
| 1493 | {
|
---|
| 1494 | int sta=0;
|
---|
| 1495 | double* arr = new double[Naxis[0]];
|
---|
| 1496 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
| 1497 |
|
---|
| 1498 | for(int k=0;k<Naxis[2];k++) for(int j=0;j<Naxis[1];j++) {
|
---|
| 1499 | long deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
| 1500 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
| 1501 | if(sta) {
|
---|
| 1502 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
| 1503 | throw
|
---|
| 1504 | NotAvailableOperation("FitsImg3DRd::Read(TArray<double>): Error Reading Fits file\n");
|
---|
| 1505 | }
|
---|
| 1506 | for(int i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
| 1507 | }
|
---|
| 1508 |
|
---|
| 1509 | delete [] arr;
|
---|
| 1510 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
| 1511 | }
|
---|
| 1512 |
|
---|
| 1513 | ///////////////////////////////////////////////////////////////////
|
---|
| 1514 | ///////////////////////////////////////////////////////////////////
|
---|
| 1515 | ///////////////////////////////////////////////////////////////////
|
---|
| 1516 | ///////////////////////////////////////////////////////////////////
|
---|
| 1517 |
|
---|
| 1518 | //! Class for reading a 3D image from a FITS file
|
---|
| 1519 |
|
---|
| 1520 | /*!
|
---|
| 1521 | \class SOPHYA::FitsImg3DRead
|
---|
| 1522 | \ingroup FitsIOServer
|
---|
| 1523 | Class for reading a 3D image from a FITS file
|
---|
| 1524 | */
|
---|
| 1525 |
|
---|
| 1526 | //////////////////////////////////////////////////////////////
|
---|
| 1527 | /*!
|
---|
| 1528 | Constructor.
|
---|
| 1529 | \param fname : name of the FITS file
|
---|
| 1530 | \param ihdu : number of the HDU where the 3D image is.
|
---|
| 1531 | \param lp : debug level
|
---|
| 1532 | \verbatim
|
---|
| 1533 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
| 1534 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
| 1535 | \endverbatim
|
---|
| 1536 | \warning ihdu = [1,nhdu]
|
---|
| 1537 | */
|
---|
| 1538 | FitsImg3DRead::FitsImg3DRead(string fname,int ihdu,int lp)
|
---|
| 1539 | : FitsImg3DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
| 1540 | {
|
---|
| 1541 | }
|
---|
| 1542 |
|
---|
| 1543 | /*! Constructor. see below */
|
---|
| 1544 | FitsImg3DRead::FitsImg3DRead(const char * cfname,int ihdu,int lp)
|
---|
| 1545 | : FitsImg3DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
| 1546 | {
|
---|
| 1547 | }
|
---|
| 1548 |
|
---|
| 1549 | /*! Constructor by default */
|
---|
| 1550 | FitsImg3DRead::FitsImg3DRead()
|
---|
| 1551 | : FitsImg3DRd()
|
---|
| 1552 | {
|
---|
| 1553 | }
|
---|
| 1554 |
|
---|
| 1555 | /*! Constructor by copy */
|
---|
| 1556 | FitsImg3DRead::FitsImg3DRead(FitsImg3DRead& fimg)
|
---|
| 1557 | {
|
---|
| 1558 | // --- ATTENTION ---
|
---|
| 1559 | // FitsImg3DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
| 1560 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
|
---|
| 1561 | Init(fof,fimg.HDU(),fimg.DbgLevel);
|
---|
| 1562 | }
|
---|
| 1563 |
|
---|
| 1564 | /*! Destructor. */
|
---|
| 1565 | FitsImg3DRead::~FitsImg3DRead()
|
---|
| 1566 | {
|
---|
| 1567 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
| 1568 | if(FitsOF!=NULL) delete FitsOF;
|
---|
| 1569 | }
|
---|