1 | /* Lecteur de colonne de table Fits (binaire ou ASCII) avec buffer */
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2 | #include "sopnamsp.h"
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3 | #include "machdefs.h"
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4 | #include <stdlib.h>
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5 | #include <stdio.h>
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6 | #include "pexceptions.h"
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7 | #include "fabtcolread.h"
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8 |
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9 | ///////////////////////////////////////////////////////////////////
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10 | ///////////////////////////////////////////////////////////////////
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11 | ///////////////////////////////////////////////////////////////////
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12 | ///////////////////////////////////////////////////////////////////
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13 |
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14 | //! Class for opening a FITS file for reading
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15 |
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16 | /*!
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17 | \class SOPHYA::FitsOpenFile
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18 | \ingroup FitsIOServer
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19 | Class for opening a FITS file for reading
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20 | */
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21 |
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22 | /*!
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23 | Constructor.
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24 | \param fname : FITS file name to be opened for reading
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25 | */
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26 | FitsOpenFile::FitsOpenFile(string fname)
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27 | {
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28 | Init(fname.c_str());
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29 | }
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30 |
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31 | /*!
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32 | Constructor.
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33 | \param cfname : FITS file name to be opened for reading
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34 | */
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35 | FitsOpenFile::FitsOpenFile(const char *cfname)
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36 | {
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37 | Init(cfname);
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38 | }
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39 |
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40 | /*!
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41 | Constructor by default.
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42 | */
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43 | FitsOpenFile::FitsOpenFile()
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44 | {
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45 | FitsFN = "";
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46 | NHdu = IHdu = HduType = 0;
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47 | HasBeenPos = false;
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48 | FitsPtr = NULL;
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49 | }
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50 |
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51 | /*!
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52 | Constructor by copy.
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53 | */
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54 | FitsOpenFile::FitsOpenFile(FitsOpenFile& fof)
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55 | {
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56 | Init(fof.FileName().c_str());
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57 | }
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58 |
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59 | /*!
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60 | Destructor.
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61 | */
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62 | FitsOpenFile::~FitsOpenFile()
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63 | {
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64 | Delete();
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65 | FitsFN = "";
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66 | NHdu = IHdu = HduType = 0;
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67 | HasBeenPos = false;
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68 | }
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69 |
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70 | /*!
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71 | Delete routine called by the destructor.
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72 | */
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73 | void FitsOpenFile::Delete(void)
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74 | {
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75 | if(FitsPtr != NULL) {
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76 | int sta = 0;
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77 | if(fits_close_file(FitsPtr,&sta)) printerror(sta);
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78 | FitsPtr = NULL;
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79 | }
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80 | }
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81 |
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82 | /*! Init routine called by the constructor */
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83 | void FitsOpenFile::Init(const char* fname)
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84 | {
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85 | // Parametres Generaux
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86 | FitsFN = fname;
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87 | NHdu = IHdu = HduType = 0;
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88 | HasBeenPos = false;
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89 | FitsPtr = NULL;
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90 |
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91 | // Ouverture du fichier
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92 | if(FitsFN.size() <= 0 )
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93 | throw ParmError("FitsOpenFile::Init: Fits file name error\n");
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94 |
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95 | int sta = 0;
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96 | if(fits_open_file(&FitsPtr,FitsFN.c_str(),READONLY,&sta)) {
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97 | printerror(sta);
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98 | FitsPtr = NULL;
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99 | throw NullPtrError("FitsOpenFile::Init: Error opening Fits file\n");
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100 | }
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101 |
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102 | // Get number of hdu
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103 | if(fits_get_num_hdus(FitsPtr,&NHdu,&sta)) {
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104 | printerror(sta);
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105 | NHdu = 0;
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106 | Delete();
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107 | throw NotAvailableOperation("FitsOpenFile::Init: Error getting NHdu\n");
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108 | }
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109 | if(NHdu<=0) {
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110 | Delete();
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111 | throw SzMismatchError("FitsOpenFile::Init: Bad NHdu\n");
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112 | }
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113 |
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114 | MoveToHDU(1);
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115 | }
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116 |
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117 | /*! Move to an HDU
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118 | \param ihdu: hdu number to move
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119 | \warning ihdu = [1,nhdu]
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120 | \return 0 if positionning failed, ihdu if success
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121 | */
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122 | int FitsOpenFile::MoveToHDU(int ihdu)
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123 | {
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124 | if(FitsPtr==NULL)
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125 | throw NullPtrError("FitsOpenFile::MoveToHDU: no fits file open FitsPtr==NULL\n");
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126 | int ihdusave = IHdu;
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127 | if(ihdu<=0) ihdu=1; if(ihdu>NHdu) ihdu=NHdu;
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128 | int sta=0;
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129 | if(fits_movabs_hdu(FitsPtr,ihdu,&HduType,&sta)) {
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130 | printerror(sta);
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131 | // On se repositionne ou on etait
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132 | fits_movabs_hdu(FitsPtr,ihdusave,&HduType,&sta);
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133 | IHdu = ihdusave;
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134 | } else IHdu = ihdu;
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135 | return IHdu;
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136 | }
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137 |
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138 | /*! Move to the first HDU of a certain type
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139 | \param hdutype: type of the hdu
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140 | \param hdudeb: start at that hdu
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141 | \return the type of HDU the file is positionned
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142 | */
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143 | int FitsOpenFile::MoveToFirst(int hdutype,int ihdudeb)
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144 | {
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145 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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146 | int ihdusave = IHdu;
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147 | for(int ihdu=ihdudeb;ihdu<=NHdu;ihdu++) {
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148 | MoveToHDU(ihdu);
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149 | if(HduType==hdutype) break;
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150 | }
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151 | // Si echec, on se repositionne ou on etait
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152 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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153 | return HduType;
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154 | }
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155 |
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156 | /*! Move to the last HDU of a certain type
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157 | \param hdutype: type of the hdu
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158 | \param hdudeb: stop at that hdu
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159 | \return the type of HDU the file is positionned
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160 | */
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161 | int FitsOpenFile::MoveToLast(int hdutype,int ihdudeb)
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162 | {
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163 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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164 | int ihdusave = IHdu;
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165 | for(int ihdu=NHdu;ihdu>=ihdudeb;ihdu--) {
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166 | MoveToHDU(ihdu);
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167 | if(HduType==hdutype) break;
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168 | }
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169 | // Si echec, on se repositionne ou on etait
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170 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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171 | return HduType;
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172 | }
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173 |
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174 | /*! Print */
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175 | void FitsOpenFile::Print(void)
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176 | {
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177 | cout<<"FitsOpenFile::Print: "<<FitsFN
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178 | <<" hdu="<<IHdu<<"/"<<NHdu<<" type="<<HduType
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179 | <<" hasbeenpos="<<HasBeenPos<<endl;
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180 | }
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181 |
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182 | //////////////////////////////////////////////////////////////
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183 | //// Methodes statiques
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184 | //////////////////////////////////////////////////////////////
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185 | /*!
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186 | Read a fitsheader key into double
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187 | \param fitsptr : cfitio pointer to Fits file
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188 | \param keyname : name of the key
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189 | \return value into double
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190 | */
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191 | double FitsOpenFile::ReadKey(fitsfile *fitsptr,const char *keyname)
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192 | {
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193 | if(keyname==NULL || fitsptr==NULL) return 0.;
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194 | int sta=0; double val=0.;
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195 | if(fits_read_key(fitsptr,TDOUBLE,keyname,&val,NULL,&sta))
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196 | printerror(sta);
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197 | return val;
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198 | }
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199 |
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200 | /*!
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201 | Read a fitsheader key into long
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202 | \param fitsptr : cfitio pointer to Fits file
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203 | \param keyname : name of the key
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204 | \return value into long
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205 | */
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206 | long FitsOpenFile::ReadKeyL(fitsfile *fitsptr,const char *keyname)
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207 | {
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208 | if(keyname==NULL || fitsptr==NULL) return 0;
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209 | int sta=0; long val=0;
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210 | if(fits_read_key(fitsptr,TLONG,keyname,&val,NULL,&sta))
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211 | printerror(sta);
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212 | return val;
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213 | }
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214 |
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215 | /*!
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216 | Read a fitsheader key into long
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217 | \param fitsptr : cfitio pointer to Fits file
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218 | \param keyname : name of the key
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219 | \return value into long long
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220 | */
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221 | LONGLONG FitsOpenFile::ReadKeyLL(fitsfile *fitsptr,const char *keyname)
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222 | {
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223 | if(keyname==NULL || fitsptr==NULL) return 0;
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224 | int sta=0; LONGLONG val=0;
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225 | if(fits_read_key(fitsptr,TLONGLONG,keyname,&val,NULL,&sta))
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226 | printerror(sta);
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227 | return val;
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228 | }
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229 |
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230 | /*!
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231 | Read a fitsheader key into string
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232 | \param fitsptr : cfitio pointer to Fits file
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233 | \param keyname : name of the key
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234 | \return value into string
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235 | */
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236 | string FitsOpenFile::ReadKeyS(fitsfile *fitsptr,const char *keyname)
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237 | {
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238 | if(keyname==NULL || fitsptr==NULL) return (string)"";
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239 | int sta=0; char val[FLEN_VALUE];
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240 | if(fits_read_key(fitsptr,TSTRING,keyname,val,NULL,&sta))
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241 | printerror(sta);
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242 | string sval = val;
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243 | return sval;
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244 | }
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245 |
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246 | /*!
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247 | CFitsIO error printing routine
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248 | \param sta : cfitio error return code
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249 | */
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250 | void FitsOpenFile::printerror(int sta)
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251 | {
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252 | int stat = sta;
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253 | fits_report_error(stdout,stat);
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254 | fflush(stdout);
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255 | return;
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256 | }
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257 |
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258 | ///////////////////////////////////////////////////////////////////
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259 | ///////////////////////////////////////////////////////////////////
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260 | ///////////////////////////////////////////////////////////////////
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261 | ///////////////////////////////////////////////////////////////////
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262 |
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263 | ///////////////////////////////////////////////////////////////////
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264 | //! Class for reading a column in a FITS ASCII or BINARY table
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265 |
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266 | /*!
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267 | \class SOPHYA::FitsABTColRd
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268 | \ingroup FitsIOServer
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269 | Class for reading a column in a FITS ASCII or BINARY table.
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270 | You can read many columns of the same FITS table by instanciating
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271 | many FitsABTColRd on the same FitsOpenFile. So, the FITS file is
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272 | opened only once. Of course the various FitsABTColRd must read
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273 | the same FITS file HDU.
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274 | \verbatim
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275 | -- Exemple:
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276 | // Open the fits file with FitsOpenFile
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277 | FitsOpenFile fof = new FitsOpenFile("myfits.fits");
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278 | // Select the column to be read
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279 | FitsABTColRd fbt(fof,"BoloMuv_28",0,1000,1,3);
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280 | FitsABTColRd fbt2(fof,"BoloMuv_29",0,1000,1,3);
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281 | fbt.SetDebug(3);
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282 | fbt.Print(3);
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283 | // Read element by element
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284 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) {
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285 | double x = fbt.Read(i);
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286 | double y = fbt2.Read(i);
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287 | if(i%lpmod==0) cout<<i<<": "<<x<<", "<<y<<endl;
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288 | }
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289 | // Read into a vector
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290 | TVector<double> data;
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291 | LONGLONG n = fbt.Read(32,50,data);
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292 | cout<<"Number of values read: "<<n<<endl;
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293 | data.ReSize(100);
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294 | n = fbt.Read(10,-1,data);
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295 | cout<<"Number of values read: "<<n<<endl;
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296 | TVector<double> data2;
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297 | fbt2.Read(32,50,data);
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298 | // Close the fits file
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299 | delete fof;
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300 | \endverbatim
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301 | */
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302 |
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303 | //////////////////////////////////////////////////////////////
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304 | /*!
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305 | Constructor.
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306 | \param fof : Pointer to the Class for opening the FITS file
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307 | \param collabel : label of the column to be read
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308 | \param ihdu : number of the HDU where the column is.
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309 | \param blen : read buffer length
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310 | \param bsens : buffer reading direction
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311 | \param lp : debug level
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312 | \verbatim
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313 | - if ihdu<=0 first BINARY or ASCII table is taken
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314 | - if ihdu>nhdu ihdu is set to nhdu
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315 | - bsens>0 read forward
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316 | bsens<0 read backward
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317 | bsens==0 read centered
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318 | \endverbatim
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319 | \warning ihdu = [1,nhdu]
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320 | */
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321 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,string collabel
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322 | ,int ihdu,long blen,long bsens,int lp)
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323 | {
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324 | Init(fof,collabel.c_str(),-1,ihdu,blen,bsens,lp);
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325 | }
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326 |
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327 | /*!
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328 | Constructor.
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329 | Same as before but the column is identified by its column number
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330 | \param colnum : number of the column to be read
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331 | \warning col = [0,ncol[
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332 | */
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333 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,int colnum
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334 | ,int ihdu,long blen,long bsens,int lp)
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335 | {
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336 | Init(fof,"",colnum,ihdu,blen,bsens,lp);
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337 | }
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338 |
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339 | /*! Constructor by copy */
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340 | FitsABTColRd::FitsABTColRd(FitsABTColRd& fbt)
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341 | {
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342 | Init(fbt.GetFitsOpenFile(),fbt.GetColLabel().c_str()
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343 | ,fbt.GetColNum(),fbt.HDU()
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344 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
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345 | }
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346 |
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347 | /*! Constructor by default */
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348 | FitsABTColRd::FitsABTColRd()
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349 | {
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350 | ColLabel = ""; ColTUnit = ""; ColTForm = "";
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351 | ColNum = -1; ColTypeCode = 0;
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352 | NBcol = 0; NBline = 0;
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353 | SetNulVal(); SetDebug(0);
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354 | NFitsRead = 0;
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355 | FitsOF = NULL;
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356 | LineDeb = LineFin = -1;
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357 | Buffer = NULL;
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358 | }
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359 |
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360 | /*! Init routine called by the constructor */
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361 | void FitsABTColRd::Init(FitsOpenFile* fof,const char* collabel,int colnum
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362 | ,int ihdu,long blen,long bsens,int lp)
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363 | {
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364 | // Initialisation des Parametres Generaux
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365 | ColLabel=collabel; ColTUnit=""; ColTForm=""; ColNum=colnum; ColTypeCode=0;
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366 | NBcol = 0; NBline = 0;
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367 | SetNulVal(); SetDebug(lp);
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368 | NFitsRead = 0;
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369 | FitsOF = NULL;
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370 | LineDeb = LineFin = -1;
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371 | Buffer = NULL;
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372 |
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373 | // Caracteristiques du FitsOpenFile
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374 | FitsOF = fof;
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375 | if(FitsOF==NULL)
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376 | throw NullPtrError("FitsABTColRd::Init: FitsOpenFile pointer is NULL\n");
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377 |
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378 | if(GetFitsPtr()==NULL)
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379 | throw NullPtrError("FitsABTColRd::Init: FitsPtr pointer is NULL\n");
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380 |
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381 | int sta = 0;
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382 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
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383 |
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384 | // Get HDU for bin/ascii table
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385 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU,
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386 | // une classe utilisant ce fichier doit le positionner sur un HDU.
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387 | // Par contre, si une autre classe utilise ce meme FitsOpenFile,
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388 | // elle ne peut le positionner que sur ce meme HDU !
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389 | if(FitsOF->GetPosStatus()==false) {
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390 | if(ihdu==0) { // find the first BINARY then the first ASCII
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391 | int rc = FitsOF->MoveToFirst(BINARY_TBL);
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392 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL);
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393 | } else {
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394 | int rc = FitsOF->MoveToHDU(ihdu);
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395 | if(rc!=ihdu)
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396 | throw RangeCheckError("FitsABTColRd::Init: Error moving to requested HDU\n");
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397 | }
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398 | } else { // Fits file has already been positionned
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399 | if(ihdu>0 && ihdu!=HDU())
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400 | throw RangeCheckError("FitsABTColRd::Init: file already posit. at another HDU\n");
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401 | }
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402 |
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403 | // Check HDUType and set position status to TRUE
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404 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL)
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405 | throw TypeMismatchExc("FitsABTColRd::Init: HDU not ASCII/BINARY table\n");
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406 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl;
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407 | FitsOF->SetPosStatus(true);
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408 |
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409 | // Get number of columns
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410 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) {
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411 | FitsOpenFile::printerror(sta);
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412 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of columns\n");
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413 | }
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414 | if(DbgLevel>1) cout<<"...Init NBcol="<<NBcol<<endl;
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415 | if(NBcol<1)
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416 | throw RangeCheckError("FitsABTColRd::Init: Bad number of colums\n");
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417 |
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418 | // Get number of rows
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419 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) {
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420 | FitsOpenFile::printerror(sta);
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421 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of rows\n");
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422 | }
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423 | if(DbgLevel>1) cout<<"...Init NBline="<<NBline<<endl;
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424 | if(NBline<1)
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425 | throw RangeCheckError("FitsABTColRd::Init: Bad number of rows\n");
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426 |
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427 | // Get column number
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428 | char labelcol[128];
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429 | if(ColLabel.size() > 0) {
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430 | strcpy(labelcol,ColLabel.c_str());
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431 | if(fits_get_colnum(GetFitsPtr(),CASESEN,labelcol,&ColNum,&sta)) {
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432 | FitsOpenFile::printerror(sta);
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433 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting column number\n");
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434 | }
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435 | ColNum--; // Convention [0,ncol[
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436 | }
|
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437 | if(DbgLevel>1) cout<<"...Init ColNum="<<ColNum<<endl;
|
---|
438 | if(ColNum<0 || ColNum>=NBcol)
|
---|
439 | throw RangeCheckError("FitsABTColRd::Init: Bad column number\n");
|
---|
440 |
|
---|
441 | // Get column type
|
---|
442 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode,NULL,NULL,&sta)) {
|
---|
443 | FitsOpenFile::printerror(sta);
|
---|
444 | throw ParmError("FitsABTColRd::Init: Error getting column type\n");
|
---|
445 | }
|
---|
446 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode<<endl;
|
---|
447 | if(ColTypeCode==TSTRING || ColTypeCode==TCOMPLEX || ColTypeCode==TDBLCOMPLEX
|
---|
448 | || ColTypeCode<0 )
|
---|
449 | throw ParmError("FitsABTColRd::Init: Selected column is not Numerical\n");
|
---|
450 |
|
---|
451 | // Get column name back, tunit, tform
|
---|
452 | char tunit[64], tform[64], tdisp[64];
|
---|
453 | LONGLONG repeat=0; double tscale=1., tzero=0.;
|
---|
454 | int rc=0;
|
---|
455 | if(HDUType()==BINARY_TBL) {
|
---|
456 | fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform
|
---|
457 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
458 | } else {
|
---|
459 | long repeatlng;
|
---|
460 | fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform
|
---|
461 | ,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
462 | repeat = repeatlng;
|
---|
463 | }
|
---|
464 | if(rc) {
|
---|
465 | FitsOpenFile::printerror(sta);
|
---|
466 | throw RangeCheckError("FitsABTColRd::Init: Error getting the column caracteristics\n");
|
---|
467 | }
|
---|
468 | ColLabel = labelcol;
|
---|
469 | ColTUnit = tunit;
|
---|
470 | ColTForm = tform;
|
---|
471 |
|
---|
472 | // Set the buffer for reading
|
---|
473 | ChangeBuffer(blen,bsens);
|
---|
474 |
|
---|
475 | if(DbgLevel)
|
---|
476 | cout<<"FitsABTColRd::Init Num="<<ColNum<<" Label="<<ColLabel
|
---|
477 | <<" TypeCode="<<ColTypeCode<<" TUnit="<<ColTUnit<<" TForm="<<ColTForm<<endl;
|
---|
478 | if(DbgLevel>1)
|
---|
479 | cout<<" (repeat="<<repeat<<",tscale="<<tscale<<",tzero="<<tzero
|
---|
480 | <<",tdisp="<<tdisp<<")"<<endl;
|
---|
481 |
|
---|
482 | }
|
---|
483 |
|
---|
484 | /*! Destructor. */
|
---|
485 | FitsABTColRd::~FitsABTColRd()
|
---|
486 | {
|
---|
487 | Delete();
|
---|
488 | }
|
---|
489 |
|
---|
490 | /*! Delete called by the destructor */
|
---|
491 | void FitsABTColRd::Delete(void)
|
---|
492 | {
|
---|
493 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;}
|
---|
494 | LineDeb = LineFin = -1;
|
---|
495 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
496 | }
|
---|
497 |
|
---|
498 | //////////////////////////////////////////////////////////////
|
---|
499 | /*! Change the buffer caracteristiques (see creator) */
|
---|
500 | void FitsABTColRd::ChangeBuffer(long blen,long bsens)
|
---|
501 | {
|
---|
502 | long oldnbuffer = NBuffer;
|
---|
503 |
|
---|
504 | // Compute buffer caracteristics
|
---|
505 | BuffLen = (blen<=0)? 1: blen;
|
---|
506 | BuffSens = bsens;
|
---|
507 | NBuffer = BuffLen;
|
---|
508 | if(bsens==0 && NBuffer%2==0) NBuffer++;
|
---|
509 |
|
---|
510 | // De-allocate if necessary
|
---|
511 | if(Buffer!=NULL) {
|
---|
512 | // On des-alloue si pas assez de place
|
---|
513 | // ou si l'ancienne place est beaucoup trop grande (>25%)
|
---|
514 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) )
|
---|
515 | {delete [] Buffer; Buffer=NULL;}
|
---|
516 | }
|
---|
517 |
|
---|
518 | // Re-allocate
|
---|
519 | if(Buffer==NULL) Buffer = new double[NBuffer];
|
---|
520 |
|
---|
521 | // Tell program that nothing is into buffer
|
---|
522 | LineDeb = LineFin = -1;
|
---|
523 | }
|
---|
524 |
|
---|
525 | //////////////////////////////////////////////////////////////
|
---|
526 | /*!
|
---|
527 | Read a fitsheader key into double
|
---|
528 | \param keyname : name of the key
|
---|
529 | \return value into double
|
---|
530 | */
|
---|
531 | double FitsABTColRd::ReadKey(const char *keyname)
|
---|
532 | {
|
---|
533 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
534 | }
|
---|
535 |
|
---|
536 | /*!
|
---|
537 | Read a fitsheader key into long
|
---|
538 | \param keyname : name of the key
|
---|
539 | \return value into long
|
---|
540 | */
|
---|
541 | long FitsABTColRd::ReadKeyL(const char *keyname)
|
---|
542 | {
|
---|
543 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
544 | }
|
---|
545 |
|
---|
546 | /*!
|
---|
547 | Read a fitsheader key into long long
|
---|
548 | \param keyname : name of the key
|
---|
549 | \return value into long long
|
---|
550 | */
|
---|
551 | LONGLONG FitsABTColRd::ReadKeyLL(const char *keyname)
|
---|
552 | {
|
---|
553 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
554 | }
|
---|
555 |
|
---|
556 | /*!
|
---|
557 | Read a fitsheader key into string
|
---|
558 | \param keyname : name of the key
|
---|
559 | \return value into string
|
---|
560 | */
|
---|
561 | string FitsABTColRd::ReadKeyS(const char *keyname)
|
---|
562 | {
|
---|
563 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
564 | }
|
---|
565 |
|
---|
566 | /////////////////////////////////////////////////
|
---|
567 | /*!
|
---|
568 | Read row "n" and return the value into a double
|
---|
569 | \warning be carefull for the range: row = [0,NRows[
|
---|
570 | \return value in double
|
---|
571 | \param n : number of the row to be read.
|
---|
572 | \verbatim
|
---|
573 | usebuffer == true : use read optimisation with bufferisation
|
---|
574 | == false : no optimisation with bufferisation
|
---|
575 | just read one value
|
---|
576 | \endverbatim
|
---|
577 | */
|
---|
578 | double FitsABTColRd::Read(LONGLONG n,bool usebuffer)
|
---|
579 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline]
|
---|
580 | // Attention: colnum [0,NBcol[ , cfistio veut [1,NBcol]
|
---|
581 | {
|
---|
582 | int sta=0;
|
---|
583 | if(n<0 || n>=NBline)
|
---|
584 | throw RangeCheckError("FitsABTColRd::Read try to read outside line range\n");
|
---|
585 |
|
---|
586 | // Pas de bufferisation, on lit betement
|
---|
587 | if(NBuffer==1 || !usebuffer) {
|
---|
588 | NFitsRead++;
|
---|
589 | double val;
|
---|
590 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,1,1,NULL,&val,NULL,&sta);
|
---|
591 | if(sta) {
|
---|
592 | FitsOpenFile::printerror(sta);
|
---|
593 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
594 | }
|
---|
595 | // On ne remplit Buffer[0] que si on a choisit
|
---|
596 | // un mode de lecture non bufferise (n==1) DES LE DEBUT.
|
---|
597 | // Si on a initialement choisit un mode bufferise (avec n>1),
|
---|
598 | // Buffer contient les valeurs chargees auparavent.
|
---|
599 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
600 | // car on perd l'info de ces valeurs.
|
---|
601 | if(NBuffer==1) {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
602 | return val;
|
---|
603 | }
|
---|
604 |
|
---|
605 | // Gestion avec bufferisation
|
---|
606 | if(!Buffer)
|
---|
607 | throw RangeCheckError("FitsABTColRd::Read: Buffer not allocated\n");
|
---|
608 | if(n<LineDeb || n>LineFin) {
|
---|
609 | NFitsRead++;
|
---|
610 | LONGLONG row1,row2,nrow;
|
---|
611 | if(BuffSens>0) { // Cas remplissage forward
|
---|
612 | row1 = n+1;
|
---|
613 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline;
|
---|
614 | } else if(BuffSens<0) { // Cas remplissage backward
|
---|
615 | row2 = n+1;
|
---|
616 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1;
|
---|
617 | } else { // Cas remplissage centre
|
---|
618 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1;
|
---|
619 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline;
|
---|
620 | }
|
---|
621 | nrow = row2 - row1 + 1;
|
---|
622 | LineDeb = row1-1; LineFin = row2-1;
|
---|
623 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow
|
---|
624 | // <<" LineDeb,Fin="<<LineDeb<<","<<LineFin<<endl;
|
---|
625 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer,NULL,&sta);
|
---|
626 | if(sta) {
|
---|
627 | FitsOpenFile::printerror(sta);
|
---|
628 | LineDeb = LineFin = -1;
|
---|
629 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
630 | }
|
---|
631 | }
|
---|
632 |
|
---|
633 | long ibuf = n-LineDeb;
|
---|
634 | return Buffer[ibuf];
|
---|
635 | }
|
---|
636 |
|
---|
637 | /*!
|
---|
638 | Read rows from "n1" to "n2" and return the values into TVector of double
|
---|
639 | \return NREAD the number of values read (n2-n1+1).
|
---|
640 | \warning row = [0,NRows[, the routine read [n1,n2]
|
---|
641 | \verbatim
|
---|
642 | - if n2<0 then read [n1,n2] where "n2=min(n1+vector_size-1,nrows-1)"
|
---|
643 | - Last row read is ALWAYS: "n2 = n1 + NREAD -1"
|
---|
644 | - The TVector is never resized if not necessary
|
---|
645 | -------------------------------------------------------------------------
|
---|
646 | - ex: suppose the column table contains 10 elements: nrows=10, rows=[0,9]
|
---|
647 |
|
---|
648 | TVector<double> V(5);
|
---|
649 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==5 -> return 3
|
---|
650 | bt.Read(3,-1,V) -> read rows=3,4,5,6,7 -> V.Size()==5 -> return 5
|
---|
651 | bt.Read(7,-1,V) -> read rows=7,8,9 -> V.Size()==5 -> return 3
|
---|
652 | bt.Read(2,-1,V) -> read rows=2,3,4,5,6 -> V.Size()==5 -> return 5
|
---|
653 | bt.Read(-1,5,V) -> throw exception
|
---|
654 |
|
---|
655 | TVector<double> V(5);
|
---|
656 | bt.Read(3,99,V) -> read rows=3,4,5,6,7,8,9 -> V.Size()==7 -> return 7
|
---|
657 |
|
---|
658 | TVector<double> V(5);
|
---|
659 | bt.Read(2,8,V) -> read rows=2,3,4,5,6,7,8 -> V.Size()==7 -> return 7
|
---|
660 |
|
---|
661 | TVector<double> V;
|
---|
662 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==3 -> return 3
|
---|
663 |
|
---|
664 | TVector<double> V;
|
---|
665 | bt.Read(3,-1,V) -> throw exception
|
---|
666 | -------------------------------------------------------------------------
|
---|
667 | \endverbatim
|
---|
668 | */
|
---|
669 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<double>& data)
|
---|
670 | {
|
---|
671 | if(n1<0 || n1>=NBline)
|
---|
672 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
673 | if(data.Size()<=0 && n2<n1)
|
---|
674 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
675 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
676 | if(n2>=NBline) n2 = NBline-1;
|
---|
677 |
|
---|
678 | LONGLONG nread = n2-n1+1;
|
---|
679 | if(data.Size()<nread) data.SetSize(nread);
|
---|
680 |
|
---|
681 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
682 | int sta=0;
|
---|
683 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
684 | if(sta) {
|
---|
685 | FitsOpenFile::printerror(sta);
|
---|
686 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<double>: Error Reading Fits file\n");
|
---|
687 | }
|
---|
688 |
|
---|
689 | return nread;
|
---|
690 | }
|
---|
691 |
|
---|
692 | /*! idem before but for TVector of float */
|
---|
693 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<float>& data)
|
---|
694 | {
|
---|
695 | if(n1<0 || n1>=NBline)
|
---|
696 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
697 | if(data.Size()<=0 && n2<n1)
|
---|
698 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
699 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
700 | if(n2>=NBline) n2 = NBline-1;
|
---|
701 |
|
---|
702 | LONGLONG nread = n2-n1+1;
|
---|
703 | if(data.Size()<nread) data.SetSize(nread);
|
---|
704 |
|
---|
705 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
706 | int sta=0;
|
---|
707 | fits_read_col(GetFitsPtr(),TFLOAT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
708 | if(sta) {
|
---|
709 | FitsOpenFile::printerror(sta);
|
---|
710 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<float>: Error Reading Fits file\n");
|
---|
711 | }
|
---|
712 |
|
---|
713 | return nread;
|
---|
714 | }
|
---|
715 |
|
---|
716 | /*! idem before but for TVector of unsigned short */
|
---|
717 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<uint_2>& data)
|
---|
718 | {
|
---|
719 | if(n1<0 || n1>=NBline)
|
---|
720 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
721 | if(data.Size()<=0 && n2<n1)
|
---|
722 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
723 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
724 | if(n2>=NBline) n2 = NBline-1;
|
---|
725 |
|
---|
726 | LONGLONG nread = n2-n1+1;
|
---|
727 | if(data.Size()<nread) data.SetSize(nread);
|
---|
728 |
|
---|
729 | int sta=0;
|
---|
730 | fits_read_col(GetFitsPtr(),TUSHORT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
731 | if(sta) {
|
---|
732 | FitsOpenFile::printerror(sta);
|
---|
733 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<uint_2>: Error Reading Fits file\n");
|
---|
734 | }
|
---|
735 |
|
---|
736 | return nread;
|
---|
737 | }
|
---|
738 |
|
---|
739 | /*! idem before but for TVector of int_4 */
|
---|
740 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_4>& data)
|
---|
741 | {
|
---|
742 | if(n1<0 || n1>=NBline)
|
---|
743 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
744 | if(data.Size()<=0 && n2<n1)
|
---|
745 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
746 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
747 | if(n2>=NBline) n2 = NBline-1;
|
---|
748 |
|
---|
749 | LONGLONG nread = n2-n1+1;
|
---|
750 | if(data.Size()<nread) data.SetSize(nread);
|
---|
751 |
|
---|
752 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
753 | int sta=0;
|
---|
754 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
755 | fits_read_col(GetFitsPtr(),T,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
756 | if(sta) {
|
---|
757 | FitsOpenFile::printerror(sta);
|
---|
758 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_4>: Error Reading Fits file\n");
|
---|
759 | }
|
---|
760 |
|
---|
761 | return nread;
|
---|
762 | }
|
---|
763 |
|
---|
764 | /*! idem before but for TVector of int_8 */
|
---|
765 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_8>& data)
|
---|
766 | {
|
---|
767 | #ifdef TLONGLONG
|
---|
768 | if(n1<0 || n1>=NBline)
|
---|
769 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
770 | if(data.Size()<=0 && n2<n1)
|
---|
771 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
772 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
773 | if(n2>=NBline) n2 = NBline-1;
|
---|
774 |
|
---|
775 | LONGLONG nread = n2-n1+1;
|
---|
776 | if(data.Size()<nread) data.SetSize(nread);
|
---|
777 |
|
---|
778 | int sta=0;
|
---|
779 | fits_read_col(GetFitsPtr(),TLONGLONG,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
780 | if(sta) {
|
---|
781 | FitsOpenFile::printerror(sta);
|
---|
782 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_8>: Error Reading Fits file\n");
|
---|
783 | }
|
---|
784 |
|
---|
785 | return nread;
|
---|
786 | #else
|
---|
787 | throw PException("FitsABTColRd::Read(..,TVector<int_8>&) Not in that cfitsio version");
|
---|
788 | #endif
|
---|
789 | }
|
---|
790 |
|
---|
791 | /////////////////////////////////////////////////
|
---|
792 | /*!
|
---|
793 | Return the number of the first row where "val1"<=val<="val2" starting at row "rowstart"
|
---|
794 | \verbatim
|
---|
795 | - The search is performed from "rowstart" to the end
|
---|
796 | in ascending order (from "rowstart" to nrows).
|
---|
797 | - Warning: "rowstart<0" means "rowstart==0" (search all the table column)
|
---|
798 | That is the default
|
---|
799 | \endverbatim
|
---|
800 | \return <0 means not found
|
---|
801 | */
|
---|
802 | LONGLONG FitsABTColRd::FirstRow(double val1,double val2,LONGLONG rowstart)
|
---|
803 | {
|
---|
804 | LONGLONG row = -1;
|
---|
805 | if(NBline==0) return row;
|
---|
806 | // Change buffer for efficiency
|
---|
807 | long bsens=BuffSens; bool bchange=false;
|
---|
808 | if(bsens<=0) {ChangeBuffer(BuffLen,1); bchange=true;}
|
---|
809 | if(rowstart<0) rowstart = 0;
|
---|
810 | if(rowstart>=NBline) rowstart = NBline-1;
|
---|
811 | for(LONGLONG i=rowstart;i<NBline;i++) {
|
---|
812 | double val = Read(i);
|
---|
813 | if(val<val1 || val>val2) continue;
|
---|
814 | row = i;
|
---|
815 | break;
|
---|
816 | }
|
---|
817 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
818 | return row;
|
---|
819 | }
|
---|
820 |
|
---|
821 | /*!
|
---|
822 | Return the number of the first row where val1<=val<=val2 starting at row rowstart
|
---|
823 | \return <0 means not found
|
---|
824 | \verbatim
|
---|
825 | - The search is performed from "rowstart" to the beginning
|
---|
826 | in descending order (from "rowstart" to 0).
|
---|
827 | - Warning: "rowstart<0" means "rowstart==nrows-1" (search all the table column)
|
---|
828 | That is the default
|
---|
829 | \endverbatim
|
---|
830 | */
|
---|
831 | LONGLONG FitsABTColRd::LastRow(double val1,double val2,LONGLONG rowstart)
|
---|
832 | {
|
---|
833 | LONGLONG row = -1;
|
---|
834 | if(NBline==0) return row;
|
---|
835 | // Change buffer for efficiency
|
---|
836 | long bsens=BuffSens; bool bchange=false;
|
---|
837 | if(bsens>=0) {ChangeBuffer(BuffLen,-1); bchange=true;}
|
---|
838 | if(rowstart<0 || rowstart>=NBline) rowstart = NBline-1;
|
---|
839 | for(LONGLONG i=rowstart;i>=0;i--) {
|
---|
840 | double val = Read(i);
|
---|
841 | if(val<val1 || val>val2) continue;
|
---|
842 | row = i;
|
---|
843 | break;
|
---|
844 | }
|
---|
845 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
846 | return row;
|
---|
847 | }
|
---|
848 |
|
---|
849 | /*! Print on stream os */
|
---|
850 | void FitsABTColRd::Print(ostream& os,int lp) const
|
---|
851 | {
|
---|
852 | os<<"FitsABTColRd:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")"
|
---|
853 | <<" ncols="<<NBcol<<" nrows="<<NBline;
|
---|
854 | if(lp>0) os<<" NRead="<<NFitsRead;
|
---|
855 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"
|
---|
856 | <<"\n... Label["<<ColNum<<"]="<<ColLabel<<" TypeCode="<<ColTypeCode
|
---|
857 | <<" TUnit="<<ColTUnit<<" TForm="<<ColTForm
|
---|
858 | <<endl;
|
---|
859 | }
|
---|
860 |
|
---|
861 | ///////////////////////////////////////////////////////////////////
|
---|
862 | ///////////////////////////////////////////////////////////////////
|
---|
863 | ///////////////////////////////////////////////////////////////////
|
---|
864 | ///////////////////////////////////////////////////////////////////
|
---|
865 |
|
---|
866 | //! Class for reading a column in a FITS ASCII or BINARY table with fits file opening
|
---|
867 |
|
---|
868 | /*!
|
---|
869 | \class SOPHYA::FitsABTColRead
|
---|
870 | \ingroup FitsIOServer
|
---|
871 | Class for reading a column in a FITS ASCII or BINARY table with fits file opening.
|
---|
872 | The FITS file is opened each time you instanciate a FitsABTColRead.
|
---|
873 | So reading "n" columns of the same FITS table by instanciating "n"
|
---|
874 | FitsABTColRead, will open "n" times te FITS file.
|
---|
875 | Use FitsABTColRd if you want to open the FITS file only once.
|
---|
876 | \verbatim
|
---|
877 | -- Exemple:
|
---|
878 | FitsABTColRead fbt("myfits.fits","BoloMuv_28",0,1000,1,3);
|
---|
879 | fbt.SetDebug(3);
|
---|
880 | fbt.Print(3);
|
---|
881 | // Read element by element
|
---|
882 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) {
|
---|
883 | double x = fbt.Read(i);
|
---|
884 | if(i%lpmod==0) cout<<i<<": "<<x<<endl;
|
---|
885 | }
|
---|
886 | // Read into a vector
|
---|
887 | TVector<double> data;
|
---|
888 | LONGLONG n = fbt.Read(32,50,data);
|
---|
889 | cout<<"Number of values read: "<<n<<endl;
|
---|
890 | data.ReSize(100);
|
---|
891 | n = fbt.Read(10,-1,data);
|
---|
892 | cout<<"Number of values read: "<<n<<endl;
|
---|
893 | \endverbatim
|
---|
894 | */
|
---|
895 |
|
---|
896 |
|
---|
897 | //////////////////////////////////////////////////////////////
|
---|
898 | /*!
|
---|
899 | Constructor.
|
---|
900 | \param fname : FITS file name to be read
|
---|
901 | \param collabel : label of the column to be read
|
---|
902 | \param ihdu : number of the HDU where the column is.
|
---|
903 | \param blen : read buffer length
|
---|
904 | \param bsens : buffer reading direction
|
---|
905 | \param lp : debug level
|
---|
906 | \verbatim
|
---|
907 | - if ihdu<=0 first BINARY or ASCII table is taken
|
---|
908 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
909 | - bsens>0 read forward
|
---|
910 | bsens<0 read backward
|
---|
911 | bsens==0 read centered
|
---|
912 | \endverbatim
|
---|
913 | \warning ihdu = [1,nhdu]
|
---|
914 | */
|
---|
915 | FitsABTColRead::FitsABTColRead(string fname,string collabel
|
---|
916 | ,int ihdu,long blen,long bsens,int lp)
|
---|
917 | : FitsABTColRd(new FitsOpenFile(fname),collabel,ihdu,blen,bsens,lp)
|
---|
918 | {
|
---|
919 | }
|
---|
920 |
|
---|
921 | /*!
|
---|
922 | Constructor.
|
---|
923 | Same as before but the column is identified by its column number
|
---|
924 | \param colnum : number of the column to be read
|
---|
925 | \warning col = [0,ncol[
|
---|
926 | */
|
---|
927 | FitsABTColRead::FitsABTColRead(string fname,int colnum
|
---|
928 | ,int ihdu,long blen,long bsens,int lp)
|
---|
929 | : FitsABTColRd(new FitsOpenFile(fname),colnum,ihdu,blen,bsens,lp)
|
---|
930 | {
|
---|
931 | }
|
---|
932 |
|
---|
933 | /*! Constructor. see below */
|
---|
934 | FitsABTColRead::FitsABTColRead(const char * cfname,const char* collabel
|
---|
935 | ,int ihdu,long blen,long bsens,int lp)
|
---|
936 | : FitsABTColRd(new FitsOpenFile(cfname),collabel,ihdu,blen,bsens,lp)
|
---|
937 | {
|
---|
938 | }
|
---|
939 |
|
---|
940 | /*! Constructor. see below */
|
---|
941 | FitsABTColRead::FitsABTColRead(const char * cfname,int colnum
|
---|
942 | ,int ihdu,long blen,long bsens,int lp)
|
---|
943 | : FitsABTColRd(new FitsOpenFile(cfname),colnum,ihdu,blen,bsens,lp)
|
---|
944 | {
|
---|
945 | }
|
---|
946 | /*! Constructor by default */
|
---|
947 | FitsABTColRead::FitsABTColRead()
|
---|
948 | : FitsABTColRd()
|
---|
949 | {
|
---|
950 | }
|
---|
951 |
|
---|
952 | /*! Constructor by copy */
|
---|
953 | FitsABTColRead::FitsABTColRead(FitsABTColRead& fbt)
|
---|
954 | {
|
---|
955 | // --- ATTENTION ---
|
---|
956 | // FitsABTColRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
957 | FitsOpenFile* fof = new FitsOpenFile(*fbt.GetFitsOpenFile());
|
---|
958 | Init(fof,fbt.GetColLabel().c_str()
|
---|
959 | ,fbt.GetColNum(),fbt.HDU()
|
---|
960 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
|
---|
961 | }
|
---|
962 |
|
---|
963 | /*! Destructor. */
|
---|
964 | FitsABTColRead::~FitsABTColRead()
|
---|
965 | {
|
---|
966 | Delete(); // ?? inutile ??
|
---|
967 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
968 | if(FitsOF!=NULL) delete FitsOF;
|
---|
969 | }
|
---|
970 |
|
---|
971 | ///////////////////////////////////////////////////////////////////
|
---|
972 | ///////////////////////////////////////////////////////////////////
|
---|
973 | ///////////////////////////////////////////////////////////////////
|
---|
974 | ///////////////////////////////////////////////////////////////////
|
---|
975 |
|
---|
976 | FitsABTColRd1F::FitsABTColRd1F(FitsOpenFile* fof,int ihdu,long blen,long bsens,int lp)
|
---|
977 | {
|
---|
978 | Init(fof,ihdu,blen,bsens,lp);
|
---|
979 | }
|
---|
980 |
|
---|
981 | /*! Init routine called by the constructor */
|
---|
982 | void FitsABTColRd1F::Init(FitsOpenFile* fof,int ihdu,long blen,long bsens,int lp)
|
---|
983 | {
|
---|
984 | // Initialisation des Parametres Generaux
|
---|
985 | ColLabel.resize(0); ColTUnit.resize(0); ColTForm.resize(0); ColTypeCode.resize(0);
|
---|
986 | NBcol = 0; NBline = 0;
|
---|
987 | SetNulVal(); SetDebug(lp);
|
---|
988 | FitsOF = NULL;
|
---|
989 | LineDeb.resize(0); LineFin.resize(0);
|
---|
990 | Buffer = NULL;
|
---|
991 |
|
---|
992 | // Caracteristiques du FitsOpenFile
|
---|
993 | FitsOF = fof;
|
---|
994 | if(FitsOF==NULL)
|
---|
995 | throw NullPtrError("FitsABTColRd1F::Init: FitsOpenFile pointer is NULL\n");
|
---|
996 |
|
---|
997 | if(GetFitsPtr()==NULL)
|
---|
998 | throw NullPtrError("FitsABTColRd1F::Init: FitsPtr pointer is NULL\n");
|
---|
999 |
|
---|
1000 | int sta = 0;
|
---|
1001 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1002 |
|
---|
1003 | // Get HDU for bin/ascii table
|
---|
1004 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU,
|
---|
1005 | // une classe utilisant ce fichier doit le positionner sur un HDU.
|
---|
1006 | // Par contre, si une autre classe utilise ce meme FitsOpenFile,
|
---|
1007 | // elle ne peut le positionner que sur ce meme HDU !
|
---|
1008 | if(FitsOF->GetPosStatus()==false) {
|
---|
1009 | if(ihdu==0) { // find the first BINARY then the first ASCII
|
---|
1010 | int rc = FitsOF->MoveToFirst(BINARY_TBL);
|
---|
1011 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL);
|
---|
1012 | } else {
|
---|
1013 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1014 | if(rc!=ihdu)
|
---|
1015 | throw RangeCheckError("FitsABTColRd1F::Init: Error moving to requested HDU\n");
|
---|
1016 | }
|
---|
1017 | } else { // Fits file has already been positionned
|
---|
1018 | if(ihdu>0 && ihdu!=HDU())
|
---|
1019 | throw RangeCheckError("FitsABTColRd1F::Init: file already posit. at another HDU\n");
|
---|
1020 | }
|
---|
1021 |
|
---|
1022 | // Check HDUType and set position status to TRUE
|
---|
1023 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL)
|
---|
1024 | throw TypeMismatchExc("FitsABTColRd1F::Init: HDU not ASCII/BINARY table\n");
|
---|
1025 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl;
|
---|
1026 | FitsOF->SetPosStatus(true);
|
---|
1027 |
|
---|
1028 | // Get number of columns
|
---|
1029 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) {
|
---|
1030 | FitsOpenFile::printerror(sta);
|
---|
1031 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of columns\n");
|
---|
1032 | }
|
---|
1033 | if(DbgLevel>1) cout<<"...Init NBcol="<<NBcol<<endl;
|
---|
1034 | if(NBcol<1)
|
---|
1035 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of colums\n");
|
---|
1036 |
|
---|
1037 | // Get number of rows
|
---|
1038 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) {
|
---|
1039 | FitsOpenFile::printerror(sta);
|
---|
1040 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of rows\n");
|
---|
1041 | }
|
---|
1042 | if(DbgLevel>1) cout<<"...Init NBline="<<NBline<<endl;
|
---|
1043 | if(NBline<1)
|
---|
1044 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of rows\n");
|
---|
1045 |
|
---|
1046 | // --- Boucle sur les colonnes
|
---|
1047 | for(int ColNum=0;ColNum<NBcol;ColNum++) { // ***** ColNum
|
---|
1048 | // Get column type
|
---|
1049 | ColTypeCode.push_back(-999);
|
---|
1050 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode[ColNum],NULL,NULL,&sta)) {
|
---|
1051 | FitsOpenFile::printerror(sta);
|
---|
1052 | throw ParmError("FitsABTColRd1F::Init: Error getting column type\n");
|
---|
1053 | }
|
---|
1054 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode[ColNum]<<endl;
|
---|
1055 | if(ColTypeCode[ColNum]==TSTRING || ColTypeCode[ColNum]==TCOMPLEX
|
---|
1056 | || ColTypeCode[ColNum]==TDBLCOMPLEX || ColTypeCode[ColNum]<0 )
|
---|
1057 | throw ParmError("FitsABTColRd1F::Init: Selected column is not Numerical\n");
|
---|
1058 | // Get column name, tunit, tform
|
---|
1059 | char labelcol[128];
|
---|
1060 | char tunit[64], tform[64], tdisp[64];
|
---|
1061 | LONGLONG repeat=0; double tscale=1., tzero=0.;
|
---|
1062 | int rc=0;
|
---|
1063 | if(HDUType()==BINARY_TBL) {
|
---|
1064 | fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform
|
---|
1065 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
1066 | } else {
|
---|
1067 | long repeatlng;
|
---|
1068 | fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform
|
---|
1069 | ,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
1070 | repeat = repeatlng;
|
---|
1071 | }
|
---|
1072 | if(rc) {
|
---|
1073 | FitsOpenFile::printerror(sta);
|
---|
1074 | throw RangeCheckError("FitsABTColRd1F::Init: Error getting the column caracteristics\n");
|
---|
1075 | }
|
---|
1076 | ColLabel.push_back(labelcol);
|
---|
1077 | ColTUnit.push_back(tunit);
|
---|
1078 | ColTForm.push_back(tform);
|
---|
1079 | // fill the default buffer limits at init
|
---|
1080 | LineDeb.push_back(-1);
|
---|
1081 | LineFin.push_back(-1);
|
---|
1082 | // some debug print if requested
|
---|
1083 | if(DbgLevel)
|
---|
1084 | cout<<"FitsABTColRd1F::Init Num="<<ColNum<<" Label="<<ColLabel[ColNum]
|
---|
1085 | <<" TypeCode="<<ColTypeCode[ColNum]<<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum]<<endl;
|
---|
1086 | if(DbgLevel>1)
|
---|
1087 | cout<<" (repeat="<<repeat<<",tscale="<<tscale<<",tzero="<<tzero
|
---|
1088 | <<",tdisp="<<tdisp<<")"<<endl;
|
---|
1089 | } // ***** ColNum
|
---|
1090 |
|
---|
1091 | // Set the buffer for reading
|
---|
1092 | ChangeBuffer(blen,bsens);
|
---|
1093 |
|
---|
1094 | }
|
---|
1095 |
|
---|
1096 | /*! Destructor. */
|
---|
1097 | FitsABTColRd1F::~FitsABTColRd1F()
|
---|
1098 | {
|
---|
1099 | Delete();
|
---|
1100 | }
|
---|
1101 |
|
---|
1102 | /*! Delete called by the destructor */
|
---|
1103 | void FitsABTColRd1F::Delete(void)
|
---|
1104 | {
|
---|
1105 | if(NBcol>0 && Buffer!=NULL) {
|
---|
1106 | for(int ColNum=0; ColNum<NBcol; ColNum++)
|
---|
1107 | if(Buffer[ColNum]!=NULL) delete [] Buffer[ColNum];
|
---|
1108 | delete [] Buffer; Buffer=NULL;
|
---|
1109 | }
|
---|
1110 | LineDeb.resize(0); LineFin.resize(0);
|
---|
1111 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1112 | }
|
---|
1113 |
|
---|
1114 | //////////////////////////////////////////////////////////////
|
---|
1115 | /*! Change the buffer caracteristiques (see creator) */
|
---|
1116 | void FitsABTColRd1F::ChangeBuffer(long blen,long bsens)
|
---|
1117 | {
|
---|
1118 | long oldnbuffer = NBuffer;
|
---|
1119 |
|
---|
1120 | // Compute buffer caracteristics
|
---|
1121 | BuffLen = (blen<=0)? 1: blen;
|
---|
1122 | BuffSens = bsens;
|
---|
1123 | NBuffer = BuffLen;
|
---|
1124 | if(bsens==0 && NBuffer%2==0) NBuffer++;
|
---|
1125 |
|
---|
1126 | // De-allocate if necessary
|
---|
1127 | if(Buffer!=NULL) {
|
---|
1128 | // On des-alloue si pas assez de place
|
---|
1129 | // ou si l'ancienne place est beaucoup trop grande (>25%)
|
---|
1130 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) ) {
|
---|
1131 | for(int ColNum=0; ColNum<NBcol; ColNum++) if(Buffer[ColNum]!=NULL) delete [] Buffer[ColNum];
|
---|
1132 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;}
|
---|
1133 | }
|
---|
1134 | }
|
---|
1135 |
|
---|
1136 | // Re-allocate
|
---|
1137 | if(Buffer==NULL) {
|
---|
1138 | Buffer = new double*[NBcol];
|
---|
1139 | for(int ColNum=0; ColNum<NBcol; ColNum++) Buffer[ColNum] = new double[NBuffer];
|
---|
1140 | }
|
---|
1141 |
|
---|
1142 | // Tell program that nothing is into buffer
|
---|
1143 | for(int ColNum=0; ColNum<NBcol; ColNum++) LineDeb[ColNum] = LineFin[ColNum] = -1;
|
---|
1144 | }
|
---|
1145 |
|
---|
1146 | //////////////////////////////////////////////////////////////
|
---|
1147 | /*!
|
---|
1148 | Read a fitsheader key into double
|
---|
1149 | \param keyname : name of the key
|
---|
1150 | \return value into double
|
---|
1151 | */
|
---|
1152 | double FitsABTColRd1F::ReadKey(const char *keyname)
|
---|
1153 | {
|
---|
1154 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1155 | }
|
---|
1156 |
|
---|
1157 | /*!
|
---|
1158 | Read a fitsheader key into long
|
---|
1159 | \param keyname : name of the key
|
---|
1160 | \return value into long
|
---|
1161 | */
|
---|
1162 | long FitsABTColRd1F::ReadKeyL(const char *keyname)
|
---|
1163 | {
|
---|
1164 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1165 | }
|
---|
1166 |
|
---|
1167 | /*!
|
---|
1168 | Read a fitsheader key into long long
|
---|
1169 | \param keyname : name of the key
|
---|
1170 | \return value into long long
|
---|
1171 | */
|
---|
1172 | LONGLONG FitsABTColRd1F::ReadKeyLL(const char *keyname)
|
---|
1173 | {
|
---|
1174 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1175 | }
|
---|
1176 |
|
---|
1177 | /*!
|
---|
1178 | Read a fitsheader key into string
|
---|
1179 | \param keyname : name of the key
|
---|
1180 | \return value into string
|
---|
1181 | */
|
---|
1182 | string FitsABTColRd1F::ReadKeyS(const char *keyname)
|
---|
1183 | {
|
---|
1184 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1185 | }
|
---|
1186 |
|
---|
1187 | /////////////////////////////////////////////////
|
---|
1188 | int FitsABTColRd1F::GetColNum(const char *colname)
|
---|
1189 | // Get column number from column name
|
---|
1190 | {
|
---|
1191 | if(strlen(colname)<1 || NBcol<1) return -1;
|
---|
1192 | string slab(colname);
|
---|
1193 | for(int ColNum=0;ColNum<NBcol;ColNum++)
|
---|
1194 | if(slab == ColLabel[ColNum]) return ColNum;
|
---|
1195 | return -1;
|
---|
1196 | }
|
---|
1197 |
|
---|
1198 | /////////////////////////////////////////////////
|
---|
1199 | /*!
|
---|
1200 | Read row "n" of column "ColNum" and return the value into a double
|
---|
1201 | \warning be carefull for the range: row = [0,NRows[
|
---|
1202 | \return value in double
|
---|
1203 | \param n : number of the row to be read.
|
---|
1204 | \verbatim
|
---|
1205 | usebuffer == true : use read optimisation with bufferisation
|
---|
1206 | == false : no optimisation with bufferisation
|
---|
1207 | just read one value
|
---|
1208 | \endverbatim
|
---|
1209 | */
|
---|
1210 | double FitsABTColRd1F::Read(int ColNum,LONGLONG n,bool usebuffer)
|
---|
1211 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline]
|
---|
1212 | // Attention: colnum [0,NBcol[ , cfistio veut [1,NBcol]
|
---|
1213 | {
|
---|
1214 | int sta=0;
|
---|
1215 | if(ColNum<0 || ColNum>=NBcol)
|
---|
1216 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside column range\n");
|
---|
1217 | if(n<0 || n>=NBline)
|
---|
1218 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside line range\n");
|
---|
1219 |
|
---|
1220 | // Pas de bufferisation, on lit betement
|
---|
1221 | if(NBuffer==1 || !usebuffer) {
|
---|
1222 | double val;
|
---|
1223 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,1,1,NULL,&val,NULL,&sta);
|
---|
1224 | if(sta) {
|
---|
1225 | FitsOpenFile::printerror(sta);
|
---|
1226 | throw NotAvailableOperation("FitsABTColRd1F::Read: Error Reading Fits file\n");
|
---|
1227 | }
|
---|
1228 | // On ne remplit Buffer[ColNum][0] que si on a choisit
|
---|
1229 | // un mode de lecture non bufferise (n==1) DES LE DEBUT.
|
---|
1230 | // Si on a initialement choisit un mode bufferise (avec n>1),
|
---|
1231 | // Buffer contient les valeurs chargees auparavent.
|
---|
1232 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
1233 | // car on perd l'info de ces valeurs.
|
---|
1234 | if(NBuffer==1) {Buffer[ColNum][0]=val; LineDeb[ColNum]=LineFin[ColNum]=n;}
|
---|
1235 | return val;
|
---|
1236 | }
|
---|
1237 |
|
---|
1238 | // Gestion avec bufferisation
|
---|
1239 | if(!Buffer)
|
---|
1240 | throw RangeCheckError("FitsABTColRd1F::Read: Buffer not allocated\n");
|
---|
1241 | if(n<LineDeb[ColNum] || n>LineFin[ColNum]) {
|
---|
1242 | LONGLONG row1,row2,nrow;
|
---|
1243 | if(BuffSens>0) { // Cas remplissage forward
|
---|
1244 | row1 = n+1;
|
---|
1245 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline;
|
---|
1246 | } else if(BuffSens<0) { // Cas remplissage backward
|
---|
1247 | row2 = n+1;
|
---|
1248 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1;
|
---|
1249 | } else { // Cas remplissage centre
|
---|
1250 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1;
|
---|
1251 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline;
|
---|
1252 | }
|
---|
1253 | nrow = row2 - row1 + 1;
|
---|
1254 | LineDeb[ColNum] = row1-1; LineFin[ColNum] = row2-1;
|
---|
1255 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow
|
---|
1256 | // <<" LineDeb,Fin="<<LineDeb[ColNum]<<","<<LineFin[ColNum]<<endl;
|
---|
1257 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer[ColNum],NULL,&sta);
|
---|
1258 | if(sta) {
|
---|
1259 | FitsOpenFile::printerror(sta);
|
---|
1260 | LineDeb[ColNum] = LineFin[ColNum] = -1;
|
---|
1261 | throw NotAvailableOperation("FitsABTColRd1F::Read: Error Reading Fits file\n");
|
---|
1262 | }
|
---|
1263 | }
|
---|
1264 |
|
---|
1265 | long ibuf = n-LineDeb[ColNum];
|
---|
1266 | return Buffer[ColNum][ibuf];
|
---|
1267 | }
|
---|
1268 |
|
---|
1269 |
|
---|
1270 | /*! Print on stream os */
|
---|
1271 | void FitsABTColRd1F::Print(ostream& os,int lp) const
|
---|
1272 | {
|
---|
1273 | os<<"FitsABTColRd1F:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")"
|
---|
1274 | <<" ncols="<<NBcol<<" nrows="<<NBline;
|
---|
1275 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"<<endl;
|
---|
1276 | if(lp>0 && NBcol>0) {
|
---|
1277 | for(int ColNum=0;ColNum<NBcol;ColNum++) {
|
---|
1278 | os<<"..Col="<<ColNum<<" Label="<<ColLabel[ColNum]<<" TypeCode="<<ColTypeCode[ColNum]
|
---|
1279 | <<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum]
|
---|
1280 | <<endl;
|
---|
1281 | }
|
---|
1282 | }
|
---|
1283 | }
|
---|
1284 |
|
---|
1285 | ///////////////////////////////////////////////////////////////////
|
---|
1286 | ///////////////////////////////////////////////////////////////////
|
---|
1287 | ///////////////////////////////////////////////////////////////////
|
---|
1288 | ///////////////////////////////////////////////////////////////////
|
---|
1289 |
|
---|
1290 | /*!
|
---|
1291 | Constructor.
|
---|
1292 | Same as before but the column is identified by its column number
|
---|
1293 | \param colnum : number of the column to be read
|
---|
1294 | \warning col = [0,ncol[
|
---|
1295 | */
|
---|
1296 | FitsABTColRead1F::FitsABTColRead1F(string fname,int ihdu,long blen,long bsens,int lp)
|
---|
1297 | : FitsABTColRd1F(new FitsOpenFile(fname),ihdu,blen,bsens,lp)
|
---|
1298 | {
|
---|
1299 | }
|
---|
1300 |
|
---|
1301 | /*! Constructor. see below */
|
---|
1302 | FitsABTColRead1F::FitsABTColRead1F(const char * cfname,int ihdu,long blen,long bsens,int lp)
|
---|
1303 | : FitsABTColRd1F(new FitsOpenFile(cfname),ihdu,blen,bsens,lp)
|
---|
1304 | {
|
---|
1305 | }
|
---|
1306 |
|
---|
1307 | /*! Destructor. */
|
---|
1308 | FitsABTColRead1F::~FitsABTColRead1F()
|
---|
1309 | {
|
---|
1310 | Delete(); // ?? inutile ??
|
---|
1311 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
1312 | if(FitsOF!=NULL) delete FitsOF;
|
---|
1313 | }
|
---|
1314 |
|
---|
1315 | ///////////////////////////////////////////////////////////////////
|
---|
1316 | ///////////////////////////////////////////////////////////////////
|
---|
1317 | ///////////////////////////////////////////////////////////////////
|
---|
1318 | ///////////////////////////////////////////////////////////////////
|
---|
1319 |
|
---|
1320 | //! Class for reading a 2D image from a FITS file
|
---|
1321 |
|
---|
1322 | /*!
|
---|
1323 | \class SOPHYA::FitsImg2DRd
|
---|
1324 | \ingroup FitsIOServer
|
---|
1325 | Class for reading a 2D image from a FITS file
|
---|
1326 | */
|
---|
1327 |
|
---|
1328 | //////////////////////////////////////////////////////////////
|
---|
1329 | /*!
|
---|
1330 | Constructor.
|
---|
1331 | \param fof : Pointer to the Class for opening the FITS file
|
---|
1332 | \param ihdu : number of the HDU where the image is.
|
---|
1333 | \param lp : debug level
|
---|
1334 | \verbatim
|
---|
1335 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1336 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1337 | \endverbatim
|
---|
1338 | \warning ihdu = [1,nhdu]
|
---|
1339 | */
|
---|
1340 | FitsImg2DRd::FitsImg2DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1341 | {
|
---|
1342 | Init(fof,ihdu,lp);
|
---|
1343 | }
|
---|
1344 |
|
---|
1345 | /*! Constructor by copy */
|
---|
1346 | FitsImg2DRd::FitsImg2DRd(FitsImg2DRd& fbt)
|
---|
1347 | {
|
---|
1348 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
1349 | }
|
---|
1350 |
|
---|
1351 | /*! Constructor by default */
|
---|
1352 | FitsImg2DRd::FitsImg2DRd()
|
---|
1353 | {
|
---|
1354 | Naxis[0] = Naxis[1] = 0;
|
---|
1355 | SetNulVal(); SetDebug(0);
|
---|
1356 | FitsOF = NULL;
|
---|
1357 | }
|
---|
1358 |
|
---|
1359 | /*! Init routine called by the constructor */
|
---|
1360 | void FitsImg2DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1361 | {
|
---|
1362 | // Initialisation des Parametres Generaux
|
---|
1363 | Naxis[0] = Naxis[1] = 0;
|
---|
1364 | SetNulVal(); SetDebug(lp);
|
---|
1365 | FitsOF = NULL;
|
---|
1366 |
|
---|
1367 | // Caracteristiques du FitsOpenFile
|
---|
1368 | FitsOF = fof;
|
---|
1369 | if(FitsOF==NULL)
|
---|
1370 | throw NullPtrError("FitsImg2DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
1371 |
|
---|
1372 | if(GetFitsPtr()==NULL)
|
---|
1373 | throw NullPtrError("FitsImg2DRd::Init: FitsPtr pointer is NULL\n");
|
---|
1374 |
|
---|
1375 | int sta = 0;
|
---|
1376 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1377 |
|
---|
1378 | // Get HDU 2D image
|
---|
1379 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
1380 | if(FitsOF->GetPosStatus()==false) {
|
---|
1381 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
1382 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
1383 | } else {
|
---|
1384 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1385 | if(rc!=ihdu)
|
---|
1386 | throw RangeCheckError("FitsImg2DRd::Init: Error moving to requested HDU\n");
|
---|
1387 | }
|
---|
1388 | } else { // Fits file has already been positionned
|
---|
1389 | if(ihdu>0 && ihdu!=HDU())
|
---|
1390 | throw RangeCheckError("FitsImg2DRd::Init: file already posit. at another HDU\n");
|
---|
1391 | }
|
---|
1392 |
|
---|
1393 | // Check HDUType and set position status to TRUE
|
---|
1394 | if(HDUType()!=IMAGE_HDU)
|
---|
1395 | throw TypeMismatchExc("FitsImg2DRd::Init: HDU not IMAGE_HDU\n");
|
---|
1396 | FitsOF->SetPosStatus(true);
|
---|
1397 |
|
---|
1398 | // Get NAXIS 1 et 2
|
---|
1399 | int nfound=0;
|
---|
1400 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h
|
---|
1401 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,2,Naxis,&nfound,&sta)) {
|
---|
1402 | FitsOpenFile::printerror(sta);
|
---|
1403 | throw RangeCheckError("FitsImg2DRd::Init: Error reading NAXIS cards\n");
|
---|
1404 | }
|
---|
1405 | if(DbgLevel>1)
|
---|
1406 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
1407 | <<Naxis[1]<<" (nfound="<<nfound<<")"<<endl;
|
---|
1408 | if(nfound!=2 || Naxis[0]<=0 || Naxis[1]<=0)
|
---|
1409 | throw NotAvailableOperation("FitsImg2DRd::Init: bad Naxis[0-1] value\n");
|
---|
1410 |
|
---|
1411 | }
|
---|
1412 |
|
---|
1413 | /*! Destructor. */
|
---|
1414 | FitsImg2DRd::~FitsImg2DRd()
|
---|
1415 | {
|
---|
1416 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1417 | Naxis[0] = Naxis[1] = 0;
|
---|
1418 | }
|
---|
1419 |
|
---|
1420 | //////////////////////////////////////////////////////////////
|
---|
1421 | /*!
|
---|
1422 | Read a fitsheader key into double
|
---|
1423 | \param keyname : name of the key
|
---|
1424 | \return value into double
|
---|
1425 | */
|
---|
1426 | double FitsImg2DRd::ReadKey(const char *keyname)
|
---|
1427 | {
|
---|
1428 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1429 | }
|
---|
1430 |
|
---|
1431 | /*!
|
---|
1432 | Read a fitsheader key into long
|
---|
1433 | \param keyname : name of the key
|
---|
1434 | \return value into long
|
---|
1435 | */
|
---|
1436 | long FitsImg2DRd::ReadKeyL(const char *keyname)
|
---|
1437 | {
|
---|
1438 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1439 | }
|
---|
1440 |
|
---|
1441 | /*!
|
---|
1442 | Read a fitsheader key into long long
|
---|
1443 | \param keyname : name of the key
|
---|
1444 | \return value into long long
|
---|
1445 | */
|
---|
1446 | LONGLONG FitsImg2DRd::ReadKeyLL(const char *keyname)
|
---|
1447 | {
|
---|
1448 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1449 | }
|
---|
1450 |
|
---|
1451 | /*!
|
---|
1452 | Read a fitsheader key into string
|
---|
1453 | \param keyname : name of the key
|
---|
1454 | \return value into string
|
---|
1455 | */
|
---|
1456 | string FitsImg2DRd::ReadKeyS(const char *keyname)
|
---|
1457 | {
|
---|
1458 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1459 | }
|
---|
1460 |
|
---|
1461 | //////////////////////////////////////////////////////////////
|
---|
1462 | /* REMARQUE:
|
---|
1463 | * Si une image FITS a NAXIS1=100 et NAXIS2=50
|
---|
1464 | * alors un tableau 2D juste assez grand pour contenir l'image
|
---|
1465 | * doit etre declare array[50][100] (et non pas array[100][50])
|
---|
1466 | * array[NAXIS2][NAXIS1]
|
---|
1467 | */
|
---|
1468 | /*!
|
---|
1469 | Read image into a TMatrix<uint_2>
|
---|
1470 | \warning TMatrix data(Naxis2,Naxis1)
|
---|
1471 | */
|
---|
1472 | LONGLONG FitsImg2DRd::Read(TMatrix<uint_2>& data)
|
---|
1473 | {
|
---|
1474 | int sta=0;
|
---|
1475 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
1476 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1477 |
|
---|
1478 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1479 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1480 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1481 | if(sta) {
|
---|
1482 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1483 | throw
|
---|
1484 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<uint_2>): Error Reading Fits file\n");
|
---|
1485 | }
|
---|
1486 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1487 | }
|
---|
1488 |
|
---|
1489 | delete [] arr;
|
---|
1490 | return Naxis[0]*Naxis[1];
|
---|
1491 | }
|
---|
1492 |
|
---|
1493 | /*! Read image into a TMatrix<int_4> */
|
---|
1494 | LONGLONG FitsImg2DRd::Read(TMatrix<int_4>& data)
|
---|
1495 | {
|
---|
1496 | int sta=0;
|
---|
1497 | int_4* arr = new int_4[Naxis[0]];
|
---|
1498 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1499 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
1500 |
|
---|
1501 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1502 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1503 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1504 | if(sta) {
|
---|
1505 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1506 | throw
|
---|
1507 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_4>): Error Reading Fits file\n");
|
---|
1508 | }
|
---|
1509 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1510 | }
|
---|
1511 |
|
---|
1512 | delete [] arr;
|
---|
1513 | return Naxis[0]*Naxis[1];
|
---|
1514 | }
|
---|
1515 |
|
---|
1516 | /*! Read image into a TMatrix<int_8> */
|
---|
1517 | LONGLONG FitsImg2DRd::Read(TMatrix<int_8>& data)
|
---|
1518 | {
|
---|
1519 | int sta=0;
|
---|
1520 | int_8* arr = new int_8[Naxis[0]];
|
---|
1521 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1522 |
|
---|
1523 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1524 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1525 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1526 | if(sta) {
|
---|
1527 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1528 | throw
|
---|
1529 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_8>): Error Reading Fits file\n");
|
---|
1530 | }
|
---|
1531 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1532 | }
|
---|
1533 |
|
---|
1534 | delete [] arr;
|
---|
1535 | return Naxis[0]*Naxis[1];
|
---|
1536 | }
|
---|
1537 |
|
---|
1538 | /*! Read image into a TMatrix<float> */
|
---|
1539 | LONGLONG FitsImg2DRd::Read(TMatrix<float>& data)
|
---|
1540 | {
|
---|
1541 | int sta=0;
|
---|
1542 | float* arr = new float[Naxis[0]];
|
---|
1543 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1544 |
|
---|
1545 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1546 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1547 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1548 | if(sta) {
|
---|
1549 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1550 | throw
|
---|
1551 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<float>): Error Reading Fits file\n");
|
---|
1552 | }
|
---|
1553 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1554 | }
|
---|
1555 |
|
---|
1556 | delete [] arr;
|
---|
1557 | return Naxis[0]*Naxis[1];
|
---|
1558 | }
|
---|
1559 |
|
---|
1560 | /*! Read image into a TMatrix<double> */
|
---|
1561 | LONGLONG FitsImg2DRd::Read(TMatrix<double>& data)
|
---|
1562 | {
|
---|
1563 | int sta=0;
|
---|
1564 | double* arr = new double[Naxis[0]];
|
---|
1565 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1566 |
|
---|
1567 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1568 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1569 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1570 | if(sta) {
|
---|
1571 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1572 | throw
|
---|
1573 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<double>): Error Reading Fits file\n");
|
---|
1574 | }
|
---|
1575 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1576 | }
|
---|
1577 |
|
---|
1578 | delete [] arr;
|
---|
1579 | return Naxis[0]*Naxis[1];
|
---|
1580 | }
|
---|
1581 |
|
---|
1582 | /*! Read image pixel numcol,numrow with numcol=[0,Naxis1[ and numrow=[0,Naxis2[ */
|
---|
1583 | double FitsImg2DRd::Read(LONGLONG numcol, LONGLONG numrow)
|
---|
1584 | {
|
---|
1585 | int sta=0;
|
---|
1586 | if(numcol<0 || numrow<0 || numcol>=Naxis[0] || numrow>=Naxis[1])
|
---|
1587 | throw
|
---|
1588 | NotAvailableOperation("FitsImg2DRd::Read(col,row): bad col/row number\n");
|
---|
1589 |
|
---|
1590 | LONGLONG deb = numrow*Naxis[0] + numcol + 1;
|
---|
1591 | double val = 0.;
|
---|
1592 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta);
|
---|
1593 |
|
---|
1594 | if(sta) {
|
---|
1595 | FitsOpenFile::printerror(sta);
|
---|
1596 | throw
|
---|
1597 | NotAvailableOperation("FitsImg2DRd::Read(col,num): Error Reading Fits file\n");
|
---|
1598 | }
|
---|
1599 |
|
---|
1600 | return val;
|
---|
1601 | }
|
---|
1602 |
|
---|
1603 | ///////////////////////////////////////////////////////////////////
|
---|
1604 | ///////////////////////////////////////////////////////////////////
|
---|
1605 | ///////////////////////////////////////////////////////////////////
|
---|
1606 | ///////////////////////////////////////////////////////////////////
|
---|
1607 |
|
---|
1608 | //! Class for reading a 2D image from a FITS file
|
---|
1609 |
|
---|
1610 | /*!
|
---|
1611 | \class SOPHYA::FitsImg2DRead
|
---|
1612 | \ingroup FitsIOServer
|
---|
1613 | Class for reading a 2D image from a FITS file
|
---|
1614 | */
|
---|
1615 |
|
---|
1616 | //////////////////////////////////////////////////////////////
|
---|
1617 | /*!
|
---|
1618 | Constructor.
|
---|
1619 | \param fname : name of the FITS file
|
---|
1620 | \param ihdu : number of the HDU where the image is.
|
---|
1621 | \param lp : debug level
|
---|
1622 | \verbatim
|
---|
1623 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1624 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1625 | \endverbatim
|
---|
1626 | \warning ihdu = [1,nhdu]
|
---|
1627 | */
|
---|
1628 | FitsImg2DRead::FitsImg2DRead(string fname,int ihdu,int lp)
|
---|
1629 | : FitsImg2DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
1630 | {
|
---|
1631 | }
|
---|
1632 |
|
---|
1633 | /*! Constructor. see below */
|
---|
1634 | FitsImg2DRead::FitsImg2DRead(const char * cfname,int ihdu,int lp)
|
---|
1635 | : FitsImg2DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
1636 | {
|
---|
1637 | }
|
---|
1638 |
|
---|
1639 | /*! Constructor by default */
|
---|
1640 | FitsImg2DRead::FitsImg2DRead()
|
---|
1641 | : FitsImg2DRd()
|
---|
1642 | {
|
---|
1643 | }
|
---|
1644 |
|
---|
1645 | /*! Constructor by copy */
|
---|
1646 | FitsImg2DRead::FitsImg2DRead(FitsImg2DRead& fimg)
|
---|
1647 | {
|
---|
1648 | // --- ATTENTION ---
|
---|
1649 | // FitsImg2DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
1650 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
|
---|
1651 | Init(fof,fimg.HDU(),fimg.DbgLevel);
|
---|
1652 | }
|
---|
1653 |
|
---|
1654 | /*! Destructor. */
|
---|
1655 | FitsImg2DRead::~FitsImg2DRead()
|
---|
1656 | {
|
---|
1657 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
1658 | if(FitsOF!=NULL) delete FitsOF;
|
---|
1659 | }
|
---|
1660 |
|
---|
1661 |
|
---|
1662 |
|
---|
1663 | ///////////////////////////////////////////////////////////////////
|
---|
1664 | ///////////////////////////////////////////////////////////////////
|
---|
1665 | ///////////////////////////////////////////////////////////////////
|
---|
1666 | ///////////////////////////////////////////////////////////////////
|
---|
1667 |
|
---|
1668 | //! Class for reading a 3D image from a FITS file
|
---|
1669 |
|
---|
1670 | /*!
|
---|
1671 | \class SOPHYA::FitsImg3DRd
|
---|
1672 | \ingroup FitsIOServer
|
---|
1673 | Class for reading a 3D image from a FITS file
|
---|
1674 | */
|
---|
1675 |
|
---|
1676 | //////////////////////////////////////////////////////////////
|
---|
1677 | /*!
|
---|
1678 | Constructor.
|
---|
1679 | \param fof : Pointer to the Class for opening the FITS file
|
---|
1680 | \param ihdu : number of the HDU where the 3D image is.
|
---|
1681 | \param lp : debug level
|
---|
1682 | \verbatim
|
---|
1683 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1684 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1685 | \endverbatim
|
---|
1686 | \warning ihdu = [1,nhdu]
|
---|
1687 | */
|
---|
1688 | FitsImg3DRd::FitsImg3DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1689 | {
|
---|
1690 | Init(fof,ihdu,lp);
|
---|
1691 | }
|
---|
1692 |
|
---|
1693 | /*! Constructor by copy */
|
---|
1694 | FitsImg3DRd::FitsImg3DRd(FitsImg3DRd& fbt)
|
---|
1695 | {
|
---|
1696 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
1697 | }
|
---|
1698 |
|
---|
1699 | /*! Constructor by default */
|
---|
1700 | FitsImg3DRd::FitsImg3DRd()
|
---|
1701 | {
|
---|
1702 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1703 | SetNulVal(); SetDebug(0);
|
---|
1704 | FitsOF = NULL;
|
---|
1705 | }
|
---|
1706 |
|
---|
1707 | /*! Init routine called by the constructor */
|
---|
1708 | void FitsImg3DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1709 | {
|
---|
1710 | // Initialisation des Parametres Generaux
|
---|
1711 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1712 | SetNulVal(); SetDebug(lp);
|
---|
1713 | FitsOF = NULL;
|
---|
1714 |
|
---|
1715 | // Caracteristiques du FitsOpenFile
|
---|
1716 | FitsOF = fof;
|
---|
1717 | if(FitsOF==NULL)
|
---|
1718 | throw NullPtrError("FitsImg3DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
1719 |
|
---|
1720 | if(GetFitsPtr()==NULL)
|
---|
1721 | throw NullPtrError("FitsImg3DRd::Init: FitsPtr pointer is NULL\n");
|
---|
1722 |
|
---|
1723 | int sta = 0;
|
---|
1724 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1725 |
|
---|
1726 | // Get HDU 3D image
|
---|
1727 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
1728 | if(FitsOF->GetPosStatus()==false) {
|
---|
1729 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
1730 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
1731 | } else {
|
---|
1732 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1733 | if(rc!=ihdu)
|
---|
1734 | throw RangeCheckError("FitsImg3DRd::Init: Error moving to requested HDU\n");
|
---|
1735 | }
|
---|
1736 | } else { // Fits file has already been positionned
|
---|
1737 | if(ihdu>0 && ihdu!=HDU())
|
---|
1738 | throw RangeCheckError("FitsImg3DRd::Init: file already posit. at another HDU\n");
|
---|
1739 | }
|
---|
1740 |
|
---|
1741 | // Check HDUType and set position status to TRUE
|
---|
1742 | if(HDUType()!=IMAGE_HDU)
|
---|
1743 | throw TypeMismatchExc("FitsImg3DRd::Init: HDU not IMAGE_HDU\n");
|
---|
1744 | FitsOF->SetPosStatus(true);
|
---|
1745 |
|
---|
1746 | // Get NAXIS 1, 2 et 3
|
---|
1747 | int nfound=0;
|
---|
1748 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h
|
---|
1749 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,3,Naxis,&nfound,&sta)) {
|
---|
1750 | FitsOpenFile::printerror(sta);
|
---|
1751 | throw RangeCheckError("FitsImg3DRd::Init: Error reading NAXIS cards\n");
|
---|
1752 | }
|
---|
1753 | if(DbgLevel>1)
|
---|
1754 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
1755 | <<Naxis[1]<<" NAXIS3="<<Naxis[2]<<" (nfound="<<nfound<<")"<<endl;
|
---|
1756 | if(nfound!=3 || Naxis[0]<=0 || Naxis[1]<=0 || Naxis[2]<=0)
|
---|
1757 | throw NotAvailableOperation("FitsImg3DRd::Init: bad Naxis[0-2] value\n");
|
---|
1758 |
|
---|
1759 | }
|
---|
1760 |
|
---|
1761 | /*! Destructor. */
|
---|
1762 | FitsImg3DRd::~FitsImg3DRd()
|
---|
1763 | {
|
---|
1764 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1765 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1766 | }
|
---|
1767 |
|
---|
1768 | //////////////////////////////////////////////////////////////
|
---|
1769 | /*!
|
---|
1770 | Read a fitsheader key into double
|
---|
1771 | \param keyname : name of the key
|
---|
1772 | \return value into double
|
---|
1773 | */
|
---|
1774 | double FitsImg3DRd::ReadKey(const char *keyname)
|
---|
1775 | {
|
---|
1776 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1777 | }
|
---|
1778 |
|
---|
1779 | /*!
|
---|
1780 | Read a fitsheader key into long
|
---|
1781 | \param keyname : name of the key
|
---|
1782 | \return value into long
|
---|
1783 | */
|
---|
1784 | long FitsImg3DRd::ReadKeyL(const char *keyname)
|
---|
1785 | {
|
---|
1786 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1787 | }
|
---|
1788 |
|
---|
1789 | /*!
|
---|
1790 | Read a fitsheader key into long long
|
---|
1791 | \param keyname : name of the key
|
---|
1792 | \return value into long long
|
---|
1793 | */
|
---|
1794 | LONGLONG FitsImg3DRd::ReadKeyLL(const char *keyname)
|
---|
1795 | {
|
---|
1796 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1797 | }
|
---|
1798 |
|
---|
1799 | /*!
|
---|
1800 | Read a fitsheader key into string
|
---|
1801 | \param keyname : name of the key
|
---|
1802 | \return value into string
|
---|
1803 | */
|
---|
1804 | string FitsImg3DRd::ReadKeyS(const char *keyname)
|
---|
1805 | {
|
---|
1806 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1807 | }
|
---|
1808 |
|
---|
1809 | //////////////////////////////////////////////////////////////
|
---|
1810 | /* REMARQUE:
|
---|
1811 | * Dans TArray A(naxis1,naxis2,naxis3);
|
---|
1812 | * A(i,j,k) -> i varie le plus vite et k le moins vite
|
---|
1813 | */
|
---|
1814 | /*!
|
---|
1815 | Read 3D image into a TArray<uint_2>
|
---|
1816 | */
|
---|
1817 | LONGLONG FitsImg3DRd::Read(TArray<uint_2>& data)
|
---|
1818 | {
|
---|
1819 | int sta=0;
|
---|
1820 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
1821 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1822 |
|
---|
1823 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1824 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1825 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1826 | if(sta) {
|
---|
1827 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1828 | throw
|
---|
1829 | NotAvailableOperation("FitsImg3DRd::Read(TArray<uint_2>): Error Reading Fits file\n");
|
---|
1830 | }
|
---|
1831 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1832 | }
|
---|
1833 |
|
---|
1834 | delete [] arr;
|
---|
1835 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1836 | }
|
---|
1837 |
|
---|
1838 | /*! Read 3D image into a TArray<int_4> */
|
---|
1839 | LONGLONG FitsImg3DRd::Read(TArray<int_4>& data)
|
---|
1840 | {
|
---|
1841 | int sta=0;
|
---|
1842 | int_4* arr = new int_4[Naxis[0]];
|
---|
1843 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1844 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
1845 |
|
---|
1846 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1847 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1848 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1849 | if(sta) {
|
---|
1850 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1851 | throw
|
---|
1852 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_4>): Error Reading Fits file\n");
|
---|
1853 | }
|
---|
1854 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1855 | }
|
---|
1856 |
|
---|
1857 | delete [] arr;
|
---|
1858 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1859 | }
|
---|
1860 |
|
---|
1861 | /*! Read 3D image into a TArray<int_8> */
|
---|
1862 | LONGLONG FitsImg3DRd::Read(TArray<int_8>& data)
|
---|
1863 | {
|
---|
1864 | int sta=0;
|
---|
1865 | int_8* arr = new int_8[Naxis[0]];
|
---|
1866 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1867 |
|
---|
1868 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1869 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1870 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1871 | if(sta) {
|
---|
1872 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1873 | throw
|
---|
1874 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_8>): Error Reading Fits file\n");
|
---|
1875 | }
|
---|
1876 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1877 | }
|
---|
1878 |
|
---|
1879 | delete [] arr;
|
---|
1880 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1881 | }
|
---|
1882 |
|
---|
1883 | /*! Read 3D image into a TArray<float> */
|
---|
1884 | LONGLONG FitsImg3DRd::Read(TArray<float>& data)
|
---|
1885 | {
|
---|
1886 | int sta=0;
|
---|
1887 | float* arr = new float[Naxis[0]];
|
---|
1888 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1889 |
|
---|
1890 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1891 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1892 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1893 | if(sta) {
|
---|
1894 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1895 | throw
|
---|
1896 | NotAvailableOperation("FitsImg3DRd::Read(TArray<float>): Error Reading Fits file\n");
|
---|
1897 | }
|
---|
1898 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1899 | }
|
---|
1900 |
|
---|
1901 | delete [] arr;
|
---|
1902 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1903 | }
|
---|
1904 |
|
---|
1905 | /*! Read 3D image into a TArray<double> */
|
---|
1906 | LONGLONG FitsImg3DRd::Read(TArray<double>& data)
|
---|
1907 | {
|
---|
1908 | int sta=0;
|
---|
1909 | double* arr = new double[Naxis[0]];
|
---|
1910 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1911 |
|
---|
1912 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1913 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1914 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1915 | if(sta) {
|
---|
1916 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1917 | throw
|
---|
1918 | NotAvailableOperation("FitsImg3DRd::Read(TArray<double>): Error Reading Fits file\n");
|
---|
1919 | }
|
---|
1920 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1921 | }
|
---|
1922 |
|
---|
1923 | delete [] arr;
|
---|
1924 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1925 | }
|
---|
1926 |
|
---|
1927 | /*! Read 3D image pixel i,j,k with i=[0,Naxis1[ , j=[0,Naxis2[ , k=[0,Naxis3[ */
|
---|
1928 | double FitsImg3DRd::Read(LONGLONG i, LONGLONG j, LONGLONG k)
|
---|
1929 | {
|
---|
1930 | int sta=0;
|
---|
1931 | if(i<0 || j<0 || k<0 || i>=Naxis[0] || j>=Naxis[1] || k>=Naxis[2])
|
---|
1932 | throw
|
---|
1933 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): bad i/j/k number\n");
|
---|
1934 |
|
---|
1935 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+i+1;
|
---|
1936 | double val = 0.;
|
---|
1937 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta);
|
---|
1938 |
|
---|
1939 | if(sta) {
|
---|
1940 | FitsOpenFile::printerror(sta);
|
---|
1941 | throw
|
---|
1942 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): Error Reading Fits file\n");
|
---|
1943 | }
|
---|
1944 |
|
---|
1945 | return val;
|
---|
1946 | }
|
---|
1947 |
|
---|
1948 | ///////////////////////////////////////////////////////////////////
|
---|
1949 | ///////////////////////////////////////////////////////////////////
|
---|
1950 | ///////////////////////////////////////////////////////////////////
|
---|
1951 | ///////////////////////////////////////////////////////////////////
|
---|
1952 |
|
---|
1953 | //! Class for reading a 3D image from a FITS file
|
---|
1954 |
|
---|
1955 | /*!
|
---|
1956 | \class SOPHYA::FitsImg3DRead
|
---|
1957 | \ingroup FitsIOServer
|
---|
1958 | Class for reading a 3D image from a FITS file
|
---|
1959 | */
|
---|
1960 |
|
---|
1961 | //////////////////////////////////////////////////////////////
|
---|
1962 | /*!
|
---|
1963 | Constructor.
|
---|
1964 | \param fname : name of the FITS file
|
---|
1965 | \param ihdu : number of the HDU where the 3D image is.
|
---|
1966 | \param lp : debug level
|
---|
1967 | \verbatim
|
---|
1968 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1969 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1970 | \endverbatim
|
---|
1971 | \warning ihdu = [1,nhdu]
|
---|
1972 | */
|
---|
1973 | FitsImg3DRead::FitsImg3DRead(string fname,int ihdu,int lp)
|
---|
1974 | : FitsImg3DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
1975 | {
|
---|
1976 | }
|
---|
1977 |
|
---|
1978 | /*! Constructor. see below */
|
---|
1979 | FitsImg3DRead::FitsImg3DRead(const char * cfname,int ihdu,int lp)
|
---|
1980 | : FitsImg3DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
1981 | {
|
---|
1982 | }
|
---|
1983 |
|
---|
1984 | /*! Constructor by default */
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1985 | FitsImg3DRead::FitsImg3DRead()
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1986 | : FitsImg3DRd()
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1987 | {
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1988 | }
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1989 |
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1990 | /*! Constructor by copy */
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1991 | FitsImg3DRead::FitsImg3DRead(FitsImg3DRead& fimg)
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1992 | {
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1993 | // --- ATTENTION ---
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1994 | // FitsImg3DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
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1995 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
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1996 | Init(fof,fimg.HDU(),fimg.DbgLevel);
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1997 | }
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1998 |
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1999 | /*! Destructor. */
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2000 | FitsImg3DRead::~FitsImg3DRead()
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2001 | {
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2002 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
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2003 | if(FitsOF!=NULL) delete FitsOF;
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2004 | }
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