1 | /* Lecteur de colonne de table Fits (binaire ou ASCII) avec buffer */
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2 | #include "sopnamsp.h"
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3 | #include "machdefs.h"
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4 | #include <stdlib.h>
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5 | #include <stdio.h>
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6 | #include "pexceptions.h"
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7 | #include "fabtcolread.h"
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8 |
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9 | ///////////////////////////////////////////////////////////////////
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10 | ///////////////////////////////////////////////////////////////////
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11 | ///////////////////////////////////////////////////////////////////
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12 | ///////////////////////////////////////////////////////////////////
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13 |
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14 | //! Class for opening a FITS file for reading
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15 |
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16 | /*!
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17 | \class SOPHYA::FitsOpenFile
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18 | \ingroup FitsIOServer
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19 | Class for opening a FITS file for reading
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20 | */
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21 |
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22 | /*!
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23 | Constructor.
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24 | \param fname : FITS file name to be opened for reading
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25 | */
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26 | FitsOpenFile::FitsOpenFile(string fname)
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27 | {
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28 | Init(fname.c_str());
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29 | }
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30 |
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31 | /*!
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32 | Constructor.
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33 | \param cfname : FITS file name to be opened for reading
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34 | */
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35 | FitsOpenFile::FitsOpenFile(const char *cfname)
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36 | {
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37 | Init(cfname);
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38 | }
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39 |
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40 | /*!
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41 | Constructor by default.
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42 | */
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43 | FitsOpenFile::FitsOpenFile()
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44 | {
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45 | FitsFN = "";
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46 | NHdu = IHdu = HduType = 0;
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47 | HasBeenPos = false;
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48 | FitsPtr = NULL;
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49 | }
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50 |
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51 | /*!
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52 | Constructor by copy.
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53 | */
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54 | FitsOpenFile::FitsOpenFile(FitsOpenFile& fof)
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55 | {
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56 | Init(fof.FileName().c_str());
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57 | }
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58 |
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59 | /*!
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60 | Destructor.
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61 | */
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62 | FitsOpenFile::~FitsOpenFile()
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63 | {
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64 | Delete();
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65 | FitsFN = "";
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66 | NHdu = IHdu = HduType = 0;
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67 | HasBeenPos = false;
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68 | }
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69 |
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70 | /*!
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71 | Delete routine called by the destructor.
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72 | */
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73 | void FitsOpenFile::Delete(void)
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74 | {
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75 | if(FitsPtr != NULL) {
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76 | int sta = 0;
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77 | if(fits_close_file(FitsPtr,&sta)) printerror(sta);
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78 | FitsPtr = NULL;
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79 | }
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80 | }
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81 |
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82 | /*! Init routine called by the constructor */
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83 | void FitsOpenFile::Init(const char* fname)
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84 | {
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85 | // Parametres Generaux
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86 | FitsFN = fname;
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87 | NHdu = IHdu = HduType = 0;
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88 | HasBeenPos = false;
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89 | FitsPtr = NULL;
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90 |
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91 | // Ouverture du fichier
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92 | if(FitsFN.size() <= 0 )
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93 | throw ParmError("FitsOpenFile::Init: Fits file name error\n");
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94 |
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95 | int sta = 0;
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96 | if(fits_open_file(&FitsPtr,FitsFN.c_str(),READONLY,&sta)) {
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97 | printerror(sta);
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98 | FitsPtr = NULL;
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99 | throw NullPtrError("FitsOpenFile::Init: Error opening Fits file\n");
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100 | }
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101 |
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102 | // Get number of hdu
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103 | if(fits_get_num_hdus(FitsPtr,&NHdu,&sta)) {
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104 | printerror(sta);
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105 | NHdu = 0;
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106 | Delete();
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107 | throw NotAvailableOperation("FitsOpenFile::Init: Error getting NHdu\n");
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108 | }
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109 | if(NHdu<=0) {
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110 | Delete();
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111 | throw SzMismatchError("FitsOpenFile::Init: Bad NHdu\n");
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112 | }
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113 |
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114 | MoveToHDU(1);
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115 | }
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116 |
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117 | /*! Move to an HDU
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118 | \param ihdu: hdu number to move
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119 | \warning ihdu = [1,nhdu]
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120 | \return 0 if positionning failed, ihdu if success
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121 | */
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122 | int FitsOpenFile::MoveToHDU(int ihdu)
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123 | {
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124 | if(FitsPtr==NULL)
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125 | throw NullPtrError("FitsOpenFile::MoveToHDU: no fits file open FitsPtr==NULL\n");
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126 | int ihdusave = IHdu;
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127 | if(ihdu<=0) ihdu=1; if(ihdu>NHdu) ihdu=NHdu;
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128 | int sta=0;
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129 | if(fits_movabs_hdu(FitsPtr,ihdu,&HduType,&sta)) {
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130 | printerror(sta);
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131 | // On se repositionne ou on etait
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132 | fits_movabs_hdu(FitsPtr,ihdusave,&HduType,&sta);
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133 | IHdu = ihdusave;
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134 | } else IHdu = ihdu;
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135 | return IHdu;
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136 | }
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137 |
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138 | /*! Move to the first HDU of a certain type
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139 | \param hdutype: type of the hdu
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140 | \param hdudeb: start at that hdu
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141 | \return the type of HDU the file is positionned
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142 | */
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143 | int FitsOpenFile::MoveToFirst(int hdutype,int ihdudeb)
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144 | {
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145 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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146 | int ihdusave = IHdu;
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147 | for(int ihdu=ihdudeb;ihdu<=NHdu;ihdu++) {
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148 | MoveToHDU(ihdu);
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149 | if(HduType==hdutype) break;
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150 | }
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151 | // Si echec, on se repositionne ou on etait
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152 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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153 | return HduType;
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154 | }
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155 |
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156 | /*! Move to the last HDU of a certain type
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157 | \param hdutype: type of the hdu
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158 | \param hdudeb: stop at that hdu
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159 | \return the type of HDU the file is positionned
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160 | */
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161 | int FitsOpenFile::MoveToLast(int hdutype,int ihdudeb)
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162 | {
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163 | if(ihdudeb<=0) ihdudeb=1; if(ihdudeb>NHdu) ihdudeb=NHdu;
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164 | int ihdusave = IHdu;
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165 | for(int ihdu=NHdu;ihdu>=ihdudeb;ihdu--) {
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166 | MoveToHDU(ihdu);
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167 | if(HduType==hdutype) break;
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168 | }
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169 | // Si echec, on se repositionne ou on etait
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170 | if(HduType!=hdutype) MoveToHDU(ihdusave);
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171 | return HduType;
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172 | }
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173 |
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174 | /*! Print */
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175 | void FitsOpenFile::Print(void)
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176 | {
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177 | cout<<"FitsOpenFile::Print: "<<FitsFN
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178 | <<" hdu="<<IHdu<<"/"<<NHdu<<" type="<<HduType
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179 | <<" hasbeenpos="<<HasBeenPos<<endl;
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180 | }
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181 |
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182 | //////////////////////////////////////////////////////////////
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183 | //// Methodes statiques
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184 | //////////////////////////////////////////////////////////////
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185 | /*!
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186 | Read a fitsheader key into double
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187 | \param fitsptr : cfitio pointer to Fits file
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188 | \param keyname : name of the key
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189 | \return value into double
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190 | */
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191 | double FitsOpenFile::ReadKey(fitsfile *fitsptr,const char *keyname)
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192 | {
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193 | if(keyname==NULL || fitsptr==NULL) return 0.;
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194 | int sta=0; double val=0.;
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195 | if(fits_read_key(fitsptr,TDOUBLE,keyname,&val,NULL,&sta))
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196 | printerror(sta);
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197 | return val;
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198 | }
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199 |
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200 | /*!
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201 | Read a fitsheader key into long
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202 | \param fitsptr : cfitio pointer to Fits file
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203 | \param keyname : name of the key
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204 | \return value into long
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205 | */
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206 | long FitsOpenFile::ReadKeyL(fitsfile *fitsptr,const char *keyname)
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207 | {
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208 | if(keyname==NULL || fitsptr==NULL) return 0;
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209 | int sta=0; long val=0;
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210 | if(fits_read_key(fitsptr,TLONG,keyname,&val,NULL,&sta))
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211 | printerror(sta);
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212 | return val;
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213 | }
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214 |
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215 | /*!
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216 | Read a fitsheader key into long
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217 | \param fitsptr : cfitio pointer to Fits file
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218 | \param keyname : name of the key
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219 | \return value into long long
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220 | */
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221 | LONGLONG FitsOpenFile::ReadKeyLL(fitsfile *fitsptr,const char *keyname)
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222 | {
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223 | if(keyname==NULL || fitsptr==NULL) return 0;
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224 | int sta=0; LONGLONG val=0;
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225 | if(fits_read_key(fitsptr,TLONGLONG,keyname,&val,NULL,&sta))
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226 | printerror(sta);
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227 | return val;
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228 | }
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229 |
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230 | /*!
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231 | Read a fitsheader key into string
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232 | \param fitsptr : cfitio pointer to Fits file
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233 | \param keyname : name of the key
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234 | \return value into string
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235 | */
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236 | string FitsOpenFile::ReadKeyS(fitsfile *fitsptr,const char *keyname)
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237 | {
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238 | if(keyname==NULL || fitsptr==NULL) return (string)"";
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239 | int sta=0; char val[FLEN_VALUE];
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240 | if(fits_read_key(fitsptr,TSTRING,keyname,val,NULL,&sta))
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241 | printerror(sta);
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242 | string sval = val;
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243 | return sval;
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244 | }
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245 |
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246 | /*!
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247 | CFitsIO error printing routine
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248 | \param sta : cfitio error return code
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249 | */
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250 | void FitsOpenFile::printerror(int sta)
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251 | {
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252 | int stat = sta;
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253 | fits_report_error(stdout,stat);
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254 | fflush(stdout);
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255 | return;
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256 | }
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257 |
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258 | ///////////////////////////////////////////////////////////////////
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259 | ///////////////////////////////////////////////////////////////////
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260 | ///////////////////////////////////////////////////////////////////
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261 | ///////////////////////////////////////////////////////////////////
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262 |
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263 | ///////////////////////////////////////////////////////////////////
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264 | //! Class for reading a column in a FITS ASCII or BINARY table
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265 |
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266 | /*!
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267 | \class SOPHYA::FitsABTColRd
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268 | \ingroup FitsIOServer
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269 | Class for reading a column in a FITS ASCII or BINARY table.
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270 | You can read many columns of the same FITS table by instanciating
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271 | many FitsABTColRd on the same FitsOpenFile. So, the FITS file is
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272 | opened only once. Of course the various FitsABTColRd must read
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273 | the same FITS file HDU.
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274 | \verbatim
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275 | -- Exemple:
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276 | // Open the fits file with FitsOpenFile
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277 | FitsOpenFile fof = new FitsOpenFile("myfits.fits");
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278 | // Select the column to be read
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279 | FitsABTColRd fbt(fof,"BoloMuv_28",0,1000,1,3);
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280 | FitsABTColRd fbt2(fof,"BoloMuv_29",0,1000,1,3);
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281 | fbt.SetDebug(3);
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282 | fbt.Print(3);
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283 | // Read element by element
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284 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) {
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285 | double x = fbt.Read(i);
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286 | double y = fbt2.Read(i);
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287 | if(i%lpmod==0) cout<<i<<": "<<x<<", "<<y<<endl;
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288 | }
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289 | // Read into a vector
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290 | TVector<double> data;
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291 | LONGLONG n = fbt.Read(32,50,data);
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292 | cout<<"Number of values read: "<<n<<endl;
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293 | data.ReSize(100);
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294 | n = fbt.Read(10,-1,data);
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295 | cout<<"Number of values read: "<<n<<endl;
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296 | TVector<double> data2;
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297 | fbt2.Read(32,50,data);
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298 | // Close the fits file
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299 | delete fof;
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300 | \endverbatim
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301 | */
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302 |
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303 | //////////////////////////////////////////////////////////////
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304 | /*!
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305 | Constructor.
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306 | \param fof : Pointer to the Class for opening the FITS file
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307 | \param collabel : label of the column to be read
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308 | \param ihdu : number of the HDU where the column is.
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309 | \param blen : read buffer length
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310 | \param bsens : buffer reading direction
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311 | \param lp : debug level
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312 | \verbatim
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313 | - if ihdu<=0 first BINARY or ASCII table is taken
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314 | - if ihdu>nhdu ihdu is set to nhdu
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315 | - bsens>0 read forward
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316 | bsens<0 read backward
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317 | bsens==0 read centered
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318 | \endverbatim
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319 | \warning ihdu = [1,nhdu]
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320 | */
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321 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,string collabel
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322 | ,int ihdu,long blen,long bsens,int lp)
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323 | {
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324 | Init(fof,collabel.c_str(),-1,ihdu,blen,bsens,lp);
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325 | }
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326 |
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327 | /*!
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328 | Constructor.
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329 | Same as before but the column is identified by its column number
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330 | \param colnum : number of the column to be read
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331 | \warning col = [0,ncol[
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332 | */
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333 | FitsABTColRd::FitsABTColRd(FitsOpenFile* fof,int colnum
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334 | ,int ihdu,long blen,long bsens,int lp)
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335 | {
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336 | Init(fof,"",colnum,ihdu,blen,bsens,lp);
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337 | }
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338 |
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339 | /*! Constructor by copy */
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340 | FitsABTColRd::FitsABTColRd(FitsABTColRd& fbt)
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341 | {
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342 | Init(fbt.GetFitsOpenFile(),fbt.GetColLabel().c_str()
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343 | ,fbt.GetColNum(),fbt.HDU()
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344 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
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345 | }
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346 |
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347 | /*! Constructor by default */
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348 | FitsABTColRd::FitsABTColRd()
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349 | {
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350 | ColLabel = ""; ColTUnit = ""; ColTForm = "";
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351 | ColNum = -1; ColTypeCode = 0; ColRepeat=0; ColDispWidth=0;
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352 | StrBuff = NULL;
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353 | NBcol = 0; NBline = 0;
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354 | SetNulVal(); SetDebug(0);
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355 | NFitsRead = 0;
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356 | FitsOF = NULL;
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357 | LineDeb = LineFin = -1;
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358 | Buffer = NULL;
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359 | }
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360 |
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361 | /*! Init routine called by the constructor */
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362 | void FitsABTColRd::Init(FitsOpenFile* fof,const char* collabel,int colnum
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363 | ,int ihdu,long blen,long bsens,int lp)
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364 | {
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365 | // Initialisation des Parametres Generaux
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366 | ColLabel=collabel; ColTUnit=""; ColTForm="";
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367 | ColNum=colnum; ColTypeCode=0; ColRepeat=0; ColDispWidth=0;
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368 | StrBuff = NULL;
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369 | NBcol = 0; NBline = 0;
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370 | SetNulVal(); SetDebug(lp);
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371 | NFitsRead = 0;
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372 | FitsOF = NULL;
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373 | LineDeb = LineFin = -1;
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374 | Buffer = NULL;
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375 |
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376 | // Caracteristiques du FitsOpenFile
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377 | FitsOF = fof;
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378 | if(FitsOF==NULL)
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379 | throw NullPtrError("FitsABTColRd::Init: FitsOpenFile pointer is NULL\n");
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380 |
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381 | if(GetFitsPtr()==NULL)
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382 | throw NullPtrError("FitsABTColRd::Init: FitsPtr pointer is NULL\n");
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383 |
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384 | int sta = 0;
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385 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
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386 |
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387 | // Get HDU for bin/ascii table
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388 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU,
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389 | // une classe utilisant ce fichier doit le positionner sur un HDU.
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390 | // Par contre, si une autre classe utilise ce meme FitsOpenFile,
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391 | // elle ne peut le positionner que sur ce meme HDU !
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392 | if(FitsOF->GetPosStatus()==false) {
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393 | if(ihdu==0) { // find the first BINARY then the first ASCII
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394 | int rc = FitsOF->MoveToFirst(BINARY_TBL);
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395 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL);
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396 | } else {
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397 | int rc = FitsOF->MoveToHDU(ihdu);
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398 | if(rc!=ihdu)
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399 | throw RangeCheckError("FitsABTColRd::Init: Error moving to requested HDU\n");
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400 | }
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401 | } else { // Fits file has already been positionned
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402 | if(ihdu>0 && ihdu!=HDU())
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403 | throw RangeCheckError("FitsABTColRd::Init: file already posit. at another HDU\n");
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404 | }
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405 |
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406 | // Check HDUType and set position status to TRUE
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407 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL)
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408 | throw TypeMismatchExc("FitsABTColRd::Init: HDU not ASCII/BINARY table\n");
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409 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl;
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410 | FitsOF->SetPosStatus(true);
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411 |
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412 | // Get number of columns
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413 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) {
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414 | FitsOpenFile::printerror(sta);
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415 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of columns\n");
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416 | }
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417 | if(DbgLevel>1) cout<<"...Init NBcol="<<NBcol<<endl;
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418 | if(NBcol<1)
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419 | throw RangeCheckError("FitsABTColRd::Init: Bad number of colums\n");
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420 |
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421 | // Get number of rows
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422 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) {
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423 | FitsOpenFile::printerror(sta);
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424 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting number of rows\n");
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425 | }
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426 | if(DbgLevel>1) cout<<"...Init NBline="<<NBline<<endl;
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427 | if(NBline<1)
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428 | throw RangeCheckError("FitsABTColRd::Init: Bad number of rows\n");
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429 |
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430 | // Get column number
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431 | char labelcol[128];
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432 | if(ColLabel.size() > 0) {
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433 | strcpy(labelcol,ColLabel.c_str());
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434 | if(fits_get_colnum(GetFitsPtr(),CASESEN,labelcol,&ColNum,&sta)) {
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435 | FitsOpenFile::printerror(sta);
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436 | throw NotAvailableOperation("FitsABTColRd::Init: Error getting column number\n");
|
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437 | }
|
---|
438 | ColNum--; // Convention [0,ncol[
|
---|
439 | }
|
---|
440 | if(DbgLevel>1) cout<<"...Init ColNum="<<ColNum<<endl;
|
---|
441 | if(ColNum<0 || ColNum>=NBcol)
|
---|
442 | throw RangeCheckError("FitsABTColRd::Init: Bad column number\n");
|
---|
443 |
|
---|
444 | // Get column type
|
---|
445 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode,NULL,NULL,&sta)) {
|
---|
446 | FitsOpenFile::printerror(sta);
|
---|
447 | throw ParmError("FitsABTColRd::Init: Error getting column type\n");
|
---|
448 | }
|
---|
449 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode<<endl;
|
---|
450 | if(ColTypeCode<0 )
|
---|
451 | throw ParmError("FitsABTColRd::Init: Selected column type decoding not implemented\n");
|
---|
452 |
|
---|
453 | // Get column name back, tunit, tform
|
---|
454 | char tunit[64], tform[64], tdisp[64];
|
---|
455 | LONGLONG repeat=0; double tscale=1., tzero=0.;
|
---|
456 | int rc=0;
|
---|
457 | if(HDUType()==BINARY_TBL) {
|
---|
458 | rc = fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform
|
---|
459 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
460 | } else {
|
---|
461 | long repeatlng;
|
---|
462 | rc = fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform
|
---|
463 | ,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
464 | repeat = repeatlng;
|
---|
465 | }
|
---|
466 | if(rc) {
|
---|
467 | FitsOpenFile::printerror(sta);
|
---|
468 | throw RangeCheckError("FitsABTColRd::Init: Error getting the column caracteristics\n");
|
---|
469 | }
|
---|
470 | ColLabel = labelcol;
|
---|
471 | ColTUnit = tunit;
|
---|
472 | ColTForm = tform;
|
---|
473 | ColRepeat = repeat;
|
---|
474 |
|
---|
475 | fits_get_col_display_width(GetFitsPtr(),ColNum+1,&ColDispWidth,&sta);
|
---|
476 |
|
---|
477 | // Set the buffer for reading
|
---|
478 | ChangeBuffer(blen,bsens);
|
---|
479 |
|
---|
480 | if(DbgLevel)
|
---|
481 | cout<<"FitsABTColRd::Init Num="<<ColNum<<" Label="<<ColLabel
|
---|
482 | <<" TypeCode="<<ColTypeCode<<" TUnit="<<ColTUnit<<" TForm="<<ColTForm
|
---|
483 | <<" Repeat="<<ColRepeat<<" DispWidth="<<ColDispWidth<<endl;
|
---|
484 | if(DbgLevel>1)
|
---|
485 | cout<<" (tscale="<<tscale<<",tzero="<<tzero<<",tdisp="<<tdisp<<")"<<endl;
|
---|
486 |
|
---|
487 | }
|
---|
488 |
|
---|
489 | /*! Destructor. */
|
---|
490 | FitsABTColRd::~FitsABTColRd()
|
---|
491 | {
|
---|
492 | Delete();
|
---|
493 | }
|
---|
494 |
|
---|
495 | /*! Delete called by the destructor */
|
---|
496 | void FitsABTColRd::Delete(void)
|
---|
497 | {
|
---|
498 | if(StrBuff!=NULL) {delete [] StrBuff; StrBuff=NULL;}
|
---|
499 | if(Buffer!=NULL) {delete [] Buffer; Buffer=NULL;}
|
---|
500 | LineDeb = LineFin = -1;
|
---|
501 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
502 | }
|
---|
503 |
|
---|
504 | //////////////////////////////////////////////////////////////
|
---|
505 | /*! Change the buffer caracteristiques (see creator) */
|
---|
506 | void FitsABTColRd::ChangeBuffer(long blen,long bsens)
|
---|
507 | {
|
---|
508 | long oldnbuffer = NBuffer;
|
---|
509 |
|
---|
510 | // Compute buffer caracteristics
|
---|
511 | BuffLen = (blen<=0 || ColRepeat!=1)? 1: blen;
|
---|
512 | BuffSens = bsens;
|
---|
513 | NBuffer = BuffLen;
|
---|
514 | if(bsens==0 && NBuffer%2==0) NBuffer++;
|
---|
515 |
|
---|
516 | // De-allocate if necessary
|
---|
517 | if(Buffer!=NULL) {
|
---|
518 | // On des-alloue si pas assez de place
|
---|
519 | // ou si l'ancienne place est beaucoup trop grande (>25%)
|
---|
520 | if(oldnbuffer<NBuffer || (oldnbuffer>NBuffer+long(0.25*NBuffer)) )
|
---|
521 | {delete [] Buffer; Buffer=NULL;}
|
---|
522 | }
|
---|
523 |
|
---|
524 | // Re-allocate
|
---|
525 | if(Buffer==NULL) Buffer = new double[NBuffer];
|
---|
526 |
|
---|
527 | // Tell program that nothing is into buffer
|
---|
528 | LineDeb = LineFin = -1;
|
---|
529 | }
|
---|
530 |
|
---|
531 | //////////////////////////////////////////////////////////////
|
---|
532 | /*!
|
---|
533 | Read a fitsheader key into double
|
---|
534 | \param keyname : name of the key
|
---|
535 | \return value into double
|
---|
536 | */
|
---|
537 | double FitsABTColRd::ReadKey(const char *keyname)
|
---|
538 | {
|
---|
539 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
540 | }
|
---|
541 |
|
---|
542 | /*!
|
---|
543 | Read a fitsheader key into long
|
---|
544 | \param keyname : name of the key
|
---|
545 | \return value into long
|
---|
546 | */
|
---|
547 | long FitsABTColRd::ReadKeyL(const char *keyname)
|
---|
548 | {
|
---|
549 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
550 | }
|
---|
551 |
|
---|
552 | /*!
|
---|
553 | Read a fitsheader key into long long
|
---|
554 | \param keyname : name of the key
|
---|
555 | \return value into long long
|
---|
556 | */
|
---|
557 | LONGLONG FitsABTColRd::ReadKeyLL(const char *keyname)
|
---|
558 | {
|
---|
559 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
560 | }
|
---|
561 |
|
---|
562 | /*!
|
---|
563 | Read a fitsheader key into string
|
---|
564 | \param keyname : name of the key
|
---|
565 | \return value into string
|
---|
566 | */
|
---|
567 | string FitsABTColRd::ReadKeyS(const char *keyname)
|
---|
568 | {
|
---|
569 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
570 | }
|
---|
571 |
|
---|
572 | /////////////////////////////////////////////////
|
---|
573 | /*!
|
---|
574 | Read row "n" element "nfirstel" and return the value into a double
|
---|
575 | \warning be carefull for the range: row = [0,NRows[
|
---|
576 | \return value in double
|
---|
577 | \param n : number of the row to be read.
|
---|
578 | \verbatim
|
---|
579 | usebuffer == true : use read optimisation with bufferisation
|
---|
580 | == false : no optimisation with bufferisation
|
---|
581 | just read one value
|
---|
582 | \endverbatim
|
---|
583 | */
|
---|
584 | double FitsABTColRd::Read(LONGLONG n,long nfirstel,bool usebuffer)
|
---|
585 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline]
|
---|
586 | // Attention: colnum [0,NBcol[ , cfistio veut [1,NBcol]
|
---|
587 | // Attention: nfirstel [0,ColRepeat[ , cfistio veut [1,ColRepeat]
|
---|
588 | {
|
---|
589 | int sta=0;
|
---|
590 | if(n<0 || n>=NBline)
|
---|
591 | throw RangeCheckError("FitsABTColRd::Read try to read outside line range\n");
|
---|
592 | if(nfirstel<0 || nfirstel>=ColRepeat)
|
---|
593 | throw RangeCheckError("FitsABTColRd::Read try to read outside element range: nfirstel>repeat\n");
|
---|
594 |
|
---|
595 | // Pas de bufferisation (ou repeat=1), on lit betement
|
---|
596 | if(NBuffer==1 || !usebuffer || ColRepeat!=1) {
|
---|
597 | NFitsRead++;
|
---|
598 | double val;
|
---|
599 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,nfirstel+1,1,NULL,&val,NULL,&sta);
|
---|
600 | if(sta) {
|
---|
601 | FitsOpenFile::printerror(sta);
|
---|
602 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
603 | }
|
---|
604 | // On ne remplit Buffer[0] que si on a choisit
|
---|
605 | // un mode de lecture non bufferise (n==1) DES LE DEBUT.
|
---|
606 | // Si on a initialement choisit un mode bufferise (avec n>1),
|
---|
607 | // Buffer contient les valeurs chargees auparavent.
|
---|
608 | // Il ne faut pas faire {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
609 | // car on perd l'info de ces valeurs.
|
---|
610 | if(NBuffer==1) {Buffer[0]=val; LineDeb=LineFin=n;}
|
---|
611 | return val;
|
---|
612 | }
|
---|
613 |
|
---|
614 | // Gestion avec bufferisation (uniquement dans le cas repeat=1)
|
---|
615 | if(!Buffer)
|
---|
616 | throw RangeCheckError("FitsABTColRd::Read: Buffer not allocated\n");
|
---|
617 | if(n<LineDeb || n>LineFin) {
|
---|
618 | NFitsRead++;
|
---|
619 | LONGLONG row1,row2,nrow;
|
---|
620 | if(BuffSens>0) { // Cas remplissage forward
|
---|
621 | row1 = n+1;
|
---|
622 | row2 = row1+NBuffer-1; if(row2>NBline) row2 = NBline;
|
---|
623 | } else if(BuffSens<0) { // Cas remplissage backward
|
---|
624 | row2 = n+1;
|
---|
625 | row1 = row2-NBuffer+1; if(row1<1) row1 = 1;
|
---|
626 | } else { // Cas remplissage centre
|
---|
627 | row1 = n+1 - NBuffer/2; if(row1<1) row1 = 1;
|
---|
628 | row2 = n+1 + NBuffer/2; if(row2>NBline) row2 = NBline;
|
---|
629 | }
|
---|
630 | nrow = row2 - row1 + 1;
|
---|
631 | LineDeb = row1-1; LineFin = row2-1;
|
---|
632 | //cout<<"DBG-FitsRead: row1="<<row1<<" row2="<<row2<<" nrow="<<nrow
|
---|
633 | // <<" LineDeb,Fin="<<LineDeb<<","<<LineFin<<endl;
|
---|
634 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,row1,1,nrow,NULL,Buffer,NULL,&sta);
|
---|
635 | if(sta) {
|
---|
636 | FitsOpenFile::printerror(sta);
|
---|
637 | LineDeb = LineFin = -1;
|
---|
638 | throw NotAvailableOperation("FitsABTColRd::Read: Error Reading Fits file\n");
|
---|
639 | }
|
---|
640 | }
|
---|
641 |
|
---|
642 | long ibuf = n-LineDeb;
|
---|
643 | return Buffer[ibuf];
|
---|
644 | }
|
---|
645 |
|
---|
646 | /*!
|
---|
647 | Read row "n" element "nfirstel" and return a complex value
|
---|
648 | */
|
---|
649 | complex<r_8> FitsABTColRd::ReadComplex(LONGLONG n,long nfirstel)
|
---|
650 | {
|
---|
651 | int sta=0;
|
---|
652 | if(n<0 || n>=NBline)
|
---|
653 | throw RangeCheckError("FitsABTColRd::ReadComplex try to read outside line range\n");
|
---|
654 | if(nfirstel<0 || nfirstel>=ColRepeat)
|
---|
655 | throw RangeCheckError("FitsABTColRd::ReadComplex try to read outside element range: nfirstel>repeat\n");
|
---|
656 |
|
---|
657 | r_8 val[2];
|
---|
658 | fits_read_col(GetFitsPtr(),TDBLCOMPLEX,ColNum+1,n+1,nfirstel+1,1,NULL,val,NULL,&sta);
|
---|
659 | if(sta) {
|
---|
660 | FitsOpenFile::printerror(sta);
|
---|
661 | throw NotAvailableOperation("FitsABTColRd::ReadComplex: Error Reading Fits file\n");
|
---|
662 | }
|
---|
663 | return complex<r_8>(val[0],val[1]);
|
---|
664 | }
|
---|
665 |
|
---|
666 | /*!
|
---|
667 | Read row "n" element "nfirstel" and return in string (internal pointer)
|
---|
668 | */
|
---|
669 | char* FitsABTColRd::ReadInStr(LONGLONG n,long nfirstel)
|
---|
670 | {
|
---|
671 | int sta=0;
|
---|
672 | if(n<0 || n>=NBline)
|
---|
673 | throw RangeCheckError("FitsABTColRd::ReadInStr try to read outside line range\n");
|
---|
674 | if(nfirstel<0 || nfirstel>=ColRepeat)
|
---|
675 | throw RangeCheckError("FitsABTColRd::ReadInStr try to read outside element range: nfirstel>repeat\n");
|
---|
676 |
|
---|
677 | if(StrBuff==NULL) StrBuff= new char[ColDispWidth+5];
|
---|
678 | char nullstr[]="";
|
---|
679 |
|
---|
680 | NFitsRead++;
|
---|
681 | fits_read_col(GetFitsPtr(),TSTRING,ColNum+1,n+1,nfirstel+1,1,nullstr,&StrBuff,NULL,&sta);
|
---|
682 | if(sta) {
|
---|
683 | FitsOpenFile::printerror(sta);
|
---|
684 | throw NotAvailableOperation("FitsABTColRd::ReadInStr: Error Reading Fits file\n");
|
---|
685 | }
|
---|
686 |
|
---|
687 | return StrBuff;
|
---|
688 | }
|
---|
689 |
|
---|
690 | /*!
|
---|
691 | Read rows from "n1" to "n2" and return the values into TVector of double
|
---|
692 | \return NREAD the number of values read (n2-n1+1).
|
---|
693 | \warning row = [0,NRows[, the routine read [n1,n2]
|
---|
694 | \verbatim
|
---|
695 | - if n2<0 then read [n1,n2] where "n2=min(n1+vector_size-1,nrows-1)"
|
---|
696 | - Last row read is ALWAYS: "n2 = n1 + NREAD -1"
|
---|
697 | - The TVector is never resized if not necessary
|
---|
698 | -------------------------------------------------------------------------
|
---|
699 | - ex: suppose the column table contains 10 elements: nrows=10, rows=[0,9]
|
---|
700 |
|
---|
701 | TVector<double> V(5);
|
---|
702 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==5 -> return 3
|
---|
703 | bt.Read(3,-1,V) -> read rows=3,4,5,6,7 -> V.Size()==5 -> return 5
|
---|
704 | bt.Read(7,-1,V) -> read rows=7,8,9 -> V.Size()==5 -> return 3
|
---|
705 | bt.Read(2,-1,V) -> read rows=2,3,4,5,6 -> V.Size()==5 -> return 5
|
---|
706 | bt.Read(-1,5,V) -> throw exception
|
---|
707 |
|
---|
708 | TVector<double> V(5);
|
---|
709 | bt.Read(3,99,V) -> read rows=3,4,5,6,7,8,9 -> V.Size()==7 -> return 7
|
---|
710 |
|
---|
711 | TVector<double> V(5);
|
---|
712 | bt.Read(2,8,V) -> read rows=2,3,4,5,6,7,8 -> V.Size()==7 -> return 7
|
---|
713 |
|
---|
714 | TVector<double> V;
|
---|
715 | bt.Read(3,5,V) -> read rows=3,4,5 -> V.Size()==3 -> return 3
|
---|
716 |
|
---|
717 | TVector<double> V;
|
---|
718 | bt.Read(3,-1,V) -> throw exception
|
---|
719 | -------------------------------------------------------------------------
|
---|
720 | \endverbatim
|
---|
721 | */
|
---|
722 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<double>& data)
|
---|
723 | {
|
---|
724 | if(ColRepeat>1)
|
---|
725 | throw RangeCheckError("FitsABTColRd::Read TVector not-implemented for repeat>1 \n");
|
---|
726 | if(n1<0 || n1>=NBline)
|
---|
727 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
728 | if(data.Size()<=0 && n2<n1)
|
---|
729 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
730 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
731 | if(n2>=NBline) n2 = NBline-1;
|
---|
732 |
|
---|
733 | LONGLONG nread = n2-n1+1;
|
---|
734 | if(data.Size()<nread) data.SetSize(nread);
|
---|
735 |
|
---|
736 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
737 | int sta=0;
|
---|
738 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
739 | if(sta) {
|
---|
740 | FitsOpenFile::printerror(sta);
|
---|
741 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<double>: Error Reading Fits file\n");
|
---|
742 | }
|
---|
743 |
|
---|
744 | return nread;
|
---|
745 | }
|
---|
746 |
|
---|
747 | /*! idem before but for TVector of float */
|
---|
748 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<float>& data)
|
---|
749 | {
|
---|
750 | if(ColRepeat>1)
|
---|
751 | throw RangeCheckError("FitsABTColRd::Read TVector not-implemented for repeat>1 \n");
|
---|
752 | if(n1<0 || n1>=NBline)
|
---|
753 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
754 | if(data.Size()<=0 && n2<n1)
|
---|
755 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
756 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
757 | if(n2>=NBline) n2 = NBline-1;
|
---|
758 |
|
---|
759 | LONGLONG nread = n2-n1+1;
|
---|
760 | if(data.Size()<nread) data.SetSize(nread);
|
---|
761 |
|
---|
762 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
763 | int sta=0;
|
---|
764 | fits_read_col(GetFitsPtr(),TFLOAT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
765 | if(sta) {
|
---|
766 | FitsOpenFile::printerror(sta);
|
---|
767 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<float>: Error Reading Fits file\n");
|
---|
768 | }
|
---|
769 |
|
---|
770 | return nread;
|
---|
771 | }
|
---|
772 |
|
---|
773 | /*! idem before but for TVector of unsigned short */
|
---|
774 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<uint_2>& data)
|
---|
775 | {
|
---|
776 | if(ColRepeat>1)
|
---|
777 | throw RangeCheckError("FitsABTColRd::Read TVector not-implemented for repeat>1 \n");
|
---|
778 | if(n1<0 || n1>=NBline)
|
---|
779 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
780 | if(data.Size()<=0 && n2<n1)
|
---|
781 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
782 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
783 | if(n2>=NBline) n2 = NBline-1;
|
---|
784 |
|
---|
785 | LONGLONG nread = n2-n1+1;
|
---|
786 | if(data.Size()<nread) data.SetSize(nread);
|
---|
787 |
|
---|
788 | int sta=0;
|
---|
789 | fits_read_col(GetFitsPtr(),TUSHORT,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
790 | if(sta) {
|
---|
791 | FitsOpenFile::printerror(sta);
|
---|
792 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<uint_2>: Error Reading Fits file\n");
|
---|
793 | }
|
---|
794 |
|
---|
795 | return nread;
|
---|
796 | }
|
---|
797 |
|
---|
798 | /*! idem before but for TVector of int_4 */
|
---|
799 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_4>& data)
|
---|
800 | {
|
---|
801 | if(ColRepeat>1)
|
---|
802 | throw RangeCheckError("FitsABTColRd::Read TVector not-implemented for repeat>1 \n");
|
---|
803 | if(n1<0 || n1>=NBline)
|
---|
804 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
805 | if(data.Size()<=0 && n2<n1)
|
---|
806 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
807 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
808 | if(n2>=NBline) n2 = NBline-1;
|
---|
809 |
|
---|
810 | LONGLONG nread = n2-n1+1;
|
---|
811 | if(data.Size()<nread) data.SetSize(nread);
|
---|
812 |
|
---|
813 | //for(LONGLONG i=n1;i<=n2;i++) data(i-n1) = Read(i);
|
---|
814 | int sta=0;
|
---|
815 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
816 | fits_read_col(GetFitsPtr(),T,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
817 | if(sta) {
|
---|
818 | FitsOpenFile::printerror(sta);
|
---|
819 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_4>: Error Reading Fits file\n");
|
---|
820 | }
|
---|
821 |
|
---|
822 | return nread;
|
---|
823 | }
|
---|
824 |
|
---|
825 | /*! idem before but for TVector of int_8 */
|
---|
826 | LONGLONG FitsABTColRd::Read(LONGLONG n1,LONGLONG n2,TVector<int_8>& data)
|
---|
827 | {
|
---|
828 | #ifdef TLONGLONG
|
---|
829 | if(ColRepeat>1)
|
---|
830 | throw RangeCheckError("FitsABTColRd::Read TVector not-implemented for repeat>1 \n");
|
---|
831 | if(n1<0 || n1>=NBline)
|
---|
832 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 1srt line \n");
|
---|
833 | if(data.Size()<=0 && n2<n1)
|
---|
834 | throw RangeCheckError("FitsABTColRd::Read TVector bad requested 2sd line \n");
|
---|
835 | if(n2<0) n2 = n1 + data.Size()-1;
|
---|
836 | if(n2>=NBline) n2 = NBline-1;
|
---|
837 |
|
---|
838 | LONGLONG nread = n2-n1+1;
|
---|
839 | if(data.Size()<nread) data.SetSize(nread);
|
---|
840 |
|
---|
841 | int sta=0;
|
---|
842 | fits_read_col(GetFitsPtr(),TLONGLONG,ColNum+1,n1+1,1,nread,NULL,data.Data(),NULL,&sta);
|
---|
843 | if(sta) {
|
---|
844 | FitsOpenFile::printerror(sta);
|
---|
845 | throw NotAvailableOperation("FitsABTColRd::Read_TVector<int_8>: Error Reading Fits file\n");
|
---|
846 | }
|
---|
847 |
|
---|
848 | return nread;
|
---|
849 | #else
|
---|
850 | throw PException("FitsABTColRd::Read(..,TVector<int_8>&) Not in that cfitsio version");
|
---|
851 | #endif
|
---|
852 | }
|
---|
853 |
|
---|
854 | /////////////////////////////////////////////////
|
---|
855 | /*!
|
---|
856 | Return the number of the first row where "val1"<=val<="val2" starting at row "rowstart"
|
---|
857 | for element "nfirstel"
|
---|
858 | \verbatim
|
---|
859 | - The search is performed from "rowstart" to the end
|
---|
860 | in ascending order (from "rowstart" to nrows).
|
---|
861 | - Warning: "rowstart<0" means "rowstart==0" (search all the table column)
|
---|
862 | That is the default
|
---|
863 | \endverbatim
|
---|
864 | \return <0 means not found
|
---|
865 | */
|
---|
866 | LONGLONG FitsABTColRd::FirstRow(long nfirstel,double val1,double val2,LONGLONG rowstart)
|
---|
867 | {
|
---|
868 | if(nfirstel<0 || nfirstel>=ColRepeat)
|
---|
869 | throw RangeCheckError("FitsABTColRd::FirstRow try to read outside element range: nfirstel>repeat\n");
|
---|
870 | LONGLONG row = -1;
|
---|
871 | if(NBline==0) return row;
|
---|
872 | // Change buffer for efficiency
|
---|
873 | long bsens=BuffSens; bool bchange=false;
|
---|
874 | if(bsens<=0) {ChangeBuffer(BuffLen,1); bchange=true;}
|
---|
875 | if(rowstart<0) rowstart = 0;
|
---|
876 | if(rowstart>=NBline) rowstart = NBline-1;
|
---|
877 | for(LONGLONG i=rowstart;i<NBline;i++) {
|
---|
878 | double val = Read(i,nfirstel);
|
---|
879 | if(val<val1 || val>val2) continue;
|
---|
880 | row = i;
|
---|
881 | break;
|
---|
882 | }
|
---|
883 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
884 | return row;
|
---|
885 | }
|
---|
886 |
|
---|
887 | /*!
|
---|
888 | Return the number of the last row where val1<=val<=val2 starting at row rowstart
|
---|
889 | for element "nfirstel"
|
---|
890 | \return <0 means not found
|
---|
891 | \verbatim
|
---|
892 | - The search is performed from "rowstart" to the beginning
|
---|
893 | in descending order (from "rowstart" to 0).
|
---|
894 | - Warning: "rowstart<0" means "rowstart==nrows-1" (search all the table column)
|
---|
895 | That is the default
|
---|
896 | \endverbatim
|
---|
897 | */
|
---|
898 | LONGLONG FitsABTColRd::LastRow(long nfirstel,double val1,double val2,LONGLONG rowstart)
|
---|
899 | {
|
---|
900 | if(nfirstel<0 || nfirstel>=ColRepeat)
|
---|
901 | throw RangeCheckError("FitsABTColRd::FirstRow try to read outside element range: nfirstel>repeat\n");
|
---|
902 | LONGLONG row = -1;
|
---|
903 | if(NBline==0) return row;
|
---|
904 | // Change buffer for efficiency
|
---|
905 | long bsens=BuffSens; bool bchange=false;
|
---|
906 | if(bsens>=0) {ChangeBuffer(BuffLen,-1); bchange=true;}
|
---|
907 | if(rowstart<0 || rowstart>=NBline) rowstart = NBline-1;
|
---|
908 | for(LONGLONG i=rowstart;i>=0;i--) {
|
---|
909 | double val = Read(i,nfirstel);
|
---|
910 | if(val<val1 || val>val2) continue;
|
---|
911 | row = i;
|
---|
912 | break;
|
---|
913 | }
|
---|
914 | if(bchange) ChangeBuffer(BuffLen,bsens);
|
---|
915 | return row;
|
---|
916 | }
|
---|
917 |
|
---|
918 | /*! Print on stream os */
|
---|
919 | void FitsABTColRd::Print(ostream& os,int lp) const
|
---|
920 | {
|
---|
921 | os<<"FitsABTColRd:Print ("<<BuffLen<<","<<BuffSens<<","<<NulVal<<")"
|
---|
922 | <<" ncols="<<NBcol<<" nrows="<<NBline;
|
---|
923 | if(lp>0) os<<" NRead="<<NFitsRead;
|
---|
924 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"
|
---|
925 | <<"\n... Label["<<ColNum<<"]="<<ColLabel<<" TypeCode="<<ColTypeCode
|
---|
926 | <<" TUnit="<<ColTUnit<<" TForm="<<ColTForm<<" Repeat="<<ColRepeat
|
---|
927 | <<" DispWidth="<<ColDispWidth
|
---|
928 | <<endl;
|
---|
929 | }
|
---|
930 |
|
---|
931 | ///////////////////////////////////////////////////////////////////
|
---|
932 | ///////////////////////////////////////////////////////////////////
|
---|
933 | ///////////////////////////////////////////////////////////////////
|
---|
934 | ///////////////////////////////////////////////////////////////////
|
---|
935 |
|
---|
936 | //! Class for reading a column in a FITS ASCII or BINARY table with fits file opening
|
---|
937 |
|
---|
938 | /*!
|
---|
939 | \class SOPHYA::FitsABTColRead
|
---|
940 | \ingroup FitsIOServer
|
---|
941 | Class for reading a column in a FITS ASCII or BINARY table with fits file opening.
|
---|
942 | The FITS file is opened each time you instanciate a FitsABTColRead.
|
---|
943 | So reading "n" columns of the same FITS table by instanciating "n"
|
---|
944 | FitsABTColRead, will open "n" times te FITS file.
|
---|
945 | Use FitsABTColRd if you want to open the FITS file only once.
|
---|
946 | \verbatim
|
---|
947 | -- Exemple:
|
---|
948 | FitsABTColRead fbt("myfits.fits","BoloMuv_28",0,1000,1,3);
|
---|
949 | fbt.SetDebug(3);
|
---|
950 | fbt.Print(3);
|
---|
951 | // Read element by element
|
---|
952 | for(LONGLONG i=0;i<fbt.GetNbLine();i++) {
|
---|
953 | double x = fbt.Read(i);
|
---|
954 | if(i%lpmod==0) cout<<i<<": "<<x<<endl;
|
---|
955 | }
|
---|
956 | // Read into a vector
|
---|
957 | TVector<double> data;
|
---|
958 | LONGLONG n = fbt.Read(32,50,data);
|
---|
959 | cout<<"Number of values read: "<<n<<endl;
|
---|
960 | data.ReSize(100);
|
---|
961 | n = fbt.Read(10,-1,data);
|
---|
962 | cout<<"Number of values read: "<<n<<endl;
|
---|
963 | \endverbatim
|
---|
964 | */
|
---|
965 |
|
---|
966 |
|
---|
967 | //////////////////////////////////////////////////////////////
|
---|
968 | /*!
|
---|
969 | Constructor.
|
---|
970 | \param fname : FITS file name to be read
|
---|
971 | \param collabel : label of the column to be read
|
---|
972 | \param ihdu : number of the HDU where the column is.
|
---|
973 | \param blen : read buffer length
|
---|
974 | \param bsens : buffer reading direction
|
---|
975 | \param lp : debug level
|
---|
976 | \verbatim
|
---|
977 | - if ihdu<=0 first BINARY or ASCII table is taken
|
---|
978 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
979 | - bsens>0 read forward
|
---|
980 | bsens<0 read backward
|
---|
981 | bsens==0 read centered
|
---|
982 | \endverbatim
|
---|
983 | \warning ihdu = [1,nhdu]
|
---|
984 | */
|
---|
985 | FitsABTColRead::FitsABTColRead(string fname,string collabel
|
---|
986 | ,int ihdu,long blen,long bsens,int lp)
|
---|
987 | : FitsABTColRd(new FitsOpenFile(fname),collabel,ihdu,blen,bsens,lp)
|
---|
988 | {
|
---|
989 | }
|
---|
990 |
|
---|
991 | /*!
|
---|
992 | Constructor.
|
---|
993 | Same as before but the column is identified by its column number
|
---|
994 | \param colnum : number of the column to be read
|
---|
995 | \warning col = [0,ncol[
|
---|
996 | */
|
---|
997 | FitsABTColRead::FitsABTColRead(string fname,int colnum
|
---|
998 | ,int ihdu,long blen,long bsens,int lp)
|
---|
999 | : FitsABTColRd(new FitsOpenFile(fname),colnum,ihdu,blen,bsens,lp)
|
---|
1000 | {
|
---|
1001 | }
|
---|
1002 |
|
---|
1003 | /*! Constructor. see below */
|
---|
1004 | FitsABTColRead::FitsABTColRead(const char * cfname,const char* collabel
|
---|
1005 | ,int ihdu,long blen,long bsens,int lp)
|
---|
1006 | : FitsABTColRd(new FitsOpenFile(cfname),collabel,ihdu,blen,bsens,lp)
|
---|
1007 | {
|
---|
1008 | }
|
---|
1009 |
|
---|
1010 | /*! Constructor. see below */
|
---|
1011 | FitsABTColRead::FitsABTColRead(const char * cfname,int colnum
|
---|
1012 | ,int ihdu,long blen,long bsens,int lp)
|
---|
1013 | : FitsABTColRd(new FitsOpenFile(cfname),colnum,ihdu,blen,bsens,lp)
|
---|
1014 | {
|
---|
1015 | }
|
---|
1016 | /*! Constructor by default */
|
---|
1017 | FitsABTColRead::FitsABTColRead()
|
---|
1018 | : FitsABTColRd()
|
---|
1019 | {
|
---|
1020 | }
|
---|
1021 |
|
---|
1022 | /*! Constructor by copy */
|
---|
1023 | FitsABTColRead::FitsABTColRead(FitsABTColRead& fbt)
|
---|
1024 | {
|
---|
1025 | // --- ATTENTION ---
|
---|
1026 | // FitsABTColRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
1027 | FitsOpenFile* fof = new FitsOpenFile(*fbt.GetFitsOpenFile());
|
---|
1028 | Init(fof,fbt.GetColLabel().c_str()
|
---|
1029 | ,fbt.GetColNum(),fbt.HDU()
|
---|
1030 | ,fbt.GetBLen(),fbt.GetBSens(),fbt.DbgLevel);
|
---|
1031 | }
|
---|
1032 |
|
---|
1033 | /*! Destructor. */
|
---|
1034 | FitsABTColRead::~FitsABTColRead()
|
---|
1035 | {
|
---|
1036 | Delete(); // ?? inutile ??
|
---|
1037 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
1038 | if(FitsOF!=NULL) delete FitsOF;
|
---|
1039 | }
|
---|
1040 |
|
---|
1041 | ///////////////////////////////////////////////////////////////////
|
---|
1042 | ///////////////////////////////////////////////////////////////////
|
---|
1043 | ///////////////////////////////////////////////////////////////////
|
---|
1044 | ///////////////////////////////////////////////////////////////////
|
---|
1045 |
|
---|
1046 | FitsABTColRd1F::FitsABTColRd1F(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1047 | {
|
---|
1048 | Init(fof,ihdu,lp);
|
---|
1049 | }
|
---|
1050 |
|
---|
1051 | /*! Init routine called by the constructor */
|
---|
1052 | void FitsABTColRd1F::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1053 | {
|
---|
1054 | // Initialisation des Parametres Generaux
|
---|
1055 | ColLabel.resize(0); ColTUnit.resize(0); ColTForm.resize(0);
|
---|
1056 | ColTypeCode.resize(0); ColRepeat.resize(0); ColDispWidth.resize(0);
|
---|
1057 | StrBuff.resize(0);
|
---|
1058 | NBcol = 0; NBline = 0;
|
---|
1059 | SetNulVal(); SetDebug(lp);
|
---|
1060 | FitsOF = NULL;
|
---|
1061 |
|
---|
1062 | // Caracteristiques du FitsOpenFile
|
---|
1063 | FitsOF = fof;
|
---|
1064 | if(FitsOF==NULL)
|
---|
1065 | throw NullPtrError("FitsABTColRd1F::Init: FitsOpenFile pointer is NULL\n");
|
---|
1066 |
|
---|
1067 | if(GetFitsPtr()==NULL)
|
---|
1068 | throw NullPtrError("FitsABTColRd1F::Init: FitsPtr pointer is NULL\n");
|
---|
1069 |
|
---|
1070 | int sta = 0;
|
---|
1071 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1072 |
|
---|
1073 | // Get HDU for bin/ascii table
|
---|
1074 | // ATTENTION: le fichier est ouvert mais non positionne sur un HDU,
|
---|
1075 | // une classe utilisant ce fichier doit le positionner sur un HDU.
|
---|
1076 | // Par contre, si une autre classe utilise ce meme FitsOpenFile,
|
---|
1077 | // elle ne peut le positionner que sur ce meme HDU !
|
---|
1078 | if(FitsOF->GetPosStatus()==false) {
|
---|
1079 | if(ihdu==0) { // find the first BINARY then the first ASCII
|
---|
1080 | int rc = FitsOF->MoveToFirst(BINARY_TBL);
|
---|
1081 | if(rc!=BINARY_TBL) FitsOF->MoveToFirst(ASCII_TBL);
|
---|
1082 | } else {
|
---|
1083 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1084 | if(rc!=ihdu)
|
---|
1085 | throw RangeCheckError("FitsABTColRd1F::Init: Error moving to requested HDU\n");
|
---|
1086 | }
|
---|
1087 | } else { // Fits file has already been positionned
|
---|
1088 | if(ihdu>0 && ihdu!=HDU())
|
---|
1089 | throw RangeCheckError("FitsABTColRd1F::Init: file already posit. at another HDU\n");
|
---|
1090 | }
|
---|
1091 |
|
---|
1092 | // Check HDUType and set position status to TRUE
|
---|
1093 | if(HDUType()!=BINARY_TBL && HDUType()!=ASCII_TBL)
|
---|
1094 | throw TypeMismatchExc("FitsABTColRd1F::Init: HDU not ASCII/BINARY table\n");
|
---|
1095 | if(DbgLevel>1) cout<<"...Init ihdu="<<ihdu<<" HduType="<<HDUType()<<endl;
|
---|
1096 | FitsOF->SetPosStatus(true);
|
---|
1097 |
|
---|
1098 | // Get number of columns
|
---|
1099 | if(fits_get_num_cols(GetFitsPtr(),&NBcol,&sta)) {
|
---|
1100 | FitsOpenFile::printerror(sta);
|
---|
1101 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of columns\n");
|
---|
1102 | }
|
---|
1103 | if(DbgLevel>1) cout<<"...Init NBcol="<<NBcol<<endl;
|
---|
1104 | if(NBcol<1)
|
---|
1105 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of colums\n");
|
---|
1106 |
|
---|
1107 | // Get number of rows
|
---|
1108 | if(fits_get_num_rowsll(GetFitsPtr(),&NBline,&sta)) {
|
---|
1109 | FitsOpenFile::printerror(sta);
|
---|
1110 | throw NotAvailableOperation("FitsABTColRd1F::Init: Error getting number of rows\n");
|
---|
1111 | }
|
---|
1112 | if(DbgLevel>1) cout<<"...Init NBline="<<NBline<<endl;
|
---|
1113 | if(NBline<1)
|
---|
1114 | throw RangeCheckError("FitsABTColRd1F::Init: Bad number of rows\n");
|
---|
1115 |
|
---|
1116 | // --- Boucle sur les colonnes
|
---|
1117 | for(int ColNum=0;ColNum<NBcol;ColNum++) { // ***** ColNum
|
---|
1118 | // Get column type
|
---|
1119 | ColTypeCode.push_back(-999);
|
---|
1120 | if(fits_get_coltypell(GetFitsPtr(),ColNum+1,&ColTypeCode[ColNum],NULL,NULL,&sta)) {
|
---|
1121 | FitsOpenFile::printerror(sta);
|
---|
1122 | throw ParmError("FitsABTColRd1F::Init: Error getting column type\n");
|
---|
1123 | }
|
---|
1124 | if(DbgLevel>1) cout<<"...Init ColTypeCode="<<ColTypeCode[ColNum]<<endl;
|
---|
1125 | if(ColTypeCode[ColNum]<0 )
|
---|
1126 | throw ParmError("FitsABTColRd1F::Init: Selected column type decoding not implemented\n");
|
---|
1127 | // Get column name, tunit, tform
|
---|
1128 | char labelcol[128];
|
---|
1129 | char tunit[64], tform[64], tdisp[64];
|
---|
1130 | LONGLONG repeat=0; double tscale=1., tzero=0.;
|
---|
1131 | int rc=0;
|
---|
1132 | if(HDUType()==BINARY_TBL) {
|
---|
1133 | rc = fits_get_bcolparmsll(GetFitsPtr(),ColNum+1,labelcol,tunit,tform
|
---|
1134 | ,&repeat,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
1135 | } else {
|
---|
1136 | long repeatlng;
|
---|
1137 | rc = fits_get_acolparms(GetFitsPtr(),ColNum+1,labelcol,&repeatlng,tunit,tform
|
---|
1138 | ,&tscale,&tzero,NULL,tdisp,&sta);
|
---|
1139 | repeat = repeatlng;
|
---|
1140 | }
|
---|
1141 | if(rc) {
|
---|
1142 | FitsOpenFile::printerror(sta);
|
---|
1143 | throw RangeCheckError("FitsABTColRd1F::Init: Error getting the column caracteristics\n");
|
---|
1144 | }
|
---|
1145 | ColLabel.push_back(labelcol);
|
---|
1146 | ColTUnit.push_back(tunit);
|
---|
1147 | ColTForm.push_back(tform);
|
---|
1148 | ColRepeat.push_back(repeat);
|
---|
1149 |
|
---|
1150 | int cdispw = 0;
|
---|
1151 | fits_get_col_display_width(GetFitsPtr(),ColNum+1,&cdispw,&sta);
|
---|
1152 | ColDispWidth.push_back(cdispw);
|
---|
1153 | StrBuff.push_back(NULL);
|
---|
1154 |
|
---|
1155 | // some debug print if requested
|
---|
1156 | if(DbgLevel)
|
---|
1157 | cout<<"FitsABTColRd1F::Init Num="<<ColNum<<" Label="<<ColLabel[ColNum]
|
---|
1158 | <<" TypeCode="<<ColTypeCode[ColNum]<<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum]
|
---|
1159 | <<" Repeat="<<ColRepeat[ColNum]<<" ColDispWidth="<<ColDispWidth[ColNum]<<endl;
|
---|
1160 | if(DbgLevel>1)
|
---|
1161 | cout<<" (tscale="<<tscale<<",tzero="<<tzero<<",tdisp="<<tdisp<<")"<<endl;
|
---|
1162 | } // ***** ColNum
|
---|
1163 |
|
---|
1164 | }
|
---|
1165 |
|
---|
1166 | /*! Destructor. */
|
---|
1167 | FitsABTColRd1F::~FitsABTColRd1F()
|
---|
1168 | {
|
---|
1169 | Delete();
|
---|
1170 | }
|
---|
1171 |
|
---|
1172 | /*! Delete called by the destructor */
|
---|
1173 | void FitsABTColRd1F::Delete(void)
|
---|
1174 | {
|
---|
1175 | if(NBcol>0) for(int ColNum=0; ColNum<NBcol; ColNum++) {
|
---|
1176 | if(StrBuff[ColNum]==NULL) continue;
|
---|
1177 | delete [] StrBuff[ColNum];
|
---|
1178 | StrBuff[ColNum] = NULL;
|
---|
1179 | }
|
---|
1180 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1181 | }
|
---|
1182 |
|
---|
1183 | //////////////////////////////////////////////////////////////
|
---|
1184 | /*!
|
---|
1185 | Read a fitsheader key into double
|
---|
1186 | \param keyname : name of the key
|
---|
1187 | \return value into double
|
---|
1188 | */
|
---|
1189 | double FitsABTColRd1F::ReadKey(const char *keyname)
|
---|
1190 | {
|
---|
1191 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1192 | }
|
---|
1193 |
|
---|
1194 | /*!
|
---|
1195 | Read a fitsheader key into long
|
---|
1196 | \param keyname : name of the key
|
---|
1197 | \return value into long
|
---|
1198 | */
|
---|
1199 | long FitsABTColRd1F::ReadKeyL(const char *keyname)
|
---|
1200 | {
|
---|
1201 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1202 | }
|
---|
1203 |
|
---|
1204 | /*!
|
---|
1205 | Read a fitsheader key into long long
|
---|
1206 | \param keyname : name of the key
|
---|
1207 | \return value into long long
|
---|
1208 | */
|
---|
1209 | LONGLONG FitsABTColRd1F::ReadKeyLL(const char *keyname)
|
---|
1210 | {
|
---|
1211 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1212 | }
|
---|
1213 |
|
---|
1214 | /*!
|
---|
1215 | Read a fitsheader key into string
|
---|
1216 | \param keyname : name of the key
|
---|
1217 | \return value into string
|
---|
1218 | */
|
---|
1219 | string FitsABTColRd1F::ReadKeyS(const char *keyname)
|
---|
1220 | {
|
---|
1221 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1222 | }
|
---|
1223 |
|
---|
1224 | /////////////////////////////////////////////////
|
---|
1225 | int FitsABTColRd1F::GetColNum(const char *colname)
|
---|
1226 | // Get column number from column name
|
---|
1227 | {
|
---|
1228 | if(strlen(colname)<1 || NBcol<1) return -1;
|
---|
1229 | string slab(colname);
|
---|
1230 | for(int ColNum=0;ColNum<NBcol;ColNum++)
|
---|
1231 | if(slab == ColLabel[ColNum]) return ColNum;
|
---|
1232 | return -1;
|
---|
1233 | }
|
---|
1234 |
|
---|
1235 | /////////////////////////////////////////////////
|
---|
1236 | /*!
|
---|
1237 | Read row "n" element "nfirstel" of column "ColNum" and return the value into a double
|
---|
1238 | \warning be carefull for the range: row = [0,NRows[
|
---|
1239 | \return value in double
|
---|
1240 | \param n : number of the row to be read.
|
---|
1241 | \verbatim
|
---|
1242 | usebuffer == true : use read optimisation with bufferisation
|
---|
1243 | == false : no optimisation with bufferisation
|
---|
1244 | just read one value
|
---|
1245 | \endverbatim
|
---|
1246 | */
|
---|
1247 | double FitsABTColRd1F::Read(int ColNum,LONGLONG n,long nfirstel)
|
---|
1248 | // Attention: n=nline [0,NBline[, cfistio veut [1,NBline]
|
---|
1249 | // Attention: colnum [0,NBcol[ , cfistio veut [1,NBcol]
|
---|
1250 | // Attention: nfirstel [0,ColRepeat[ , cfistio veut [1,ColRepeat]
|
---|
1251 | {
|
---|
1252 | int sta=0;
|
---|
1253 | if(ColNum<0 || ColNum>=NBcol)
|
---|
1254 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside column range\n");
|
---|
1255 | if(n<0 || n>=NBline)
|
---|
1256 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside line range\n");
|
---|
1257 | if(nfirstel<0 || nfirstel>=ColRepeat[ColNum])
|
---|
1258 | throw RangeCheckError("FitsABTColRd1F::Read try to read outside element range: nfirstel>repeat\n");
|
---|
1259 |
|
---|
1260 | double val;
|
---|
1261 | fits_read_col(GetFitsPtr(),TDOUBLE,ColNum+1,n+1,nfirstel+1,1,NULL,&val,NULL,&sta);
|
---|
1262 | if(sta) {
|
---|
1263 | FitsOpenFile::printerror(sta);
|
---|
1264 | throw NotAvailableOperation("FitsABTColRd1F::Read: Error Reading Fits file\n");
|
---|
1265 | }
|
---|
1266 | return val;
|
---|
1267 | }
|
---|
1268 |
|
---|
1269 |
|
---|
1270 | /*!
|
---|
1271 | Read row "n" element "nfirstel" and return a complex value
|
---|
1272 | */
|
---|
1273 | complex<r_8> FitsABTColRd1F::ReadComplex(int ColNum,LONGLONG n,long nfirstel)
|
---|
1274 | {
|
---|
1275 | int sta=0;
|
---|
1276 | if(ColNum<0 || ColNum>=NBcol)
|
---|
1277 | throw RangeCheckError("FitsABTColRd1F::ReadComplex try to read outside column range\n");
|
---|
1278 | if(n<0 || n>=NBline)
|
---|
1279 | throw RangeCheckError("FitsABTColRd1F::ReadComplex try to read outside line range\n");
|
---|
1280 | if(nfirstel<0 || nfirstel>=ColRepeat[ColNum])
|
---|
1281 | throw RangeCheckError("FitsABTColRd1F::ReadComplex try to read outside element range: nfirstel>repeat\n");
|
---|
1282 |
|
---|
1283 | r_8 val[2];
|
---|
1284 | fits_read_col(GetFitsPtr(),TDBLCOMPLEX,ColNum+1,n+1,nfirstel+1,1,NULL,val,NULL,&sta);
|
---|
1285 | if(sta) {
|
---|
1286 | FitsOpenFile::printerror(sta);
|
---|
1287 | throw NotAvailableOperation("FitsABTColRd1F::ReadComplex: Error Reading Fits file\n");
|
---|
1288 | }
|
---|
1289 | return complex<r_8>(val[0],val[1]);
|
---|
1290 | }
|
---|
1291 |
|
---|
1292 | /*!
|
---|
1293 | Read row "n" element "nfirstel" and return in string (internal pointer)
|
---|
1294 | */
|
---|
1295 | char* FitsABTColRd1F::ReadInStr(int ColNum,LONGLONG n,long nfirstel)
|
---|
1296 | {
|
---|
1297 | int sta=0;
|
---|
1298 | if(ColNum<0 || ColNum>=NBcol)
|
---|
1299 | throw RangeCheckError("FitsABTColRd1F::ReadInStr try to read outside column range\n");
|
---|
1300 | if(n<0 || n>=NBline)
|
---|
1301 | throw RangeCheckError("FitsABTColRd1F::ReadInStr try to read outside line range\n");
|
---|
1302 | if(nfirstel<0 || nfirstel>=ColRepeat[ColNum])
|
---|
1303 | throw RangeCheckError("FitsABTColRd1F::ReadInStr try to read outside element range: nfirstel>repeat\n");
|
---|
1304 |
|
---|
1305 | if(StrBuff[ColNum]==NULL) StrBuff[ColNum] = new char[ColDispWidth[ColNum]+5];
|
---|
1306 | char nullstr[]="";
|
---|
1307 |
|
---|
1308 | fits_read_col(GetFitsPtr(),TSTRING,ColNum+1,n+1,nfirstel+1,1,nullstr,&(StrBuff[ColNum]),NULL,&sta);
|
---|
1309 | if(sta) {
|
---|
1310 | FitsOpenFile::printerror(sta);
|
---|
1311 | throw NotAvailableOperation("FitsABTColRd::ReadInStr: Error Reading Fits file\n");
|
---|
1312 | }
|
---|
1313 |
|
---|
1314 | return StrBuff[ColNum];
|
---|
1315 | }
|
---|
1316 |
|
---|
1317 | /*! Print on stream os */
|
---|
1318 | void FitsABTColRd1F::Print(ostream& os,int lp) const
|
---|
1319 | {
|
---|
1320 | os<<"FitsABTColRd1F:Print ("<<NulVal<<")"
|
---|
1321 | <<" ncols="<<NBcol<<" nrows="<<NBline;
|
---|
1322 | os<<"\n... "<<FileName()<<"["<<HDU()<<"/"<<NHDU()<<" type="<<HDUType()<<"]"<<endl;
|
---|
1323 | if(lp>0 && NBcol>0) {
|
---|
1324 | for(int ColNum=0;ColNum<NBcol;ColNum++) {
|
---|
1325 | os<<"..Col="<<ColNum<<" Label="<<ColLabel[ColNum]<<" TypeCode="<<ColTypeCode[ColNum]
|
---|
1326 | <<" TUnit="<<ColTUnit[ColNum]<<" TForm="<<ColTForm[ColNum]<<" Repeat="<<ColRepeat[ColNum]
|
---|
1327 | <<" DispWidth="<<ColDispWidth[ColNum]
|
---|
1328 | <<endl;
|
---|
1329 | }
|
---|
1330 | }
|
---|
1331 | }
|
---|
1332 |
|
---|
1333 | ///////////////////////////////////////////////////////////////////
|
---|
1334 | ///////////////////////////////////////////////////////////////////
|
---|
1335 | ///////////////////////////////////////////////////////////////////
|
---|
1336 | ///////////////////////////////////////////////////////////////////
|
---|
1337 |
|
---|
1338 | /*!
|
---|
1339 | Constructor.
|
---|
1340 | Same as before but the column is identified by its column number
|
---|
1341 | \param colnum : number of the column to be read
|
---|
1342 | \warning col = [0,ncol[
|
---|
1343 | */
|
---|
1344 | FitsABTColRead1F::FitsABTColRead1F(string fname,int ihdu,int lp)
|
---|
1345 | : FitsABTColRd1F(new FitsOpenFile(fname),ihdu,lp)
|
---|
1346 | {
|
---|
1347 | }
|
---|
1348 |
|
---|
1349 | /*! Constructor. see below */
|
---|
1350 | FitsABTColRead1F::FitsABTColRead1F(const char * cfname,int ihdu,int lp)
|
---|
1351 | : FitsABTColRd1F(new FitsOpenFile(cfname),ihdu,lp)
|
---|
1352 | {
|
---|
1353 | }
|
---|
1354 |
|
---|
1355 | /*! Destructor. */
|
---|
1356 | FitsABTColRead1F::~FitsABTColRead1F()
|
---|
1357 | {
|
---|
1358 | Delete(); // ?? inutile ??
|
---|
1359 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
1360 | if(FitsOF!=NULL) delete FitsOF;
|
---|
1361 | }
|
---|
1362 |
|
---|
1363 | ///////////////////////////////////////////////////////////////////
|
---|
1364 | ///////////////////////////////////////////////////////////////////
|
---|
1365 | ///////////////////////////////////////////////////////////////////
|
---|
1366 | ///////////////////////////////////////////////////////////////////
|
---|
1367 |
|
---|
1368 | //! Class for reading a 2D image from a FITS file
|
---|
1369 |
|
---|
1370 | /*!
|
---|
1371 | \class SOPHYA::FitsImg2DRd
|
---|
1372 | \ingroup FitsIOServer
|
---|
1373 | Class for reading a 2D image from a FITS file
|
---|
1374 | */
|
---|
1375 |
|
---|
1376 | //////////////////////////////////////////////////////////////
|
---|
1377 | /*!
|
---|
1378 | Constructor.
|
---|
1379 | \param fof : Pointer to the Class for opening the FITS file
|
---|
1380 | \param ihdu : number of the HDU where the image is.
|
---|
1381 | \param lp : debug level
|
---|
1382 | \verbatim
|
---|
1383 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1384 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1385 | \endverbatim
|
---|
1386 | \warning ihdu = [1,nhdu]
|
---|
1387 | */
|
---|
1388 | FitsImg2DRd::FitsImg2DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1389 | {
|
---|
1390 | Init(fof,ihdu,lp);
|
---|
1391 | }
|
---|
1392 |
|
---|
1393 | /*! Constructor by copy */
|
---|
1394 | FitsImg2DRd::FitsImg2DRd(FitsImg2DRd& fbt)
|
---|
1395 | {
|
---|
1396 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
1397 | }
|
---|
1398 |
|
---|
1399 | /*! Constructor by default */
|
---|
1400 | FitsImg2DRd::FitsImg2DRd()
|
---|
1401 | {
|
---|
1402 | Naxis[0] = Naxis[1] = 0;
|
---|
1403 | SetNulVal(); SetDebug(0);
|
---|
1404 | FitsOF = NULL;
|
---|
1405 | }
|
---|
1406 |
|
---|
1407 | /*! Init routine called by the constructor */
|
---|
1408 | void FitsImg2DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1409 | {
|
---|
1410 | // Initialisation des Parametres Generaux
|
---|
1411 | Naxis[0] = Naxis[1] = 0;
|
---|
1412 | SetNulVal(); SetDebug(lp);
|
---|
1413 | FitsOF = NULL;
|
---|
1414 |
|
---|
1415 | // Caracteristiques du FitsOpenFile
|
---|
1416 | FitsOF = fof;
|
---|
1417 | if(FitsOF==NULL)
|
---|
1418 | throw NullPtrError("FitsImg2DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
1419 |
|
---|
1420 | if(GetFitsPtr()==NULL)
|
---|
1421 | throw NullPtrError("FitsImg2DRd::Init: FitsPtr pointer is NULL\n");
|
---|
1422 |
|
---|
1423 | int sta = 0;
|
---|
1424 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1425 |
|
---|
1426 | // Get HDU 2D image
|
---|
1427 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
1428 | if(FitsOF->GetPosStatus()==false) {
|
---|
1429 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
1430 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
1431 | } else {
|
---|
1432 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1433 | if(rc!=ihdu)
|
---|
1434 | throw RangeCheckError("FitsImg2DRd::Init: Error moving to requested HDU\n");
|
---|
1435 | }
|
---|
1436 | } else { // Fits file has already been positionned
|
---|
1437 | if(ihdu>0 && ihdu!=HDU())
|
---|
1438 | throw RangeCheckError("FitsImg2DRd::Init: file already posit. at another HDU\n");
|
---|
1439 | }
|
---|
1440 |
|
---|
1441 | // Check HDUType and set position status to TRUE
|
---|
1442 | if(HDUType()!=IMAGE_HDU)
|
---|
1443 | throw TypeMismatchExc("FitsImg2DRd::Init: HDU not IMAGE_HDU\n");
|
---|
1444 | FitsOF->SetPosStatus(true);
|
---|
1445 |
|
---|
1446 | // Get NAXIS 1 et 2
|
---|
1447 | int nfound=0;
|
---|
1448 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h
|
---|
1449 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,2,Naxis,&nfound,&sta)) {
|
---|
1450 | FitsOpenFile::printerror(sta);
|
---|
1451 | throw RangeCheckError("FitsImg2DRd::Init: Error reading NAXIS cards\n");
|
---|
1452 | }
|
---|
1453 | if(DbgLevel>1)
|
---|
1454 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
1455 | <<Naxis[1]<<" (nfound="<<nfound<<")"<<endl;
|
---|
1456 | if(nfound!=2 || Naxis[0]<=0 || Naxis[1]<=0)
|
---|
1457 | throw NotAvailableOperation("FitsImg2DRd::Init: bad Naxis[0-1] value\n");
|
---|
1458 |
|
---|
1459 | }
|
---|
1460 |
|
---|
1461 | /*! Destructor. */
|
---|
1462 | FitsImg2DRd::~FitsImg2DRd()
|
---|
1463 | {
|
---|
1464 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1465 | Naxis[0] = Naxis[1] = 0;
|
---|
1466 | }
|
---|
1467 |
|
---|
1468 | //////////////////////////////////////////////////////////////
|
---|
1469 | /*!
|
---|
1470 | Read a fitsheader key into double
|
---|
1471 | \param keyname : name of the key
|
---|
1472 | \return value into double
|
---|
1473 | */
|
---|
1474 | double FitsImg2DRd::ReadKey(const char *keyname)
|
---|
1475 | {
|
---|
1476 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1477 | }
|
---|
1478 |
|
---|
1479 | /*!
|
---|
1480 | Read a fitsheader key into long
|
---|
1481 | \param keyname : name of the key
|
---|
1482 | \return value into long
|
---|
1483 | */
|
---|
1484 | long FitsImg2DRd::ReadKeyL(const char *keyname)
|
---|
1485 | {
|
---|
1486 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1487 | }
|
---|
1488 |
|
---|
1489 | /*!
|
---|
1490 | Read a fitsheader key into long long
|
---|
1491 | \param keyname : name of the key
|
---|
1492 | \return value into long long
|
---|
1493 | */
|
---|
1494 | LONGLONG FitsImg2DRd::ReadKeyLL(const char *keyname)
|
---|
1495 | {
|
---|
1496 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1497 | }
|
---|
1498 |
|
---|
1499 | /*!
|
---|
1500 | Read a fitsheader key into string
|
---|
1501 | \param keyname : name of the key
|
---|
1502 | \return value into string
|
---|
1503 | */
|
---|
1504 | string FitsImg2DRd::ReadKeyS(const char *keyname)
|
---|
1505 | {
|
---|
1506 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1507 | }
|
---|
1508 |
|
---|
1509 | //////////////////////////////////////////////////////////////
|
---|
1510 | /* REMARQUE:
|
---|
1511 | * Si une image FITS a NAXIS1=100 et NAXIS2=50
|
---|
1512 | * alors un tableau 2D juste assez grand pour contenir l'image
|
---|
1513 | * doit etre declare array[50][100] (et non pas array[100][50])
|
---|
1514 | * array[NAXIS2][NAXIS1]
|
---|
1515 | */
|
---|
1516 | /*!
|
---|
1517 | Read image into a TMatrix<uint_2>
|
---|
1518 | \warning TMatrix data(Naxis2,Naxis1)
|
---|
1519 | */
|
---|
1520 | LONGLONG FitsImg2DRd::Read(TMatrix<uint_2>& data)
|
---|
1521 | {
|
---|
1522 | int sta=0;
|
---|
1523 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
1524 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1525 |
|
---|
1526 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1527 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1528 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1529 | if(sta) {
|
---|
1530 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1531 | throw
|
---|
1532 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<uint_2>): Error Reading Fits file\n");
|
---|
1533 | }
|
---|
1534 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1535 | }
|
---|
1536 |
|
---|
1537 | delete [] arr;
|
---|
1538 | return Naxis[0]*Naxis[1];
|
---|
1539 | }
|
---|
1540 |
|
---|
1541 | /*! Read image into a TMatrix<int_4> */
|
---|
1542 | LONGLONG FitsImg2DRd::Read(TMatrix<int_4>& data)
|
---|
1543 | {
|
---|
1544 | int sta=0;
|
---|
1545 | int_4* arr = new int_4[Naxis[0]];
|
---|
1546 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1547 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
1548 |
|
---|
1549 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1550 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1551 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1552 | if(sta) {
|
---|
1553 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1554 | throw
|
---|
1555 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_4>): Error Reading Fits file\n");
|
---|
1556 | }
|
---|
1557 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1558 | }
|
---|
1559 |
|
---|
1560 | delete [] arr;
|
---|
1561 | return Naxis[0]*Naxis[1];
|
---|
1562 | }
|
---|
1563 |
|
---|
1564 | /*! Read image into a TMatrix<int_8> */
|
---|
1565 | LONGLONG FitsImg2DRd::Read(TMatrix<int_8>& data)
|
---|
1566 | {
|
---|
1567 | int sta=0;
|
---|
1568 | int_8* arr = new int_8[Naxis[0]];
|
---|
1569 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1570 |
|
---|
1571 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1572 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1573 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1574 | if(sta) {
|
---|
1575 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1576 | throw
|
---|
1577 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<int_8>): Error Reading Fits file\n");
|
---|
1578 | }
|
---|
1579 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1580 | }
|
---|
1581 |
|
---|
1582 | delete [] arr;
|
---|
1583 | return Naxis[0]*Naxis[1];
|
---|
1584 | }
|
---|
1585 |
|
---|
1586 | /*! Read image into a TMatrix<float> */
|
---|
1587 | LONGLONG FitsImg2DRd::Read(TMatrix<float>& data)
|
---|
1588 | {
|
---|
1589 | int sta=0;
|
---|
1590 | float* arr = new float[Naxis[0]];
|
---|
1591 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1592 |
|
---|
1593 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1594 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1595 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1596 | if(sta) {
|
---|
1597 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1598 | throw
|
---|
1599 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<float>): Error Reading Fits file\n");
|
---|
1600 | }
|
---|
1601 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1602 | }
|
---|
1603 |
|
---|
1604 | delete [] arr;
|
---|
1605 | return Naxis[0]*Naxis[1];
|
---|
1606 | }
|
---|
1607 |
|
---|
1608 | /*! Read image into a TMatrix<double> */
|
---|
1609 | LONGLONG FitsImg2DRd::Read(TMatrix<double>& data)
|
---|
1610 | {
|
---|
1611 | int sta=0;
|
---|
1612 | double* arr = new double[Naxis[0]];
|
---|
1613 | data.ReSize(Naxis[1],Naxis[0]);
|
---|
1614 |
|
---|
1615 | for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1616 | LONGLONG deb = j*Naxis[0]+1, nel = Naxis[0];
|
---|
1617 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1618 | if(sta) {
|
---|
1619 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1620 | throw
|
---|
1621 | NotAvailableOperation("FitsImg2DRd::Read(TMatrix<double>): Error Reading Fits file\n");
|
---|
1622 | }
|
---|
1623 | for(LONGLONG i=0;i<Naxis[0];i++) data(j,i) = arr[i];
|
---|
1624 | }
|
---|
1625 |
|
---|
1626 | delete [] arr;
|
---|
1627 | return Naxis[0]*Naxis[1];
|
---|
1628 | }
|
---|
1629 |
|
---|
1630 | /*! Read image pixel numcol,numrow with numcol=[0,Naxis1[ and numrow=[0,Naxis2[ */
|
---|
1631 | double FitsImg2DRd::Read(LONGLONG numcol, LONGLONG numrow)
|
---|
1632 | {
|
---|
1633 | int sta=0;
|
---|
1634 | if(numcol<0 || numrow<0 || numcol>=Naxis[0] || numrow>=Naxis[1])
|
---|
1635 | throw
|
---|
1636 | NotAvailableOperation("FitsImg2DRd::Read(col,row): bad col/row number\n");
|
---|
1637 |
|
---|
1638 | LONGLONG deb = numrow*Naxis[0] + numcol + 1;
|
---|
1639 | double val = 0.;
|
---|
1640 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta);
|
---|
1641 |
|
---|
1642 | if(sta) {
|
---|
1643 | FitsOpenFile::printerror(sta);
|
---|
1644 | throw
|
---|
1645 | NotAvailableOperation("FitsImg2DRd::Read(col,num): Error Reading Fits file\n");
|
---|
1646 | }
|
---|
1647 |
|
---|
1648 | return val;
|
---|
1649 | }
|
---|
1650 |
|
---|
1651 | ///////////////////////////////////////////////////////////////////
|
---|
1652 | ///////////////////////////////////////////////////////////////////
|
---|
1653 | ///////////////////////////////////////////////////////////////////
|
---|
1654 | ///////////////////////////////////////////////////////////////////
|
---|
1655 |
|
---|
1656 | //! Class for reading a 2D image from a FITS file
|
---|
1657 |
|
---|
1658 | /*!
|
---|
1659 | \class SOPHYA::FitsImg2DRead
|
---|
1660 | \ingroup FitsIOServer
|
---|
1661 | Class for reading a 2D image from a FITS file
|
---|
1662 | */
|
---|
1663 |
|
---|
1664 | //////////////////////////////////////////////////////////////
|
---|
1665 | /*!
|
---|
1666 | Constructor.
|
---|
1667 | \param fname : name of the FITS file
|
---|
1668 | \param ihdu : number of the HDU where the image is.
|
---|
1669 | \param lp : debug level
|
---|
1670 | \verbatim
|
---|
1671 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1672 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1673 | \endverbatim
|
---|
1674 | \warning ihdu = [1,nhdu]
|
---|
1675 | */
|
---|
1676 | FitsImg2DRead::FitsImg2DRead(string fname,int ihdu,int lp)
|
---|
1677 | : FitsImg2DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
1678 | {
|
---|
1679 | }
|
---|
1680 |
|
---|
1681 | /*! Constructor. see below */
|
---|
1682 | FitsImg2DRead::FitsImg2DRead(const char * cfname,int ihdu,int lp)
|
---|
1683 | : FitsImg2DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
1684 | {
|
---|
1685 | }
|
---|
1686 |
|
---|
1687 | /*! Constructor by default */
|
---|
1688 | FitsImg2DRead::FitsImg2DRead()
|
---|
1689 | : FitsImg2DRd()
|
---|
1690 | {
|
---|
1691 | }
|
---|
1692 |
|
---|
1693 | /*! Constructor by copy */
|
---|
1694 | FitsImg2DRead::FitsImg2DRead(FitsImg2DRead& fimg)
|
---|
1695 | {
|
---|
1696 | // --- ATTENTION ---
|
---|
1697 | // FitsImg2DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
1698 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
|
---|
1699 | Init(fof,fimg.HDU(),fimg.DbgLevel);
|
---|
1700 | }
|
---|
1701 |
|
---|
1702 | /*! Destructor. */
|
---|
1703 | FitsImg2DRead::~FitsImg2DRead()
|
---|
1704 | {
|
---|
1705 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
1706 | if(FitsOF!=NULL) delete FitsOF;
|
---|
1707 | }
|
---|
1708 |
|
---|
1709 |
|
---|
1710 |
|
---|
1711 | ///////////////////////////////////////////////////////////////////
|
---|
1712 | ///////////////////////////////////////////////////////////////////
|
---|
1713 | ///////////////////////////////////////////////////////////////////
|
---|
1714 | ///////////////////////////////////////////////////////////////////
|
---|
1715 |
|
---|
1716 | //! Class for reading a 3D image from a FITS file
|
---|
1717 |
|
---|
1718 | /*!
|
---|
1719 | \class SOPHYA::FitsImg3DRd
|
---|
1720 | \ingroup FitsIOServer
|
---|
1721 | Class for reading a 3D image from a FITS file
|
---|
1722 | */
|
---|
1723 |
|
---|
1724 | //////////////////////////////////////////////////////////////
|
---|
1725 | /*!
|
---|
1726 | Constructor.
|
---|
1727 | \param fof : Pointer to the Class for opening the FITS file
|
---|
1728 | \param ihdu : number of the HDU where the 3D image is.
|
---|
1729 | \param lp : debug level
|
---|
1730 | \verbatim
|
---|
1731 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
1732 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
1733 | \endverbatim
|
---|
1734 | \warning ihdu = [1,nhdu]
|
---|
1735 | */
|
---|
1736 | FitsImg3DRd::FitsImg3DRd(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1737 | {
|
---|
1738 | Init(fof,ihdu,lp);
|
---|
1739 | }
|
---|
1740 |
|
---|
1741 | /*! Constructor by copy */
|
---|
1742 | FitsImg3DRd::FitsImg3DRd(FitsImg3DRd& fbt)
|
---|
1743 | {
|
---|
1744 | Init(fbt.GetFitsOpenFile(),fbt.HDU(),fbt.DbgLevel);
|
---|
1745 | }
|
---|
1746 |
|
---|
1747 | /*! Constructor by default */
|
---|
1748 | FitsImg3DRd::FitsImg3DRd()
|
---|
1749 | {
|
---|
1750 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1751 | SetNulVal(); SetDebug(0);
|
---|
1752 | FitsOF = NULL;
|
---|
1753 | }
|
---|
1754 |
|
---|
1755 | /*! Init routine called by the constructor */
|
---|
1756 | void FitsImg3DRd::Init(FitsOpenFile* fof,int ihdu,int lp)
|
---|
1757 | {
|
---|
1758 | // Initialisation des Parametres Generaux
|
---|
1759 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1760 | SetNulVal(); SetDebug(lp);
|
---|
1761 | FitsOF = NULL;
|
---|
1762 |
|
---|
1763 | // Caracteristiques du FitsOpenFile
|
---|
1764 | FitsOF = fof;
|
---|
1765 | if(FitsOF==NULL)
|
---|
1766 | throw NullPtrError("FitsImg3DRd::Init: FitsOpenFile pointer is NULL\n");
|
---|
1767 |
|
---|
1768 | if(GetFitsPtr()==NULL)
|
---|
1769 | throw NullPtrError("FitsImg3DRd::Init: FitsPtr pointer is NULL\n");
|
---|
1770 |
|
---|
1771 | int sta = 0;
|
---|
1772 | if(ihdu<0) ihdu=0; if(ihdu>NHDU()) ihdu=NHDU();
|
---|
1773 |
|
---|
1774 | // Get HDU 3D image
|
---|
1775 | // ATTENTION: ... cf blabla equivalent dans FitsABTColRd::Init()
|
---|
1776 | if(FitsOF->GetPosStatus()==false) {
|
---|
1777 | if(ihdu==0) { // find the first IMAGE_HDU
|
---|
1778 | FitsOF->MoveToFirst(IMAGE_HDU);
|
---|
1779 | } else {
|
---|
1780 | int rc = FitsOF->MoveToHDU(ihdu);
|
---|
1781 | if(rc!=ihdu)
|
---|
1782 | throw RangeCheckError("FitsImg3DRd::Init: Error moving to requested HDU\n");
|
---|
1783 | }
|
---|
1784 | } else { // Fits file has already been positionned
|
---|
1785 | if(ihdu>0 && ihdu!=HDU())
|
---|
1786 | throw RangeCheckError("FitsImg3DRd::Init: file already posit. at another HDU\n");
|
---|
1787 | }
|
---|
1788 |
|
---|
1789 | // Check HDUType and set position status to TRUE
|
---|
1790 | if(HDUType()!=IMAGE_HDU)
|
---|
1791 | throw TypeMismatchExc("FitsImg3DRd::Init: HDU not IMAGE_HDU\n");
|
---|
1792 | FitsOF->SetPosStatus(true);
|
---|
1793 |
|
---|
1794 | // Get NAXIS 1, 2 et 3
|
---|
1795 | int nfound=0;
|
---|
1796 | // car fits_read_keys_lnglng n'est pas prototype dans longnam.h
|
---|
1797 | if(ffgknjj(GetFitsPtr(),"NAXIS",1,3,Naxis,&nfound,&sta)) {
|
---|
1798 | FitsOpenFile::printerror(sta);
|
---|
1799 | throw RangeCheckError("FitsImg3DRd::Init: Error reading NAXIS cards\n");
|
---|
1800 | }
|
---|
1801 | if(DbgLevel>1)
|
---|
1802 | cout<<"...Init(hdu="<<HDU()<<") NAXIS1="<<Naxis[0]<<" NAXIS2="
|
---|
1803 | <<Naxis[1]<<" NAXIS3="<<Naxis[2]<<" (nfound="<<nfound<<")"<<endl;
|
---|
1804 | if(nfound!=3 || Naxis[0]<=0 || Naxis[1]<=0 || Naxis[2]<=0)
|
---|
1805 | throw NotAvailableOperation("FitsImg3DRd::Init: bad Naxis[0-2] value\n");
|
---|
1806 |
|
---|
1807 | }
|
---|
1808 |
|
---|
1809 | /*! Destructor. */
|
---|
1810 | FitsImg3DRd::~FitsImg3DRd()
|
---|
1811 | {
|
---|
1812 | //--- Surtout on ne "fits_close_file" pas le fichier FITS !!!
|
---|
1813 | Naxis[0] = Naxis[1] = Naxis[2] = 0;
|
---|
1814 | }
|
---|
1815 |
|
---|
1816 | //////////////////////////////////////////////////////////////
|
---|
1817 | /*!
|
---|
1818 | Read a fitsheader key into double
|
---|
1819 | \param keyname : name of the key
|
---|
1820 | \return value into double
|
---|
1821 | */
|
---|
1822 | double FitsImg3DRd::ReadKey(const char *keyname)
|
---|
1823 | {
|
---|
1824 | return FitsOpenFile::ReadKey(GetFitsPtr(),keyname);
|
---|
1825 | }
|
---|
1826 |
|
---|
1827 | /*!
|
---|
1828 | Read a fitsheader key into long
|
---|
1829 | \param keyname : name of the key
|
---|
1830 | \return value into long
|
---|
1831 | */
|
---|
1832 | long FitsImg3DRd::ReadKeyL(const char *keyname)
|
---|
1833 | {
|
---|
1834 | return FitsOpenFile::ReadKeyL(GetFitsPtr(),keyname);
|
---|
1835 | }
|
---|
1836 |
|
---|
1837 | /*!
|
---|
1838 | Read a fitsheader key into long long
|
---|
1839 | \param keyname : name of the key
|
---|
1840 | \return value into long long
|
---|
1841 | */
|
---|
1842 | LONGLONG FitsImg3DRd::ReadKeyLL(const char *keyname)
|
---|
1843 | {
|
---|
1844 | return FitsOpenFile::ReadKeyLL(GetFitsPtr(),keyname);
|
---|
1845 | }
|
---|
1846 |
|
---|
1847 | /*!
|
---|
1848 | Read a fitsheader key into string
|
---|
1849 | \param keyname : name of the key
|
---|
1850 | \return value into string
|
---|
1851 | */
|
---|
1852 | string FitsImg3DRd::ReadKeyS(const char *keyname)
|
---|
1853 | {
|
---|
1854 | return FitsOpenFile::ReadKeyS(GetFitsPtr(),keyname);
|
---|
1855 | }
|
---|
1856 |
|
---|
1857 | //////////////////////////////////////////////////////////////
|
---|
1858 | /* REMARQUE:
|
---|
1859 | * Dans TArray A(naxis1,naxis2,naxis3);
|
---|
1860 | * A(i,j,k) -> i varie le plus vite et k le moins vite
|
---|
1861 | */
|
---|
1862 | /*!
|
---|
1863 | Read 3D image into a TArray<uint_2>
|
---|
1864 | */
|
---|
1865 | LONGLONG FitsImg3DRd::Read(TArray<uint_2>& data)
|
---|
1866 | {
|
---|
1867 | int sta=0;
|
---|
1868 | uint_2* arr = new uint_2[Naxis[0]];
|
---|
1869 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1870 |
|
---|
1871 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1872 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1873 | fits_read_img(GetFitsPtr(),TUSHORT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1874 | if(sta) {
|
---|
1875 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1876 | throw
|
---|
1877 | NotAvailableOperation("FitsImg3DRd::Read(TArray<uint_2>): Error Reading Fits file\n");
|
---|
1878 | }
|
---|
1879 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1880 | }
|
---|
1881 |
|
---|
1882 | delete [] arr;
|
---|
1883 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1884 | }
|
---|
1885 |
|
---|
1886 | /*! Read 3D image into a TArray<int_4> */
|
---|
1887 | LONGLONG FitsImg3DRd::Read(TArray<int_4>& data)
|
---|
1888 | {
|
---|
1889 | int sta=0;
|
---|
1890 | int_4* arr = new int_4[Naxis[0]];
|
---|
1891 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1892 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
1893 |
|
---|
1894 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1895 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1896 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1897 | if(sta) {
|
---|
1898 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1899 | throw
|
---|
1900 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_4>): Error Reading Fits file\n");
|
---|
1901 | }
|
---|
1902 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1903 | }
|
---|
1904 |
|
---|
1905 | delete [] arr;
|
---|
1906 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1907 | }
|
---|
1908 |
|
---|
1909 | /*! Read 3D image into a TArray<int_8> */
|
---|
1910 | LONGLONG FitsImg3DRd::Read(TArray<int_8>& data)
|
---|
1911 | {
|
---|
1912 | int sta=0;
|
---|
1913 | int_8* arr = new int_8[Naxis[0]];
|
---|
1914 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1915 |
|
---|
1916 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1917 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1918 | fits_read_img(GetFitsPtr(),TLONGLONG,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1919 | if(sta) {
|
---|
1920 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1921 | throw
|
---|
1922 | NotAvailableOperation("FitsImg3DRd::Read(TArray<int_8>): Error Reading Fits file\n");
|
---|
1923 | }
|
---|
1924 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1925 | }
|
---|
1926 |
|
---|
1927 | delete [] arr;
|
---|
1928 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1929 | }
|
---|
1930 |
|
---|
1931 | /*! Read 3D image into a TArray<float> */
|
---|
1932 | LONGLONG FitsImg3DRd::Read(TArray<float>& data)
|
---|
1933 | {
|
---|
1934 | int sta=0;
|
---|
1935 | float* arr = new float[Naxis[0]];
|
---|
1936 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1937 |
|
---|
1938 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1939 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1940 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1941 | if(sta) {
|
---|
1942 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1943 | throw
|
---|
1944 | NotAvailableOperation("FitsImg3DRd::Read(TArray<float>): Error Reading Fits file\n");
|
---|
1945 | }
|
---|
1946 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1947 | }
|
---|
1948 |
|
---|
1949 | delete [] arr;
|
---|
1950 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1951 | }
|
---|
1952 |
|
---|
1953 | /*! Read 3D image into a TArray<double> */
|
---|
1954 | LONGLONG FitsImg3DRd::Read(TArray<double>& data)
|
---|
1955 | {
|
---|
1956 | int sta=0;
|
---|
1957 | double* arr = new double[Naxis[0]];
|
---|
1958 | sa_size_t ndim[3] = {Naxis[0],Naxis[1],Naxis[2]}; data.ReSize(3,ndim);
|
---|
1959 |
|
---|
1960 | for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
|
---|
1961 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1962 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,arr,NULL,&sta);
|
---|
1963 | if(sta) {
|
---|
1964 | FitsOpenFile::printerror(sta); delete [] arr;
|
---|
1965 | throw
|
---|
1966 | NotAvailableOperation("FitsImg3DRd::Read(TArray<double>): Error Reading Fits file\n");
|
---|
1967 | }
|
---|
1968 | for(LONGLONG i=0;i<Naxis[0];i++) data(i,j,k) = arr[i];
|
---|
1969 | }
|
---|
1970 |
|
---|
1971 | delete [] arr;
|
---|
1972 | return Naxis[0]*Naxis[1]*Naxis[2];
|
---|
1973 | }
|
---|
1974 |
|
---|
1975 | /*! Read 3D image into a TVector<int_4> */
|
---|
1976 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<int_4>& data)
|
---|
1977 | {
|
---|
1978 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2])
|
---|
1979 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<int_4>): bad j/k number\n");
|
---|
1980 | int sta=0;
|
---|
1981 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]);
|
---|
1982 | int T = (sizeof(long)==4) ? TLONG: TINT;
|
---|
1983 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
1984 | fits_read_img(GetFitsPtr(),T,deb,nel,&NulVal,data.Data(),NULL,&sta);
|
---|
1985 | if(sta) {
|
---|
1986 | FitsOpenFile::printerror(sta);
|
---|
1987 | throw
|
---|
1988 | NotAvailableOperation("FitsImg3DRd::Read(TVector<int_4>): Error Reading Fits file\n");
|
---|
1989 | }
|
---|
1990 | return Naxis[0];
|
---|
1991 | }
|
---|
1992 |
|
---|
1993 | /*! Read 3D image into a TVector<float> */
|
---|
1994 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<float>& data)
|
---|
1995 | {
|
---|
1996 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2])
|
---|
1997 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<float>): bad j/k number\n");
|
---|
1998 | int sta=0;
|
---|
1999 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]);
|
---|
2000 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
2001 | fits_read_img(GetFitsPtr(),TFLOAT,deb,nel,&NulVal,data.Data(),NULL,&sta);
|
---|
2002 | if(sta) {
|
---|
2003 | FitsOpenFile::printerror(sta);
|
---|
2004 | throw
|
---|
2005 | NotAvailableOperation("FitsImg3DRd::Read(TVector<float>): Error Reading Fits file\n");
|
---|
2006 | }
|
---|
2007 | return Naxis[0];
|
---|
2008 | }
|
---|
2009 |
|
---|
2010 | /*! Read 3D image into a TVector<double> */
|
---|
2011 | LONGLONG FitsImg3DRd::Read(LONGLONG j, LONGLONG k, TVector<double>& data)
|
---|
2012 | {
|
---|
2013 | if(j<0 || k<0 || j>=Naxis[1] || k>=Naxis[2])
|
---|
2014 | throw NotAvailableOperation("FitsImg3DRd::Read(TVector<double>): bad j/k number\n");
|
---|
2015 | int sta=0;
|
---|
2016 | if(data.Size() != Naxis[0]) data.ReSize(Naxis[0]);
|
---|
2017 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0];
|
---|
2018 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,nel,&NulVal,data.Data(),NULL,&sta);
|
---|
2019 | if(sta) {
|
---|
2020 | FitsOpenFile::printerror(sta);
|
---|
2021 | throw
|
---|
2022 | NotAvailableOperation("FitsImg3DRd::Read(TVector<double>): Error Reading Fits file\n");
|
---|
2023 | }
|
---|
2024 | return Naxis[0];
|
---|
2025 | }
|
---|
2026 |
|
---|
2027 | /*! Read 3D image pixel i,j,k with i=[0,Naxis1[ , j=[0,Naxis2[ , k=[0,Naxis3[ */
|
---|
2028 | double FitsImg3DRd::Read(LONGLONG i, LONGLONG j, LONGLONG k)
|
---|
2029 | {
|
---|
2030 | int sta=0;
|
---|
2031 | if(i<0 || j<0 || k<0 || i>=Naxis[0] || j>=Naxis[1] || k>=Naxis[2])
|
---|
2032 | throw
|
---|
2033 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): bad i/j/k number\n");
|
---|
2034 |
|
---|
2035 | LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+i+1;
|
---|
2036 | double val = 0.;
|
---|
2037 | fits_read_img(GetFitsPtr(),TDOUBLE,deb,1,&NulVal,&val,NULL,&sta);
|
---|
2038 |
|
---|
2039 | if(sta) {
|
---|
2040 | FitsOpenFile::printerror(sta);
|
---|
2041 | throw
|
---|
2042 | NotAvailableOperation("FitsImg3DRd::Read(i,j,k): Error Reading Fits file\n");
|
---|
2043 | }
|
---|
2044 |
|
---|
2045 | return val;
|
---|
2046 | }
|
---|
2047 |
|
---|
2048 | ///////////////////////////////////////////////////////////////////
|
---|
2049 | ///////////////////////////////////////////////////////////////////
|
---|
2050 | ///////////////////////////////////////////////////////////////////
|
---|
2051 | ///////////////////////////////////////////////////////////////////
|
---|
2052 |
|
---|
2053 | //! Class for reading a 3D image from a FITS file
|
---|
2054 |
|
---|
2055 | /*!
|
---|
2056 | \class SOPHYA::FitsImg3DRead
|
---|
2057 | \ingroup FitsIOServer
|
---|
2058 | Class for reading a 3D image from a FITS file
|
---|
2059 | */
|
---|
2060 |
|
---|
2061 | //////////////////////////////////////////////////////////////
|
---|
2062 | /*!
|
---|
2063 | Constructor.
|
---|
2064 | \param fname : name of the FITS file
|
---|
2065 | \param ihdu : number of the HDU where the 3D image is.
|
---|
2066 | \param lp : debug level
|
---|
2067 | \verbatim
|
---|
2068 | - if ihdu<=0 first IMAGE hdu is taken
|
---|
2069 | - if ihdu>nhdu ihdu is set to nhdu
|
---|
2070 | \endverbatim
|
---|
2071 | \warning ihdu = [1,nhdu]
|
---|
2072 | */
|
---|
2073 | FitsImg3DRead::FitsImg3DRead(string fname,int ihdu,int lp)
|
---|
2074 | : FitsImg3DRd(new FitsOpenFile(fname),ihdu,lp)
|
---|
2075 | {
|
---|
2076 | }
|
---|
2077 |
|
---|
2078 | /*! Constructor. see below */
|
---|
2079 | FitsImg3DRead::FitsImg3DRead(const char * cfname,int ihdu,int lp)
|
---|
2080 | : FitsImg3DRd(new FitsOpenFile(cfname),ihdu,lp)
|
---|
2081 | {
|
---|
2082 | }
|
---|
2083 |
|
---|
2084 | /*! Constructor by default */
|
---|
2085 | FitsImg3DRead::FitsImg3DRead()
|
---|
2086 | : FitsImg3DRd()
|
---|
2087 | {
|
---|
2088 | }
|
---|
2089 |
|
---|
2090 | /*! Constructor by copy */
|
---|
2091 | FitsImg3DRead::FitsImg3DRead(FitsImg3DRead& fimg)
|
---|
2092 | {
|
---|
2093 | // --- ATTENTION ---
|
---|
2094 | // FitsImg3DRead ferme le fichier FITS: il faut dupliquer le FitsOpenFile
|
---|
2095 | FitsOpenFile* fof = new FitsOpenFile(*fimg.GetFitsOpenFile());
|
---|
2096 | Init(fof,fimg.HDU(),fimg.DbgLevel);
|
---|
2097 | }
|
---|
2098 |
|
---|
2099 | /*! Destructor. */
|
---|
2100 | FitsImg3DRead::~FitsImg3DRead()
|
---|
2101 | {
|
---|
2102 | // On detruit le FitsOpenFile, cad qu'on ferme (fits_file_close) le fichier FITS
|
---|
2103 | if(FitsOF!=NULL) delete FitsOF;
|
---|
2104 | }
|
---|