| [1654] | 1 | /* Lecteur de colonne de table Fits (binaire ou ASCII) avec buffer */ | 
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| [2615] | 2 | #include "sopnamsp.h" | 
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| [1654] | 3 | #include "machdefs.h" | 
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|  | 4 | #include <stdlib.h> | 
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|  | 5 | #include <stdio.h> | 
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|  | 6 | #include "pexceptions.h" | 
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|  | 7 | #include "fabtcolread.h" | 
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| [2449] | 8 |  | 
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|  | 9 | /////////////////////////////////////////////////////////////////// | 
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|  | 10 | /////////////////////////////////////////////////////////////////// | 
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|  | 11 | /////////////////////////////////////////////////////////////////// | 
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|  | 12 | /////////////////////////////////////////////////////////////////// | 
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|  | 13 |  | 
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|  | 14 | //! Class for opening a FITS file for reading | 
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|  | 15 |  | 
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|  | 16 | /*! | 
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|  | 17 | \class SOPHYA::FitsOpenFile | 
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|  | 18 | \ingroup FitsIOServer | 
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|  | 19 | Class for opening a FITS file for reading | 
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|  | 20 | */ | 
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|  | 21 |  | 
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|  | 22 | /*! | 
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|  | 23 | Constructor. | 
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|  | 24 | \param fname : FITS file name to be opened for reading | 
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|  | 25 | */ | 
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|  | 26 | FitsOpenFile::FitsOpenFile(string fname) | 
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|  | 27 | { | 
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|  | 28 | Init(fname.c_str()); | 
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|  | 29 | } | 
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|  | 30 |  | 
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|  | 31 | /*! | 
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|  | 32 | Constructor. | 
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|  | 33 | \param cfname : FITS file name to be opened for reading | 
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|  | 34 | */ | 
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|  | 35 | FitsOpenFile::FitsOpenFile(const char *cfname) | 
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|  | 36 | { | 
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|  | 37 | Init(cfname); | 
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|  | 38 | } | 
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|  | 39 |  | 
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|  | 40 | /*! | 
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|  | 41 | Constructor by default. | 
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|  | 42 | */ | 
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|  | 43 | FitsOpenFile::FitsOpenFile() | 
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|  | 44 | { | 
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|  | 45 | FitsFN = ""; | 
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| [2456] | 46 | NHdu = IHdu = HduType = 0; | 
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|  | 47 | HasBeenPos = false; | 
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| [2449] | 48 | FitsPtr = NULL; | 
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|  | 49 | } | 
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|  | 50 |  | 
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|  | 51 | /*! | 
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|  | 52 | Constructor by copy. | 
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|  | 53 | */ | 
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|  | 54 | FitsOpenFile::FitsOpenFile(FitsOpenFile& fof) | 
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|  | 55 | { | 
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| [2456] | 56 | Init(fof.FileName().c_str()); | 
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| [2449] | 57 | } | 
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|  | 58 |  | 
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|  | 59 | /*! | 
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|  | 60 | Destructor. | 
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|  | 61 | */ | 
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|  | 62 | FitsOpenFile::~FitsOpenFile() | 
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|  | 63 | { | 
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|  | 64 | Delete(); | 
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|  | 65 | FitsFN = ""; | 
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| [2456] | 66 | NHdu = IHdu = HduType = 0; | 
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|  | 67 | HasBeenPos = false; | 
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| [2449] | 68 | } | 
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|  | 69 |  | 
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|  | 70 | /*! | 
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|  | 71 | Delete routine called by the destructor. | 
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|  | 72 | */ | 
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|  | 73 | void FitsOpenFile::Delete(void) | 
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|  | 74 | { | 
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|  | 75 | if(FitsPtr != NULL) { | 
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|  | 76 | int sta = 0; | 
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|  | 77 | if(fits_close_file(FitsPtr,&sta)) printerror(sta); | 
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|  | 78 | FitsPtr = NULL; | 
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|  | 79 | } | 
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|  | 80 | } | 
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|  | 81 |  | 
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|  | 82 | /*! Init routine called by the constructor */ | 
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|  | 83 | void FitsOpenFile::Init(const char* fname) | 
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|  | 84 | { | 
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| [2456] | 85 | // Parametres Generaux | 
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|  | 86 | FitsFN = fname; | 
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|  | 87 | NHdu = IHdu = HduType = 0; | 
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|  | 88 | HasBeenPos = false; | 
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|  | 89 | FitsPtr = NULL; | 
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| [2449] | 90 |  | 
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| [2456] | 91 | // Ouverture du fichier | 
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|  | 92 | if(FitsFN.size() <= 0 ) | 
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|  | 93 | throw ParmError("FitsOpenFile::Init: Fits file name error\n"); | 
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| [2449] | 94 |  | 
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| [2456] | 95 | int sta = 0; | 
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|  | 96 | if(fits_open_file(&FitsPtr,FitsFN.c_str(),READONLY,&sta)) { | 
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|  | 97 | printerror(sta); | 
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|  | 98 | FitsPtr = NULL; | 
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|  | 99 | throw NullPtrError("FitsOpenFile::Init: Error opening Fits file\n"); | 
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|  | 100 | } | 
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| [2449] | 101 |  | 
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| [2456] | 102 | // Get number of hdu | 
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|  | 103 | if(fits_get_num_hdus(FitsPtr,&NHdu,&sta)) { | 
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|  | 104 | printerror(sta); | 
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|  | 105 | NHdu = 0; | 
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|  | 106 | Delete(); | 
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|  | 107 | throw NotAvailableOperation("FitsOpenFile::Init: Error getting NHdu\n"); | 
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|  | 108 | } | 
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|  | 109 | if(NHdu<=0) { | 
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|  | 110 | Delete(); | 
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|  | 111 | throw SzMismatchError("FitsOpenFile::Init: Bad NHdu\n"); | 
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|  | 112 | } | 
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| [2449] | 113 |  | 
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| [2456] | 114 | MoveToHDU(1); | 
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|  | 115 | } | 
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|  | 116 |  | 
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|  | 117 | /*! Move to an HDU | 
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|  | 118 | \param ihdu: hdu number to move | 
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|  | 119 | \warning ihdu = [1,nhdu] | 
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|  | 120 | \return 0 if positionning failed, ihdu if success | 
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|  | 121 | */ | 
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|  | 122 | int FitsOpenFile::MoveToHDU(int ihdu) | 
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|  | 123 | { | 
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|  | 124 | if(FitsPtr==NULL) | 
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|  | 125 | throw NullPtrError("FitsOpenFile::MoveToHDU: no fits file open FitsPtr==NULL\n"); | 
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|  | 126 | int ihdusave = IHdu; | 
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|  | 127 | if(ihdu<=0) ihdu=1; if(ihdu>NHdu) ihdu=NHdu; | 
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|  | 128 | int sta=0; | 
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|  | 129 | if(fits_movabs_hdu(FitsPtr,ihdu,&HduType,&sta)) { | 
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|  | 130 | printerror(sta); | 
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|  | 131 | // On se repositionne ou on etait | 
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|  | 132 | fits_movabs_hdu(FitsPtr,ihdusave,&HduType,&sta); | 
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|  | 133 | IHdu = ihdusave; | 
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|  | 134 | } else IHdu = ihdu; | 
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|  | 135 | return IHdu; | 
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|  | 136 | } | 
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|  | 137 |  | 
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|  | 138 | /*! Move to the first HDU of a certain type | 
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|  | 139 | \param hdutype: type of the hdu | 
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|  | 140 | \param hdudeb: start at that hdu | 
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|  | 141 | \return the type of HDU the file is positionned | 
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|  | 142 | */ | 
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|  | 143 | int FitsOpenFile::MoveToFirst(int hdutype,int ihdudeb) | 
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|  | 144 | { | 
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|  | 145 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu; | 
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|  | 146 | int ihdusave = IHdu; | 
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|  | 147 | for(int ihdu=ihdudeb;ihdu<=NHdu;ihdu++) { | 
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|  | 148 | MoveToHDU(ihdu); | 
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|  | 149 | if(HduType==hdutype) break; | 
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| [2449] | 150 | } | 
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| [2456] | 151 | // Si echec, on se repositionne ou on etait | 
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|  | 152 | if(HduType!=hdutype) MoveToHDU(ihdusave); | 
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|  | 153 | return HduType; | 
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|  | 154 | } | 
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| [2449] | 155 |  | 
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| [2456] | 156 | /*! Move to the last HDU of a certain type | 
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|  | 157 | \param hdutype: type of the hdu | 
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|  | 158 | \param hdudeb: stop at that hdu | 
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|  | 159 | \return the type of HDU the file is positionned | 
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|  | 160 | */ | 
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|  | 161 | int FitsOpenFile::MoveToLast(int hdutype,int ihdudeb) | 
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|  | 162 | { | 
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|  | 163 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu; | 
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|  | 164 | int ihdusave = IHdu; | 
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|  | 165 | for(int ihdu=NHdu;ihdu>=ihdudeb;ihdu--) { | 
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|  | 166 | MoveToHDU(ihdu); | 
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|  | 167 | if(HduType==hdutype) break; | 
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|  | 168 | } | 
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|  | 169 | // Si echec, on se repositionne ou on etait | 
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|  | 170 | if(HduType!=hdutype) MoveToHDU(ihdusave); | 
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|  | 171 | return HduType; | 
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|  | 172 | } | 
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|  | 173 |  | 
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|  | 174 | /*! Print */ | 
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|  | 175 | void FitsOpenFile::Print(void) | 
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|  | 176 | { | 
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|  | 177 | cout<<"FitsOpenFile::Print: "<<FitsFN | 
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|  | 178 | <<" hdu="<<IHdu<<"/"<<NHdu<<" type="<<HduType | 
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|  | 179 | <<" hasbeenpos="<<HasBeenPos<<endl; | 
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|  | 180 | } | 
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|  | 181 |  | 
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| [2453] | 182 | ////////////////////////////////////////////////////////////// | 
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|  | 183 | //// Methodes statiques | 
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|  | 184 | ////////////////////////////////////////////////////////////// | 
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|  | 185 | /*! | 
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|  | 186 | Read a fitsheader key into double | 
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|  | 187 | \param fitsptr : cfitio pointer to Fits file | 
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|  | 188 | \param keyname : name of the key | 
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|  | 189 | \return value into double | 
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|  | 190 | */ | 
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| [3572] | 191 | double FitsOpenFile::ReadKey(fitsfile *fitsptr,const char *keyname) | 
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| [2453] | 192 | { | 
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| [2456] | 193 | if(keyname==NULL || fitsptr==NULL) return 0.; | 
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| [2453] | 194 | int sta=0; double val=0.; | 
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|  | 195 | if(fits_read_key(fitsptr,TDOUBLE,keyname,&val,NULL,&sta)) | 
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|  | 196 | printerror(sta); | 
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|  | 197 | return val; | 
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|  | 198 | } | 
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|  | 199 |  | 
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|  | 200 | /*! | 
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|  | 201 | Read a fitsheader key into long | 
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|  | 202 | \param fitsptr : cfitio pointer to Fits file | 
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|  | 203 | \param keyname : name of the key | 
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|  | 204 | \return value into long | 
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|  | 205 | */ | 
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| [3572] | 206 | long FitsOpenFile::ReadKeyL(fitsfile *fitsptr,const char *keyname) | 
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| [2453] | 207 | { | 
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| [2456] | 208 | if(keyname==NULL || fitsptr==NULL) return 0; | 
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| [2453] | 209 | int sta=0; long val=0; | 
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|  | 210 | if(fits_read_key(fitsptr,TLONG,keyname,&val,NULL,&sta)) | 
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|  | 211 | printerror(sta); | 
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|  | 212 | return val; | 
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|  | 213 | } | 
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|  | 214 |  | 
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|  | 215 | /*! | 
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| [3128] | 216 | Read a fitsheader key into long | 
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|  | 217 | \param fitsptr : cfitio pointer to Fits file | 
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|  | 218 | \param keyname : name of the key | 
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|  | 219 | \return value into long long | 
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|  | 220 | */ | 
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| [3572] | 221 | LONGLONG FitsOpenFile::ReadKeyLL(fitsfile *fitsptr,const char *keyname) | 
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| [3128] | 222 | { | 
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|  | 223 | if(keyname==NULL || fitsptr==NULL) return 0; | 
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|  | 224 | int sta=0; LONGLONG val=0; | 
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|  | 225 | if(fits_read_key(fitsptr,TLONGLONG,keyname,&val,NULL,&sta)) | 
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|  | 226 | printerror(sta); | 
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|  | 227 | return val; | 
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|  | 228 | } | 
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|  | 229 |  | 
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|  | 230 | /*! | 
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| [2453] | 231 | Read a fitsheader key into string | 
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|  | 232 | \param fitsptr : cfitio pointer to Fits file | 
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|  | 233 | \param keyname : name of the key | 
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|  | 234 | \return value into string | 
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|  | 235 | */ | 
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| [3572] | 236 | string FitsOpenFile::ReadKeyS(fitsfile *fitsptr,const char *keyname) | 
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| [2453] | 237 | { | 
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| [2456] | 238 | if(keyname==NULL || fitsptr==NULL) return (string)""; | 
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| [2453] | 239 | int sta=0; char val[FLEN_VALUE]; | 
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|  | 240 | if(fits_read_key(fitsptr,TSTRING,keyname,val,NULL,&sta)) | 
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|  | 241 | printerror(sta); | 
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|  | 242 | string sval = val; | 
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|  | 243 | return sval; | 
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|  | 244 | } | 
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|  | 245 |  | 
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|  | 246 | /*! | 
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|  | 247 | CFitsIO error printing routine | 
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|  | 248 | \param sta : cfitio error return code | 
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|  | 249 | */ | 
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|  | 250 | void FitsOpenFile::printerror(int sta) | 
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| [2449] | 251 | { | 
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|  | 252 | int stat = sta; | 
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|  | 253 | fits_report_error(stdout,stat); | 
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|  | 254 | fflush(stdout); | 
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|  | 255 | return; | 
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|  | 256 | } | 
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|  | 257 |  | 
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|  | 258 | /////////////////////////////////////////////////////////////////// | 
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|  | 259 | /////////////////////////////////////////////////////////////////// | 
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|  | 260 | /////////////////////////////////////////////////////////////////// | 
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|  | 261 | /////////////////////////////////////////////////////////////////// | 
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|  | 262 |  | 
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|  | 263 | /////////////////////////////////////////////////////////////////// | 
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| [1654] | 264 | //! Class for reading a column in a FITS ASCII or BINARY table | 
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|  | 265 |  | 
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|  | 266 | /*! | 
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| [2449] | 267 | \class SOPHYA::FitsABTColRd | 
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| [1654] | 268 | \ingroup FitsIOServer | 
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| [2789] | 269 | Class for reading a column in a FITS ASCII or BINARY table. | 
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|  | 270 | You can read many columns of the same FITS table by instanciating | 
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|  | 271 | many FitsABTColRd on the same FitsOpenFile. So, the FITS file is | 
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|  | 272 | opened only once. Of course the various FitsABTColRd must read | 
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|  | 273 | the same FITS file HDU. | 
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| [1654] | 274 | \verbatim | 
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| [1659] | 275 | -- Exemple: | 
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| [2449] | 276 | // Open the fits file with FitsOpenFile | 
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|  | 277 | FitsOpenFile fof = new FitsOpenFile("myfits.fits"); | 
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|  | 278 | // Select the column to be read | 
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|  | 279 | FitsABTColRd fbt(fof,"BoloMuv_28",0,1000,1,3); | 
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| [2456] | 280 | FitsABTColRd fbt2(fof,"BoloMuv_29",0,1000,1,3); | 
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| [1654] | 281 | fbt.SetDebug(3); | 
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|  | 282 | fbt.Print(3); | 
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| [1659] | 283 | // Read element by element | 
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| [3128] | 284 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) { | 
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| [1654] | 285 | double x = fbt.Read(i); | 
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| [2456] | 286 | double y = fbt2.Read(i); | 
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|  | 287 | if(i%lpmod==0) cout<<i<<": "<<x<<", "<<y<<endl; | 
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| [1654] | 288 | } | 
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| [1659] | 289 | // Read into a vector | 
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|  | 290 | TVector<double> data; | 
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| [3128] | 291 | LONGLONG n = fbt.Read(32,50,data); | 
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| [1659] | 292 | cout<<"Number of values read: "<<n<<endl; | 
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|  | 293 | data.ReSize(100); | 
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|  | 294 | n = fbt.Read(10,-1,data); | 
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|  | 295 | cout<<"Number of values read: "<<n<<endl; | 
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| [2456] | 296 | TVector<double> data2; | 
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|  | 297 | fbt2.Read(32,50,data); | 
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| [2449] | 298 | // Close the fits file | 
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|  | 299 | delete fof; | 
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| [1654] | 300 | \endverbatim | 
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|  | 301 | */ | 
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|  | 302 |  | 
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|  | 303 | ////////////////////////////////////////////////////////////// | 
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|  | 304 | /*! | 
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|  | 305 | Constructor. | 
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| [2449] | 306 | \param fof : Pointer to the Class for opening the FITS file | 
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| [1659] | 307 | \param collabel : label of the column to be read | 
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|  | 308 | \param ihdu : number of the HDU where the column is. | 
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|  | 309 | \param blen : read buffer length | 
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|  | 310 | \param bsens : buffer reading direction | 
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|  | 311 | \param lp : debug level | 
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| [1654] | 312 | \verbatim | 
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| [2456] | 313 | - if ihdu<=0 first BINARY or ASCII table is taken | 
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|  | 314 | - if ihdu>nhdu ihdu is set to nhdu | 
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| [1659] | 315 | - bsens>0    read forward | 
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|  | 316 | bsens<0    read backward | 
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|  | 317 | bsens==0   read centered | 
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| [1654] | 318 | \endverbatim | 
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| [1659] | 319 | \warning ihdu = [1,nhdu] | 
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| [1654] | 320 | */ | 
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| [2449] | 321 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,string collabel | 
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|  | 322 | ,int ihdu,long blen,long bsens,int lp) | 
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| [1654] | 323 | { | 
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| [2449] | 324 | Init(fof,collabel.c_str(),-1,ihdu,blen,bsens,lp); | 
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| [1654] | 325 | } | 
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|  | 326 |  | 
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|  | 327 | /*! | 
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|  | 328 | Constructor. | 
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| [1659] | 329 | Same as before but the column is identified by its column number | 
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|  | 330 | \param colnum : number of the column to be read | 
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|  | 331 | \warning col = [0,ncol[ | 
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| [1654] | 332 | */ | 
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| [2449] | 333 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,int colnum | 
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|  | 334 | ,int ihdu,long blen,long bsens,int lp) | 
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| [1654] | 335 | { | 
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| [2449] | 336 | Init(fof,"",colnum,ihdu,blen,bsens,lp); | 
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| [1654] | 337 | } | 
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|  | 338 |  | 
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| [2449] | 339 | /*! Constructor by copy */ | 
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|  | 340 | FitsABTColRd::FitsABTColRd(FitsABTColRd& fbt) | 
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| [1654] | 341 | { | 
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| [2449] | 342 | Init(fbt.GetFitsOpenFile(),fbt.GetColLabel().c_str() | 
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| [2456] | 343 | ,fbt.GetColNum(),fbt.HDU() | 
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| [2449] | 344 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel); | 
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| [1654] | 345 | } | 
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|  | 346 |  | 
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| [2449] | 347 | /*! Constructor by default */ | 
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|  | 348 | FitsABTColRd::FitsABTColRd() | 
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| [1654] | 349 | { | 
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| [2449] | 350 | ColLabel = ""; ColTUnit = ""; ColTForm = ""; | 
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|  | 351 | ColNum = -1; ColTypeCode = 0; | 
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|  | 352 | NBcol = 0; NBline = 0; | 
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|  | 353 | SetNulVal(); SetDebug(0); | 
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|  | 354 | NFitsRead = 0; | 
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| [3114] | 355 | FitsOF = NULL; | 
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| [2449] | 356 | LineDeb = LineFin = -1; | 
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|  | 357 | Buffer = NULL; | 
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| [1654] | 358 | } | 
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|  | 359 |  | 
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|  | 360 | /*! Init routine called by the constructor */ | 
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| [2449] | 361 | void FitsABTColRd::Init(FitsOpenFile* fof,const char* collabel,int colnum | 
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| [1654] | 362 | ,int ihdu,long blen,long bsens,int lp) | 
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|  | 363 | { | 
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| [2449] | 364 | // Initialisation des Parametres Generaux | 
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| [2456] | 365 | ColLabel=collabel; ColTUnit=""; ColTForm=""; ColNum=colnum; ColTypeCode=0; | 
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|  | 366 | NBcol = 0; NBline = 0; | 
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|  | 367 | SetNulVal(); SetDebug(lp); | 
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| [1654] | 368 | NFitsRead = 0; | 
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| [3114] | 369 | FitsOF = NULL; | 
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| [1654] | 370 | LineDeb = LineFin = -1; | 
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|  | 371 | Buffer = NULL; | 
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|  | 372 |  | 
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| [2449] | 373 | // Caracteristiques du FitsOpenFile | 
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|  | 374 | FitsOF = fof; | 
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| [2456] | 375 | if(FitsOF==NULL) | 
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| [2449] | 376 | throw NullPtrError("FitsABTColRd::Init: FitsOpenFile pointer is NULL\n"); | 
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| [2456] | 377 |  | 
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| [3114] | 378 | if(GetFitsPtr()==NULL) | 
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| [2449] | 379 | throw NullPtrError("FitsABTColRd::Init: FitsPtr pointer is NULL\n"); | 
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| [1654] | 380 |  | 
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| [2449] | 381 | int sta = 0; | 
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| [2456] | 382 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU(); | 
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| [2449] | 383 |  | 
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| [1654] | 384 | // Get HDU for bin/ascii table | 
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| [2456] | 385 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU, | 
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|  | 386 | // une classe utilisant ce fichier doit le positionner sur un HDU. | 
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|  | 387 | // Par contre, si une autre classe utilise ce meme FitsOpenFile, | 
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|  | 388 | // elle ne peut le positionner que sur ce meme HDU ! | 
|---|
|  | 389 | if(FitsOF->GetPosStatus()==false) { | 
|---|
|  | 390 | if(ihdu==0) { // find the first BINARY then the first ASCII | 
|---|
|  | 391 | int rc = FitsOF->MoveToFirst(BINARY_TBL); | 
|---|
|  | 392 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL); | 
|---|
|  | 393 | } else { | 
|---|
|  | 394 | int rc = FitsOF->MoveToHDU(ihdu); | 
|---|
|  | 395 | if(rc!=ihdu) | 
|---|
|  | 396 | throw RangeCheckError("FitsABTColRd::Init: Error moving to requested HDU\n"); | 
|---|
| [1654] | 397 | } | 
|---|
| [2456] | 398 | } else { // Fits file has already been positionned | 
|---|
|  | 399 | if(ihdu>0 && ihdu!=HDU()) | 
|---|
|  | 400 | throw RangeCheckError("FitsABTColRd::Init: file already posit. at another HDU\n"); | 
|---|
| [1654] | 401 | } | 
|---|
| [2456] | 402 |  | 
|---|
|  | 403 | // Check HDUType and set position status to TRUE | 
|---|
|  | 404 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL) | 
|---|
| [2449] | 405 | throw TypeMismatchExc("FitsABTColRd::Init: HDU not ASCII/BINARY table\n"); | 
|---|
| [2456] | 406 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl; | 
|---|
|  | 407 | FitsOF->SetPosStatus(true); | 
|---|
| [1654] | 408 |  | 
|---|
|  | 409 | // Get number of columns | 
|---|
| [3114] | 410 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) { | 
|---|
| [2456] | 411 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 412 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of columns\n"); | 
|---|
| [1654] | 413 | } | 
|---|
|  | 414 | if(DbgLevel>1) cout<<"...Init  NBcol="<<NBcol<<endl; | 
|---|
| [2456] | 415 | if(NBcol<1) | 
|---|
| [2449] | 416 | throw RangeCheckError("FitsABTColRd::Init: Bad number of colums\n"); | 
|---|
| [1654] | 417 |  | 
|---|
|  | 418 | // Get number of rows | 
|---|
| [3128] | 419 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) { | 
|---|
| [2456] | 420 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 421 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of rows\n"); | 
|---|
| [1654] | 422 | } | 
|---|
|  | 423 | if(DbgLevel>1) cout<<"...Init  NBline="<<NBline<<endl; | 
|---|
| [2456] | 424 | if(NBline<1) | 
|---|
| [2449] | 425 | throw RangeCheckError("FitsABTColRd::Init: Bad number of rows\n"); | 
|---|
| [1654] | 426 |  | 
|---|
|  | 427 | // Get column number | 
|---|
| [1660] | 428 | char labelcol[128]; | 
|---|
| [1654] | 429 | if(ColLabel.size() > 0) { | 
|---|
|  | 430 | strcpy(labelcol,ColLabel.c_str()); | 
|---|
| [3114] | 431 | if(fits_get_colnum(GetFitsPtr(),CASESEN,labelcol,&ColNum,&sta)) { | 
|---|
| [2456] | 432 | FitsOpenFile::printerror(sta); | 
|---|
| [3660] | 433 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting column number\n"); | 
|---|
| [1654] | 434 | } | 
|---|
|  | 435 | ColNum--;  // Convention [0,ncol[ | 
|---|
|  | 436 | } | 
|---|
|  | 437 | if(DbgLevel>1) cout<<"...Init  ColNum="<<ColNum<<endl; | 
|---|
| [2456] | 438 | if(ColNum<0 || ColNum>=NBcol) | 
|---|
| [2449] | 439 | throw RangeCheckError("FitsABTColRd::Init: Bad column number\n"); | 
|---|
| [1654] | 440 |  | 
|---|
|  | 441 | // Get column type | 
|---|
| [3128] | 442 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode,NULL,NULL,&sta)) { | 
|---|
| [2456] | 443 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 444 | throw ParmError("FitsABTColRd::Init: Error getting column type\n"); | 
|---|
| [1654] | 445 | } | 
|---|
|  | 446 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode<<endl; | 
|---|
| [1660] | 447 | if(ColTypeCode==TSTRING || ColTypeCode==TCOMPLEX ||  ColTypeCode==TDBLCOMPLEX | 
|---|
| [2456] | 448 | || ColTypeCode<0 ) | 
|---|
| [2449] | 449 | throw ParmError("FitsABTColRd::Init: Selected column is not Numerical\n"); | 
|---|
| [1654] | 450 |  | 
|---|
|  | 451 | // Get column name back, tunit, tform | 
|---|
| [2174] | 452 | char tunit[64], tform[64], tdisp[64]; | 
|---|
| [3128] | 453 | LONGLONG repeat=0; double tscale=1., tzero=0.; | 
|---|
| [1654] | 454 | int rc=0; | 
|---|
| [2456] | 455 | if(HDUType()==BINARY_TBL) { | 
|---|
| [3128] | 456 | fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform | 
|---|
| [2174] | 457 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta); | 
|---|
| [1654] | 458 | } else { | 
|---|
| [3128] | 459 | long repeatlng; | 
|---|
|  | 460 | fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform | 
|---|
| [2174] | 461 | ,&tscale,&tzero,NULL,tdisp,&sta); | 
|---|
| [3128] | 462 | repeat = repeatlng; | 
|---|
| [1654] | 463 | } | 
|---|
|  | 464 | if(rc) { | 
|---|
| [2456] | 465 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 466 | throw RangeCheckError("FitsABTColRd::Init: Error getting the column caracteristics\n"); | 
|---|
| [1654] | 467 | } | 
|---|
|  | 468 | ColLabel = labelcol; | 
|---|
|  | 469 | ColTUnit = tunit; | 
|---|
|  | 470 | ColTForm = tform; | 
|---|
|  | 471 |  | 
|---|
| [2456] | 472 | // Set the buffer for reading | 
|---|
|  | 473 | ChangeBuffer(blen,bsens); | 
|---|
|  | 474 |  | 
|---|
| [1654] | 475 | if(DbgLevel) | 
|---|
| [2449] | 476 | cout<<"FitsABTColRd::Init Num="<<ColNum<<" Label="<<ColLabel | 
|---|
| [2173] | 477 | <<" TypeCode="<<ColTypeCode<<" TUnit="<<ColTUnit<<" TForm="<<ColTForm<<endl; | 
|---|
|  | 478 | if(DbgLevel>1) | 
|---|
| [2174] | 479 | cout<<"      (repeat="<<repeat<<",tscale="<<tscale<<",tzero="<<tzero | 
|---|
|  | 480 | <<",tdisp="<<tdisp<<")"<<endl; | 
|---|
| [1654] | 481 |  | 
|---|
|  | 482 | } | 
|---|
|  | 483 |  | 
|---|
|  | 484 | /*! Destructor. */ | 
|---|
| [2449] | 485 | FitsABTColRd::~FitsABTColRd() | 
|---|
| [1654] | 486 | { | 
|---|
|  | 487 | Delete(); | 
|---|
|  | 488 | } | 
|---|
|  | 489 |  | 
|---|
| [2449] | 490 | /*! Delete called by the destructor */ | 
|---|
|  | 491 | void FitsABTColRd::Delete(void) | 
|---|
| [1814] | 492 | { | 
|---|
| [2449] | 493 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;} | 
|---|
|  | 494 | LineDeb = LineFin = -1; | 
|---|
|  | 495 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!! | 
|---|
| [1814] | 496 | } | 
|---|
| [1654] | 497 |  | 
|---|
|  | 498 | ////////////////////////////////////////////////////////////// | 
|---|
| [1659] | 499 | /*! Change the buffer caracteristiques (see creator) */ | 
|---|
| [2449] | 500 | void FitsABTColRd::ChangeBuffer(long blen,long bsens) | 
|---|
| [1654] | 501 | { | 
|---|
| [1657] | 502 | long oldnbuffer = NBuffer; | 
|---|
|  | 503 |  | 
|---|
|  | 504 | // Compute buffer caracteristics | 
|---|
| [1654] | 505 | BuffLen = (blen<=0)? 1: blen; | 
|---|
|  | 506 | BuffSens = bsens; | 
|---|
| [1657] | 507 | NBuffer = BuffLen; | 
|---|
|  | 508 | if(bsens==0 && NBuffer%2==0) NBuffer++; | 
|---|
| [1654] | 509 |  | 
|---|
| [1657] | 510 | // De-allocate if necessary | 
|---|
| [1659] | 511 | if(Buffer!=NULL) { | 
|---|
|  | 512 | // On des-alloue si pas assez de place | 
|---|
|  | 513 | // ou si l'ancienne place est beaucoup trop grande (>25%) | 
|---|
|  | 514 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) ) | 
|---|
|  | 515 | {delete [] Buffer; Buffer=NULL;} | 
|---|
|  | 516 | } | 
|---|
| [1654] | 517 |  | 
|---|
| [1657] | 518 | // Re-allocate | 
|---|
|  | 519 | if(Buffer==NULL) Buffer = new double[NBuffer]; | 
|---|
|  | 520 |  | 
|---|
| [1654] | 521 | // Tell program that nothing is into buffer | 
|---|
|  | 522 | LineDeb = LineFin = -1; | 
|---|
|  | 523 | } | 
|---|
|  | 524 |  | 
|---|
| [2449] | 525 | ////////////////////////////////////////////////////////////// | 
|---|
| [2451] | 526 | /*! | 
|---|
|  | 527 | Read a fitsheader key into double | 
|---|
|  | 528 | \param keyname : name of the key | 
|---|
|  | 529 | \return value into double | 
|---|
|  | 530 | */ | 
|---|
| [3572] | 531 | double FitsABTColRd::ReadKey(const char *keyname) | 
|---|
| [1654] | 532 | { | 
|---|
| [3114] | 533 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname); | 
|---|
| [1654] | 534 | } | 
|---|
|  | 535 |  | 
|---|
| [2451] | 536 | /*! | 
|---|
|  | 537 | Read a fitsheader key into long | 
|---|
|  | 538 | \param keyname : name of the key | 
|---|
|  | 539 | \return value into long | 
|---|
|  | 540 | */ | 
|---|
| [3572] | 541 | long FitsABTColRd::ReadKeyL(const char *keyname) | 
|---|
| [2451] | 542 | { | 
|---|
| [3114] | 543 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname); | 
|---|
| [2451] | 544 | } | 
|---|
|  | 545 |  | 
|---|
|  | 546 | /*! | 
|---|
| [3128] | 547 | Read a fitsheader key into long long | 
|---|
|  | 548 | \param keyname : name of the key | 
|---|
|  | 549 | \return value into long long | 
|---|
|  | 550 | */ | 
|---|
| [3572] | 551 | LONGLONG FitsABTColRd::ReadKeyLL(const char *keyname) | 
|---|
| [3128] | 552 | { | 
|---|
|  | 553 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname); | 
|---|
|  | 554 | } | 
|---|
|  | 555 |  | 
|---|
|  | 556 | /*! | 
|---|
| [2451] | 557 | Read a fitsheader key into string | 
|---|
|  | 558 | \param keyname : name of the key | 
|---|
|  | 559 | \return value into string | 
|---|
|  | 560 | */ | 
|---|
| [3572] | 561 | string FitsABTColRd::ReadKeyS(const char *keyname) | 
|---|
| [2451] | 562 | { | 
|---|
| [3114] | 563 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname); | 
|---|
| [2451] | 564 | } | 
|---|
|  | 565 |  | 
|---|
| [1654] | 566 | ///////////////////////////////////////////////// | 
|---|
|  | 567 | /*! | 
|---|
| [1659] | 568 | Read row "n" and return the value into a double | 
|---|
|  | 569 | \warning be carefull for the range: row = [0,NRows[ | 
|---|
|  | 570 | \return value in double | 
|---|
|  | 571 | \param n : number of the row to be read. | 
|---|
| [1654] | 572 | \verbatim | 
|---|
| [1659] | 573 | usebuffer == true  : use read optimisation with bufferisation | 
|---|
|  | 574 | == false : no optimisation with bufferisation | 
|---|
|  | 575 | just read one value | 
|---|
| [1654] | 576 | \endverbatim | 
|---|
|  | 577 | */ | 
|---|
| [3128] | 578 | double FitsABTColRd::Read(LONGLONG n,bool usebuffer) | 
|---|
| [1654] | 579 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline] | 
|---|
|  | 580 | // Attention: colnum  [0,NBcol[ , cfistio veut [1,NBcol] | 
|---|
|  | 581 | { | 
|---|
| [1659] | 582 | int sta=0; | 
|---|
| [1654] | 583 | if(n<0 || n>=NBline) | 
|---|
| [2449] | 584 | throw RangeCheckError("FitsABTColRd::Read try to read outside line range\n"); | 
|---|
| [1654] | 585 |  | 
|---|
|  | 586 | // Pas de bufferisation, on lit betement | 
|---|
| [1659] | 587 | if(NBuffer==1 || !usebuffer) { | 
|---|
| [1654] | 588 | NFitsRead++; | 
|---|
| [1659] | 589 | double val; | 
|---|
| [3114] | 590 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,1,1,NULL,&val,NULL,&sta); | 
|---|
| [1654] | 591 | if(sta) { | 
|---|
| [2453] | 592 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 593 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n"); | 
|---|
| [1654] | 594 | } | 
|---|
| [1659] | 595 | // On ne remplit Buffer[0] que si on a choisit | 
|---|
|  | 596 | // un mode de lecture non bufferise (n==1) DES LE DEBUT. | 
|---|
|  | 597 | // Si on a initialement choisit un mode bufferise (avec n>1), | 
|---|
|  | 598 | // Buffer contient les valeurs chargees auparavent. | 
|---|
|  | 599 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;} | 
|---|
|  | 600 | // car on perd l'info de ces valeurs. | 
|---|
|  | 601 | if(NBuffer==1) {Buffer[0]=val; LineDeb=LineFin=n;} | 
|---|
|  | 602 | return val; | 
|---|
| [1654] | 603 | } | 
|---|
|  | 604 |  | 
|---|
|  | 605 | // Gestion avec bufferisation | 
|---|
| [1659] | 606 | if(!Buffer) | 
|---|
| [2449] | 607 | throw RangeCheckError("FitsABTColRd::Read: Buffer not allocated\n"); | 
|---|
| [1654] | 608 | if(n<LineDeb || n>LineFin) { | 
|---|
|  | 609 | NFitsRead++; | 
|---|
| [3128] | 610 | LONGLONG row1,row2,nrow; | 
|---|
| [1654] | 611 | if(BuffSens>0) { // Cas remplissage forward | 
|---|
|  | 612 | row1 = n+1; | 
|---|
| [1657] | 613 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline; | 
|---|
| [1654] | 614 | } else if(BuffSens<0) { // Cas remplissage backward | 
|---|
|  | 615 | row2 = n+1; | 
|---|
| [1657] | 616 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1; | 
|---|
| [1654] | 617 | } else { // Cas remplissage centre | 
|---|
| [1657] | 618 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1; | 
|---|
|  | 619 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline; | 
|---|
| [1654] | 620 | } | 
|---|
|  | 621 | nrow = row2 - row1 + 1; | 
|---|
|  | 622 | LineDeb = row1-1; LineFin = row2-1; | 
|---|
|  | 623 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow | 
|---|
|  | 624 | //    <<" LineDeb,Fin="<<LineDeb<<","<<LineFin<<endl; | 
|---|
| [3114] | 625 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer,NULL,&sta); | 
|---|
| [1654] | 626 | if(sta) { | 
|---|
| [2453] | 627 | FitsOpenFile::printerror(sta); | 
|---|
| [1654] | 628 | LineDeb = LineFin = -1; | 
|---|
| [2449] | 629 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n"); | 
|---|
| [1654] | 630 | } | 
|---|
|  | 631 | } | 
|---|
|  | 632 |  | 
|---|
|  | 633 | long ibuf = n-LineDeb; | 
|---|
|  | 634 | return Buffer[ibuf]; | 
|---|
|  | 635 | } | 
|---|
|  | 636 |  | 
|---|
|  | 637 | /*! | 
|---|
| [1659] | 638 | Read rows from "n1" to "n2" and return the values into TVector of double | 
|---|
|  | 639 | \return NREAD the number of values read (n2-n1+1). | 
|---|
|  | 640 | \warning row = [0,NRows[, the routine read [n1,n2] | 
|---|
| [1654] | 641 | \verbatim | 
|---|
| [1659] | 642 | - if n2<0 then read [n1,n2] where "n2=min(n1+vector_size-1,nrows-1)" | 
|---|
|  | 643 | - Last row read is ALWAYS: "n2 = n1 + NREAD -1" | 
|---|
|  | 644 | - The TVector is never resized if not necessary | 
|---|
|  | 645 | ------------------------------------------------------------------------- | 
|---|
|  | 646 | - ex: suppose the column table contains 10 elements: nrows=10, rows=[0,9] | 
|---|
|  | 647 |  | 
|---|
|  | 648 | TVector<double> V(5); | 
|---|
|  | 649 | bt.Read(3,5,V)  -> read rows=3,4,5     -> V.Size()==5 -> return 3 | 
|---|
|  | 650 | bt.Read(3,-1,V) -> read rows=3,4,5,6,7 -> V.Size()==5 -> return 5 | 
|---|
|  | 651 | bt.Read(7,-1,V) -> read rows=7,8,9     -> V.Size()==5 -> return 3 | 
|---|
|  | 652 | bt.Read(2,-1,V) -> read rows=2,3,4,5,6 -> V.Size()==5 -> return 5 | 
|---|
|  | 653 | bt.Read(-1,5,V) -> throw exception | 
|---|
|  | 654 |  | 
|---|
|  | 655 | TVector<double> V(5); | 
|---|
|  | 656 | bt.Read(3,99,V) -> read rows=3,4,5,6,7,8,9 -> V.Size()==7 -> return 7 | 
|---|
|  | 657 |  | 
|---|
|  | 658 | TVector<double> V(5); | 
|---|
|  | 659 | bt.Read(2,8,V)  -> read rows=2,3,4,5,6,7,8 -> V.Size()==7 -> return 7 | 
|---|
|  | 660 |  | 
|---|
|  | 661 | TVector<double> V; | 
|---|
|  | 662 | bt.Read(3,5,V)  -> read rows=3,4,5 -> V.Size()==3 -> return 3 | 
|---|
|  | 663 |  | 
|---|
|  | 664 | TVector<double> V; | 
|---|
|  | 665 | bt.Read(3,-1,V) -> throw exception | 
|---|
|  | 666 | ------------------------------------------------------------------------- | 
|---|
| [1654] | 667 | \endverbatim | 
|---|
|  | 668 | */ | 
|---|
| [3128] | 669 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<double>& data) | 
|---|
| [1654] | 670 | { | 
|---|
| [1659] | 671 | if(n1<0 || n1>=NBline) | 
|---|
| [2449] | 672 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n"); | 
|---|
| [1659] | 673 | if(data.Size()<=0 && n2<n1) | 
|---|
| [2449] | 674 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n"); | 
|---|
| [1659] | 675 | if(n2<0) n2 = n1 + data.Size()-1; | 
|---|
|  | 676 | if(n2>=NBline) n2 = NBline-1; | 
|---|
| [1654] | 677 |  | 
|---|
| [3128] | 678 | LONGLONG nread = n2-n1+1; | 
|---|
| [1659] | 679 | if(data.Size()<nread) data.SetSize(nread); | 
|---|
|  | 680 |  | 
|---|
| [3128] | 681 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i); | 
|---|
| [1659] | 682 | int sta=0; | 
|---|
| [3114] | 683 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta); | 
|---|
| [1659] | 684 | if(sta) { | 
|---|
| [2453] | 685 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 686 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<double>: Error Reading Fits file\n"); | 
|---|
| [1659] | 687 | } | 
|---|
|  | 688 |  | 
|---|
|  | 689 | return nread; | 
|---|
| [1654] | 690 | } | 
|---|
|  | 691 |  | 
|---|
| [1659] | 692 | /*! idem before but for TVector of float */ | 
|---|
| [3128] | 693 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<float>& data) | 
|---|
| [1659] | 694 | { | 
|---|
|  | 695 | if(n1<0 || n1>=NBline) | 
|---|
| [2449] | 696 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n"); | 
|---|
| [1659] | 697 | if(data.Size()<=0 && n2<n1) | 
|---|
| [2449] | 698 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n"); | 
|---|
| [1659] | 699 | if(n2<0) n2 = n1 + data.Size()-1; | 
|---|
|  | 700 | if(n2>=NBline) n2 = NBline-1; | 
|---|
|  | 701 |  | 
|---|
| [3128] | 702 | LONGLONG nread = n2-n1+1; | 
|---|
| [1659] | 703 | if(data.Size()<nread) data.SetSize(nread); | 
|---|
|  | 704 |  | 
|---|
| [3128] | 705 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i); | 
|---|
| [1659] | 706 | int sta=0; | 
|---|
| [3114] | 707 | fits_read_col(GetFitsPtr(),TFLOAT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta); | 
|---|
| [1659] | 708 | if(sta) { | 
|---|
| [2453] | 709 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 710 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<float>: Error Reading Fits file\n"); | 
|---|
| [1659] | 711 | } | 
|---|
|  | 712 |  | 
|---|
|  | 713 | return nread; | 
|---|
|  | 714 | } | 
|---|
|  | 715 |  | 
|---|
| [2170] | 716 | /*! idem before but for TVector of unsigned short */ | 
|---|
| [3128] | 717 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<uint_2>& data) | 
|---|
| [2170] | 718 | { | 
|---|
|  | 719 | if(n1<0 || n1>=NBline) | 
|---|
| [2449] | 720 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n"); | 
|---|
| [2170] | 721 | if(data.Size()<=0 && n2<n1) | 
|---|
| [2449] | 722 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n"); | 
|---|
| [2170] | 723 | if(n2<0) n2 = n1 + data.Size()-1; | 
|---|
|  | 724 | if(n2>=NBline) n2 = NBline-1; | 
|---|
|  | 725 |  | 
|---|
| [3128] | 726 | LONGLONG nread = n2-n1+1; | 
|---|
| [2170] | 727 | if(data.Size()<nread) data.SetSize(nread); | 
|---|
|  | 728 |  | 
|---|
|  | 729 | int sta=0; | 
|---|
| [3114] | 730 | fits_read_col(GetFitsPtr(),TUSHORT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta); | 
|---|
| [2170] | 731 | if(sta) { | 
|---|
| [2453] | 732 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 733 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<uint_2>: Error Reading Fits file\n"); | 
|---|
| [2170] | 734 | } | 
|---|
|  | 735 |  | 
|---|
|  | 736 | return nread; | 
|---|
|  | 737 | } | 
|---|
|  | 738 |  | 
|---|
| [1659] | 739 | /*! idem before but for TVector of int_4 */ | 
|---|
| [3128] | 740 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_4>& data) | 
|---|
| [1659] | 741 | { | 
|---|
|  | 742 | if(n1<0 || n1>=NBline) | 
|---|
| [2449] | 743 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n"); | 
|---|
| [1659] | 744 | if(data.Size()<=0 && n2<n1) | 
|---|
| [2449] | 745 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n"); | 
|---|
| [1659] | 746 | if(n2<0) n2 = n1 + data.Size()-1; | 
|---|
|  | 747 | if(n2>=NBline) n2 = NBline-1; | 
|---|
|  | 748 |  | 
|---|
| [3128] | 749 | LONGLONG nread = n2-n1+1; | 
|---|
| [1659] | 750 | if(data.Size()<nread) data.SetSize(nread); | 
|---|
|  | 751 |  | 
|---|
| [3128] | 752 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i); | 
|---|
| [1659] | 753 | int sta=0; | 
|---|
|  | 754 | int T = (sizeof(long)==4) ? TLONG: TINT; | 
|---|
| [3114] | 755 | fits_read_col(GetFitsPtr(),T,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta); | 
|---|
| [1659] | 756 | if(sta) { | 
|---|
| [2453] | 757 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 758 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_4>: Error Reading Fits file\n"); | 
|---|
| [1659] | 759 | } | 
|---|
|  | 760 |  | 
|---|
|  | 761 | return nread; | 
|---|
|  | 762 | } | 
|---|
|  | 763 |  | 
|---|
| [2169] | 764 | /*! idem before but for TVector of int_8 */ | 
|---|
| [3128] | 765 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_8>& data) | 
|---|
| [2169] | 766 | { | 
|---|
|  | 767 | #ifdef TLONGLONG | 
|---|
|  | 768 | if(n1<0 || n1>=NBline) | 
|---|
| [2449] | 769 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n"); | 
|---|
| [2169] | 770 | if(data.Size()<=0 && n2<n1) | 
|---|
| [2449] | 771 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n"); | 
|---|
| [2169] | 772 | if(n2<0) n2 = n1 + data.Size()-1; | 
|---|
|  | 773 | if(n2>=NBline) n2 = NBline-1; | 
|---|
|  | 774 |  | 
|---|
| [3128] | 775 | LONGLONG nread = n2-n1+1; | 
|---|
| [2169] | 776 | if(data.Size()<nread) data.SetSize(nread); | 
|---|
|  | 777 |  | 
|---|
|  | 778 | int sta=0; | 
|---|
| [3114] | 779 | fits_read_col(GetFitsPtr(),TLONGLONG,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta); | 
|---|
| [2169] | 780 | if(sta) { | 
|---|
| [2453] | 781 | FitsOpenFile::printerror(sta); | 
|---|
| [2449] | 782 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_8>: Error Reading Fits file\n"); | 
|---|
| [2169] | 783 | } | 
|---|
|  | 784 |  | 
|---|
|  | 785 | return nread; | 
|---|
|  | 786 | #else | 
|---|
| [2449] | 787 | throw PException("FitsABTColRd::Read(..,TVector<int_8>&) Not in that cfitsio version"); | 
|---|
| [2169] | 788 | #endif | 
|---|
|  | 789 | } | 
|---|
|  | 790 |  | 
|---|
| [1654] | 791 | ///////////////////////////////////////////////// | 
|---|
| [1659] | 792 | /*! | 
|---|
|  | 793 | Return the number of the first row where "val1"<=val<="val2" starting at row "rowstart" | 
|---|
|  | 794 | \verbatim | 
|---|
|  | 795 | - The search is performed from "rowstart" to the end | 
|---|
|  | 796 | in ascending order (from "rowstart" to nrows). | 
|---|
|  | 797 | - Warning: "rowstart<0" means "rowstart==0" (search all the table column) | 
|---|
|  | 798 | That is the default | 
|---|
|  | 799 | \endverbatim | 
|---|
|  | 800 | \return <0 means not found | 
|---|
|  | 801 | */ | 
|---|
| [3128] | 802 | LONGLONG FitsABTColRd::FirstRow(double val1,double val2,LONGLONG rowstart) | 
|---|
| [1659] | 803 | { | 
|---|
| [3128] | 804 | LONGLONG row = -1; | 
|---|
| [1659] | 805 | if(NBline==0) return row; | 
|---|
|  | 806 | // Change buffer for efficiency | 
|---|
|  | 807 | long bsens=BuffSens; bool bchange=false; | 
|---|
|  | 808 | if(bsens<=0) {ChangeBuffer(BuffLen,1); bchange=true;} | 
|---|
|  | 809 | if(rowstart<0) rowstart = 0; | 
|---|
|  | 810 | if(rowstart>=NBline) rowstart = NBline-1; | 
|---|
| [3128] | 811 | for(LONGLONG i=rowstart;i<NBline;i++) { | 
|---|
| [1659] | 812 | double val = Read(i); | 
|---|
|  | 813 | if(val<val1 || val>val2) continue; | 
|---|
|  | 814 | row = i; | 
|---|
|  | 815 | break; | 
|---|
|  | 816 | } | 
|---|
|  | 817 | if(bchange) ChangeBuffer(BuffLen,bsens); | 
|---|
|  | 818 | return row; | 
|---|
|  | 819 | } | 
|---|
|  | 820 |  | 
|---|
|  | 821 | /*! | 
|---|
|  | 822 | Return the number of the first row where val1<=val<=val2 starting at row rowstart | 
|---|
|  | 823 | \return <0 means not found | 
|---|
|  | 824 | \verbatim | 
|---|
|  | 825 | - The search is performed from "rowstart" to the beginning | 
|---|
|  | 826 | in descending order (from "rowstart" to 0). | 
|---|
|  | 827 | - Warning: "rowstart<0" means "rowstart==nrows-1" (search all the table column) | 
|---|
|  | 828 | That is the default | 
|---|
|  | 829 | \endverbatim | 
|---|
|  | 830 | */ | 
|---|
| [3128] | 831 | LONGLONG FitsABTColRd::LastRow(double val1,double val2,LONGLONG rowstart) | 
|---|
| [1659] | 832 | { | 
|---|
| [3128] | 833 | LONGLONG row = -1; | 
|---|
| [1659] | 834 | if(NBline==0) return row; | 
|---|
|  | 835 | // Change buffer for efficiency | 
|---|
|  | 836 | long bsens=BuffSens; bool bchange=false; | 
|---|
|  | 837 | if(bsens>=0) {ChangeBuffer(BuffLen,-1); bchange=true;} | 
|---|
|  | 838 | if(rowstart<0 || rowstart>=NBline) rowstart = NBline-1; | 
|---|
| [3128] | 839 | for(LONGLONG i=rowstart;i>=0;i--) { | 
|---|
| [1659] | 840 | double val = Read(i); | 
|---|
|  | 841 | if(val<val1 || val>val2) continue; | 
|---|
|  | 842 | row = i; | 
|---|
|  | 843 | break; | 
|---|
|  | 844 | } | 
|---|
|  | 845 | if(bchange) ChangeBuffer(BuffLen,bsens); | 
|---|
|  | 846 | return row; | 
|---|
|  | 847 | } | 
|---|
|  | 848 |  | 
|---|
| [1654] | 849 | /*! Print on stream os */ | 
|---|
| [2449] | 850 | void FitsABTColRd::Print(ostream& os,int lp) const | 
|---|
| [1654] | 851 | { | 
|---|
| [2449] | 852 | os<<"FitsABTColRd:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")" | 
|---|
| [1654] | 853 | <<" ncols="<<NBcol<<" nrows="<<NBline; | 
|---|
|  | 854 | if(lp>0) os<<" NRead="<<NFitsRead; | 
|---|
| [2456] | 855 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]" | 
|---|
|  | 856 | <<"\n... Label["<<ColNum<<"]="<<ColLabel<<" TypeCode="<<ColTypeCode | 
|---|
| [1654] | 857 | <<" TUnit="<<ColTUnit<<" TForm="<<ColTForm | 
|---|
|  | 858 | <<endl; | 
|---|
|  | 859 | } | 
|---|
| [2449] | 860 |  | 
|---|
|  | 861 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 862 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 863 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 864 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 865 |  | 
|---|
|  | 866 | //! Class for reading a column in a FITS ASCII or BINARY table with fits file opening | 
|---|
|  | 867 |  | 
|---|
|  | 868 | /*! | 
|---|
|  | 869 | \class SOPHYA::FitsABTColRead | 
|---|
|  | 870 | \ingroup FitsIOServer | 
|---|
| [2789] | 871 | Class for reading a column in a FITS ASCII or BINARY table with fits file opening. | 
|---|
|  | 872 | The FITS file is opened each time you instanciate a FitsABTColRead. | 
|---|
|  | 873 | So reading "n" columns of the same FITS table by instanciating "n" | 
|---|
|  | 874 | FitsABTColRead, will open "n" times te FITS file. | 
|---|
|  | 875 | Use FitsABTColRd if you want to open the FITS file only once. | 
|---|
| [2449] | 876 | \verbatim | 
|---|
|  | 877 | -- Exemple: | 
|---|
|  | 878 | FitsABTColRead fbt("myfits.fits","BoloMuv_28",0,1000,1,3); | 
|---|
|  | 879 | fbt.SetDebug(3); | 
|---|
|  | 880 | fbt.Print(3); | 
|---|
|  | 881 | // Read element by element | 
|---|
| [3128] | 882 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) { | 
|---|
| [2449] | 883 | double x = fbt.Read(i); | 
|---|
|  | 884 | if(i%lpmod==0) cout<<i<<": "<<x<<endl; | 
|---|
|  | 885 | } | 
|---|
|  | 886 | // Read into a vector | 
|---|
|  | 887 | TVector<double> data; | 
|---|
| [3128] | 888 | LONGLONG n = fbt.Read(32,50,data); | 
|---|
| [2449] | 889 | cout<<"Number of values read: "<<n<<endl; | 
|---|
|  | 890 | data.ReSize(100); | 
|---|
|  | 891 | n = fbt.Read(10,-1,data); | 
|---|
|  | 892 | cout<<"Number of values read: "<<n<<endl; | 
|---|
|  | 893 | \endverbatim | 
|---|
|  | 894 | */ | 
|---|
|  | 895 |  | 
|---|
|  | 896 |  | 
|---|
|  | 897 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 898 | /*! | 
|---|
|  | 899 | Constructor. | 
|---|
|  | 900 | \param fname : FITS file name to be read | 
|---|
|  | 901 | \param collabel : label of the column to be read | 
|---|
|  | 902 | \param ihdu : number of the HDU where the column is. | 
|---|
|  | 903 | \param blen : read buffer length | 
|---|
|  | 904 | \param bsens : buffer reading direction | 
|---|
|  | 905 | \param lp : debug level | 
|---|
|  | 906 | \verbatim | 
|---|
| [2456] | 907 | - if ihdu<=0 first BINARY or ASCII table is taken | 
|---|
|  | 908 | - if ihdu>nhdu ihdu is set to nhdu | 
|---|
| [2449] | 909 | - bsens>0    read forward | 
|---|
|  | 910 | bsens<0    read backward | 
|---|
|  | 911 | bsens==0   read centered | 
|---|
|  | 912 | \endverbatim | 
|---|
|  | 913 | \warning ihdu = [1,nhdu] | 
|---|
|  | 914 | */ | 
|---|
|  | 915 | FitsABTColRead::FitsABTColRead(string fname,string collabel | 
|---|
|  | 916 | ,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 917 | : FitsABTColRd(new FitsOpenFile(fname),collabel,ihdu,blen,bsens,lp) | 
|---|
|  | 918 | { | 
|---|
|  | 919 | } | 
|---|
|  | 920 |  | 
|---|
|  | 921 | /*! | 
|---|
|  | 922 | Constructor. | 
|---|
|  | 923 | Same as before but the column is identified by its column number | 
|---|
|  | 924 | \param colnum : number of the column to be read | 
|---|
|  | 925 | \warning col = [0,ncol[ | 
|---|
|  | 926 | */ | 
|---|
|  | 927 | FitsABTColRead::FitsABTColRead(string fname,int colnum | 
|---|
|  | 928 | ,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 929 | : FitsABTColRd(new FitsOpenFile(fname),colnum,ihdu,blen,bsens,lp) | 
|---|
|  | 930 | { | 
|---|
|  | 931 | } | 
|---|
|  | 932 |  | 
|---|
|  | 933 | /*! Constructor. see below */ | 
|---|
|  | 934 | FitsABTColRead::FitsABTColRead(const char * cfname,const char* collabel | 
|---|
|  | 935 | ,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 936 | : FitsABTColRd(new FitsOpenFile(cfname),collabel,ihdu,blen,bsens,lp) | 
|---|
|  | 937 | { | 
|---|
|  | 938 | } | 
|---|
|  | 939 |  | 
|---|
|  | 940 | /*! Constructor. see below */ | 
|---|
|  | 941 | FitsABTColRead::FitsABTColRead(const char * cfname,int colnum | 
|---|
|  | 942 | ,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 943 | : FitsABTColRd(new FitsOpenFile(cfname),colnum,ihdu,blen,bsens,lp) | 
|---|
|  | 944 | { | 
|---|
|  | 945 | } | 
|---|
|  | 946 | /*! Constructor by default */ | 
|---|
|  | 947 | FitsABTColRead::FitsABTColRead() | 
|---|
| [2791] | 948 | : FitsABTColRd() | 
|---|
| [2449] | 949 | { | 
|---|
|  | 950 | } | 
|---|
|  | 951 |  | 
|---|
|  | 952 | /*! Constructor by copy */ | 
|---|
|  | 953 | FitsABTColRead::FitsABTColRead(FitsABTColRead& fbt) | 
|---|
|  | 954 | { | 
|---|
|  | 955 | // --- ATTENTION --- | 
|---|
|  | 956 | // FitsABTColRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile | 
|---|
|  | 957 | FitsOpenFile* fof = new FitsOpenFile(*fbt.GetFitsOpenFile()); | 
|---|
|  | 958 | Init(fof,fbt.GetColLabel().c_str() | 
|---|
| [2456] | 959 | ,fbt.GetColNum(),fbt.HDU() | 
|---|
| [2449] | 960 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel); | 
|---|
|  | 961 | } | 
|---|
|  | 962 |  | 
|---|
|  | 963 | /*! Destructor. */ | 
|---|
|  | 964 | FitsABTColRead::~FitsABTColRead() | 
|---|
|  | 965 | { | 
|---|
| [2789] | 966 | Delete(); // ?? inutile ?? | 
|---|
|  | 967 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS | 
|---|
| [2449] | 968 | if(FitsOF!=NULL) delete FitsOF; | 
|---|
|  | 969 | } | 
|---|
| [2453] | 970 |  | 
|---|
|  | 971 | /////////////////////////////////////////////////////////////////// | 
|---|
| [2791] | 972 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 973 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 974 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 975 |  | 
|---|
| [3660] | 976 | FitsABTColRd1F::FitsABTColRd1F(FitsOpenFile* fof,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 977 | { | 
|---|
|  | 978 | Init(fof,ihdu,blen,bsens,lp); | 
|---|
|  | 979 | } | 
|---|
|  | 980 |  | 
|---|
|  | 981 | /*! Init routine called by the constructor */ | 
|---|
|  | 982 | void FitsABTColRd1F::Init(FitsOpenFile* fof,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 983 | { | 
|---|
|  | 984 | // Initialisation des Parametres Generaux | 
|---|
|  | 985 | ColLabel.resize(0); ColTUnit.resize(0); ColTForm.resize(0); ColTypeCode.resize(0); | 
|---|
|  | 986 | NBcol = 0; NBline = 0; | 
|---|
|  | 987 | SetNulVal(); SetDebug(lp); | 
|---|
|  | 988 | FitsOF = NULL; | 
|---|
|  | 989 | LineDeb.resize(0); LineFin.resize(0); | 
|---|
|  | 990 | Buffer = NULL; | 
|---|
|  | 991 |  | 
|---|
|  | 992 | // Caracteristiques du FitsOpenFile | 
|---|
|  | 993 | FitsOF = fof; | 
|---|
|  | 994 | if(FitsOF==NULL) | 
|---|
|  | 995 | throw NullPtrError("FitsABTColRd1F::Init: FitsOpenFile pointer is NULL\n"); | 
|---|
|  | 996 |  | 
|---|
|  | 997 | if(GetFitsPtr()==NULL) | 
|---|
|  | 998 | throw NullPtrError("FitsABTColRd1F::Init: FitsPtr pointer is NULL\n"); | 
|---|
|  | 999 |  | 
|---|
|  | 1000 | int sta = 0; | 
|---|
|  | 1001 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU(); | 
|---|
|  | 1002 |  | 
|---|
|  | 1003 | // Get HDU for bin/ascii table | 
|---|
|  | 1004 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU, | 
|---|
|  | 1005 | // une classe utilisant ce fichier doit le positionner sur un HDU. | 
|---|
|  | 1006 | // Par contre, si une autre classe utilise ce meme FitsOpenFile, | 
|---|
|  | 1007 | // elle ne peut le positionner que sur ce meme HDU ! | 
|---|
|  | 1008 | if(FitsOF->GetPosStatus()==false) { | 
|---|
|  | 1009 | if(ihdu==0) { // find the first BINARY then the first ASCII | 
|---|
|  | 1010 | int rc = FitsOF->MoveToFirst(BINARY_TBL); | 
|---|
|  | 1011 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL); | 
|---|
|  | 1012 | } else { | 
|---|
|  | 1013 | int rc = FitsOF->MoveToHDU(ihdu); | 
|---|
|  | 1014 | if(rc!=ihdu) | 
|---|
|  | 1015 | throw RangeCheckError("FitsABTColRd1F::Init: Error moving to requested HDU\n"); | 
|---|
|  | 1016 | } | 
|---|
|  | 1017 | } else { // Fits file has already been positionned | 
|---|
|  | 1018 | if(ihdu>0 && ihdu!=HDU()) | 
|---|
|  | 1019 | throw RangeCheckError("FitsABTColRd1F::Init: file already posit. at another HDU\n"); | 
|---|
|  | 1020 | } | 
|---|
|  | 1021 |  | 
|---|
|  | 1022 | // Check HDUType and set position status to TRUE | 
|---|
|  | 1023 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL) | 
|---|
|  | 1024 | throw TypeMismatchExc("FitsABTColRd1F::Init: HDU not ASCII/BINARY table\n"); | 
|---|
|  | 1025 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl; | 
|---|
|  | 1026 | FitsOF->SetPosStatus(true); | 
|---|
|  | 1027 |  | 
|---|
|  | 1028 | // Get number of columns | 
|---|
|  | 1029 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) { | 
|---|
|  | 1030 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1031 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of columns\n"); | 
|---|
|  | 1032 | } | 
|---|
|  | 1033 | if(DbgLevel>1) cout<<"...Init  NBcol="<<NBcol<<endl; | 
|---|
|  | 1034 | if(NBcol<1) | 
|---|
|  | 1035 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of colums\n"); | 
|---|
|  | 1036 |  | 
|---|
|  | 1037 | // Get number of rows | 
|---|
|  | 1038 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) { | 
|---|
|  | 1039 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1040 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of rows\n"); | 
|---|
|  | 1041 | } | 
|---|
|  | 1042 | if(DbgLevel>1) cout<<"...Init  NBline="<<NBline<<endl; | 
|---|
|  | 1043 | if(NBline<1) | 
|---|
|  | 1044 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of rows\n"); | 
|---|
|  | 1045 |  | 
|---|
|  | 1046 | // --- Boucle sur les colonnes | 
|---|
|  | 1047 | for(int ColNum=0;ColNum<NBcol;ColNum++) {   // ***** ColNum | 
|---|
|  | 1048 | // Get column type | 
|---|
|  | 1049 | ColTypeCode.push_back(-999); | 
|---|
|  | 1050 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode[ColNum],NULL,NULL,&sta)) { | 
|---|
|  | 1051 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1052 | throw ParmError("FitsABTColRd1F::Init: Error getting column type\n"); | 
|---|
|  | 1053 | } | 
|---|
|  | 1054 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode[ColNum]<<endl; | 
|---|
|  | 1055 | if(ColTypeCode[ColNum]==TSTRING || ColTypeCode[ColNum]==TCOMPLEX | 
|---|
|  | 1056 | ||  ColTypeCode[ColNum]==TDBLCOMPLEX || ColTypeCode[ColNum]<0 ) | 
|---|
|  | 1057 | throw ParmError("FitsABTColRd1F::Init: Selected column is not Numerical\n"); | 
|---|
|  | 1058 | // Get column name, tunit, tform | 
|---|
|  | 1059 | char labelcol[128]; | 
|---|
|  | 1060 | char tunit[64], tform[64], tdisp[64]; | 
|---|
|  | 1061 | LONGLONG repeat=0; double tscale=1., tzero=0.; | 
|---|
|  | 1062 | int rc=0; | 
|---|
|  | 1063 | if(HDUType()==BINARY_TBL) { | 
|---|
|  | 1064 | fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform | 
|---|
|  | 1065 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta); | 
|---|
|  | 1066 | } else { | 
|---|
|  | 1067 | long repeatlng; | 
|---|
|  | 1068 | fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform | 
|---|
|  | 1069 | ,&tscale,&tzero,NULL,tdisp,&sta); | 
|---|
|  | 1070 | repeat = repeatlng; | 
|---|
|  | 1071 | } | 
|---|
|  | 1072 | if(rc) { | 
|---|
|  | 1073 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1074 | throw RangeCheckError("FitsABTColRd1F::Init: Error getting the column caracteristics\n"); | 
|---|
|  | 1075 | } | 
|---|
|  | 1076 | ColLabel.push_back(labelcol); | 
|---|
|  | 1077 | ColTUnit.push_back(tunit); | 
|---|
|  | 1078 | ColTForm.push_back(tform); | 
|---|
|  | 1079 | // fill the default buffer limits at init | 
|---|
|  | 1080 | LineDeb.push_back(-1); | 
|---|
|  | 1081 | LineFin.push_back(-1); | 
|---|
|  | 1082 | // some debug print if requested | 
|---|
|  | 1083 | if(DbgLevel) | 
|---|
|  | 1084 | cout<<"FitsABTColRd1F::Init Num="<<ColNum<<" Label="<<ColLabel[ColNum] | 
|---|
|  | 1085 | <<" TypeCode="<<ColTypeCode[ColNum]<<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum]<<endl; | 
|---|
|  | 1086 | if(DbgLevel>1) | 
|---|
|  | 1087 | cout<<"      (repeat="<<repeat<<",tscale="<<tscale<<",tzero="<<tzero | 
|---|
|  | 1088 | <<",tdisp="<<tdisp<<")"<<endl; | 
|---|
|  | 1089 | }   // ***** ColNum | 
|---|
|  | 1090 |  | 
|---|
|  | 1091 | // Set the buffer for reading | 
|---|
|  | 1092 | ChangeBuffer(blen,bsens); | 
|---|
|  | 1093 |  | 
|---|
|  | 1094 | } | 
|---|
|  | 1095 |  | 
|---|
|  | 1096 | /*! Destructor. */ | 
|---|
|  | 1097 | FitsABTColRd1F::~FitsABTColRd1F() | 
|---|
|  | 1098 | { | 
|---|
|  | 1099 | Delete(); | 
|---|
|  | 1100 | } | 
|---|
|  | 1101 |  | 
|---|
|  | 1102 | /*! Delete called by the destructor */ | 
|---|
|  | 1103 | void FitsABTColRd1F::Delete(void) | 
|---|
|  | 1104 | { | 
|---|
|  | 1105 | if(NBcol>0  && Buffer!=NULL) { | 
|---|
|  | 1106 | for(int ColNum=0; ColNum<NBcol; ColNum++) | 
|---|
|  | 1107 | if(Buffer[ColNum]!=NULL) delete [] Buffer[ColNum]; | 
|---|
|  | 1108 | delete [] Buffer; Buffer=NULL; | 
|---|
|  | 1109 | } | 
|---|
|  | 1110 | LineDeb.resize(0); LineFin.resize(0); | 
|---|
|  | 1111 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!! | 
|---|
|  | 1112 | } | 
|---|
|  | 1113 |  | 
|---|
|  | 1114 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1115 | /*! Change the buffer caracteristiques (see creator) */ | 
|---|
|  | 1116 | void FitsABTColRd1F::ChangeBuffer(long blen,long bsens) | 
|---|
|  | 1117 | { | 
|---|
|  | 1118 | long oldnbuffer = NBuffer; | 
|---|
|  | 1119 |  | 
|---|
|  | 1120 | // Compute buffer caracteristics | 
|---|
|  | 1121 | BuffLen = (blen<=0)? 1: blen; | 
|---|
|  | 1122 | BuffSens = bsens; | 
|---|
|  | 1123 | NBuffer = BuffLen; | 
|---|
|  | 1124 | if(bsens==0 && NBuffer%2==0) NBuffer++; | 
|---|
|  | 1125 |  | 
|---|
|  | 1126 | // De-allocate if necessary | 
|---|
|  | 1127 | if(Buffer!=NULL) { | 
|---|
|  | 1128 | // On des-alloue si pas assez de place | 
|---|
|  | 1129 | // ou si l'ancienne place est beaucoup trop grande (>25%) | 
|---|
|  | 1130 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) ) { | 
|---|
|  | 1131 | for(int ColNum=0; ColNum<NBcol; ColNum++) if(Buffer[ColNum]!=NULL) delete [] Buffer[ColNum]; | 
|---|
|  | 1132 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;} | 
|---|
|  | 1133 | } | 
|---|
|  | 1134 | } | 
|---|
|  | 1135 |  | 
|---|
|  | 1136 | // Re-allocate | 
|---|
|  | 1137 | if(Buffer==NULL) { | 
|---|
|  | 1138 | Buffer = new double*[NBcol]; | 
|---|
|  | 1139 | for(int ColNum=0; ColNum<NBcol; ColNum++) Buffer[ColNum] = new double[NBuffer]; | 
|---|
|  | 1140 | } | 
|---|
|  | 1141 |  | 
|---|
|  | 1142 | // Tell program that nothing is into buffer | 
|---|
|  | 1143 | for(int ColNum=0; ColNum<NBcol; ColNum++) LineDeb[ColNum] = LineFin[ColNum] = -1; | 
|---|
|  | 1144 | } | 
|---|
|  | 1145 |  | 
|---|
|  | 1146 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1147 | /*! | 
|---|
|  | 1148 | Read a fitsheader key into double | 
|---|
|  | 1149 | \param keyname : name of the key | 
|---|
|  | 1150 | \return value into double | 
|---|
|  | 1151 | */ | 
|---|
|  | 1152 | double FitsABTColRd1F::ReadKey(const char *keyname) | 
|---|
|  | 1153 | { | 
|---|
|  | 1154 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname); | 
|---|
|  | 1155 | } | 
|---|
|  | 1156 |  | 
|---|
|  | 1157 | /*! | 
|---|
|  | 1158 | Read a fitsheader key into long | 
|---|
|  | 1159 | \param keyname : name of the key | 
|---|
|  | 1160 | \return value into long | 
|---|
|  | 1161 | */ | 
|---|
|  | 1162 | long FitsABTColRd1F::ReadKeyL(const char *keyname) | 
|---|
|  | 1163 | { | 
|---|
|  | 1164 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname); | 
|---|
|  | 1165 | } | 
|---|
|  | 1166 |  | 
|---|
|  | 1167 | /*! | 
|---|
|  | 1168 | Read a fitsheader key into long long | 
|---|
|  | 1169 | \param keyname : name of the key | 
|---|
|  | 1170 | \return value into long long | 
|---|
|  | 1171 | */ | 
|---|
|  | 1172 | LONGLONG FitsABTColRd1F::ReadKeyLL(const char *keyname) | 
|---|
|  | 1173 | { | 
|---|
|  | 1174 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname); | 
|---|
|  | 1175 | } | 
|---|
|  | 1176 |  | 
|---|
|  | 1177 | /*! | 
|---|
|  | 1178 | Read a fitsheader key into string | 
|---|
|  | 1179 | \param keyname : name of the key | 
|---|
|  | 1180 | \return value into string | 
|---|
|  | 1181 | */ | 
|---|
|  | 1182 | string FitsABTColRd1F::ReadKeyS(const char *keyname) | 
|---|
|  | 1183 | { | 
|---|
|  | 1184 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname); | 
|---|
|  | 1185 | } | 
|---|
|  | 1186 |  | 
|---|
|  | 1187 | ///////////////////////////////////////////////// | 
|---|
|  | 1188 | int FitsABTColRd1F::GetColNum(const char *colname) | 
|---|
|  | 1189 | // Get column number from column name | 
|---|
|  | 1190 | { | 
|---|
|  | 1191 | if(strlen(colname)<1 || NBcol<1) return -1; | 
|---|
|  | 1192 | string slab(colname); | 
|---|
|  | 1193 | for(int ColNum=0;ColNum<NBcol;ColNum++) | 
|---|
|  | 1194 | if(slab == ColLabel[ColNum]) return ColNum; | 
|---|
|  | 1195 | return -1; | 
|---|
|  | 1196 | } | 
|---|
|  | 1197 |  | 
|---|
|  | 1198 | ///////////////////////////////////////////////// | 
|---|
|  | 1199 | /*! | 
|---|
|  | 1200 | Read row "n" of column "ColNum" and return the value into a double | 
|---|
|  | 1201 | \warning be carefull for the range: row = [0,NRows[ | 
|---|
|  | 1202 | \return value in double | 
|---|
|  | 1203 | \param n : number of the row to be read. | 
|---|
|  | 1204 | \verbatim | 
|---|
|  | 1205 | usebuffer == true  : use read optimisation with bufferisation | 
|---|
|  | 1206 | == false : no optimisation with bufferisation | 
|---|
|  | 1207 | just read one value | 
|---|
|  | 1208 | \endverbatim | 
|---|
|  | 1209 | */ | 
|---|
|  | 1210 | double FitsABTColRd1F::Read(int ColNum,LONGLONG n,bool usebuffer) | 
|---|
|  | 1211 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline] | 
|---|
|  | 1212 | // Attention: colnum  [0,NBcol[ , cfistio veut [1,NBcol] | 
|---|
|  | 1213 | { | 
|---|
|  | 1214 | int sta=0; | 
|---|
|  | 1215 | if(ColNum<0 || ColNum>=NBcol) | 
|---|
|  | 1216 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside column range\n"); | 
|---|
|  | 1217 | if(n<0 || n>=NBline) | 
|---|
|  | 1218 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside line range\n"); | 
|---|
|  | 1219 |  | 
|---|
|  | 1220 | // Pas de bufferisation, on lit betement | 
|---|
|  | 1221 | if(NBuffer==1 || !usebuffer) { | 
|---|
|  | 1222 | double val; | 
|---|
|  | 1223 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,1,1,NULL,&val,NULL,&sta); | 
|---|
|  | 1224 | if(sta) { | 
|---|
|  | 1225 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1226 | throw NotAvailableOperation("FitsABTColRd1F::Read: Error Reading Fits file\n"); | 
|---|
|  | 1227 | } | 
|---|
|  | 1228 | // On ne remplit Buffer[ColNum][0] que si on a choisit | 
|---|
|  | 1229 | // un mode de lecture non bufferise (n==1) DES LE DEBUT. | 
|---|
|  | 1230 | // Si on a initialement choisit un mode bufferise (avec n>1), | 
|---|
|  | 1231 | // Buffer contient les valeurs chargees auparavent. | 
|---|
|  | 1232 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;} | 
|---|
|  | 1233 | // car on perd l'info de ces valeurs. | 
|---|
|  | 1234 | if(NBuffer==1) {Buffer[ColNum][0]=val; LineDeb[ColNum]=LineFin[ColNum]=n;} | 
|---|
|  | 1235 | return val; | 
|---|
|  | 1236 | } | 
|---|
|  | 1237 |  | 
|---|
|  | 1238 | // Gestion avec bufferisation | 
|---|
|  | 1239 | if(!Buffer) | 
|---|
|  | 1240 | throw RangeCheckError("FitsABTColRd1F::Read: Buffer not allocated\n"); | 
|---|
|  | 1241 | if(n<LineDeb[ColNum] || n>LineFin[ColNum]) { | 
|---|
|  | 1242 | LONGLONG row1,row2,nrow; | 
|---|
|  | 1243 | if(BuffSens>0) { // Cas remplissage forward | 
|---|
|  | 1244 | row1 = n+1; | 
|---|
|  | 1245 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline; | 
|---|
|  | 1246 | } else if(BuffSens<0) { // Cas remplissage backward | 
|---|
|  | 1247 | row2 = n+1; | 
|---|
|  | 1248 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1; | 
|---|
|  | 1249 | } else { // Cas remplissage centre | 
|---|
|  | 1250 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1; | 
|---|
|  | 1251 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline; | 
|---|
|  | 1252 | } | 
|---|
|  | 1253 | nrow = row2 - row1 + 1; | 
|---|
|  | 1254 | LineDeb[ColNum] = row1-1; LineFin[ColNum] = row2-1; | 
|---|
|  | 1255 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow | 
|---|
|  | 1256 | //    <<" LineDeb,Fin="<<LineDeb[ColNum]<<","<<LineFin[ColNum]<<endl; | 
|---|
|  | 1257 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer[ColNum],NULL,&sta); | 
|---|
|  | 1258 | if(sta) { | 
|---|
|  | 1259 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1260 | LineDeb[ColNum] = LineFin[ColNum] = -1; | 
|---|
|  | 1261 | throw NotAvailableOperation("FitsABTColRd1F::Read: Error Reading Fits file\n"); | 
|---|
|  | 1262 | } | 
|---|
|  | 1263 | } | 
|---|
|  | 1264 |  | 
|---|
|  | 1265 | long ibuf = n-LineDeb[ColNum]; | 
|---|
|  | 1266 | return Buffer[ColNum][ibuf]; | 
|---|
|  | 1267 | } | 
|---|
|  | 1268 |  | 
|---|
|  | 1269 |  | 
|---|
|  | 1270 | /*! Print on stream os */ | 
|---|
|  | 1271 | void FitsABTColRd1F::Print(ostream& os,int lp) const | 
|---|
|  | 1272 | { | 
|---|
|  | 1273 | os<<"FitsABTColRd1F:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")" | 
|---|
|  | 1274 | <<" ncols="<<NBcol<<" nrows="<<NBline; | 
|---|
|  | 1275 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"<<endl; | 
|---|
|  | 1276 | if(lp>0 && NBcol>0) { | 
|---|
|  | 1277 | for(int ColNum=0;ColNum<NBcol;ColNum++) { | 
|---|
|  | 1278 | os<<"..Col="<<ColNum<<" Label="<<ColLabel[ColNum]<<" TypeCode="<<ColTypeCode[ColNum] | 
|---|
|  | 1279 | <<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum] | 
|---|
|  | 1280 | <<endl; | 
|---|
|  | 1281 | } | 
|---|
|  | 1282 | } | 
|---|
|  | 1283 | } | 
|---|
|  | 1284 |  | 
|---|
|  | 1285 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1286 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1287 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1288 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1289 |  | 
|---|
|  | 1290 | /*! | 
|---|
|  | 1291 | Constructor. | 
|---|
|  | 1292 | Same as before but the column is identified by its column number | 
|---|
|  | 1293 | \param colnum : number of the column to be read | 
|---|
|  | 1294 | \warning col = [0,ncol[ | 
|---|
|  | 1295 | */ | 
|---|
|  | 1296 | FitsABTColRead1F::FitsABTColRead1F(string fname,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 1297 | : FitsABTColRd1F(new FitsOpenFile(fname),ihdu,blen,bsens,lp) | 
|---|
|  | 1298 | { | 
|---|
|  | 1299 | } | 
|---|
|  | 1300 |  | 
|---|
|  | 1301 | /*! Constructor. see below */ | 
|---|
|  | 1302 | FitsABTColRead1F::FitsABTColRead1F(const char * cfname,int ihdu,long blen,long bsens,int lp) | 
|---|
|  | 1303 | : FitsABTColRd1F(new FitsOpenFile(cfname),ihdu,blen,bsens,lp) | 
|---|
|  | 1304 | { | 
|---|
|  | 1305 | } | 
|---|
|  | 1306 |  | 
|---|
|  | 1307 | /*! Destructor. */ | 
|---|
|  | 1308 | FitsABTColRead1F::~FitsABTColRead1F() | 
|---|
|  | 1309 | { | 
|---|
|  | 1310 | Delete(); // ?? inutile ?? | 
|---|
|  | 1311 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS | 
|---|
|  | 1312 | if(FitsOF!=NULL) delete FitsOF; | 
|---|
|  | 1313 | } | 
|---|
|  | 1314 |  | 
|---|
|  | 1315 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1316 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1317 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1318 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1319 |  | 
|---|
| [2453] | 1320 | //! Class for reading a 2D image from a FITS file | 
|---|
|  | 1321 |  | 
|---|
|  | 1322 | /*! | 
|---|
|  | 1323 | \class SOPHYA::FitsImg2DRd | 
|---|
|  | 1324 | \ingroup FitsIOServer | 
|---|
|  | 1325 | Class for reading a 2D image from a FITS file | 
|---|
|  | 1326 | */ | 
|---|
|  | 1327 |  | 
|---|
|  | 1328 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1329 | /*! | 
|---|
|  | 1330 | Constructor. | 
|---|
|  | 1331 | \param fof : Pointer to the Class for opening the FITS file | 
|---|
| [2456] | 1332 | \param ihdu : number of the HDU where the image is. | 
|---|
| [2453] | 1333 | \param lp : debug level | 
|---|
|  | 1334 | \verbatim | 
|---|
| [2456] | 1335 | - if ihdu<=0 first IMAGE hdu is taken | 
|---|
|  | 1336 | - if ihdu>nhdu ihdu is set to nhdu | 
|---|
| [2453] | 1337 | \endverbatim | 
|---|
|  | 1338 | \warning ihdu = [1,nhdu] | 
|---|
|  | 1339 | */ | 
|---|
|  | 1340 | FitsImg2DRd::FitsImg2DRd(FitsOpenFile* fof,int ihdu,int lp) | 
|---|
|  | 1341 | { | 
|---|
|  | 1342 | Init(fof,ihdu,lp); | 
|---|
|  | 1343 | } | 
|---|
|  | 1344 |  | 
|---|
|  | 1345 | /*! Constructor by copy */ | 
|---|
|  | 1346 | FitsImg2DRd::FitsImg2DRd(FitsImg2DRd& fbt) | 
|---|
|  | 1347 | { | 
|---|
| [2456] | 1348 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel); | 
|---|
| [2453] | 1349 | } | 
|---|
|  | 1350 |  | 
|---|
|  | 1351 | /*! Constructor by default */ | 
|---|
|  | 1352 | FitsImg2DRd::FitsImg2DRd() | 
|---|
|  | 1353 | { | 
|---|
|  | 1354 | Naxis[0] = Naxis[1] = 0; | 
|---|
|  | 1355 | SetNulVal(); SetDebug(0); | 
|---|
| [3114] | 1356 | FitsOF = NULL; | 
|---|
| [2453] | 1357 | } | 
|---|
|  | 1358 |  | 
|---|
|  | 1359 | /*! Init routine called by the constructor */ | 
|---|
|  | 1360 | void FitsImg2DRd::Init(FitsOpenFile* fof,int ihdu,int lp) | 
|---|
|  | 1361 | { | 
|---|
|  | 1362 | // Initialisation des Parametres Generaux | 
|---|
|  | 1363 | Naxis[0] = Naxis[1] = 0; | 
|---|
|  | 1364 | SetNulVal(); SetDebug(lp); | 
|---|
| [3114] | 1365 | FitsOF = NULL; | 
|---|
| [2453] | 1366 |  | 
|---|
|  | 1367 | // Caracteristiques du FitsOpenFile | 
|---|
|  | 1368 | FitsOF = fof; | 
|---|
|  | 1369 | if(FitsOF==NULL) | 
|---|
|  | 1370 | throw NullPtrError("FitsImg2DRd::Init: FitsOpenFile pointer is NULL\n"); | 
|---|
| [2456] | 1371 |  | 
|---|
| [3114] | 1372 | if(GetFitsPtr()==NULL) | 
|---|
| [2453] | 1373 | throw NullPtrError("FitsImg2DRd::Init: FitsPtr pointer is NULL\n"); | 
|---|
|  | 1374 |  | 
|---|
|  | 1375 | int sta = 0; | 
|---|
| [2456] | 1376 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU(); | 
|---|
| [2453] | 1377 |  | 
|---|
|  | 1378 | // Get HDU 2D image | 
|---|
| [2456] | 1379 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init() | 
|---|
|  | 1380 | if(FitsOF->GetPosStatus()==false) { | 
|---|
|  | 1381 | if(ihdu==0) { // find the first IMAGE_HDU | 
|---|
|  | 1382 | FitsOF->MoveToFirst(IMAGE_HDU); | 
|---|
|  | 1383 | } else { | 
|---|
|  | 1384 | int rc = FitsOF->MoveToHDU(ihdu); | 
|---|
|  | 1385 | if(rc!=ihdu) | 
|---|
| [3114] | 1386 | throw RangeCheckError("FitsImg2DRd::Init: Error moving to requested HDU\n"); | 
|---|
| [2453] | 1387 | } | 
|---|
| [2456] | 1388 | } else { // Fits file has already been positionned | 
|---|
|  | 1389 | if(ihdu>0 && ihdu!=HDU()) | 
|---|
| [3114] | 1390 | throw RangeCheckError("FitsImg2DRd::Init: file already posit. at another HDU\n"); | 
|---|
| [2453] | 1391 | } | 
|---|
| [2456] | 1392 |  | 
|---|
|  | 1393 | // Check HDUType and set position status to TRUE | 
|---|
|  | 1394 | if(HDUType()!=IMAGE_HDU) | 
|---|
| [2453] | 1395 | throw TypeMismatchExc("FitsImg2DRd::Init: HDU not IMAGE_HDU\n"); | 
|---|
| [2456] | 1396 | FitsOF->SetPosStatus(true); | 
|---|
| [2453] | 1397 |  | 
|---|
|  | 1398 | // Get NAXIS 1 et 2 | 
|---|
|  | 1399 | int nfound=0; | 
|---|
| [3128] | 1400 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h | 
|---|
|  | 1401 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,2,Naxis,&nfound,&sta)) { | 
|---|
| [2453] | 1402 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1403 | throw RangeCheckError("FitsImg2DRd::Init: Error reading NAXIS cards\n"); | 
|---|
|  | 1404 | } | 
|---|
|  | 1405 | if(DbgLevel>1) | 
|---|
| [2456] | 1406 | cout<<"...Init(hdu="<<HDU()<<")  NAXIS1="<<Naxis[0]<<" NAXIS2=" | 
|---|
|  | 1407 | <<Naxis[1]<<" (nfound="<<nfound<<")"<<endl; | 
|---|
| [2453] | 1408 | if(nfound!=2 || Naxis[0]<=0 || Naxis[1]<=0) | 
|---|
|  | 1409 | throw NotAvailableOperation("FitsImg2DRd::Init: bad Naxis[0-1] value\n"); | 
|---|
|  | 1410 |  | 
|---|
|  | 1411 | } | 
|---|
|  | 1412 |  | 
|---|
|  | 1413 | /*! Destructor. */ | 
|---|
|  | 1414 | FitsImg2DRd::~FitsImg2DRd() | 
|---|
|  | 1415 | { | 
|---|
|  | 1416 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!! | 
|---|
|  | 1417 | Naxis[0] = Naxis[1] = 0; | 
|---|
|  | 1418 | } | 
|---|
|  | 1419 |  | 
|---|
|  | 1420 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1421 | /*! | 
|---|
|  | 1422 | Read a fitsheader key into double | 
|---|
|  | 1423 | \param keyname : name of the key | 
|---|
|  | 1424 | \return value into double | 
|---|
|  | 1425 | */ | 
|---|
| [3572] | 1426 | double FitsImg2DRd::ReadKey(const char *keyname) | 
|---|
| [2453] | 1427 | { | 
|---|
| [3114] | 1428 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname); | 
|---|
| [2453] | 1429 | } | 
|---|
|  | 1430 |  | 
|---|
|  | 1431 | /*! | 
|---|
|  | 1432 | Read a fitsheader key into long | 
|---|
|  | 1433 | \param keyname : name of the key | 
|---|
|  | 1434 | \return value into long | 
|---|
|  | 1435 | */ | 
|---|
| [3572] | 1436 | long FitsImg2DRd::ReadKeyL(const char *keyname) | 
|---|
| [2453] | 1437 | { | 
|---|
| [3114] | 1438 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname); | 
|---|
| [2453] | 1439 | } | 
|---|
|  | 1440 |  | 
|---|
|  | 1441 | /*! | 
|---|
| [3128] | 1442 | Read a fitsheader key into long long | 
|---|
|  | 1443 | \param keyname : name of the key | 
|---|
|  | 1444 | \return value into long long | 
|---|
|  | 1445 | */ | 
|---|
| [3572] | 1446 | LONGLONG FitsImg2DRd::ReadKeyLL(const char *keyname) | 
|---|
| [3128] | 1447 | { | 
|---|
|  | 1448 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname); | 
|---|
|  | 1449 | } | 
|---|
|  | 1450 |  | 
|---|
|  | 1451 | /*! | 
|---|
| [2453] | 1452 | Read a fitsheader key into string | 
|---|
|  | 1453 | \param keyname : name of the key | 
|---|
|  | 1454 | \return value into string | 
|---|
|  | 1455 | */ | 
|---|
| [3572] | 1456 | string FitsImg2DRd::ReadKeyS(const char *keyname) | 
|---|
| [2453] | 1457 | { | 
|---|
| [3114] | 1458 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname); | 
|---|
| [2453] | 1459 | } | 
|---|
|  | 1460 |  | 
|---|
|  | 1461 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1462 | /* REMARQUE: | 
|---|
|  | 1463 | * Si une image FITS a NAXIS1=100 et NAXIS2=50 | 
|---|
|  | 1464 | * alors un tableau 2D juste assez grand pour contenir l'image | 
|---|
|  | 1465 | * doit etre declare array[50][100] (et non pas array[100][50]) | 
|---|
|  | 1466 | *                   array[NAXIS2][NAXIS1] | 
|---|
|  | 1467 | */ | 
|---|
|  | 1468 | /*! | 
|---|
|  | 1469 | Read image into a TMatrix<uint_2> | 
|---|
|  | 1470 | \warning TMatrix data(Naxis2,Naxis1) | 
|---|
|  | 1471 | */ | 
|---|
| [3128] | 1472 | LONGLONG FitsImg2DRd::Read(TMatrix<uint_2>& data) | 
|---|
| [2453] | 1473 | { | 
|---|
|  | 1474 | int sta=0; | 
|---|
|  | 1475 | uint_2* arr = new uint_2[Naxis[0]]; | 
|---|
|  | 1476 | data.ReSize(Naxis[1],Naxis[0]); | 
|---|
|  | 1477 |  | 
|---|
| [3128] | 1478 | for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1479 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0]; | 
|---|
| [3114] | 1480 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
| [2453] | 1481 | if(sta) { | 
|---|
|  | 1482 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1483 | throw | 
|---|
|  | 1484 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<uint_2>): Error Reading Fits file\n"); | 
|---|
|  | 1485 | } | 
|---|
| [3128] | 1486 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i]; | 
|---|
| [2453] | 1487 | } | 
|---|
|  | 1488 |  | 
|---|
|  | 1489 | delete [] arr; | 
|---|
|  | 1490 | return Naxis[0]*Naxis[1]; | 
|---|
| [3188] | 1491 | } | 
|---|
| [2453] | 1492 |  | 
|---|
|  | 1493 | /*! Read image into a TMatrix<int_4> */ | 
|---|
| [3128] | 1494 | LONGLONG FitsImg2DRd::Read(TMatrix<int_4>& data) | 
|---|
| [2453] | 1495 | { | 
|---|
|  | 1496 | int sta=0; | 
|---|
|  | 1497 | int_4* arr = new int_4[Naxis[0]]; | 
|---|
|  | 1498 | data.ReSize(Naxis[1],Naxis[0]); | 
|---|
|  | 1499 | int T = (sizeof(long)==4) ? TLONG: TINT; | 
|---|
|  | 1500 |  | 
|---|
| [3128] | 1501 | for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1502 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0]; | 
|---|
| [3114] | 1503 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
| [2453] | 1504 | if(sta) { | 
|---|
|  | 1505 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1506 | throw | 
|---|
|  | 1507 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_4>): Error Reading Fits file\n"); | 
|---|
|  | 1508 | } | 
|---|
| [3128] | 1509 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i]; | 
|---|
| [2453] | 1510 | } | 
|---|
|  | 1511 |  | 
|---|
|  | 1512 | delete [] arr; | 
|---|
|  | 1513 | return Naxis[0]*Naxis[1]; | 
|---|
| [3188] | 1514 | } | 
|---|
| [2453] | 1515 |  | 
|---|
|  | 1516 | /*! Read image into a TMatrix<int_8> */ | 
|---|
| [3128] | 1517 | LONGLONG FitsImg2DRd::Read(TMatrix<int_8>& data) | 
|---|
| [2453] | 1518 | { | 
|---|
|  | 1519 | int sta=0; | 
|---|
|  | 1520 | int_8* arr = new int_8[Naxis[0]]; | 
|---|
|  | 1521 | data.ReSize(Naxis[1],Naxis[0]); | 
|---|
|  | 1522 |  | 
|---|
| [3128] | 1523 | for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1524 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0]; | 
|---|
| [3114] | 1525 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
| [2453] | 1526 | if(sta) { | 
|---|
|  | 1527 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1528 | throw | 
|---|
|  | 1529 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_8>): Error Reading Fits file\n"); | 
|---|
|  | 1530 | } | 
|---|
| [3128] | 1531 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i]; | 
|---|
| [2453] | 1532 | } | 
|---|
|  | 1533 |  | 
|---|
|  | 1534 | delete [] arr; | 
|---|
|  | 1535 | return Naxis[0]*Naxis[1]; | 
|---|
| [3188] | 1536 | } | 
|---|
| [2453] | 1537 |  | 
|---|
|  | 1538 | /*! Read image into a TMatrix<float> */ | 
|---|
| [3128] | 1539 | LONGLONG FitsImg2DRd::Read(TMatrix<float>& data) | 
|---|
| [2453] | 1540 | { | 
|---|
|  | 1541 | int sta=0; | 
|---|
|  | 1542 | float* arr = new float[Naxis[0]]; | 
|---|
|  | 1543 | data.ReSize(Naxis[1],Naxis[0]); | 
|---|
|  | 1544 |  | 
|---|
| [3128] | 1545 | for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1546 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0]; | 
|---|
| [3114] | 1547 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
| [2453] | 1548 | if(sta) { | 
|---|
|  | 1549 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1550 | throw | 
|---|
|  | 1551 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<float>): Error Reading Fits file\n"); | 
|---|
|  | 1552 | } | 
|---|
| [3128] | 1553 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i]; | 
|---|
| [2453] | 1554 | } | 
|---|
|  | 1555 |  | 
|---|
|  | 1556 | delete [] arr; | 
|---|
|  | 1557 | return Naxis[0]*Naxis[1]; | 
|---|
| [3188] | 1558 | } | 
|---|
| [2453] | 1559 |  | 
|---|
|  | 1560 | /*! Read image into a TMatrix<double> */ | 
|---|
| [3128] | 1561 | LONGLONG FitsImg2DRd::Read(TMatrix<double>& data) | 
|---|
| [2453] | 1562 | { | 
|---|
|  | 1563 | int sta=0; | 
|---|
|  | 1564 | double* arr = new double[Naxis[0]]; | 
|---|
|  | 1565 | data.ReSize(Naxis[1],Naxis[0]); | 
|---|
|  | 1566 |  | 
|---|
| [3128] | 1567 | for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1568 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0]; | 
|---|
| [3114] | 1569 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
| [2453] | 1570 | if(sta) { | 
|---|
|  | 1571 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1572 | throw | 
|---|
|  | 1573 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<double>): Error Reading Fits file\n"); | 
|---|
|  | 1574 | } | 
|---|
| [3128] | 1575 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i]; | 
|---|
| [2453] | 1576 | } | 
|---|
|  | 1577 |  | 
|---|
|  | 1578 | delete [] arr; | 
|---|
|  | 1579 | return Naxis[0]*Naxis[1]; | 
|---|
| [3188] | 1580 | } | 
|---|
| [2791] | 1581 |  | 
|---|
| [3188] | 1582 | /*! Read image pixel numcol,numrow with numcol=[0,Naxis1[ and numrow=[0,Naxis2[ */ | 
|---|
|  | 1583 | double FitsImg2DRd::Read(LONGLONG numcol, LONGLONG numrow) | 
|---|
|  | 1584 | { | 
|---|
|  | 1585 | int sta=0; | 
|---|
|  | 1586 | if(numcol<0 || numrow<0 || numcol>=Naxis[0] || numrow>=Naxis[1]) | 
|---|
|  | 1587 | throw | 
|---|
|  | 1588 | NotAvailableOperation("FitsImg2DRd::Read(col,row): bad col/row number\n"); | 
|---|
|  | 1589 |  | 
|---|
|  | 1590 | LONGLONG deb = numrow*Naxis[0] + numcol + 1; | 
|---|
|  | 1591 | double val = 0.; | 
|---|
|  | 1592 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta); | 
|---|
|  | 1593 |  | 
|---|
|  | 1594 | if(sta) { | 
|---|
|  | 1595 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1596 | throw | 
|---|
|  | 1597 | NotAvailableOperation("FitsImg2DRd::Read(col,num): Error Reading Fits file\n"); | 
|---|
|  | 1598 | } | 
|---|
|  | 1599 |  | 
|---|
|  | 1600 | return val; | 
|---|
|  | 1601 | } | 
|---|
|  | 1602 |  | 
|---|
| [2791] | 1603 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1604 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1605 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1606 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1607 |  | 
|---|
|  | 1608 | //! Class for reading a 2D image from a FITS file | 
|---|
|  | 1609 |  | 
|---|
|  | 1610 | /*! | 
|---|
|  | 1611 | \class SOPHYA::FitsImg2DRead | 
|---|
|  | 1612 | \ingroup FitsIOServer | 
|---|
|  | 1613 | Class for reading a 2D image from a FITS file | 
|---|
|  | 1614 | */ | 
|---|
|  | 1615 |  | 
|---|
|  | 1616 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1617 | /*! | 
|---|
|  | 1618 | Constructor. | 
|---|
|  | 1619 | \param fname : name of the FITS file | 
|---|
|  | 1620 | \param ihdu : number of the HDU where the image is. | 
|---|
|  | 1621 | \param lp : debug level | 
|---|
|  | 1622 | \verbatim | 
|---|
|  | 1623 | - if ihdu<=0 first IMAGE hdu is taken | 
|---|
|  | 1624 | - if ihdu>nhdu ihdu is set to nhdu | 
|---|
|  | 1625 | \endverbatim | 
|---|
|  | 1626 | \warning ihdu = [1,nhdu] | 
|---|
|  | 1627 | */ | 
|---|
|  | 1628 | FitsImg2DRead::FitsImg2DRead(string fname,int ihdu,int lp) | 
|---|
|  | 1629 | : FitsImg2DRd(new FitsOpenFile(fname),ihdu,lp) | 
|---|
|  | 1630 | { | 
|---|
|  | 1631 | } | 
|---|
|  | 1632 |  | 
|---|
|  | 1633 | /*! Constructor. see below */ | 
|---|
|  | 1634 | FitsImg2DRead::FitsImg2DRead(const char * cfname,int ihdu,int lp) | 
|---|
|  | 1635 | : FitsImg2DRd(new FitsOpenFile(cfname),ihdu,lp) | 
|---|
|  | 1636 | { | 
|---|
|  | 1637 | } | 
|---|
|  | 1638 |  | 
|---|
|  | 1639 | /*! Constructor by default */ | 
|---|
|  | 1640 | FitsImg2DRead::FitsImg2DRead() | 
|---|
|  | 1641 | : FitsImg2DRd() | 
|---|
|  | 1642 | { | 
|---|
|  | 1643 | } | 
|---|
|  | 1644 |  | 
|---|
|  | 1645 | /*! Constructor by copy */ | 
|---|
|  | 1646 | FitsImg2DRead::FitsImg2DRead(FitsImg2DRead& fimg) | 
|---|
|  | 1647 | { | 
|---|
|  | 1648 | // --- ATTENTION --- | 
|---|
|  | 1649 | // FitsImg2DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile | 
|---|
|  | 1650 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile()); | 
|---|
|  | 1651 | Init(fof,fimg.HDU(),fimg.DbgLevel); | 
|---|
|  | 1652 | } | 
|---|
|  | 1653 |  | 
|---|
|  | 1654 | /*! Destructor. */ | 
|---|
|  | 1655 | FitsImg2DRead::~FitsImg2DRead() | 
|---|
|  | 1656 | { | 
|---|
|  | 1657 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS | 
|---|
|  | 1658 | if(FitsOF!=NULL) delete FitsOF; | 
|---|
|  | 1659 | } | 
|---|
| [3114] | 1660 |  | 
|---|
|  | 1661 |  | 
|---|
|  | 1662 |  | 
|---|
|  | 1663 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1664 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1665 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1666 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 1667 |  | 
|---|
|  | 1668 | //! Class for reading a 3D image from a FITS file | 
|---|
|  | 1669 |  | 
|---|
|  | 1670 | /*! | 
|---|
|  | 1671 | \class SOPHYA::FitsImg3DRd | 
|---|
|  | 1672 | \ingroup FitsIOServer | 
|---|
|  | 1673 | Class for reading a 3D image from a FITS file | 
|---|
|  | 1674 | */ | 
|---|
|  | 1675 |  | 
|---|
|  | 1676 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1677 | /*! | 
|---|
|  | 1678 | Constructor. | 
|---|
|  | 1679 | \param fof : Pointer to the Class for opening the FITS file | 
|---|
|  | 1680 | \param ihdu : number of the HDU where the 3D image is. | 
|---|
|  | 1681 | \param lp : debug level | 
|---|
|  | 1682 | \verbatim | 
|---|
|  | 1683 | - if ihdu<=0 first IMAGE hdu is taken | 
|---|
|  | 1684 | - if ihdu>nhdu ihdu is set to nhdu | 
|---|
|  | 1685 | \endverbatim | 
|---|
|  | 1686 | \warning ihdu = [1,nhdu] | 
|---|
|  | 1687 | */ | 
|---|
|  | 1688 | FitsImg3DRd::FitsImg3DRd(FitsOpenFile* fof,int ihdu,int lp) | 
|---|
|  | 1689 | { | 
|---|
|  | 1690 | Init(fof,ihdu,lp); | 
|---|
|  | 1691 | } | 
|---|
|  | 1692 |  | 
|---|
|  | 1693 | /*! Constructor by copy */ | 
|---|
|  | 1694 | FitsImg3DRd::FitsImg3DRd(FitsImg3DRd& fbt) | 
|---|
|  | 1695 | { | 
|---|
|  | 1696 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel); | 
|---|
|  | 1697 | } | 
|---|
|  | 1698 |  | 
|---|
|  | 1699 | /*! Constructor by default */ | 
|---|
|  | 1700 | FitsImg3DRd::FitsImg3DRd() | 
|---|
|  | 1701 | { | 
|---|
|  | 1702 | Naxis[0] = Naxis[1] = Naxis[2] = 0; | 
|---|
|  | 1703 | SetNulVal(); SetDebug(0); | 
|---|
|  | 1704 | FitsOF = NULL; | 
|---|
|  | 1705 | } | 
|---|
|  | 1706 |  | 
|---|
|  | 1707 | /*! Init routine called by the constructor */ | 
|---|
|  | 1708 | void FitsImg3DRd::Init(FitsOpenFile* fof,int ihdu,int lp) | 
|---|
|  | 1709 | { | 
|---|
|  | 1710 | // Initialisation des Parametres Generaux | 
|---|
|  | 1711 | Naxis[0] = Naxis[1] = Naxis[2] = 0; | 
|---|
|  | 1712 | SetNulVal(); SetDebug(lp); | 
|---|
|  | 1713 | FitsOF = NULL; | 
|---|
|  | 1714 |  | 
|---|
|  | 1715 | // Caracteristiques du FitsOpenFile | 
|---|
|  | 1716 | FitsOF = fof; | 
|---|
|  | 1717 | if(FitsOF==NULL) | 
|---|
|  | 1718 | throw NullPtrError("FitsImg3DRd::Init: FitsOpenFile pointer is NULL\n"); | 
|---|
|  | 1719 |  | 
|---|
|  | 1720 | if(GetFitsPtr()==NULL) | 
|---|
|  | 1721 | throw NullPtrError("FitsImg3DRd::Init: FitsPtr pointer is NULL\n"); | 
|---|
|  | 1722 |  | 
|---|
|  | 1723 | int sta = 0; | 
|---|
|  | 1724 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU(); | 
|---|
|  | 1725 |  | 
|---|
|  | 1726 | // Get HDU 3D image | 
|---|
|  | 1727 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init() | 
|---|
|  | 1728 | if(FitsOF->GetPosStatus()==false) { | 
|---|
|  | 1729 | if(ihdu==0) { // find the first IMAGE_HDU | 
|---|
|  | 1730 | FitsOF->MoveToFirst(IMAGE_HDU); | 
|---|
|  | 1731 | } else { | 
|---|
|  | 1732 | int rc = FitsOF->MoveToHDU(ihdu); | 
|---|
|  | 1733 | if(rc!=ihdu) | 
|---|
|  | 1734 | throw RangeCheckError("FitsImg3DRd::Init: Error moving to requested HDU\n"); | 
|---|
|  | 1735 | } | 
|---|
|  | 1736 | } else { // Fits file has already been positionned | 
|---|
|  | 1737 | if(ihdu>0 && ihdu!=HDU()) | 
|---|
|  | 1738 | throw RangeCheckError("FitsImg3DRd::Init: file already posit. at another HDU\n"); | 
|---|
|  | 1739 | } | 
|---|
|  | 1740 |  | 
|---|
|  | 1741 | // Check HDUType and set position status to TRUE | 
|---|
|  | 1742 | if(HDUType()!=IMAGE_HDU) | 
|---|
|  | 1743 | throw TypeMismatchExc("FitsImg3DRd::Init: HDU not IMAGE_HDU\n"); | 
|---|
|  | 1744 | FitsOF->SetPosStatus(true); | 
|---|
|  | 1745 |  | 
|---|
|  | 1746 | // Get NAXIS 1, 2 et 3 | 
|---|
|  | 1747 | int nfound=0; | 
|---|
| [3128] | 1748 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h | 
|---|
|  | 1749 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,3,Naxis,&nfound,&sta)) { | 
|---|
| [3114] | 1750 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1751 | throw RangeCheckError("FitsImg3DRd::Init: Error reading NAXIS cards\n"); | 
|---|
|  | 1752 | } | 
|---|
|  | 1753 | if(DbgLevel>1) | 
|---|
|  | 1754 | cout<<"...Init(hdu="<<HDU()<<")  NAXIS1="<<Naxis[0]<<" NAXIS2=" | 
|---|
|  | 1755 | <<Naxis[1]<<" NAXIS3="<<Naxis[2]<<" (nfound="<<nfound<<")"<<endl; | 
|---|
|  | 1756 | if(nfound!=3 || Naxis[0]<=0 || Naxis[1]<=0 || Naxis[2]<=0) | 
|---|
|  | 1757 | throw NotAvailableOperation("FitsImg3DRd::Init: bad Naxis[0-2] value\n"); | 
|---|
|  | 1758 |  | 
|---|
|  | 1759 | } | 
|---|
|  | 1760 |  | 
|---|
|  | 1761 | /*! Destructor. */ | 
|---|
|  | 1762 | FitsImg3DRd::~FitsImg3DRd() | 
|---|
|  | 1763 | { | 
|---|
|  | 1764 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!! | 
|---|
|  | 1765 | Naxis[0] = Naxis[1] = Naxis[2] = 0; | 
|---|
|  | 1766 | } | 
|---|
|  | 1767 |  | 
|---|
|  | 1768 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1769 | /*! | 
|---|
|  | 1770 | Read a fitsheader key into double | 
|---|
|  | 1771 | \param keyname : name of the key | 
|---|
|  | 1772 | \return value into double | 
|---|
|  | 1773 | */ | 
|---|
| [3572] | 1774 | double FitsImg3DRd::ReadKey(const char *keyname) | 
|---|
| [3114] | 1775 | { | 
|---|
|  | 1776 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname); | 
|---|
|  | 1777 | } | 
|---|
|  | 1778 |  | 
|---|
|  | 1779 | /*! | 
|---|
|  | 1780 | Read a fitsheader key into long | 
|---|
|  | 1781 | \param keyname : name of the key | 
|---|
|  | 1782 | \return value into long | 
|---|
|  | 1783 | */ | 
|---|
| [3572] | 1784 | long FitsImg3DRd::ReadKeyL(const char *keyname) | 
|---|
| [3114] | 1785 | { | 
|---|
|  | 1786 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname); | 
|---|
|  | 1787 | } | 
|---|
|  | 1788 |  | 
|---|
|  | 1789 | /*! | 
|---|
| [3128] | 1790 | Read a fitsheader key into long long | 
|---|
|  | 1791 | \param keyname : name of the key | 
|---|
|  | 1792 | \return value into long long | 
|---|
|  | 1793 | */ | 
|---|
| [3572] | 1794 | LONGLONG FitsImg3DRd::ReadKeyLL(const char *keyname) | 
|---|
| [3128] | 1795 | { | 
|---|
|  | 1796 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname); | 
|---|
|  | 1797 | } | 
|---|
|  | 1798 |  | 
|---|
|  | 1799 | /*! | 
|---|
| [3114] | 1800 | Read a fitsheader key into string | 
|---|
|  | 1801 | \param keyname : name of the key | 
|---|
|  | 1802 | \return value into string | 
|---|
|  | 1803 | */ | 
|---|
| [3572] | 1804 | string FitsImg3DRd::ReadKeyS(const char *keyname) | 
|---|
| [3114] | 1805 | { | 
|---|
|  | 1806 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname); | 
|---|
|  | 1807 | } | 
|---|
|  | 1808 |  | 
|---|
|  | 1809 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 1810 | /* REMARQUE: | 
|---|
|  | 1811 | * Dans TArray A(naxis1,naxis2,naxis3); | 
|---|
|  | 1812 | *      A(i,j,k) -> i varie le plus vite et k le moins vite | 
|---|
|  | 1813 | */ | 
|---|
|  | 1814 | /*! | 
|---|
|  | 1815 | Read 3D image into a TArray<uint_2> | 
|---|
|  | 1816 | */ | 
|---|
| [3128] | 1817 | LONGLONG FitsImg3DRd::Read(TArray<uint_2>& data) | 
|---|
| [3114] | 1818 | { | 
|---|
|  | 1819 | int sta=0; | 
|---|
|  | 1820 | uint_2* arr = new uint_2[Naxis[0]]; | 
|---|
|  | 1821 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim); | 
|---|
|  | 1822 |  | 
|---|
| [3128] | 1823 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1824 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
| [3114] | 1825 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
|  | 1826 | if(sta) { | 
|---|
|  | 1827 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1828 | throw | 
|---|
|  | 1829 | NotAvailableOperation("FitsImg3DRd::Read(TArray<uint_2>): Error Reading Fits file\n"); | 
|---|
|  | 1830 | } | 
|---|
| [3128] | 1831 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i]; | 
|---|
| [3114] | 1832 | } | 
|---|
|  | 1833 |  | 
|---|
|  | 1834 | delete [] arr; | 
|---|
|  | 1835 | return Naxis[0]*Naxis[1]*Naxis[2]; | 
|---|
| [3188] | 1836 | } | 
|---|
| [3114] | 1837 |  | 
|---|
|  | 1838 | /*! Read 3D image into a TArray<int_4> */ | 
|---|
| [3128] | 1839 | LONGLONG FitsImg3DRd::Read(TArray<int_4>& data) | 
|---|
| [3114] | 1840 | { | 
|---|
|  | 1841 | int sta=0; | 
|---|
|  | 1842 | int_4* arr = new int_4[Naxis[0]]; | 
|---|
|  | 1843 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim); | 
|---|
|  | 1844 | int T = (sizeof(long)==4) ? TLONG: TINT; | 
|---|
|  | 1845 |  | 
|---|
| [3128] | 1846 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1847 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
| [3114] | 1848 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
|  | 1849 | if(sta) { | 
|---|
|  | 1850 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1851 | throw | 
|---|
|  | 1852 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_4>): Error Reading Fits file\n"); | 
|---|
|  | 1853 | } | 
|---|
| [3128] | 1854 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i]; | 
|---|
| [3114] | 1855 | } | 
|---|
|  | 1856 |  | 
|---|
|  | 1857 | delete [] arr; | 
|---|
|  | 1858 | return Naxis[0]*Naxis[1]*Naxis[2]; | 
|---|
| [3188] | 1859 | } | 
|---|
| [3114] | 1860 |  | 
|---|
|  | 1861 | /*! Read 3D image into a TArray<int_8> */ | 
|---|
| [3128] | 1862 | LONGLONG FitsImg3DRd::Read(TArray<int_8>& data) | 
|---|
| [3114] | 1863 | { | 
|---|
|  | 1864 | int sta=0; | 
|---|
|  | 1865 | int_8* arr = new int_8[Naxis[0]]; | 
|---|
|  | 1866 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim); | 
|---|
|  | 1867 |  | 
|---|
| [3128] | 1868 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1869 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
| [3114] | 1870 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
|  | 1871 | if(sta) { | 
|---|
|  | 1872 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1873 | throw | 
|---|
|  | 1874 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_8>): Error Reading Fits file\n"); | 
|---|
|  | 1875 | } | 
|---|
| [3128] | 1876 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i]; | 
|---|
| [3114] | 1877 | } | 
|---|
|  | 1878 |  | 
|---|
|  | 1879 | delete [] arr; | 
|---|
|  | 1880 | return Naxis[0]*Naxis[1]*Naxis[2]; | 
|---|
| [3188] | 1881 | } | 
|---|
| [3114] | 1882 |  | 
|---|
|  | 1883 | /*! Read 3D image into a TArray<float> */ | 
|---|
| [3128] | 1884 | LONGLONG FitsImg3DRd::Read(TArray<float>& data) | 
|---|
| [3114] | 1885 | { | 
|---|
|  | 1886 | int sta=0; | 
|---|
|  | 1887 | float* arr = new float[Naxis[0]]; | 
|---|
|  | 1888 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim); | 
|---|
|  | 1889 |  | 
|---|
| [3128] | 1890 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1891 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
| [3114] | 1892 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
|  | 1893 | if(sta) { | 
|---|
|  | 1894 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1895 | throw | 
|---|
|  | 1896 | NotAvailableOperation("FitsImg3DRd::Read(TArray<float>): Error Reading Fits file\n"); | 
|---|
|  | 1897 | } | 
|---|
| [3128] | 1898 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i]; | 
|---|
| [3114] | 1899 | } | 
|---|
|  | 1900 |  | 
|---|
|  | 1901 | delete [] arr; | 
|---|
|  | 1902 | return Naxis[0]*Naxis[1]*Naxis[2]; | 
|---|
| [3188] | 1903 | } | 
|---|
| [3114] | 1904 |  | 
|---|
|  | 1905 | /*! Read 3D image into a TArray<double> */ | 
|---|
| [3128] | 1906 | LONGLONG FitsImg3DRd::Read(TArray<double>& data) | 
|---|
| [3114] | 1907 | { | 
|---|
|  | 1908 | int sta=0; | 
|---|
|  | 1909 | double* arr = new double[Naxis[0]]; | 
|---|
|  | 1910 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim); | 
|---|
|  | 1911 |  | 
|---|
| [3128] | 1912 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) { | 
|---|
|  | 1913 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
| [3114] | 1914 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta); | 
|---|
|  | 1915 | if(sta) { | 
|---|
|  | 1916 | FitsOpenFile::printerror(sta); delete [] arr; | 
|---|
|  | 1917 | throw | 
|---|
|  | 1918 | NotAvailableOperation("FitsImg3DRd::Read(TArray<double>): Error Reading Fits file\n"); | 
|---|
|  | 1919 | } | 
|---|
| [3128] | 1920 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i]; | 
|---|
| [3114] | 1921 | } | 
|---|
|  | 1922 |  | 
|---|
|  | 1923 | delete [] arr; | 
|---|
|  | 1924 | return Naxis[0]*Naxis[1]*Naxis[2]; | 
|---|
| [3188] | 1925 | } | 
|---|
| [3114] | 1926 |  | 
|---|
| [3772] | 1927 | /*! Read 3D image into a TVector<int_4> */ | 
|---|
|  | 1928 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<int_4>& data) | 
|---|
|  | 1929 | { | 
|---|
|  | 1930 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2]) | 
|---|
|  | 1931 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<int_4>): bad j/k number\n"); | 
|---|
|  | 1932 | int sta=0; | 
|---|
|  | 1933 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]); | 
|---|
|  | 1934 | int T = (sizeof(long)==4) ? TLONG: TINT; | 
|---|
|  | 1935 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
|  | 1936 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,data.Data(),NULL,&sta); | 
|---|
|  | 1937 | if(sta) { | 
|---|
|  | 1938 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1939 | throw | 
|---|
|  | 1940 | NotAvailableOperation("FitsImg3DRd::Read(TVector<int_4>): Error Reading Fits file\n"); | 
|---|
|  | 1941 | } | 
|---|
|  | 1942 | return Naxis[0]; | 
|---|
|  | 1943 | } | 
|---|
|  | 1944 |  | 
|---|
|  | 1945 | /*! Read 3D image into a TVector<float> */ | 
|---|
|  | 1946 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<float>& data) | 
|---|
|  | 1947 | { | 
|---|
|  | 1948 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2]) | 
|---|
|  | 1949 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<float>): bad j/k number\n"); | 
|---|
|  | 1950 | int sta=0; | 
|---|
|  | 1951 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]); | 
|---|
|  | 1952 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
|  | 1953 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,data.Data(),NULL,&sta); | 
|---|
|  | 1954 | if(sta) { | 
|---|
|  | 1955 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1956 | throw | 
|---|
|  | 1957 | NotAvailableOperation("FitsImg3DRd::Read(TVector<float>): Error Reading Fits file\n"); | 
|---|
|  | 1958 | } | 
|---|
|  | 1959 | return Naxis[0]; | 
|---|
|  | 1960 | } | 
|---|
|  | 1961 |  | 
|---|
|  | 1962 | /*! Read 3D image into a TVector<double> */ | 
|---|
|  | 1963 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<double>& data) | 
|---|
|  | 1964 | { | 
|---|
|  | 1965 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2]) | 
|---|
|  | 1966 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<double>): bad j/k number\n"); | 
|---|
|  | 1967 | int sta=0; | 
|---|
|  | 1968 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]); | 
|---|
|  | 1969 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; | 
|---|
|  | 1970 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,data.Data(),NULL,&sta); | 
|---|
|  | 1971 | if(sta) { | 
|---|
|  | 1972 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1973 | throw | 
|---|
|  | 1974 | NotAvailableOperation("FitsImg3DRd::Read(TVector<double>): Error Reading Fits file\n"); | 
|---|
|  | 1975 | } | 
|---|
|  | 1976 | return Naxis[0]; | 
|---|
|  | 1977 | } | 
|---|
|  | 1978 |  | 
|---|
| [3188] | 1979 | /*! Read 3D image pixel i,j,k with i=[0,Naxis1[ , j=[0,Naxis2[ , k=[0,Naxis3[ */ | 
|---|
|  | 1980 | double FitsImg3DRd::Read(LONGLONG i, LONGLONG j, LONGLONG k) | 
|---|
|  | 1981 | { | 
|---|
|  | 1982 | int sta=0; | 
|---|
|  | 1983 | if(i<0 || j<0 || k<0 || i>=Naxis[0] || j>=Naxis[1] || k>=Naxis[2]) | 
|---|
|  | 1984 | throw | 
|---|
|  | 1985 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): bad i/j/k number\n"); | 
|---|
|  | 1986 |  | 
|---|
|  | 1987 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+i+1; | 
|---|
|  | 1988 | double val = 0.; | 
|---|
|  | 1989 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta); | 
|---|
|  | 1990 |  | 
|---|
|  | 1991 | if(sta) { | 
|---|
|  | 1992 | FitsOpenFile::printerror(sta); | 
|---|
|  | 1993 | throw | 
|---|
|  | 1994 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): Error Reading Fits file\n"); | 
|---|
|  | 1995 | } | 
|---|
|  | 1996 |  | 
|---|
|  | 1997 | return val; | 
|---|
|  | 1998 | } | 
|---|
|  | 1999 |  | 
|---|
| [3114] | 2000 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 2001 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 2002 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 2003 | /////////////////////////////////////////////////////////////////// | 
|---|
|  | 2004 |  | 
|---|
|  | 2005 | //! Class for reading a 3D image from a FITS file | 
|---|
|  | 2006 |  | 
|---|
|  | 2007 | /*! | 
|---|
|  | 2008 | \class SOPHYA::FitsImg3DRead | 
|---|
|  | 2009 | \ingroup FitsIOServer | 
|---|
|  | 2010 | Class for reading a 3D image from a FITS file | 
|---|
|  | 2011 | */ | 
|---|
|  | 2012 |  | 
|---|
|  | 2013 | ////////////////////////////////////////////////////////////// | 
|---|
|  | 2014 | /*! | 
|---|
|  | 2015 | Constructor. | 
|---|
|  | 2016 | \param fname : name of the FITS file | 
|---|
|  | 2017 | \param ihdu : number of the HDU where the 3D image is. | 
|---|
|  | 2018 | \param lp : debug level | 
|---|
|  | 2019 | \verbatim | 
|---|
|  | 2020 | - if ihdu<=0 first IMAGE hdu is taken | 
|---|
|  | 2021 | - if ihdu>nhdu ihdu is set to nhdu | 
|---|
|  | 2022 | \endverbatim | 
|---|
|  | 2023 | \warning ihdu = [1,nhdu] | 
|---|
|  | 2024 | */ | 
|---|
|  | 2025 | FitsImg3DRead::FitsImg3DRead(string fname,int ihdu,int lp) | 
|---|
|  | 2026 | : FitsImg3DRd(new FitsOpenFile(fname),ihdu,lp) | 
|---|
|  | 2027 | { | 
|---|
|  | 2028 | } | 
|---|
|  | 2029 |  | 
|---|
|  | 2030 | /*! Constructor. see below */ | 
|---|
|  | 2031 | FitsImg3DRead::FitsImg3DRead(const char * cfname,int ihdu,int lp) | 
|---|
|  | 2032 | : FitsImg3DRd(new FitsOpenFile(cfname),ihdu,lp) | 
|---|
|  | 2033 | { | 
|---|
|  | 2034 | } | 
|---|
|  | 2035 |  | 
|---|
|  | 2036 | /*! Constructor by default */ | 
|---|
|  | 2037 | FitsImg3DRead::FitsImg3DRead() | 
|---|
|  | 2038 | : FitsImg3DRd() | 
|---|
|  | 2039 | { | 
|---|
|  | 2040 | } | 
|---|
|  | 2041 |  | 
|---|
|  | 2042 | /*! Constructor by copy */ | 
|---|
|  | 2043 | FitsImg3DRead::FitsImg3DRead(FitsImg3DRead& fimg) | 
|---|
|  | 2044 | { | 
|---|
|  | 2045 | // --- ATTENTION --- | 
|---|
|  | 2046 | // FitsImg3DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile | 
|---|
|  | 2047 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile()); | 
|---|
|  | 2048 | Init(fof,fimg.HDU(),fimg.DbgLevel); | 
|---|
|  | 2049 | } | 
|---|
|  | 2050 |  | 
|---|
|  | 2051 | /*! Destructor. */ | 
|---|
|  | 2052 | FitsImg3DRead::~FitsImg3DRead() | 
|---|
|  | 2053 | { | 
|---|
|  | 2054 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS | 
|---|
|  | 2055 | if(FitsOF!=NULL) delete FitsOF; | 
|---|
|  | 2056 | } | 
|---|