source: Sophya/trunk/SophyaExt/FitsIOServer/fabtwriter.cc@ 3412

Last change on this file since 3412 was 3128, checked in by cmv, 19 years ago

gestion gros fichiers FITS dans fabtcolread et fabtwriter cmv 11/01/2007

File size: 34.2 KB
Line 
1/* Writer de table Fits (binaire ou ASCII) */
2#include "sopnamsp.h"
3#include "machdefs.h"
4#include <stdlib.h>
5#include <stdio.h>
6#include "pexceptions.h"
7#include "fabtwriter.h"
8
9//////////////////////////////////////////////////////////////
10//////////////////////////////////////////////////////////////
11//////////////////////////////////////////////////////////////
12//////////////////////////////////////////////////////////////
13/*!
14 \class SOPHYA::FitsWriter
15 \ingroup FitsIOServer
16 Class for writing into a FITS file (DO NOT USE)
17*/
18
19/*! Constructor (DO NOT USE). */
20FitsWriter::FitsWriter(string fname,int lp)
21{
22 cr_or_upd_fits(fname.c_str(),false,lp);
23}
24
25/*! Constructor (DO NOT USE). */
26FitsWriter::FitsWriter(const char* cfname,int lp)
27{
28 cr_or_upd_fits(cfname,false,lp);
29}
30
31/*! Constructor (DO NOT USE). */
32FitsWriter::FitsWriter(string fname,bool update,int lp)
33{
34 cr_or_upd_fits(fname.c_str(),update,lp);
35}
36
37/*! Constructor (DO NOT USE). */
38FitsWriter::FitsWriter(const char* cfname,bool update,int lp)
39{
40 cr_or_upd_fits(cfname,update,lp);
41}
42
43/*! See FitsWriter() */
44void FitsWriter::cr_or_upd_fits(const char *cfname,bool update,int lp)
45{
46 FitsPtr = NULL;
47 HduType = 0;
48 SetDebug(lp);
49 FitsFN = cfname;
50 NOverFlow = 0;
51 Update = update;
52 // Init key structure
53 DoubleKey.resize(0);
54 LongKey.resize(0);
55 LongLongKey.resize(0);
56 StringKey.resize(0);
57
58 if(DbgLevel)
59 cout<<"FitsWriter::cr_or_upd_fits FitsFN="<<FitsFN<<endl;
60
61 if(FitsFN.size() <= 0 )
62 throw ParmError("FitsWriter::cr_or_upd_fits: Fits file name error\n");
63
64 // create or update FITS file
65 int sta=0;
66 if(Update) {
67 if(fits_open_file(&FitsPtr,FitsFN.c_str(),READWRITE,&sta)) {
68 printerror(sta);
69 throw NullPtrError("FitsWriter::cr_or_upd_fits: Error opening Fits file for update\n");
70 }
71 if(DbgLevel) cout<<"FitsWriter::cr_or_upd_fits: fits file has been opened for update"<<endl;
72 } else {
73 if(fits_create_file(&FitsPtr,FitsFN.c_str(),&sta)) {
74 printerror(sta);
75 throw NullPtrError("FitsWriter::cr_or_upd_fits: Error creating new Fits file\n");
76 }
77 if(DbgLevel) cout<<"FitsWriter::cr_or_upd_fits: a new fits file has been created"<<endl;
78 }
79
80 // create d'un Primary HDU
81 //LONGLONG naxes[1] = {0};
82 //if(fits_create_imgll(FitsPtr,BYTE_IMG,0,naxes,&sta)) {
83 // printerror(sta);
84 // throw NullPtrError("FitsWriter::cr_or_upd_fits: Error creating Primary extension\n");
85 //}
86}
87
88/*! Destructor */
89FitsWriter::~FitsWriter()
90{
91 int sta = 0;
92 writekeys();
93 if(fits_close_file(FitsPtr,&sta)) printerror(sta);
94 FitsPtr = NULL;
95}
96
97/*! Flush the FitsIO buffer to set good Fits file in case of problems */
98void FitsWriter::Flush(void)
99{
100 if(FitsPtr==NULL) return;
101 int sta = 0;
102 if(fits_flush_file(FitsPtr,&sta)) printerror(sta);
103}
104
105
106/*! Write a double value into Fits Header */
107void FitsWriter::WriteKey(const char *keyname,double val,char* comment)
108{
109 if(keyname==NULL || strlen(keyname)<=0) return;
110 KeyDouble k;
111 k.keyname=keyname;
112 k.val=val;
113 if(comment) k.comment=comment; else k.comment="";
114 DoubleKey.push_back(k);
115}
116
117/*! Write a long value into Fits Header */
118void FitsWriter::WriteKey(const char *keyname,long val,char* comment)
119{
120 if(keyname==NULL || strlen(keyname)<=0) return;
121 KeyLong k;
122 k.keyname=keyname;
123 k.val=val;
124 if(comment) k.comment=comment; else k.comment="";
125 LongKey.push_back(k);
126}
127
128/*! Write a long long value into Fits Header */
129void FitsWriter::WriteKey(const char *keyname,LONGLONG val,char* comment)
130{
131 if(keyname==NULL || strlen(keyname)<=0) return;
132 KeyLongLong k;
133 k.keyname=keyname;
134 k.val=val;
135 if(comment) k.comment=comment; else k.comment="";
136 LongLongKey.push_back(k);
137}
138
139/*! Write a string value into Fits Header */
140void FitsWriter::WriteKey(const char *keyname,string val,char* comment)
141{
142 if(keyname==NULL || strlen(keyname)<=0) return;
143 KeyString k;
144 k.keyname=keyname;
145 k.val=val;
146 if(comment) k.comment=comment; else k.comment="";
147 StringKey.push_back(k);
148}
149
150void FitsWriter::writekeys(void)
151// Ecriture effective des clefs
152{
153 if(FitsPtr==NULL) return;
154 int sta=0;
155 if(DoubleKey.size()>0)
156 for(unsigned long i=0;i<DoubleKey.size();i++) {
157 char* key = const_cast<char*>(DoubleKey[i].keyname.c_str());
158 char* com = const_cast<char*>(DoubleKey[i].comment.c_str());
159 double val = DoubleKey[i].val;
160 if(fits_update_key(FitsPtr,TDOUBLE,key,&val,com,&sta))
161 printerror(sta);
162 }
163 if(LongKey.size()>0)
164 for(unsigned long i=0;i<LongKey.size();i++) {
165 char* key = const_cast<char*>(LongKey[i].keyname.c_str());
166 char* com = const_cast<char*>(LongKey[i].comment.c_str());
167 long val = LongKey[i].val;
168 if(fits_update_key(FitsPtr,TLONG,key,&val,com,&sta))
169 printerror(sta);
170 }
171 if(LongLongKey.size()>0)
172 for(unsigned long i=0;i<LongLongKey.size();i++) {
173 char* key = const_cast<char*>(LongLongKey[i].keyname.c_str());
174 char* com = const_cast<char*>(LongLongKey[i].comment.c_str());
175 LONGLONG val = LongLongKey[i].val;
176 if(fits_update_key(FitsPtr,TLONGLONG,key,&val,com,&sta))
177 printerror(sta);
178 }
179 if(StringKey.size()>0)
180 for(unsigned long i=0;i<StringKey.size();i++) {
181 char* key = const_cast<char*>(StringKey[i].keyname.c_str());
182 char* com = const_cast<char*>(StringKey[i].comment.c_str());
183 char* val = const_cast<char*>(StringKey[i].val.c_str());
184 if(fits_update_key(FitsPtr,TSTRING,key,val,com,&sta))
185 printerror(sta);
186 }
187 DoubleKey.resize(0);
188 LongKey.resize(0);
189 LongLongKey.resize(0);
190 StringKey.resize(0);
191}
192
193void FitsWriter::printerrorwrite(const char* type,int col,LONGLONG row,int sta)
194{
195 if(sta==NUM_OVERFLOW) {NOverFlow++; return;}
196 printerror(sta);
197 char str[256];
198 sprintf(str,"FitsWriter::Write_%s: Error Writing Fits c=%d r=%ld sta=%d"
199 ,type,col,(long)row,sta);
200 throw NotAvailableOperation(str);
201}
202
203void FitsWriter::printerror(int sta) const
204{
205 int stat = sta;
206 fits_report_error(stdout,stat);
207 fflush(stdout);
208 return;
209}
210
211//////////////////////////////////////////////////////////////////
212//////////////////////////////////////////////////////////////////
213//////////////////////////////////////////////////////////////////
214//////////////////////////////////////////////////////////////////
215/*!
216 \class SOPHYA::FitsABTWriter
217 \ingroup FitsIOServer
218 Class for writing a FITS ASCII or BINARY table
219 \verbatim
220 //-----------------------------------------------------------
221 OPENING A NEW FILE AND WRITING INTO
222 -- Exemple 1: Writing element by element
223 FitsABTWriter fbtw(fitswrit,BINARY_TBL);
224 fbtw.SetExtName("MY_OWN_EXTENSION");
225 int c1 = fbtw.AddCol("vars",NULL,"km",TSHORT); // col=0
226 int c2 = fbtw.AddCol("vars2",NULL,"km",TSHORT); // col=1
227 int c3 = fbtw.AddCol("varl",NULL,"Degre",TLONG); // col=2
228 int c4 = fbtw.AddCol("varf",NULL,"",TFLOAT); // col=3
229 int c5 = fbtw.AddCol("vard","","arcmin",TDOUBLE); // col=4
230 fbtw.SetDebug(3);
231 for(LONGLONG i=0;i<1000;i++) {
232 double x = i;
233 fbtw.Write(c1,i,1000.*x); // if overflow, managed by cfitsio
234 // Write(int,long,double) is called
235 fbtw.Write(c2,i,(short)(1000.*x));
236 // if overflow, managed by language
237 // Write(int,long,short) is called
238 fbtw.Write(c3,i,x);
239 fbtw.Write(c4,i,x);
240 fbtw.Write(c5,i,x);
241 }
242 cout<<"Number of Overflows when writing: "
243 <<fbtw.GetNOverFlow()<<endl;
244
245 //-----------------------------------------------------------
246 -- Exemple 2: Writing into TVector
247 ...
248 TVector<double> datad(100);
249 TVector<float> dataf(100);
250 TVector<int_4> datal(100);
251 for(LONGLONG i=0;i<9990;i+=100) {
252 LONGLONG i2=i+100-1; if(i2>=9990) i2=9990-1;
253 for(LONGLONG j=0;j<100;j++) datad(i) = ...;
254 for(LONGLONG j=0;j<100;j++) dataf(i) = ...;
255 for(LONGLONG j=0;j<100;j++) datal(i) = ...;
256 fbtw.Write(1,i,datal);
257 fbtw.Write(2,i,dataf);
258 fbtw.Write(3,i,datad);
259 }
260 \endverbatim
261 \verbatim
262 //-----------------------------------------------------------
263 //-----------------------------------------------------------
264 //-----------------------------------------------------------
265 OPENING A NEW FILE AND WRITING 2 TABLE EXTENSIONS SIMULTANEOUSLY INTO
266 try {
267
268 cout<<">>>>> Creating a new fits file with FitsABTWriter"<<endl;
269 FitsABTWriter fbtw("!cmvtstfits3.fits",BINARY_TBL,3);
270 //FitsABTWriter fbtw("!cmvtstfits3.fits",false,BINARY_TBL,3);
271 fbtw.SetExtName("Test fits table 1");
272 cout<<"Writing Keys"<<endl;
273 fbtw.WriteKey("MYKEYL",(long)123456789,"my LONG key");
274 fbtw.WriteKey("MYKEYLL",(LONGLONG)123456789,"my LONGLONG key");
275 fbtw.WriteKey("MYKEYD",1.9999999,"my DOUBLE key");
276 fbtw.WriteKey("MYKEYC","how are you ?","my CHAR* key");
277 dum="do you feel better ?";
278 fbtw.WriteKey("MYKEYS",dum,"my STRING key");
279 i1 = fbtw.AddCol("x1",NULL,"unit1",TDOUBLE);
280 i2 = fbtw.AddCol("x2",NULL,"unit2",TDOUBLE);
281 i3 = fbtw.AddCol("x3",NULL,"unit3",TDOUBLE);
282 fbtw.Print();
283
284 cout<<">>>>> Another extension fits table with FitsABTWriter"<<endl;
285 FitsABTWriter fbtw2("cmvtstfits3.fits",true,BINARY_TBL,3);
286 fbtw2.SetExtName("Test fits table 2");
287 cout<<"Writing Keys"<<endl;
288 fbtw2.WriteKey("MYKEYL",(long)-123456789,"my new LONG key");
289 fbtw2.WriteKey("MYKEYLL",(LONGLONG)-123456789,"my new LONGLONG key");
290 fbtw2.WriteKey("MYKEYD",-1.9999999,"my new clef DOUBLE key");
291 fbtw2.WriteKey("MYKEYC","how are you NOW ?","my new CHAR* key");
292 dum="do you feel better NOW ?";
293 fbtw2.WriteKey("MYKEYS",dum,"my new STRING key");
294 i11 = fbtw2.AddCol("x11",NULL,"unit11",TDOUBLE);
295 i12 = fbtw2.AddCol("x12",NULL,"unit12",TDOUBLE);
296 i13 = fbtw2.AddCol("x13",NULL,"unit13",TDOUBLE);
297 fbtw2.Print();
298
299 cout<<">>>>> Write into the 2 tables simultaneously"<<endl;
300 for(LONGLONG i=0;i<NNN;i++) {
301 fbtw.Write(i1,i,i+1.);
302 fbtw.Write(i2,i,i+11.);
303 fbtw.Write(i3,i,i+101.);
304 fbtw2.Write(i11,i,-(i+1.));
305 fbtw2.Write(i12,i,-(i+11.));
306 fbtw2.Write(i13,i,-(i+101.));
307 }
308
309 } catch (PThrowable & exc) {
310 cout<<"Exception : "<<(string)typeid(exc).name()
311 <<" - Msg= "<<exc.Msg()<<endl;
312 return -2;
313 } catch (...) {
314 cout<<" some other exception was caught !"<<endl;
315 return -2;
316 }
317 \endverbatim
318*/
319
320//////////////////////////////////////////////////////////////
321/*!
322 Constructor.
323 \param fname : FITS file name to be written (a new fits file is created)
324 \param hdutype : type of extension to be created (BINARY_TBL or ASCII_TBL)
325 \param lp : debug level
326*/
327FitsABTWriter::FitsABTWriter(string fname,int hdutype,int lp)
328: FitsWriter(fname,lp)
329{
330 FirstTime = true;
331 HduType = hdutype;
332 if(HduType!=BINARY_TBL && HduType!=ASCII_TBL)
333 throw
334 TypeMismatchExc("FitsABTWriter::FitsABTWriter: Only BINARY or ASCII table permitted\n");
335}
336
337/*!
338 Constructor.
339 \param cfname : FITS file name to be written (a new fits file is created)
340 \param hdutype : type of extension to be created (BINARY_TBL or ASCII_TBL)
341 \param lp : debug level
342*/
343FitsABTWriter::FitsABTWriter(const char* cfname,int hdutype,int lp)
344: FitsWriter(cfname,lp)
345{
346 FirstTime = true;
347 HduType = hdutype;
348 if(HduType!=BINARY_TBL && HduType!=ASCII_TBL)
349 throw
350 TypeMismatchExc("FitsABTWriter::FitsABTWriter: Only BINARY or ASCII table permitted\n");
351}
352
353/*!
354 Constructor.
355 \param fname : FITS file name to be written (created or updated)
356 \param update : file is created if FALSE, open for update if TRUE
357 \param hdutype : type of extension to be created (BINARY_TBL or ASCII_TBL)
358 \param lp : debug level
359*/
360FitsABTWriter::FitsABTWriter(string fname,bool update,int hdutype,int lp)
361: FitsWriter(fname,update,lp)
362{
363 FirstTime = true;
364 HduType = hdutype;
365 if(HduType!=BINARY_TBL && HduType!=ASCII_TBL)
366 throw
367 TypeMismatchExc("FitsABTWriter::FitsABTWriter: Only BINARY or ASCII table permitted\n");
368}
369
370/*!
371 Constructor.
372 \param cfname : FITS file name to be written (created or updated)
373 \param update : file is created if FALSE, open for update if TRUE
374 \param hdutype : type of extension to be created (BINARY_TBL or ASCII_TBL)
375 \param lp : debug level
376*/
377FitsABTWriter::FitsABTWriter(const char* cfname,bool update,int hdutype,int lp)
378: FitsWriter(cfname,update,lp)
379{
380 FirstTime = true;
381 HduType = hdutype;
382 if(HduType!=BINARY_TBL && HduType!=ASCII_TBL)
383 throw
384 TypeMismatchExc("FitsABTWriter::FitsABTWriter: Only BINARY or ASCII table permitted\n");
385}
386
387/*! Destructor */
388FitsABTWriter::~FitsABTWriter()
389{
390}
391
392//////////////////////////////////////////////////////////////
393/*!
394 Add a new column to the FITS table
395 \param label : column label
396 \param tform : fits tform definition ("1I","1J","1E","1J",...)
397 (can be automatically set as "datatype"
398 if BINARY_TBL and tform="" or tform=NULL)
399 \param tunit : fits tunit definition (optional)
400 \param datatype : TBYTE TSHORT TLONG (TINT32BIT) TLONGLONG TFLOAT TDOUBLE
401 TUSHORT TULONG TSBYTE. That parameter is only use in case
402 of a BINARY_TBL table when tform is not defined).
403 \return The number of the new added column in the table.
404 \warning col = [0,ncol-1]
405*/
406int FitsABTWriter::addcol(const char* label,const char* tform
407 ,const char* tunit,int datatype)
408{
409 if(!FirstTime)
410 throw AllocationError("FitsABTWriter::addcol: table already created\n");
411
412 // Gestion auto du tform pour les tables binaires avec le datatype (si non-definie)
413 bool tformauto = false;
414 if(HduType==BINARY_TBL || HduType==ASCII_TBL) {
415 if(tform==NULL) tformauto = true;
416 else if(strlen(tform)<=0) tformauto = true;
417 }
418 if(tformauto && HduType==BINARY_TBL) {
419 char str[8];
420 if(datatype==TBYTE) strcpy(str,"1B");
421 else if(datatype==TSHORT) strcpy(str,"1I");
422 else if(datatype==TLONG) strcpy(str,"1J");
423#ifdef TINT32BIT
424 else if(datatype==TINT32BIT) strcpy(str,"1J");
425#endif
426#ifdef TLONGLONG
427 else if(datatype==TLONGLONG) strcpy(str,"1K");
428#endif
429 else if(datatype==TFLOAT) strcpy(str,"1E");
430 else if(datatype==TDOUBLE) strcpy(str,"1D");
431 else if(datatype==TUSHORT) strcpy(str,"1U");
432 else if(datatype==TULONG) strcpy(str,"1V");
433#ifdef TSBYTE
434 else if(datatype==TSBYTE) strcpy(str,"1S");
435#endif
436 else
437 throw ParmError("FitsABTWriter::addcol: datatype not allowed\n");
438 TForm.push_back(str);
439 } else if(tformauto && HduType==ASCII_TBL) {
440 char str[8];
441 if(datatype==TBYTE) strcpy(str,"I5");
442 else if(datatype==TSHORT) strcpy(str,"I7");
443 else if(datatype==TLONG) strcpy(str,"I11");
444#ifdef TINT32BIT
445 else if(datatype==TINT32BIT) strcpy(str,"I11");
446#endif
447#ifdef TLONGLONG
448 else if(datatype==TLONGLONG) strcpy(str,"I21");
449#endif
450 else if(datatype==TFLOAT) strcpy(str,"E29.20");
451 else if(datatype==TDOUBLE) strcpy(str,"E29.20");
452 else if(datatype==TUSHORT) strcpy(str,"I7");
453 else if(datatype==TULONG) strcpy(str,"I11");
454#ifdef TSBYTE
455 else if(datatype==TSBYTE) strcpy(str,"I5");
456#endif
457 else
458 throw ParmError("FitsABTWriter::addcol: datatype not allowed\n");
459 TForm.push_back(str);
460 } else {
461 if(tform) TForm.push_back(tform); else TForm.push_back("");
462 datatype = 0;
463 }
464 Label.push_back(label);
465 if(tunit) TUnit.push_back(tunit); else TUnit.push_back("");
466
467 int n = (int) Label.size() -1;
468
469 if(DbgLevel)
470 cout<<"FitsABTWriter::addcol["<<n<<"] Label="<<Label[n]
471 <<" TForm="<<TForm[n]
472 <<" TUnit="<<TUnit[n]
473 <<" datatype="<<datatype<<endl;
474
475 return n;
476}
477
478/*! Create the table. Done at the first write request. */
479void FitsABTWriter::createtbl(void)
480{
481 if(!FirstTime) return;
482
483 int tfields = Label.size();
484 if(tfields<=0)
485 throw ParmError("FitsABTWriter::createtbl: Zero column asked !\n");
486
487 LONGLONG nrows = 0;
488 char *extname = NULL;
489 char **ttype = (char **) malloc(tfields*sizeof(char *));
490 char **tform = (char **) malloc(tfields*sizeof(char *));
491 char **tunit = (char **) malloc(tfields*sizeof(char *));
492
493 if(ExtName.size()>0) {
494 extname = (char *) malloc((strlen(ExtName.c_str())+1)*sizeof(char));
495 strcpy(extname,ExtName.c_str());
496 }
497 for(int i=0;i<tfields;i++) {
498 ttype[i] = (char *) malloc((strlen(Label[i].c_str())+1)*sizeof(char));
499 strcpy(ttype[i],Label[i].c_str());
500 tform[i] = (char *) malloc((strlen(TForm[i].c_str())+1)*sizeof(char));
501 strcpy(tform[i],TForm[i].c_str());
502 tunit[i] = (char *) malloc((strlen(TUnit[i].c_str())+1)*sizeof(char));
503 strcpy(tunit[i],TUnit[i].c_str());
504 }
505
506 // append a new empty binary/ascii table onto the FITS file
507 int sta=0;
508 if(fits_create_tbl(FitsPtr,HduType,nrows,tfields,ttype,tform,tunit,extname,&sta)) {
509 printerror(sta);
510 throw NullPtrError("FitsABTWriter::createtbl: Error creating Table extension\n");
511 }
512
513 // menage
514 if(extname) delete [] extname;
515 for(int i=0;i<tfields;i++) {
516 if(ttype[i]) delete [] ttype[i];
517 if(tform[i]) delete [] tform[i];
518 if(tunit[i]) delete [] tunit[i];
519 }
520 if(ttype) delete [] ttype;
521 if(tform) delete [] tform;
522 if(tunit) delete [] tunit;
523
524 FirstTime = false;
525}
526
527//////////////////////////////////////////////////////////////
528/*!
529 Write a data to FITS file.
530 \param col : column number [0,ncol[
531 \param row : row number [0,nrow[
532 \param val : value to be written
533 \warning that routine write a SHORT value into column "col"
534 which could have been defined with an other type.
535 Cast is performed by the cfitsio package.
536 \verbatim
537 WARNING: suppose that the column has be defined to be TSHORT
538 and suppose that you wanted to write a double value "val"
539 - If you write dummy.Write(col,row,(short)(val))
540 the Write(int,long,short) routine is called and
541 the cast is performed by the C++ language.
542 - If you write dummy.Write(col,row,val) where val is double
543 the Write(int,long,double) routine is called and
544 the cast is performed by the cfistio package.
545 \endverbatim
546*/
547
548/*! Write signed char (1 Byte) data to FITS file (see below) */
549void FitsABTWriter::Write(int col,LONGLONG row,int_1 val)
550{
551#ifdef TSBYTE
552 if(FirstTime) createtbl();
553 int sta=0;
554 if(fits_write_col(FitsPtr,TSBYTE,col+1,row+1,1,1,&val,&sta))
555 printerrorwrite("signed char",col,row,sta);
556#else
557 throw PException("FitsABTWriter::Write(..,int_1) Not in that cfitsio version");
558#endif
559}
560
561/*! Write unsigned char (1 Byte) data to FITS file (see below) */
562void FitsABTWriter::Write(int col,LONGLONG row,uint_1 val)
563{
564 if(FirstTime) createtbl();
565 int sta=0;
566 if(fits_write_col(FitsPtr,TBYTE,col+1,row+1,1,1,&val,&sta))
567 printerrorwrite("unsigned char",col,row,sta);
568}
569
570/*! Write short (2 Bytes) data to FITS file (see below) */
571void FitsABTWriter::Write(int col,LONGLONG row,int_2 val)
572{
573 if(FirstTime) createtbl();
574 int sta=0;
575 if(fits_write_col(FitsPtr,TSHORT,col+1,row+1,1,1,&val,&sta))
576 printerrorwrite("short",col,row,sta);
577}
578
579/*! Write unsigned short (2 Bytes) data to FITS file (see below) */
580void FitsABTWriter::Write(int col,LONGLONG row,uint_2 val)
581{
582 if(FirstTime) createtbl();
583 int sta=0;
584 if(fits_write_col(FitsPtr,TUSHORT,col+1,row+1,1,1,&val,&sta))
585 printerrorwrite("unsigned short",col,row,sta);
586}
587
588/*! Write long (4 Bytes) data to FITS file (see below) */
589void FitsABTWriter::Write(int col,LONGLONG row,int_4 val)
590{
591 if(FirstTime) createtbl();
592 int sta=0;
593 // Bug ou inconsistence cfitsio sur machine ou long=8Bytes ?
594 int T = (sizeof(long)==4) ? TLONG: TINT;
595 if(fits_write_col(FitsPtr,T,col+1,row+1,1,1,&val,&sta))
596 printerrorwrite("long",col,row,sta);
597}
598
599/*! Write unsigned long (4 Bytes) data to FITS file (see below) */
600void FitsABTWriter::Write(int col,LONGLONG row,uint_4 val)
601{
602 if(FirstTime) createtbl();
603 int sta=0;
604 // Bug ou inconsistence cfitsio sur machine ou long=8Bytes ?
605 int T = (sizeof(unsigned long)==4) ? TULONG: TUINT;
606 if(fits_write_col(FitsPtr,T,col+1,row+1,1,1,&val,&sta))
607 printerrorwrite("long",col,row,sta);
608}
609
610/*! Write long long (8 Bytes) data to FITS file (see below) */
611void FitsABTWriter::Write(int col,LONGLONG row,int_8 val)
612{
613#ifdef TLONGLONG
614 if(FirstTime) createtbl();
615 int sta=0;
616 if(fits_write_col(FitsPtr,TLONGLONG,col+1,row+1,1,1,&val,&sta))
617 printerrorwrite("long long",col,row,sta);
618#else
619 throw PException("FitsABTWriter::Write(..,int_8) Not in that cfitsio version");
620#endif
621}
622
623/*! Write float data to FITS file (see below) */
624void FitsABTWriter::Write(int col,LONGLONG row,float val)
625{
626 if(FirstTime) createtbl();
627 int sta=0;
628 if(fits_write_col(FitsPtr,TFLOAT,col+1,row+1,1,1,&val,&sta))
629 printerrorwrite("float",col,row,sta);
630}
631
632/*! Write double data to FITS file (see below) */
633void FitsABTWriter::Write(int col,LONGLONG row,double val)
634{
635 if(FirstTime) createtbl();
636 int sta=0;
637 if(fits_write_col(FitsPtr,TDOUBLE,col+1,row+1,1,1,&val,&sta))
638 printerrorwrite("double",col,row,sta);
639}
640
641//////////////////////////////////////////////////////////////
642/*!
643 Write a vector of data to FITS file.
644 \param col : column number [0,ncol[
645 \param row : starting row number [0,nrow[
646 \param val : vector to be written
647 \return "N" = number of the next row to be written,
648 that is "N-1" is the number of the last row written.
649*/
650
651/*! Write a vector of unsigned short (2 Bytes) data to FITS file (see below) */
652LONGLONG FitsABTWriter::Write(int col,LONGLONG row,TVector<uint_2>& val)
653{
654 if(FirstTime) createtbl();
655 LONGLONG nel = val.Size();
656 int sta=0;
657 if(fits_write_col(FitsPtr,TUSHORT,col+1,row+1,1,nel,val.Data(),&sta))
658 printerrorwrite("long",col,row,sta);
659 return row+nel;
660}
661
662/*! Write a vector of long (4 Bytes) data to FITS file (see below) */
663LONGLONG FitsABTWriter::Write(int col,LONGLONG row,TVector<int_4>& val)
664{
665 if(FirstTime) createtbl();
666 LONGLONG nel = val.Size();
667 int sta=0;
668 // Bug ou inconsistence cfitsio sur machine ou long=8Bytes ?
669 int T = (sizeof(long)==4) ? TLONG: TINT;
670 if(fits_write_col(FitsPtr,T,col+1,row+1,1,nel,val.Data(),&sta))
671 printerrorwrite("long",col,row,sta);
672 return row+nel;
673}
674
675/*! Write a vector of long long (8 Bytes) data to FITS file (see below) */
676LONGLONG FitsABTWriter::Write(int col,LONGLONG row,TVector<int_8>& val)
677{
678#ifdef TLONGLONG
679 if(FirstTime) createtbl();
680 LONGLONG nel = val.Size();
681 int sta=0;
682 if(fits_write_col(FitsPtr,TLONGLONG,col+1,row+1,1,nel,val.Data(),&sta))
683 printerrorwrite("long long",col,row,sta);
684 return row+nel;
685#else
686 throw PException("FitsABTWriter::Write(..,TVector<int_8>&) Not in that cfitsio version");
687#endif
688}
689
690/*! Write a vector of float data to FITS file (see below) */
691LONGLONG FitsABTWriter::Write(int col,LONGLONG row,TVector<float>& val)
692{
693 if(FirstTime) createtbl();
694 LONGLONG nel = val.Size();
695 int sta=0;
696 if(fits_write_col(FitsPtr,TFLOAT,col+1,row+1,1,nel,val.Data(),&sta))
697 printerrorwrite("float",col,row,sta);
698 return row+nel;
699}
700
701/*! Write a vector of double data to FITS file (see below) */
702LONGLONG FitsABTWriter::Write(int col,LONGLONG row,TVector<double>& val)
703{
704 if(FirstTime) createtbl();
705 LONGLONG nel = val.Size();
706 int sta=0;
707 if(fits_write_col(FitsPtr,TDOUBLE,col+1,row+1,1,nel,val.Data(),&sta))
708 printerrorwrite("double",col,row,sta);
709 return row+nel;
710}
711
712/////////////////////////////////////////////////
713void FitsABTWriter::Print(ostream& os,int lp) const
714{
715os<<"FitsABTWriter::Print: FitsFN "<<FitsFN<<endl
716 <<" HduType "<<HduType<<" NOverFlow "<<NOverFlow
717 <<" NCol "<<Label.size()<<endl;
718if(Label.size()>0 && lp>=1)
719 for(int i=0;i<(int)Label.size();i++)
720 os<<i<<"... Label="<<Label[i]<<" TForm="<<TForm[i]<<" TUnit="<<TUnit[i]<<endl;
721}
722
723//////////////////////////////////////////////////////////////////
724//////////////////////////////////////////////////////////////////
725//////////////////////////////////////////////////////////////////
726//////////////////////////////////////////////////////////////////
727/*!
728 \class SOPHYA::FitsImg2DWriter
729 \ingroup FitsIOServer
730 Class for writing an image into FITS file
731*/
732
733/*!
734 Constructor.
735 \param fname : FITS file name to be written (a new fits file is created)
736 \param bitpix : image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
737 \param lp : debug level
738*/
739FitsImg2DWriter::FitsImg2DWriter(string fname,int bitpix,int lp)
740: FitsWriter(fname,lp)
741{
742 BitPix = bitpix;
743 HduType = IMAGE_HDU;
744 FirstTime = true;
745 Naxis[0] = Naxis[1] = 0;
746}
747
748/*!
749 Constructor.
750 \param cfname : FITS file name to be written (a new fits file is created)
751 \param bitpix : image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
752 \param lp : debug level
753*/
754FitsImg2DWriter::FitsImg2DWriter(const char* cfname,int bitpix,int lp)
755: FitsWriter(cfname,lp)
756{
757 BitPix = bitpix;
758 HduType = IMAGE_HDU;
759 FirstTime = true;
760 Naxis[0] = Naxis[1] = 0;
761}
762
763/*!
764 Constructor.
765 \param fname : FITS file name to be written (created or updated)
766 \param update : file is created if FALSE, open for update if TRUE
767 \param bitpix : image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
768 \param lp : debug level
769*/
770FitsImg2DWriter::FitsImg2DWriter(string fname,bool update,int bitpix,int lp)
771: FitsWriter(fname,update,lp)
772{
773 BitPix = bitpix;
774 HduType = IMAGE_HDU;
775 FirstTime = true;
776 Naxis[0] = Naxis[1] = 0;
777}
778
779/*!
780 Constructor.
781 \param cfname : FITS file name to be written (created or updated)
782 \param update : file is created if FALSE, open for update if TRUE
783 \param bitpix : image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
784 \param lp : debug level
785*/
786FitsImg2DWriter::FitsImg2DWriter(const char* cfname,bool update,int bitpix,int lp)
787: FitsWriter(cfname,update,lp)
788{
789 BitPix = bitpix;
790 HduType = IMAGE_HDU;
791 FirstTime = true;
792 Naxis[0] = Naxis[1] = 0;
793}
794
795/*! Destructor */
796FitsImg2DWriter::~FitsImg2DWriter()
797{
798}
799
800/*! Create the image. Done at the first write request. */
801void FitsImg2DWriter::createimg(void)
802{
803 if(!FirstTime)
804 throw NotAvailableOperation("FitsImg2DWriter::createimg: already created image\n");
805 if(Naxis[0]<=0 || Naxis[1]<=0)
806 throw ParmError("FitsImg2DWriter::createimg: bad Naxis 1 or 2 value\n");
807
808 int sta=0;
809 if(fits_create_imgll(FitsPtr,BitPix,2,Naxis,&sta)) {
810 printerror(sta);
811 throw NullPtrError("FitsImg2DWriter::createimg: Error creating image extension\n");
812 }
813
814 FirstTime = false;
815}
816
817/*!
818 Write an unsigned short image to FITS file.
819 \warning TMatrix data(Naxis2,Naxis1) means Data(row,column)
820*/
821void FitsImg2DWriter::Write(TMatrix<uint_2>& data)
822{
823 Naxis[0]=data.NCols(); Naxis[1]=data.NRows(); createimg();
824 uint_2* arr = new uint_2[Naxis[0]];
825
826 for(LONGLONG l=0;l<Naxis[1];l++) {
827 for(LONGLONG c=0;c<Naxis[0];c++) arr[c] = data(l,c);
828 LONGLONG deb = l*Naxis[0]+1, nel = Naxis[0]; int sta=0;
829 fits_write_img(FitsPtr,TUSHORT,deb,nel,arr,&sta);
830 if(sta) {
831 printerrorwrite("uint_2",0,l,sta); delete [] arr;
832 throw
833 NotAvailableOperation("FitsImg2DRd::Write(TMatrix<uint_2>): Error Writing Fits file\n");
834 }
835 }
836
837 delete [] arr;
838}
839
840/*! Write a long image to FITS file. */
841void FitsImg2DWriter::Write(TMatrix<int_4>& data)
842{
843 int T = (sizeof(long)==4) ? TLONG: TINT;
844 Naxis[0]=data.NCols(); Naxis[1]=data.NRows(); createimg();
845 int_4* arr = new int_4[Naxis[0]];
846
847 for(LONGLONG l=0;l<Naxis[1];l++) {
848 for(LONGLONG c=0;c<Naxis[0];c++) arr[c] = data(l,c);
849 LONGLONG deb = l*Naxis[0]+1, nel = Naxis[0]; int sta=0;
850 fits_write_img(FitsPtr,T,deb,nel,arr,&sta);
851 if(sta) {
852 printerrorwrite("int_4",0,l,sta); delete [] arr;
853 throw
854 NotAvailableOperation("FitsImg2DRd::Write(TMatrix<int_4>): Error Writing Fits file\n");
855 }
856 }
857
858 delete [] arr;
859}
860
861/*! Write a float image to FITS file. */
862void FitsImg2DWriter::Write(TMatrix<float>& data)
863{
864 Naxis[0]=data.NCols(); Naxis[1]=data.NRows(); createimg();
865 float* arr = new float[Naxis[0]];
866
867 for(LONGLONG l=0;l<Naxis[1];l++) {
868 for(LONGLONG c=0;c<Naxis[0];c++) arr[c] = data(l,c);
869 LONGLONG deb = l*Naxis[0]+1, nel = Naxis[0]; int sta=0;
870 fits_write_img(FitsPtr,TFLOAT,deb,nel,arr,&sta);
871 if(sta) {
872 printerrorwrite("float",0,l,sta); delete [] arr;
873 throw
874 NotAvailableOperation("FitsImg2DRd::Write(TMatrix<float>): Error Writing Fits file\n");
875 }
876 }
877
878 delete [] arr;
879}
880
881/*! Write a double image to FITS file. */
882void FitsImg2DWriter::Write(TMatrix<double>& data)
883{
884 Naxis[0]=data.NCols(); Naxis[1]=data.NRows(); createimg();
885 double* arr = new double[Naxis[0]];
886
887 for(LONGLONG l=0;l<Naxis[1];l++) {
888 for(LONGLONG c=0;c<Naxis[0];c++) arr[c] = data(l,c);
889 LONGLONG deb = l*Naxis[0]+1, nel = Naxis[0]; int sta=0;
890 fits_write_img(FitsPtr,TDOUBLE,deb,nel,arr,&sta);
891 if(sta) {
892 printerrorwrite("double",0,l,sta); delete [] arr;
893 throw
894 NotAvailableOperation("FitsImg2DRd::Write(TMatrix<double>): Error Writing Fits file\n");
895 }
896 }
897
898 delete [] arr;
899}
900
901/*! Print infos. */
902void FitsImg2DWriter::Print(ostream& os) const
903{
904os<<"FitsImg2DWriter::Print: FitsFN "<<FitsFN<<endl
905 <<" HduType "<<HduType<<" NOverFlow "<<NOverFlow<<" BitPix "<<BitPix
906 <<" Naxis1 "<<Naxis[0]<<" Naxis2 "<<Naxis[1]<<endl;
907}
908
909
910//////////////////////////////////////////////////////////////////
911//////////////////////////////////////////////////////////////////
912//////////////////////////////////////////////////////////////////
913//////////////////////////////////////////////////////////////////
914/*!
915 \class SOPHYA::FitsImg3DWriter
916 \ingroup FitsIOServer
917 Class for writing an 3D image into FITS file
918*/
919
920/*!
921 Constructor.
922 \param fname : FITS file name to be written (a new fits file is created)
923 \param bitpix : 3D image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
924 \param lp : debug level
925*/
926FitsImg3DWriter::FitsImg3DWriter(string fname,int bitpix,int lp)
927: FitsWriter(fname,lp)
928{
929 BitPix = bitpix;
930 HduType = IMAGE_HDU;
931 FirstTime = true;
932 Naxis[0] = Naxis[1] = Naxis[2] = 0;
933}
934
935/*!
936 Constructor.
937 \param cfname : FITS file name to be written (a new fits file is created)
938 \param bitpix : 3D image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
939 \param lp : debug level
940*/
941FitsImg3DWriter::FitsImg3DWriter(const char* cfname,int bitpix,int lp)
942: FitsWriter(cfname,lp)
943{
944 BitPix = bitpix;
945 HduType = IMAGE_HDU;
946 FirstTime = true;
947 Naxis[0] = Naxis[1] = Naxis[2] = 0;
948}
949
950/*!
951 Constructor.
952 \param fname : FITS file name to be written (created or updated)
953 \param update : file is created if FALSE, open for update if TRUE
954 \param bitpix : 3D image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
955 \param lp : debug level
956*/
957FitsImg3DWriter::FitsImg3DWriter(string fname,bool update,int bitpix,int lp)
958: FitsWriter(fname,update,lp)
959{
960 BitPix = bitpix;
961 HduType = IMAGE_HDU;
962 FirstTime = true;
963 Naxis[0] = Naxis[1] = Naxis[2] = 0;
964}
965
966/*!
967 Constructor.
968 \param cfname : FITS file name to be written (created or updated)
969 \param update : file is created if FALSE, open for update if TRUE
970 \param bitpix : 3D image type (BYTE_IMG,USHORT_IMG,SHORT_IMG,LONG_IMG,FLOAT_IMG,DOUBLE_IMG)
971 \param lp : debug level
972*/
973FitsImg3DWriter::FitsImg3DWriter(const char* cfname,bool update,int bitpix,int lp)
974: FitsWriter(cfname,update,lp)
975{
976 BitPix = bitpix;
977 HduType = IMAGE_HDU;
978 FirstTime = true;
979 Naxis[0] = Naxis[1] = Naxis[2] = 0;
980}
981
982/*! Destructor */
983FitsImg3DWriter::~FitsImg3DWriter()
984{
985}
986
987/*! Create the 3D image. Done at the first write request. */
988void FitsImg3DWriter::createimg(void)
989{
990 if(!FirstTime)
991 throw NotAvailableOperation("FitsImg3DWriter::createimg: already created 3D image\n");
992 if(Naxis[0]<=0 || Naxis[1]<=0 || Naxis[2]<=0)
993 throw ParmError("FitsImg3DWriter::createimg: bad Naxis 1 or 2 or 3 value\n");
994
995 int sta=0;
996 if(fits_create_imgll(FitsPtr,BitPix,3,Naxis,&sta)) {
997 printerror(sta);
998 throw NullPtrError("FitsImg3DWriter::createimg: Error creating 3D image extension\n");
999 }
1000
1001 FirstTime = false;
1002}
1003
1004/*!
1005 Write an unsigned short 3D image to FITS file.
1006*/
1007void FitsImg3DWriter::Write(TArray<uint_2>& data)
1008{
1009 if(data.Rank()!=3)
1010 throw ParmError("FitsImg3DRd::Write(TArray<uint_2>): not a 3D array\n");
1011
1012 Naxis[0]=data.SizeX(); Naxis[1]=data.SizeY(); Naxis[2]=data.SizeZ(); createimg();
1013 uint_2* arr = new uint_2[Naxis[0]];
1014
1015 for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
1016 for(LONGLONG i=0;i<Naxis[0];i++) arr[i] = data(i,j,k);
1017 LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; int sta=0;
1018 fits_write_img(FitsPtr,TUSHORT,deb,nel,arr,&sta);
1019 if(sta) {
1020 printerrorwrite("uint_2",j,k,sta); delete [] arr;
1021 throw
1022 NotAvailableOperation("FitsImg3DRd::Write(TArray<uint_2>): Error Writing Fits file\n");
1023 }
1024 }
1025
1026 delete [] arr;
1027}
1028
1029/*! Write a long 3D image to FITS file. */
1030void FitsImg3DWriter::Write(TArray<int_4>& data)
1031{
1032 if(data.Rank()!=3)
1033 throw ParmError("FitsImg3DRd::Write(TArray<int_4>): not a 3D array\n");
1034
1035 int T = (sizeof(long)==4) ? TLONG: TINT;
1036 Naxis[0]=data.SizeX(); Naxis[1]=data.SizeY(); Naxis[2]=data.SizeZ(); createimg();
1037 int_4* arr = new int_4[Naxis[0]];
1038
1039 for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
1040 for(LONGLONG i=0;i<Naxis[0];i++) arr[i] = data(i,j,k);
1041 LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; int sta=0;
1042 fits_write_img(FitsPtr,T,deb,nel,arr,&sta);
1043 if(sta) {
1044 printerrorwrite("int_4",j,k,sta); delete [] arr;
1045 throw
1046 NotAvailableOperation("FitsImg3DRd::Write(TArray<int_4>): Error Writing Fits file\n");
1047 }
1048 }
1049
1050 delete [] arr;
1051}
1052
1053/*! Write a float 3D image to FITS file. */
1054void FitsImg3DWriter::Write(TArray<float>& data)
1055{
1056 if(data.Rank()!=3)
1057 throw ParmError("FitsImg3DRd::Write(TArray<float>): not a 3D array\n");
1058
1059 Naxis[0]=data.SizeX(); Naxis[1]=data.SizeY(); Naxis[2]=data.SizeZ(); createimg();
1060 float* arr = new float[Naxis[0]];
1061
1062 for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
1063 for(LONGLONG i=0;i<Naxis[0];i++) arr[i] = data(i,j,k);
1064 LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; int sta=0;
1065 fits_write_img(FitsPtr,TFLOAT,deb,nel,arr,&sta);
1066 if(sta) {
1067 printerrorwrite("float",j,k,sta); delete [] arr;
1068 throw
1069 NotAvailableOperation("FitsImg3DRd::Write(TArray<float>): Error Writing Fits file\n");
1070 }
1071 }
1072
1073 delete [] arr;
1074}
1075
1076/*! Write a double 3D image to FITS file. */
1077void FitsImg3DWriter::Write(TArray<double>& data)
1078{
1079 if(data.Rank()!=3)
1080 throw ParmError("FitsImg3DRd::Write(TArray<double>): not a 3D array\n");
1081
1082 Naxis[0]=data.SizeX(); Naxis[1]=data.SizeY(); Naxis[2]=data.SizeZ(); createimg();
1083 double* arr = new double[Naxis[0]];
1084
1085 for(LONGLONG k=0;k<Naxis[2];k++) for(LONGLONG j=0;j<Naxis[1];j++) {
1086 for(LONGLONG i=0;i<Naxis[0];i++) arr[i] = data(i,j,k);
1087 LONGLONG deb = Naxis[0]*(j+Naxis[1]*k)+1, nel = Naxis[0]; int sta=0;
1088 fits_write_img(FitsPtr,TDOUBLE,deb,nel,arr,&sta);
1089 if(sta) {
1090 printerrorwrite("double",j,k,sta); delete [] arr;
1091 throw
1092 NotAvailableOperation("FitsImg3DRd::Write(TArray<double>): Error Writing Fits file\n");
1093 }
1094 }
1095
1096 delete [] arr;
1097}
1098
1099/*! Print infos. */
1100void FitsImg3DWriter::Print(ostream& os) const
1101{
1102os<<"FitsImg3DWriter::Print: FitsFN "<<FitsFN<<endl
1103 <<" HduType "<<HduType<<" NOverFlow "<<NOverFlow<<" BitPix "<<BitPix
1104 <<" Naxis1 "<<Naxis[0]<<" Naxis2 "<<Naxis[1]<<" Naxis3 "<<Naxis[2]<<endl;
1105}
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